View source for Mohid Bibliography

==Journal Papers By Author==

===A-E===

Almeida C, Ramos TB, Sobrinho J, Neves R, Proença de Oliveira R. An Integrated Modelling Approach to Study Future Water Demand Vulnerability in the Montargil Reservoir Basin, Portugal. Sustainability. 2019; 11(1), 206. Available at: [[https://doi.org/10.3390/su11010206 Download]]

Alonso R, Jackson M, Santoro P, Fossati M, Solari S, Teixeira L. Wave and tidal energy resource assessment in Uruguayan shelf seas. Renewable Energy. 2017; 114(Part A): 18-31. Available at: [[https://doi.org/10.1016/j.renene.2017.03.074 Link]]

Angeletti S, Pierini JO, Cervellini PM. Suspended sediment contribution resulting from bioturbation in intertidal sites of a SW Atlantic mesotidal estuary: data analysis and numerical modelling. Scientia Marina. 2018; 82(4): 245-256. Available at: [[http://dx.doi.org/10.3989/scimar.04799.07A Download]]

Antiguedad I, Zabaleta A, Martinez-Santos M, Ruiz E, Uriarte J, Morales T, Comin FA, Carranza F, Español C, Navarro E, Bodoque JM, Ladera J, Brito D, Neves R, Bernard-Jannin L, Sun X, Teissier S, Sauvage S, Sanchez-Perez JM. A simple multi-criteria approach to delimitate nitrate attenuation zones in alluvial floodplains. Four cases in south-western Europe, Ecological Engineering. 2017; 103(B): 315-331. Available at: [[https://doi.org/10.1016/j.ecoleng.2016.09.007 Link]]

Archetti G, Bernia S, Salvà-Catarineu M. Análisis de los vectores ambientales que afectan la calidad del medio en la bahía del Fangar (Delta Del Ebro) mediante herramientas SIG. GeoFocus. 2010; 10: 252-279. Available at: [[https://www.geofocus.org/index.php/geofocus/article/view/200 Download]] (In Spanish)

Arifin T, Y Y, Ismail MFA. Kondisi arus pasang surut di perairan pesisir kota Makassar, Sulawesi Selatan. Tidal currents condition in Makassar waters, South Sulawesi. Depik. 2012; 1(3): 183-188. Available at: [[http://jurnal.unsyiah.ac.id/depik/article/view/113/106 Link]] (In Indonesian)

Ascione Kenov I, Deus R, Alves CN, Neves, R. Modelling seagrass biomass and relative nutrient content. Journal of Coastal Research. 2013; 29(6): 1470–1476. Available at: [[http://dx.doi.org/10.2112/JCOASTRES-D-13-00047.1 Link]]

Ascione Kenov I, Garcia AC, Neves R. Residence time of water in the Mondego Estuary (Portugal). Estuarine, Coastal and Shelf Science. 2012; 106: 13–22. Available at:  [[http://dx.doi.org/10.1016/j.ecss.2012.04.008 Link]]

Ascione Kenov I, Muttin F, Campbell R, Fernandes R, Campuzano F, Machado F, Franz G, Neves R. Water fluxes and renewal rates at Pertuis d'Antioche/Marennes-Oléron Bay, France. Estuarine, Coastal and Shelf Science. 2015; 167, Part A: 32–44. Available at: [[http://dx.doi.org/10.1016/j.ecss.2015.05.031 Link]]

Ballent A, Pando S, Purser A, Juliano MF, Thomsen L. Modelled transport of benthic marine microplastic pollution in the Nazaré Canyon. Biogeosciences. 2013; 10: 7957-7970. Available at: [[http://dx.doi.org/10.5194/bg-10-7957-2013 Link]]

Balseiro CF, Carracedo P, Gómez B, Leitão P, Montero P, Naranjo L, Penabad E, Pérez-Muñuzuri V. Tracking the Prestige oil spill: An operational experience in simulation at MeteoGalicia. Weather. 2003; 58: 452–458. Available at: [[http://dx.doi.org/10.1002/wea.6080581204 Link]]

Barão L, Chambel-Leitão P, Braunschweig F, Neves RJ, Gonçalves MC, Ramos TB, Castanheira NL. Simulation of water dynamics in two irrigated soils. Revista de Ciências Agrárias. 2010; 33(1): 346-357. Available at: [[http://www.scielo.mec.pt/scielo.php?script=sci_arttext&pid=S0871-018X2010000100037&lng=en&nrm=i&tlng=en Download]]

Bartolomeu S, Malhadas MS, Ribeiro J, Leitão PC, Dias JM. Influence of MeteOcean processes on MSYM sea level predictions in the Malacca Straits. Modern Management Forum. 2018; 2(2): 1-17. Available at: [[http://dx.doi.org/10.18686/mmf.v2i1.1069 Download]]

Bastos L, Bio A, Iglesias I. The Importance of Marine Observatories and of RAIA in Particular. Frontiers in Marine Science. 2016; 3: 140. Available at: [[http://dx.doi.org/10.3389/fmars.2016.00140 Link]]

Beckers PM, Neves RJ. A semi-implicit tidal model of the North European Continental Shelf. Applied Mathematical Modelling. 1985; 9(6): 395-402. Available at: [[http://dx.doi.org/10.1016/0307-904X(85)90104-0 Link]]

Bernard-Jannin L, Brito D, Sun X, Jauch E, Neves R, Sauvage S, Sánchez-Pérez JM. Spatially distributed modelling of surface water-groundwater exchanges during overbank flood events – a case study at the Garonne River. Advances in Water Resources. 2016; 94: 146-159. Available at: [[http://dx.doi.org/10.1016/j.advwatres.2016.05.008 Link]]

Bodoque JM, Ladera J, Yela JL, Alonso-Azcárate J, Brito D, Antigüedad I, Duran R, Attard E, Lauga B, Sánchez-Pérez JM. Recovering hydromorphological functionality to improve natural purification capacity of a highly human-modified wetland. Ecological Engineering. 2017; 103(B): 332-343. Available at: [[http://dx.doi.org/10.1016/j.ecoleng.2016.02.013 Link]]

Brandimarte L, Popescu I, Neamaha NK. Analysis of fresh-saline water interface at the Shatt Al-Arab estuary. International Journal of River Basin Management. 2015; 13(1): 17-25. Available at: [[http://dx.doi.org/10.1080/15715124.2014.945092 Link]]

Braunschweig F, Martins F, Chambel P, Neves R. A methodology to estimate renewal time scales in estuaries: the Tagus Estuary case. Ocean Dynamics. 2003; 53(3): 137-145. Available at: [[http://dx.doi.org/10.1007/s10236-003-0040-0 Link]]

Braunschweig F, Leitão P, Fernandes L, Pina P, Neves RJJ. The object-oriented design of the integrated water modelling system MOHID. Developments in Water Science. 2004; 55(2): 1079-1090. Available at: [[https://doi.org/10.1016/S0167-5648(04)80126-6 Link]]

Brito D, Campuzano FJ, Sobrinho J, Fernandes R, Neves R. Integrating operational watershed and coastal models for the Iberian Coast: Watershed model implementation – A first approach. Estuarine, Coastal and Shelf Science. 2015; 167, Part A: 138-146. Available at: [[http://dx.doi.org/10.1016/j.ecss.2015.10.022 Link]]

Brito D, Neves R, Branco MA, Gonçalves MC, Ramos TB. Modeling ﬂood dynamics in a temporary river draining to an eutrophic reservoir in southeast Portugal. Environ Earth Sciences. 2017; 76:377 Available at: [[https://dx.doi.org/10.1007/s12665-017-6713-7 Link]]

Brito D, Ramos TB, Gonçalves MC, Morais M, Neves R. Integrated modelling for water quality management in a eutrophic reservoir in south-eastern Portugal.Environmental Earth Sciences. 2018; 77(2): 40. Available at: [[https://doi.org/10.1007/s12665-017-7221-5 Link]] 

Brock TD. Calculating solar radiation for ecological studies. Ecological Modelling. 1981; 14(1–2): 1-19. Available at: [[http://dx.doi.org/10.1016/0304-3800(81)90011-9 Link]] 

Brown SL, Cox R, Feunteun E, Thorin S, Lefeuvre JC. Overview of the EUROSAM project and a Decision Support System. Continental Shelf Research. 2003; 23: 1617-1634. Available at: [[http://dx.doi.org/10.1016/j.csr.2003.06.007 Link]]

Calero Quesada MC, García-Lafuente J, Garel E, Delgado Cabello J, Martins F, Moreno-Navas J. Effects of tidal and river discharge forcings on tidal propagation along the Guadiana Estuary. Journal of Sea Research. 2019; 146: 1-13. Available at: [[https://doi.org/10.1016/j.seares.2019.01.006 Link]]

Campuzano F, Brito D, Juliano M, Fernandes R, de Pablo H, Neves R. Coupling watersheds, estuaries and regional ocean through numerical modelling for Western Iberia: a novel methodology. Ocean Dynamics. 2016; 66(12): 1745–1756. Available at: [[http://dx.doi.org/10.1007/s10236-016-1005-4 Link]]

Campuzano FJ, Gutiérrez JM, Senabre T, Mateus MD, Perán A, Belmonte A, Aliaga V, Neves R. A modelling approach to estimate the environmental and productive carrying capacity for a Mediterranean coastal marine culture park. Journal of Aquaculture Research & Development. 2015; 6: 373. Available at: [[http://dx.doi.org/10.4172/2155-9546.1000373 Download]]

Campuzano FJ, Mateus MD, Leitão PC, Leitão PC, Marín VH, Delgado LE, Tironi A, Pierini JO, Sampaio AFP, Almeida P, Neves RJ. Integrated coastal zone management in South America: A look at three contrasting systems. Ocean & Coastal Management. 2013; 72: 22-35. Available at: [[http://dx.doi.org/10.1016/j.ocecoaman.2011.08.002 Link]].

Campuzano FJ, Pierini JO, Leitão PC, Gómez EA, Neves RJ. Characterization of the Bahia Blanca estuary by data analysis and numerical modelling. Journal of Marine Systems. 2014; 129: 415-424. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2013.09.001 Link]]

Campuzano F, Nunes S, Malhadas M, Neves R. Modelling hydrodynamics and water quality of Madeira Island (Portugal). GLOBEC International Newsletter. 2010; 16(1): 40-42. Available at: [[http://www.mohid.com/PublicData/Products/Papers/Globec_campuzanofjetal.pdf Download]]

Canas A, Santos A, Leitão P. Effect of large scale atmospheric pressure changes on water level in the Tagus Estuary. Journal of Coastal Research. 2009; SI(56): 1627-1631. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/1627.1631_A.Canas_ICS2009.pdf Download]]

Cancino L, Neves R. Hydrodynamic and sediment suspension modelling in estuarine systems Part I: Description of the numerical models. Journal of Marine Systems. 1999; 22(2-3): 105-116. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0924796399000354 Link]]

Cancino L, Neves R. Hydrodynamic and sediment suspension modelling in estuarine systems Part II: Application to the Western Scheldt and Gironde estuaries. Journal of Marine Systems. 1999; 22(2-3): 117-131. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0924796399000366 Link]]

Canuto N, Ramos TB, Oliveira AR, Simionesei L, Basso M, Ramiro Neves. Influence of reservoir management on Guadiana streamflow regime. Journal of Hydrology: Regional Studies. 2019; 25: 100628. Available at: [[https://doi.org/10.1016/j.ejrh.2019.100628 Link]]

Capet A, Fernández V, She J, Dabrowski T, Umgiesser G, Staneva J, Mészáros L, Campuzano F, Ursella L, Nolan G, El Serafy G. Operational Modeling Capacity in European Seas—An EuroGOOS Perspective and Recommendations for Improvement. Frontiers in Marine Science. 2020; 7: 129. Available at: [[https://doi.org/10.3389/fmars.2020.00129 Download]]

Carracedo P, Torres-López S, Barreiro M, Montero P, Balseiro CF, Penabad E, Leitao PC, Pérez-Muñuzuri V. Improvement of pollutant drift forecast system applied to the Prestige oil spills in Galicia Coast (NW of Spain): development of an operational system. Marine Pollution Bulletin. 2006; 53(5-7): 350-360. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2005.11.014 Link]]

Carvajalino-Fernandez MA, Lojek O, Fernandes L, Vivas-Aguas LJ. Desarrollo preliminar de un modelo hidrodinámico y de transporte de nutrientes para la ciénaga grande de Santa Marta. Boletín de Investigaciones Marinas y Costeras - INVEMAR. 2017; 46(1): 191-198. Available at: [[http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0122-97612017000100191&lng=en&nrm=iso Link]]

Ceregeiro JM, Pinheiro MD, Campuzano FJ. Tidal farm electric energy production in the Tagus Estuary. Revista de Gestão Costeira Integrada. 2020; 20(1): 61-78. Available at: [[https://doi.org/10.5894/rgci-n281 Download]] 

Cerralbo P, Grifoll M, Espino M, López J. Predictability of currents on a mesotidal estuary (Ria de Vigo, NW Iberia). Ocean Dynamics. 2013; 63(2-3): 131-141. Available at: [[http://dx.doi.org/10.1007/s10236-012-0586-9 Link]]

Chacaltana J, Jesus L, Barreto F, Innocentini V. Tide assessment for the continental shelf situated in the southwestern Atlantic between the latitudes 19.8ºS and 21.2ºS. Brazilian Journal of Oceanography. 2016; 64(2): 113-126. Available at: [[http://dx.doi.org/10.1590/S1679-87592016097906402 Download]]

Chambel-Leitão P, Ramos TB, Domingos T, Neves R. Mohid Land - Porous media, a tool for modeling soil hydrology at plot scale and watershed scale. The Open Hydrology Journal. 2015; 9: 1-12. Available at: [[http://dx.doi.org/10.2174/1874378101509010001 Link]]

Chang YS, Jin J-Y, Choi JY, Jeong WM, Hyun SK, Chung CS, Do JD. Three dimensional numerical modeling using a multi-level nesting system for identifying a water layer suitable for scallop farming in Tongyeong, Korea. Aquacultural Engineering. 2020; 89. Available at: [[https://doi.org/10.1016/j.aquaeng.2020.102058 Link]]

Cherif I, Alexandridis TK, Jauch E, Chambel-Leitao P, Almeida C. Improving remotely sensed actual evapotranspiration estimation with raster meteorological data. International Journal of Remote Sensing. 2015; 36(18): 4606-4620. Available at: [[http://dx.doi.org/10.1080/01431161.2015.1084439 Link]]

Cho K-H, Choi J-Y, Jeong S-H, Choi J-W, Kwon J-I, Park K-S. Development of a skill assessment tool for the Korea operational oceanographic system. Acta Oceanologica Sinica. 2013; 32(9): 74-81.  Available at: [[http://dx.doi.org/10.1007/s13131-013-0354-9 Link]]

Cho K-H, Li Y, Wang H, Park K-S, Choi J-Y, Shin K-I, Kwon J-I. Development and validation of an operational search and rescue modeling system for the Yellow Sea and the East and South China Seas. Journal of Atmospheric and Oceanic Technology. 2014; 31: 197–215. Available at: [[http://dx.doi.org/10.1175/JTECH-D-13-00097.1 Download]]

Choi J, Jun K, Choi Y, Cho K, Kwon J-I, Park J, Park K. High-resolution circulation forecasting of the Maenggol Channel, south coast of Korea. Acta Oceanologica Sinica. 2015; 34(12): 11-18. Available at: [[http://dx.doi.org/10.1007/s13131-015-0774-9 Link]]

Choi JW, Kwon JI, Heo KY, Choi JY. Hindcasting of search and rescue cases using the trajectory model based on KOOS (Korea Operational Oceanographic System). Journal of Coastal Research (2020) 95 (SI): 900–904. Available at: [[https://doi.org/10.2112/SI95-175.1 Link]]

Choi J-Y, Park J-Y, Cho K-H, Hyun S-K, Yoo J, Lee D-Y, Jun K-C. Field observation and modeling of wave set-up on a macrotidal beach: the Malipo Experiment. Journal of Coastal Research. 2013; Special Issue No. 65. Available at:[[http://ics2013.org/papers/Paper4246_rev.pdf Download]]

Cloux S, Allen-Perkins S, de Pablo H, Garaboa-Paz D, Montero P, Pérez Muñuzuri V. Validation of a Lagrangian model for large-scale macroplastic tracer transport using mussel-peg in NW Spain (Ría de Arousa). Science of The Total Environment. 2022; 822:153338. Available at: [[https://doi.org/10.1016/j.scitotenv.2022.153338 Download]] 

Coelho HS, Neves RR, Leitão PC, Martins H, Santos AP. The slope current along the western European margin : A numerical investigation. Bol. Inst. Esp. Oceanogr. 1999; 15(1-4): 61-72. Available at: [[http://www.ieo.es/publicaciones/boletin/pdfs/bol15/15_061-072.PDF Download]]

Coelho H, Neves R, White M, Leitao P, Santos A. A model for ocean circulation on the Iberian coast. Journal of Marine Systems. 2002; 32(1-3): 153-179. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0924796302000325 Link]]

Comin FA, Sánchez-Pérez JM, Español C, Carranza F, Sauvage S, Antiguedad I, Zabaleta A, Martinez-Santos M, Gerino M, Yao JM, Bodoque JM, Ladera J, Yela JL, Teissier S, Bernard-Jannin J, Sun X, Navarro E, Pinelli E, Chamsi O, Neves R, Brito D, Ruiz E, Uriarte J, Jiménez JJ, García M, Barcos A, Sorando R, Floodplain capacity to depollute water in relation to the structure of biological communities, Ecological Engineering, Volume 103, Part B, June 2017, Pages 301-314, ISSN 0925-8574 Available at: [[https://doi.org/10.1016/j.ecoleng.2016.06.007 Link]]

Contreras-Tereza VK, Salas-de-León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. The 2010 Gulf of Mexico oil spill: a modeling study. Arabian Journal of Geosciences. 2021; 14:636. Available at: [[https://doi.org/10.1007/s12517-021-06959-x Link]]

Contreras‐Tereza VK, Salas‐de‐León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. Tsunami run‐up along the Zihuatanejo region, Mexican Pacific Coast: A modelling study. J Flood Risk Management. 2021; 14:e12669. Available at: [[https://doi.org/10.1111/jfr3.12669 Download]]

Critchell K, Grech A, Schlaefer J, Andutta FP, Lambrechts J, Wolanski E, Hamann M. Modelling the fate of marine debris along a complex shoreline: Lessons from the Great Barrier Reef, Estuarine, Coastal and Shelf Science. 2015; 167(B): 414–426. Available at: [[http://dx.doi.org/10.1016/j.ecss.2015.10.018 Link]]

Deus R, Brito D, Kenov IA, Lima M, Costa V, Medeiros A, Neves R, Alves CN. Three-dimensional model for analysis of spatial and temporal patterns of phytoplankton in Tucuruí reservoir, Pará, Brazil. Ecological Modelling. 2013; 253: 28-43. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2012.10.013 Link]]

deCastro M, Gómez-Gesteira M, Alvarez I, Prego R. Negative estuarine circulation in the Ria of Pontevedra (NW Spain). Estuarine, Coastal and Shelf Science. 2004; 60(2): 301-312. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0272771404000228 Link]]

deCastro M, Gómez-Gesteira M, Prego R, Neves R. Wind influence on water exchange between the ria of Ferrol (NW Spain) and the shelf. Estuarine, Coastal and Shelf Science. 2003; 56(5-6): 1055-1064. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0272771402003025 Link]]

de Pablo H, Sobrinho J, Garaboa-Paz D, Fonteles C, Neves R, Gaspar MB. The influence of the river discharge on residence time, exposure time and integrated water fractions for the Tagus Estuary (Portugal). Frontiers in Marine Science. 2022; 8:734814. Available at: [[https://doi.org/10.3389/fmars.2021.734814 Download]] 

de Pablo H, Sobrinho J, Garcia M, Campuzano F, Juliano M. Validation of the 3D-MOHID Hydrodynamic Model for the Tagus Coastal Area. Water. 2019; 11: 1–21. Available at: [[https://doi.org/10.3390/w11081713 Link]]

Declerck D, Delpey M, Rubio A, Ferrer L, Basurko OC, Mader J, Louzao M. Transport of floating marine litter in the coastal area of the south-eastern Bay of Biscay: A Lagrangian approach using modelling and observations. Journal of Operational Oceanography. 2019. Available at: [[https://doi.org/10.1080/1755876X.2019.1611708 Link]]

Delpey MT, Ardhuin F, Otheguy P, Jouon A. Effects of waves on coastal water dispersion in a small estuarine bay. Journal of Geophysical Research: Oceans. 2014; 119: 1–17. Available at: [[http://onlinelibrary.wiley.com/doi/10.1002/2013JC009466/abstract Link]]

Desmit X, Thieu V, Billen G, Campuzano F, Dulière V, Garnier J, Lassaletta L, Ménesguen A, Neves R, Pinto L, Silvestre M, Sobrinho JL, Lacroix G. Reducing marine eutrophication may require a paradigmatic change. Science of The Total Environment. 2018; 635: 1444-1466. Available at: [[https://doi.org/10.1016/j.scitotenv.2018.04.181 Link]]

Díaz LO, Pierini JO, Leitao PC, Malhadas M, Ribeiro J, Leitao JC,  Restrepo J. Three-dimensional oil spill transport and dispersion at sea by an event of blowout. DYNA. August 2014; 81 (186): 42-50. Available at: [[http://dyna.unalmed.edu.co/es/ediciones/186/articulos/v81n186a05/v81n186a05.pdf Download]]

Duarte B, Valentim JM, Dias JM, Marques JC, Silva H, Caçador I. Modelling sea level rise (SLR) impacts on salt marsh detrital outwelling C and N exports from an estuarine coastal lagoon to the ocean (Ria de Aveiro, Portugal). Ecological Modelling. 2014; 289: 36–44. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2014.06.020 Link]]

Epelde AM, Antiguedad I, Brito D, Jauch E, Neves R, Garneau C, Sauvage S, Sánchez-Pérez JM. Different modelling approaches to evaluate nitrogen transport and turnover at the watershed scale. Journal of Hydrology. 2016; 539: 478-494. Available at: [[http://dx.doi.org/10.1016/j.jhydrol.2016.05.066 Link]]

Evaristo A, Pinto L, Ascione Kenov I, Neves R. Hidrodinâmica da Baía do Lobito. Parte I - Correntes de maré. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 101-110. Available at: [[http://dx.doi.org/10.5894/rgci-n406 Download]]. (In Portuguese)

Evaristo A, Neves R, Pinto L, Sobrinho J. Hidrodinâmica da Baía do Lobito. Parte II - Escoamento Baroclínico. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 111-125. Available at: [[http://dx.doi.org/10.5894/rgci-n407 Download]]. (In Portuguese)

===F-J===

Fernandes R, Braunschweig F, Lourenço F, Neves R. Combining operational models and data into a dynamic vessel risk assessment tool for coastal regions. Ocean Science. 2016; 12: 285-317. Available at: [[http://dx.doi.org/10.5194/os-12-285-2016 Link]].

Figueiredo D, Dos Santos A, Mateus M, Pinto L. Hydrodynamic modelling of Port Foster, Deception Island, Antarctica.  Antarctic Science. 2018; 115-124. Available at: [[http://dx.doi.org/10.1017/S0954102017000463 Link]].

Fonseca VF, Reis-Santos P, Duarte B, Cabral HN, Caçador MI, Vaz N, Dias JM, Pais MP. Roving pharmacies: Modelling the dispersion of pharmaceutical contamination in estuaries. Ecological Indicators. 2020; 115: 106437. Available at: [[https://doi.org/10.1016/j.ecolind.2020.106437 Link]] 

Fossati M, Piedra-Cueva I. A 3D hydrodynamic numerical model of the Río de la Plata and Montevideo’s coastal zone. Applied Mathematical Modelling. 2013; 37(3):1310-1332. Available at: [[http://dx.doi.org/10.1016/j.apm.2012.04.010 Link]].

Franz G, Delpey M, Brito D, Pinto L, Leitão P, Neves R. Modelling of sediment transport and morphological evolution under the combined action of waves and currents. Ocean Science Discussions. 2017; 3:1-26. Available at: [[http://www.ocean-sci-discuss.net/os-2017-8/ Link]]. 

Franz G, Garcia CAE, Pereira J, de Freitas Assad LP, Rollnic M, Garbossa LHP, da Cunha LC, Lentini CAD, Nobre P, Turra A, Trotte-Duhá JR, Cirano M, Estefen SF, Lima JAM, Paiva AM, Noernberg MA, Tanajura CAS, Moutinho JL, Campuzano F, Pereira ES, Lima AC, Mendonça LFF, Nocko H, Machado L, Alvarenga JBR, Martins RP, Böck CS, Toste R, Landau L, Miranda T, dos Santos F, Pellegrini J, Juliano M, Neves R, Polejack A. Coastal Ocean Observing and Modeling Systems in Brazil: Initiatives and Future Perspectives. Frontiers in Marine Science. 2021; 8: 681619. Available at: [[https://doi.org/10.3389/fmars.2021.681619 Download]]

Franz G, Leitão P, Pinto L, Jauch E, Fernandes L, Neves R. Development and validation of a morphological model for multiple sediment classes. International Journal of Sediment Research. 2017. Available at: [[http://dx.doi.org/10.1016/j.ijsrc.2017.05.002 Link]]

Franz G, Leitão P, Santos A, Juliano M, Neves R. From regional to local scale modelling on the south-eastern Brazilian shelf: case study of Paranaguá estuarine system. Brazilian Journal of Oceanography. 2016; 64(3): 277-294. Available at: [[http://dx.doi.org/10.1590/S1679-875920161195806403 Download]].

Franz G, Pinto L, Ascione I, Mateus M, Fernandes R, Leitão P, Neves R. Modelling of cohesive sediment dynamics in tidal estuarine systems: Case study of Tagus estuary, Portugal. Estuarine, Coastal and Shelf Science. 2014; 151: 34–44. Available at: [[http://dx.doi.org/10.1016/j.ecss.2014.09.017 Link]].

Gabriel S, Martins F. First results of a long term morphodynamic process based model. Journal of Coastal Research. 2009; SI(56): 952-955. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/952.955_S.Gabriel_ICS2009.pdf Download]].

Galesic M, Andricevic R, Gotovac H, Srzic V. Concentration statistics of solute transport for the near field zone of an estuary. Advances in Water Resources. 2016; 94: 424-440. Available at: [[http://dx.doi.org/10.1016/j.advwatres.2016.06.009 Link]]. 

Galvao P, Chambel Leitao P, Neves R, ChambelLeitao P. A different approach to the modified Picard method for water flow in variably saturated media. Developments in Water Science. 2004; 55(1): 557-567. Available at: [[https://doi.org/10.1016/S0167-5648(04)80081-9 Link]]. 

Garbossa LHP, Santos AA, Lapa KR. Seaweed dispersion under different environmental scenarios based on branches settling velocity and hydrodynamic lagrangian model, Regional Studies in Marine Science. 2021, 101909, ISSN 2352-4855, Available at: [[https://doi.org/10.1016/j.rsma.2021.101909 Link]]

Gardi A, Valencia N, Guillande R, André C. Inventory of uncertainties associated with the process of tsunami damage assessment on buildings (SCHEMA FP6 EC co-funded project). Natural Hazards and Earth System Sciences. 2011; 11: 883–893. Available at: [[http://www.nat-hazards-earth-syst-sci.net/11/883/2011/nhess-11-883-2011.pdf Download]].

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Gomez-gesteira M, Montero P, Prego R, Taboada JJ, Leitão P, Ruiz-Villarreal M, Neves R, Pérez-Villar V. A two-dimensional particle tracking model for pollution dispersion in A Coruña and Vigo Rias (NW Spain). Oceanologica Acta. 1999; 22: 167-177. Available at: [[http://dx.doi.org/10.1016/S0399-1784(99)80043-7 Download]]. 

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Hermansyah H, Ningsih NS, Nabil N, Tarya A, Syahruddin S. Numerical modeling of tidal current patterns using 3-Dimensional MOHID in Balikpapan Bay, Indonesia. Jurnal Ilmiah Perikanan dan Kelautan. 2020; 12(1): 9–20. Available at: [[http://dx.doi.org/10.20473/jipk.v12i1.16257 Download]]

Henry L-A, Moreno Navas J, Roberts JM. Multi-scale interactions between local hydrography, seabed topography, and community assembly on cold-water coral reefs. Biogeosciences. 2013; 10:2737-2746. Available at: [[http://dx.doi.org/10.5194/bg-10-2737-2013 Link]].

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Janeiro J, Fernandes E, Martins F, Fernandes R. Wind and freshwater influence over hydrocarbon dispersal on Patos Lagoon, Brazil. Marine Pollution Bulletin. 2008; 56(4): 650-665. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2008.01.011 Link]].

Janeiro J, Martins F, Relvas P. Towards the development of an operational tool for oil spills management in the Algarve coast. Journal of Coastal Conservation. 2012; 16(4): 449-460. Available at: [[http://dx.doi.org/10.1007/s11852-012-0201-8 Link]].

Janeiro J, Zacharioudaki A, Sarhadi E, Neves A, Martins F. Enhancing the management response to oil spills in the Tuscany Archipelago through operational modelling. Marine Pollution Bulletin. 2014; 85(2): 574-589. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2014.03.021 Link]].

Janeiro J, Neves A, Martins F, Relvas P. Integrating technologies for oil spill response in the SW Iberian coast. Journal of Marine Systems. September 2017; 173: 31-42. Available at: [[https://doi.org/10.1016/j.jmarsys.2017.04.005 Link]]

Juliano MMF, Neves R, Rodrigues PPGW, Lugon Jr. J, Fernandes R. Aplicação da Plataforma MOHID para simulação computacional de deriva oceânica de petróleo na bacia de Campos - RJ. Boletim do Observatório Ambiental Alberto Ribeiro Lamego. 2012; 6(1): 161-172. Available at: [[http://dx.doi.org/10.5935/2177-4560.20120010 Download]]. (In Portuguese)

===K-O===

Lee C, Choi H-W, Park J, Kim J, Park J. Derivation of candidate sites for a tidal current-pumped storage hybrid power plant using GIS-based site selection analysis. Journal of the Korean Association of Geographic Information Studies. 2020; 23(4): 184–207. Available at: [[https://doi.org/10.11108/KAGIS.2020.23.4.184 Download]] (In Korean) 

Lee J-H, Lim B-J, Kim D-Y, Park S-H, Chang Y-S. The validation of MOHID regional ocean circulation model around the East Asian Seas in 2016. Journal of the Korean Earth Science Society. 2018; 39(5): 436-457. Available at: [[https://doi.org/10.5467/JKESS.2018.39.5.436 Download]] (In Korean)

Leitão P, Coelho H, Santos A, Neves R. Modelling the main features of the Algarve coastal circulation during July 2004: A downscaling approach. Journal of Atmospheric & Ocean Science. 2005; 10(4): 421-462. Available at: [[http://dx.doi.org/10.1080/17417530601127704 Link]].

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Leitão P, Silva A, Ribeiro J, Carneiro E, Pinto J. Avaliação de taxas de assoreamento no estuário do rio Sado. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2020; 20(2): 121-130. Available at: [[http://dx.doi.org/10.5894/rgci-n300 Download]]. (In Portuguese)

Li Y, Martins F, Wolanski E. Sensitivity analysis of the physical dynamics of the Fly River plume in Torres Strait. Estuarine, Coastal and Shelf Science. 2017; 194: 84-91. Available at: [[https://doi.org/10.1016/j.ecss.2017.06.006 Link]].

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Mateus M, da Silva Vieira R, Almeida C, Silva M, Reis F. ScoRE—A Simple Approach to Select a Water Quality Model. Water. 2018; 10(12): 1811. Available at: [[https://doi.org/10.3390/w10121811 Download]]

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Mateus M, Riflet G, Chambel P, Fernandes L, Fernandes R, Juliano M, Campuzano F, de Pablo H, Neves R. An operational model for the West Iberian coast: products and services. Ocean Science. 2012; 8: 713-732. Available at: [[http://dx.doi.org/10.5194/os-8-713-2012 Link]]

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Mills L, Janeiro J, Neves AAS, Martins F. The impact of sea level rise in the Guadiana estuary. Journal of Computational Science. 2020; 44: 101169. Available at: [[https://doi.org/10.1016/j.jocs.2020.101169 Link]]

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Oliveira AP, Mateus MD, Cabeçadas G, Neves R. Water-air CO<sub>2</sub> fluxes in the Tagus estuary plume (Portugal) during two distinct winter episodes. Carbon Balance and Management. 2015; 10:2. Available at: [[http://dx.doi.org/10.1186/s13021-014-0012-3 Link]].

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===P-T===

Paiva PM, Lugon Junior J, Barreto AN, Silva JAF, Silva Neto AJ. Comparing 3d and 2d computational modeling of an oil well blowout using MOHID platform - A case study in the Campos Basin. Science of The Total Environment. 2017; 595: 633-641. Available at: [[https://doi.org/10.1016/j.scitotenv.2017.04.007 Link]].

Paiva, PM, Lugon Junior J, Calderón EN, Juliano MM, Molisani, M. Decommissioning of subsea oil and gas production pipelines: hydrodynamic modeling for preliminary assessment of sediment resuspension and burial onto benthic organisms. Journal of Integrated Coastal Zone Management. 2020: 20(3): 161-168. Available at: [[http://dx.doi.org/10.5894/rgci-n286 Download]]

Palomar P, Losada I. Desalinización de agua marina en España: Aspectos a considerar en el diseño del sistema de vertido para protección del medio marino. Revista de Obras Públicas. 2008; 3486: 37-52. Available at: [[http://www.ugr.es/~iagua/LICOM_archivos/Palomar&Losada2008.pdf Download]]. (In Spanish).

Pando S, Juliano MF, García R, de Jesus Mendes PA, Thomsen L. Application of a lagrangian transport model to organo-mineral aggregates within the Nazaré canyon. Biogeosciences. 2013; 10: 4103-4115. Available at: [[http://dx.doi.org/10.5194/bg-10-4103-2013 Link]].

Park J-S, Lee C-Y, Park J-S. Choi H-W, Kp D-H, Lee J-L. Assessment of tidal stream energy resources using a numerical model in Southwestern Sea of Korea. Ocean Science Journal. 2019; 54: 529–541. Available at: [[https://doi.org/10.1007/s12601-019-0038-2 Link]]

Park K-S, Heo K-Y, Jun K, Kwon J-I, Kim J, Choi J-Y, Cho K-H, Choi B-J, Seo S-N, Kim Y, Kim S-D, Yang C-S, Lee J-C, Kim S-I, Kim S, Choi J-W, Jeong S-H. Development of the Operational Oceanographic System of Korea. Ocean Science Journal. 2015; 50(2): 353-369. Available at: [[http://dx.doi.org/10.1007/s12601-015-0033-1 Link]].

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Picado A, Abreu J, Carvalho DM, Santos H, Leitão P, Rodrigues J, Chambel Leitão J, Dias JM. Optimization of safe navigability conditions in shallow inland waters: The Routinav app. Ocean Engineering. 2022; 259: 111946. Available at: [[https://www.sciencedirect.com/science/article/pii/S0029801822012823 Download]].

Pierini JO, Campuzano FJ, Leitão PC, Gómez EA, Neves RJ. Atmospheric influence over the residence time in the Bahia Blanca Estuary, Argentina. Thalassas. 2019; 35(1): 275–286. Available at: [[https://doi.org/10.1007/s41208-018-0120-z Link]]

Pierini JO, Lovallo M, Telesca L, Gómez EA. Investigating prediction performance of an artificial neural network and a numerical model of the tidal signal at Puerto Belgrano, Bahia Blanca Estuary (Argentina). Acta Geophysica. 2013; 61(6): 1522-1537. Available at: [[http://dx.doi.org/10.2478/s11600-012-0093-x Link]]. 

Pinto L, Mateus M, Silva A. Modeling the transport pathways of harmful algal blooms in the Iberian coast. Harmful Algae. 2016; 53: 8-16. Available at: [[http://dx.doi.org/10.1016/j.hal.2015.12.001 Link]].

Piroddi C, Teixeira H, Lynam CP, Smith C, Alvarez MC, Mazik K, Andonegi E, Churilova T, Tedesco L, Chifflet M, Chust G, Galparsoro I, Garcia AC, Kämäri M, Kryvenko O, Lassalle G, Neville S, Niquil N, Papadopoulou N, Rossberg AG, Suslin V, Uyarra MC. Using ecological models to assess ecosystem status in support of the European Marine Strategy Framework Directive. Ecological Indicators. 2015; 58: 175-191. Available at: [[http://dx.doi.org/10.1016/j.ecolind.2015.05.037 Link]].

Precioso CHO, Kalas FA, Rodrigues PPGW, Lugon Jr J. Avaliação da variabilidade de parâmetros ambientais numa lagoa urbana (Campos Dos Goytacazes, RJ) com auxílio so sistema MOHID. Boletim do Observatório Ambiental Alberto Ribeiro Lamego. 2010; 4(2): 185-204. Available at: [[http://dx.doi.org/10.5935/2177-4560.20100019 Link]].

Portela LI, Neves R. Numerical modelling of suspended sediment transport in tidal estuaries: A comparison between the Tagus (Portugal) and the Scheldt (Belgium-the Netherlands). Netherlands Journal of Aquatic Ecology. 1994; 28(3-4): 329-335. Available at: [[https://doi.org/10.1007/BF02334201 Link]].

Póvoa P , A Nobre, P Leitão, P Galvão, H Santos, A Frazão, R Neves, JS Matos. Operational decision support system for large combined sewage systems: Lisbon / Tagus Estuary case study Reference. Water Science and Technology. 2015; 72(8): 1421-1427. Available at: [[http://wst.iwaponline.com/content/72/8/1421 Link]]

Ramos TB, Darouich H, Gonçalves MC, Brito D, Castelo Branco MA, Martins JC, Fernandes ML, Pires FP, Morais M, Neves R. An integrated analysis of the eutrophication process in the Enxoé Reservoir within the DPSIR framework. Water. 2018; 10(11):1576. Available at: [[https://doi.org/10.3390/w10111576 Download]]

Ramos TB, Simionesei L, Jauch E, Almeida C, Neves R. Modelling soil water and maize growth dynamics influenced by shallow groundwater conditions in the Sorraia Valley region, Portugal. Agricultural Water Management. 2017; 185: 27-42. Available at: [[http://dx.doi.org/10.1016/j.agwat.2017.02.007 Link]].

Ramos TB, Simionesei L, Oliveira AR, Darouich H, Neves R. Assessing the Impact of LAI Data Assimilation on Simulations of the Soil Water Balance and Maize Development Using MOHID-Land. Water. 2018; 10(10): 1367. Available at: [[https://doi.org/10.3390/w10101367 Download]]

Restrepo JC, Escobar J, Otero L, Franco D, Pierini J, Correa I. Factors influencing the distribution and characteristics of surface sediment in the Bay of Cartagena, Colombia. Journal of Coastal Research. 2017; 33(1): 135–148. Available at: [[http://dx.doi.org/10.2112/JCOASTRES-D-15-00185.1 Link]]. 

Ribeiro J, Silva A, Leitão P. High resolution tsunami modelling for the evaluation of potential risk areas in Setúbal (Portugal). Natural Hazards and Earth System Science. 2011; 11(8): 2371-2380. Available at: [[http://www.nat-hazards-earth-syst-sci.net/11/2371/2011/nhess-11-2371-2011.pdf Download]]. 

Riflet G, Juliano M, Fernandes L, Leitão PC, Neves R. Operational ocean forecasting of the portuguese waters. Mercator-Ocean Quarterly Newsletter. 2008; 30: 20–32. Available at: [[http://www.mohid.com/PublicData/products/Papers/MercatorOcean_lettre_30_en_2008_GR.pdf Download]]

Rodrigues D, Fernandes A, Filippo A, Kjerfve B, Pinto L, Neves R. Low-frequency circulation on the Ilha Grande channel, Rio de Janeiro, Brazil. Regional Studies in Marine Science. 2022; 50:102129. Available at: [[https://doi.org/10.1016/j.rsma.2021.102129 Link]]

Rodríguez C, Fossatti M, Carrizo D, Sánchez-García L, Teixeira de Mello F, Weinstein F, Lozoya JP. Mesoplastics and large microplastics along a use gradient on the Uruguay Atlantic coast: Types, sources, fates, and chemical loads. Science of The Total Environment. 2020; 721: 137734. Available at: [[https://doi.org/10.1016/j.scitotenv.2020.137734 Link]] 

Rosa A, Cardoso C, Vieira R, Faria R, Oliveira AR, Navarro G, Caldeira RMA. Impact of flash flood events on the coastal waters around Madeira island: The “Land Mass Effect”. Frontiers in Marine Science. 2022; 8:749638. Available at: [[https://doi.org/10.3389/fmars.2021.749638 Download]] 

Rueda JG, Otero LJ, Pierini JO. Hydrodynamic characterization in a tropical estuary of South America with mixed microtidal regime (Cartagena Bay, Colombia). Boletín Científico CIOH. 2013; 31: 159-174. Available at: [[http://www.cioh.org.co/dev/publicaciones/acceso_dev.php?nbol=cioh_bcc3110.pdf Download]] (In Spanish).  

Ruiz-Villarreal M, Montero P, Taboada JJ, Prego R, Leitão PC, Pérez-Villar V. Hydrodynamic model study of the Ria de Pontevedra under estuarine conditions. Estuarine, Coastal and Shelf Science. 2002; 54(1): 101-113. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S027277140190825X Link]].

Sagarduy M, Courtois S, Del Campo A, Garmendia JM, Petrau A. Differential decay and prediction of persistence of Enterococcus spp. and Escherichia coli culturable cells and molecular markers in freshwater and seawater environments. International Journal of Hygiene and Environmental Health. 2019; 222(4): 695-704. Available at: [[https://doi.org/10.1016/j.ijheh.2019.04.011 Link]]

Salamena GG, Martins F, Ridd PV. The density-driven circulation of the coastal hypersaline system of the Great Barrier Reef, Australia. Marine Pollution Bulletin. 2016; 105(1): 277–285. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2016.02.015 Link]].

Salgueiro DV, de Pablo H, Neves R, Mateus M. Modelling the thermal effluent of a near coast power plant (Sines, Portugal). Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Zone Management. 2015; 15(4). Available at: [[http://dx.doi.org/10.5894/rgci577 Download]].

Sánchez-Gutiérrez R, Gómez-Castro C. Approaching to water quality modeling processes in a subwatershed. The Virilla River case in Costa Rica. Uniciencia. 2021; 35(1): 71-89. Available at: [[https://doi.org/10.15359/ru.35-1.5 Download]] (In Spanish)

Santoro P, Fernández M, Fossati M, Cazes, G, Terra, R Piedra-Cueva, I. Pre-operational forecasting of sea level height for the Río de la Plata. Applied Mathematical Modelling. 2011; 35(5): 2462-2478. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0307904X10004750 Link]].

Santoro PE, Fossati M, Piedra-Cueva I. Study of the meteorological tide in the Río de la Plata. Continental Shelf Research. 2013; 60: 51-63. Available at: [[http://dx.doi.org/10.1016/j.csr.2013.04.018 Link]].

Santos A, Martins H, Coelho H, Leitão PC, Neves R. A circulation model for the European ocean margin. Applied Mathematical Modelling. 2002; 26(5): 563-582. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0307904X01000695 Link]].

Santos A, Nogueira J, Martins H. Survival of sardine larvae off the Atlantic Portuguese coast: a preliminary numerical study. ICES Journal of Marine Science. 2005; 62(4): 634-644. Available at: [[http://icesjms.oxfordjournals.org/cgi/doi/10.1016/j.icesjms.2005.02.007 Link]].

Santos L, Vaz L, Gomes NCM, Vaz N, Dias JM, Cunha Â, Almeida A. Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro. Estuarine, Coastal and Shelf Science. 2014; 138: 107–120. Available at: [[http://dx.doi.org/10.1016/j.ecss.2013.12.021 Link]].

Saraiva S, Fernandes L, van der Meer J, Neves R, Kooijman SALM. The role of bivalves in the Balgzand: First steps on an integrated modelling approach. Ecological Modelling. 2017; 359(34-48). Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2017.04.018. Link]].

Saraiva S, Freitas V, Ozório R, Rato A, Joaquim S, Matias D, Neves R. Mechanistic approach for oyster growth prediction under contrasting culturing conditions. Aquaculture. 2020; 522: 735105. Available at: [[https://doi.org/10.1016/j.aquaculture.2020.735105 Link]] 

Saraiva S, Pina P, Martins F, Santos M, Braunschweig F, Neves R. Modelling the influence of nutrient loads on Portuguese estuaries. Hydrobiologia. 2007; 587(1): 5-18. Available at: [[https://doi.org/10.1007/s10750-007-0675-9 Link]].

Saruwatari A, Ingram DM, Cradden L. Wave–current interaction effects on marine energy converters. Ocean Engineering. 2013; 73: 106-118. Available at: [[http://dx.doi.org/10.1016/j.oceaneng.2013.09.002 Link]].

Segurado P, Branco P, Jauch E, Neves R, Ferreira MT. Sensitivity of river fishes to climate change: The role of hydrological stressors on habitat range shifts. Science of The Total Environment. 2016; 562: 435-445. Available at: [[http://www.sciencedirect.com/science/article/pii/S0048969716306210 Link]].

Seiler LMN, Fernandes EHL, Martins F, Abreu PC. Evaluation of hydrologic influence on water quality variation in a coastal lagoon through numerical modeling. Ecological Modelling. 2015; 314: 44-61. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2015.07.021 Link]].

Seiler LMN, Fernandes EHL, Siegle E. Effect of wind and river discharge on water quality indicators of a coastal lagoon. Regional Studies in Marine Science. 2020; 40: 101513. Available at: [[https://doi.org/10.1016/j.rsma.2020.101513 Link]]  

Silva A, Pinto L, Rodrigues SM, de Pablo H, Santos M, Moita T, Mateus M. A HAB warning system for shellfish harvesting in Portugal. Harmful Algae. 2016; 53: 33-39. Available at: [[http://dx.doi.org/10.1016/j.hal.2015.11.017 Link]]. 

Silva E, Garbossa LHP, Nuñer APO, Lapa KR. Hydrodynamic modelling of the dispersion and deposition of biodeposits from marine bivalve mollusc farming under neap and spring tides in Santa Catarina Island Bays. Aquaculture. 2019; 501: 507-514. Available at: [[https://doi.org/10.1016/j.aquaculture.2018.11.001 Link]]

Silva P, Martins F, Boski T, Sampath R. Modeling basin infilling processes in estuaries using two different approaches: an aggregate diffusive type model and a processed based model. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2012; 12(2): 127-129. Available at: [[http://www.aprh.pt/rgci/pdf/rgci-272_Silva.pdf Download]].

Simionesei L, Ramos TB, Brito D, Jauch E, Chambel-Leitão P, Almeida C, Neves R. Numerical simulation of soil water dynamics under stationary sprinkler irrigation with Mohid‐Land. Irrigation and Drainage. 2016; 65(1): 98-111. Available at: [[http://dx.doi.org/10.1002/ird.1944 Download]]

Simionesei L, Ramos TB, Oliveira AR, Jongen M, Darouich H, Weber K, Proença V, Domingos T, Neves R. Modeling soil water dynamics and pasture growth in the montado ecosystem using MOHID Land. Water. 2018; 10(4): 489. Available at: [[https://doi.org/10.3390/w10040489 Download]]

Simionesei L, Ramos TB, Palma J, Oliveira AR, Neves R. IrrigaSys: A web-based irrigation decision support system based on open source data and technology. Computers and Electronics in Agriculture. 2020; 178: 105822. Available at: [[https://doi.org/10.1016/j.compag.2020.105822 Link]]

Soares J, Fernandes R, Brito D, Oliveira H, Neuparth T, Martins I, Santos MM. Environmental risk assessment of accidental marine spills: A new approach combining an online dynamic Hazardous and Noxious substances database with numerical dispersion, risk and population modelling. Science of The Total Environment. 2020; 715. Available at: [[https://doi.org/10.1016/j.scitotenv.2020.136801 Link]]

Sobrinho J, de Pablo H, Campuzano F, Neves R. Coupling Rivers and Estuaries with an Ocean Model: An Improved Methodology. Water. 2021; 13(16):2284. Available at: [[https://doi.org/10.3390/w13162284 Download]]

Sobrinho J, de Pablo H, Pinto L, Neves R. Improving 3D-MOHID water model with an upscaling algorithm. Environmental Modelling & Software. 2021; 135: 104920. Available at: [[https://doi.org/10.1016/j.envsoft.2020.104920 Link]]

Sousa MC, Vaz N, Alvarez I, Gomez-Gesteira M, Dias JM. Modeling the Minho River plume intrusion into the Rias Baixas (NW Iberian Peninsula). Continental Shelf Research. 2014; 85: 30-41. Available at: [[http://dx.doi.org/10.1016/j.csr.2014.06.004 Link]].

Sousa MC, Vaz N, Alvarez I, Gomez-Gesteira M, Dias JM. Influence of the Minho River plume on the Rias Baixas (NW of the Iberian Peninsula). Journal of Marine Systems. 2014; 139: 248–260. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2014.06.012 Link]].

Taboada JJ, Prego R, Ruiz-villarreal M, Gomez-gesteira M, Montero P, Santos AP, Pérez-Villar V. Evaluation of the seasonal variations in the residual circulation in the Ría of Vigo (NW Spain) by means of a 3D baroclinic model. Estuarine, Coastal and Shelf Science. 1998; 47(5): 661-670. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0272771498903857 Link]].

Tavares LP, Lugon Jr J, da Silva JA, Wasserman JC, Rodrigues PP. Water management and urban flood mitigation: studies and proposals for the Macaé River basin in Brazil. Journal of Urban and Environmental Engineering. 2018; 12(2): 188-200. Available at: [[http://www.periodicos.ufpb.br/index.php/juee/article/view/41313 Download]]

Telles WR, Rodrigues PPGW, Silva Neto AJ. Calibração automática da plataforma MOHID empregando um método estocástico de otimização e dados reais de um evento climático extremo em Nova Friburgo‐RJ: parte 1 – preparação do modelo digital do terreno e aquisição dos dados experimentais de precipitação e nível. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería. 2017; 33(3-4): 164–170. Available at: [[http://dx.doi.org/10.1016/j.rimni.2016.04.006 Link]].

Telles WR, Rodrigues PPGW, Silva Neto AJ. Calibração automática da plataforma MOHID empregando um método estocástico de otimização e dados reais de um evento climático extremo em Nova Friburgo‐RJ: parte 2 – análise de sensibilidade e estimativa de parâmetros hidrológicos. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería. 2017; 33(3-4): 204–211. Available at: [[http://dx.doi.org/10.1016/j.rimni.2016.04.005 Link]].

Tironi A, Marin VH, Campuzano FJ. A management tool for assessing aquaculture environmental impacts in Chilean Patagonian Fjords: integrating hydrodynamic and pellets dispersion models. Environmental Management. 2010; 45(5): 953-962. Available at: [[http://dx.doi.org/10.1007/s00267-010-9467-5 Link]].

Tironi A, Marin VH, Delgado LE. Un modelo hidrodinámico 3D del humedal del Rio Cruces: cálculo del tiempo de residencia utilizando MOHID. Revista Aqua-LAC. 2014; 6(2): 50-57. Available at: [[http://www.unesco.org.uy/phi/aqualac/fileadmin/phi/aqualac/Numero_6_vol_2/05_Un_modelo_hidrodinamico_3D_del_humedal_de_rio_cruces.pdf Download]]. (In Spanish)

Toderascu R, Rusu E. Numerical simulations of the current field in the Black Sea basin. Analele Universitatii Maritime Constanta. 2013; 14(19): 177-184. Available at: [[http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=89546050 Link]].

Tosic M, Martins F, Lonin S, Izquierdo A, Restrepo JD. A practical method for setting coastal water quality targets: Harmonization of land-based discharge limits with marine ecosystem thresholds. Marine Policy. 2019; 108. Available at: [[https://doi.org/10.1016/j.marpol.2019.103641 Link]]

Tosic M, Martins F, Lonin S, Izquierdo A, Restrepo JD. Hydrodynamic modelling of a polluted tropical bay: Assessment of anthropogenic impacts on freshwater runoff and estuarine water renewal. Journal of Environmental Management. 2019; 236: 695-714. Available at: [[https://doi.org/10.1016/j.jenvman.2019.01.104 Link]].

Trancoso AR, Braunschweig F, Chambel Leitão P, Obermann M, Neves R. An advanced modelling tool for simulating complex river systems. The Science of the total environment. 2009; 407(8): 3004-3016. Available at: [[http://dx.doi.org/10.1016/j.scitotenv.2009.01.015 Link]].

Trancoso AR, Saraiva S, Fernandes L, Pina P, Leitão P, Neves R. Modelling macroalgae using a 3D hydrodynamic-ecological model in a shallow, temperate estuary. Ecological Modelling. 2005; 187(2-3): 232-246. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0304380005000918 Link]].

Tzoraki O, Nikolaidis NP, Trancoso R, Braunschweig F, Neves R. A reach-scale biogeochemical model for temporary rivers. Hydrological Processes. 2009; 23(2): 272-283. Available at: [[http://dx.doi.org/10.1002/hyp.7138 Link]].

===U-Z===
Uba F, Essandoh EO, Nyantakyi EK, Anumah P. Hydrodynamic model for operational forecasting in coastal waters of Ghana. Open Journal of Modelling and Simulation. 2020; 8(2): 99817. Available at: [[https://doi.org/10.4236/ojmsi.2020.82004 Download]]

Valle M, Chust G, Campo A, Wisz MS, Olsen SM, Garmendia JM, Borja A. Projecting future distribution of the seagrass ''Zostera noltii'' under global warming and sea level rise. Biological Conservation Biological Conservation. 2014; 170: 74–85. Available at: [[http://www.sciencedirect.com/science/article/pii/S0006320713004382 Link]].

Valentim JM, Vaz N, Silva H, Duarte B, Caçador I, Dias JM. Tagus Estuary and Ria de Aveiro salt marsh dynamics and the impact of sea level rise. Estuarine, Coastal and Shelf Science. 2013; 130:138-151. Available at: [[http://dx.doi.org/10.1016/j.ecss.2013.04.005 Link]].

Vargas CIC, Vaz N, Dias JM. An evaluation of climate change effects in estuarine salinity patterns: Application to Ria de Aveiro shallow water system. Estuarine, Coastal and Shelf Science. 2017; 189: 33-45. Available at: [[http://dx.doi.org/10.1016/j.ecss.2017.03.001 Link]].

Vaz N, Dias JM. Residual currents and transport pathways in the Tagus estuary, Portugal : the role of freshwater discharge and wind. Journal of Coastal Research. 2014; 70: 610–616. Available at: [[https://doi.org/10.2112/SI70-103.1 Link]].

Vaz N, Dias JM, Leitão P, Martins I. Horizontal patterns of water temperature and salinity in an estuarine tidal channel: Ria de Aveiro. Ocean Dynamics. 2005; 55(5-6): 416-429. Available at: [[https://doi.org/10.1007/s10236-005-0015-4 Link]].

Vaz N, Dias JM, Leitão PC, Nolasco R. Application of the Mohid-2D model to a mesotidal temperate coastal lagoon. Computers & Geosciences. 2007; 33(9): 1204-1209. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0098300407000763 Link]].

Vaz N, Dias JM, Leitão PC. Three-dimensional modelling of a tidal channel: The Espinheiro Channel (Portugal). Continental Shelf Research. 2009; 29(1): 29-41. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0278434307003330 Link]].

Vaz N, Fernandes L, Leitão PC, Dias JM, Neves R. The Tagus estuarine plume induced by wind and river runoff: Winter 2007 case study. Journal of Coastal Research. 2009; SI(56): 1090-1094. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/1090.1094_N.Vaz_ICS2009.pdf Download]].

Vaz N, Leitão PC, Dias JM. Channel-ocean exchange driven by tides and river flow: Espinheiro Channel (Portugal). Water. 2007; SI(50): 1000-1004. Available at: [[http://www.griffith.edu.au/conference/ics2007/pdf/ICS182.pdf Download]].

Vaz N, Mateus M, Dias JM. Semidiurnal and spring-neap variations in the Tagus Estuary: Application of a process-oriented hydro-biogeochemical model. Journal of Coastal Research. 2011; SI(64): 1619-1623. Available at: [[http://www.form.ics2011.pl/artic/SP64_1619-1623_N.Vaz.pdf Download]]

Vaz N, Mateus M, Pinto L, Neves R, Dias JM. The Tagus Estuary as a numerical modeling test bed: A Review. Geosciences. 2020; 10(1):4. https://doi.org/10.3390/geosciences10010004

Vaz N, Mateus M, Plecha S, Sousa MC, Leitão PC, Neves R, Dias JM. Modeling SST and chlorophyll patterns in a coupled estuary-coastal system of Portugal: The Tagus case study, Journal of Marine Systems. 2015; 147: 123–137. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2014.05.022 Link]]

Vaz N, Rodrigues JG, Mateus M, Franz G, Campuzano F, Neves R, Dias JM. Subtidal variability of the Tagus river plume in winter 2013. Science of the Total Environment. 2018; 627: 1353–1362. Available at: [[https://doi.org/10.1016/j.scitotenv.2018.01.325 Link]]

Vervoort RW, Fuentes I, Brombacher J, Degen J, Chambel-Leitão P, Santos F. Progress in developing scale-able approaches to field-scale water accounting based on remote sensing. Sustainability. 2022; 14:2732. Available at: [[https://doi.org/10.3390/su14052732 Download]]

Viegas C, Neves R, Fernandes R, Mateus M. Modelling tools to support an early alert system for bathing water quality. Environmental Engineering and Management Journal. 2012; 11(5): 907-918. Available at: [[http://www.academia.edu/1788173/Modelling_tools_to_support_an_early_alert_system_for_bathing_water_quality Link]].

Viegas CN, Nunes S. Streams contribution on bathing water quality after rainfall events in Costa do Estoril - a tool to implement an alert system for bathing water quality. Journal of Coastal Research. 2009; SI(56): 1691-1695. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/1691.1695_C.Viegas_ICS2009.pdf Download]].

Won SI, Kim SY, Kim KO. Submesoscale surface tidal, vortical, and residual circulations in a semi‐enclosed bay. Journal Geophysical Research: Ocean. 2019; 124. Available at: [[https://doi.org/10.1029/2018jc014892 Link]]

Yeon S. Chang, Jae-Youll Jin, Jin Yong Choi, Weon Mu Jeong, Sang Kwon Hyun, Chang Soo Chung, Jong Dae Do. Three dimensional numerical modeling using a multi-level nesting system for identifying a Water layer suitable for scallop farming in Tongyeong, Korea. Aquacultural Engineering. 2020; 89. Available at: [[https://doi.org/10.1016/j.aquaeng.2020.102058 Link]]

Yong-Wook N, Yong-Hyuk K. Prediction of Drifter Trajectory Using Evolutionary Computation. Discrete Dynamics in Nature and Society. 2018; Article ID 6848745: 15 pages. Available at: [[https://doi.org/10.1155/2018/6848745 Link]]

==Journal Papers By Year==

===2024===

Cloux S, Pérez P, de Pablo H, Pérez-Muñuzuri V. A regional Lagrangian model to evaluate the dispersion of floating macroplastics in the North Atlantic Ocean from land and river sources in the western coast of Spain. Marine Pollution Bulletin. 2024; 209(Part A): 117110. Available at: [[https://doi.org/10.1016/j.marpolbul.2024.117110 Download]].

Cordero-Acosta JR, Otero Díaz LJ, Higgins Álvarez AE. Influence of Fluvial Discharges and Tides on the Salt Wedge Position of a Microtidal Estuary: Magdalena River. Water. 2024; 16(8):1139. Available at: [[https://doi.org/10.3390/w16081139 Download]].

Dang HV, Joo, S, Lim J, Hur J, Shin S. Numerical model test of spilled oil transport near the Korean coasts using various input parametric models. Journal of Ocean Engineering and Technology. 2024; 38(2): 64-73. Available at: [[https://doi.org/10.26748/KSOE.2024.043 Download]].

Horta A, Oliveira AR, Azevedo L, Ramos TB. Assessing the use of digital soil maps in hydrological modeling for soil-water budget simulations - implications for water management plans in southern Portugal. Geoderma Regional. 2024; 36:e00741. Available at: [[https://doi.org/10.1016/j.geodrs.2023.e00741 Download]].

Luersen DM, Lopes AB, Franz GAS, Mildemberger D, Noernberg MA. Sediment transport trend in an erosive sandy beach: the case of Matinhos Beach, south coast of Brazil. Ocean and Coastal Research. 2024; 72(Suppl 1): e24030. Available at: [[https://doi.org/10.1590/2675-2824072.23093 Download]].

Mittal HVR, Hammoud MAER, Carrasco AK, Hoteit I, Knio O. Oil spill risk analysis for the NEOM shoreline. Scientific Reports. 2024; 14:6623. Available at: [[https://doi.org/10.1038/s41598-024-57048-4 Download]].

Oliveira AR, Ramos TB, Simionesei L, Neves R. Assessing the reliability of a physical-based model and a convolutional neural network in an ungauged watershed for daily streamflow calculation: a case study in southern Portugal. Environmental Earth Sciences. 2024; 83:215. Available at: [[https://doi.org/10.1007/s12665-024-11498-1 Download]].

Román M, Vázquez E, Viejo RM, Woodin SA, Wethey DS, Román S, Weidberg N, Troncoso JS, Mendez MM, Olabarria C. Context-dependent resilience of intertidal seagrass and venerid clams after hyposalinity stress. Marine Ecology Progress Series. 2024; 729:117-133. Available at: [[https://doi.org/10.3354/meps14516 Link]].

Santos PP, Pereira S, Zêzere JL, Reis E, Oliveira SC, Garcia RAC, Ferreira TM. Understanding flood risk in urban environments: spatial analysis of building vulnerability and hazard areas in the Lisbon metropolitan area. Natural Hazards. 2024. Available at: [[https://doi.org/10.1007/s11069-024-06731-w Download]].

===2023===

Barreiro J, Santos F, Ferreira F, Neves R, Matos JS. Development of a 1D/2D Urban Flood Model Using the Open-Source Models SWMM and MOHID Land. Sustainability. 2023; 15(1):707. Available at: [[https://doi.org/10.3390/su15010707 Download]].

Cancio NCO, Pierini JO. Suspended sediment transport in Rio Colorado agricultural basin, Argentina. Frontiers in Built Environment. 2023; 9:1142671. Available at: [[https://doi.org/10.3389/fbuil.2023.1142671 Link]]

Coimbra MRM, Benevides E, Farias RS, da Silva BCNR, Cloux S, Pérez-Muñuzuri V, Vera M, Torres R. Restricted connectivity for cobia ''Rachycentron canadum'' (Perciformes: Rachycentridae) in the Western Atlantic Ocean. Fisheries Oceanography. 2023; 1–14. Available at: [[https://doi.org/10.1111/fog.12642 Link]]

Davis L, Larionova T, Patel D, Tse D, Baquedano Juliá P, Pinto Santos P, Ferreira TM. Flood vulnerability and risk assessment of historic urban areas: Vulnerability evaluation, derivation of depth-damage curves and cost–benefit analysis of flood adaptation measures applied to the historic city centre of Tomar, Portugal. Journal of Flood Risk Management. 2023; 16(3): e12908. Available at: [[https://doi.org/10.1111/jfr3.12908 Download]].

de Almeida Duarte LF, Braga Ribeiro R, Val de Medeiros T, Rodriguez Scheppis W, Teixeira Gimiliani G. Are mangroves hotspots of marine litter for surrounding beaches? Hydrodynamic modeling and quali-quantitative analyses of waste in southeastern Brazil. Regional Studies in Marine Science. 2023; 67: 103177. Available at: [[https://doi.org/10.1016/j.rsma.2023.103177 Link]]

Lim B-J, Chang Y-S, Cho Y-K. Effects of stepwise tidal flat reclamation on tidal evolution in the East China and Yellow Sea. Environmental Research Letters. 2023; 18(10):104041. Available at: [[https://doi.org/10.1088/1748-9326/acf729 Download]].

Hammoud MAER, Mittal HVR, Le Maître O, Hoteit I, Knio O. Variance-based sensitivity analysis of oil spill predictions in the Red Sea region. Frontiers in Marine Science. 2023; 10:1185106. Available at: [[https://doi.org/10.3389/fmars.2023.1185106 Download]].

Manso-Narvarte I, Caballero A, Hernández-Carrasco I, Orfila A, Santos Mocoroa M, Cotano U, Jordà G, Declerck A, Delpey M, Rubio A. Effect of circulation at early life stages of European anchovy in the Bay of Biscay from observational data and a Lagrangian approach. Journal of Marine Systems. 2023; 103938. Available at: [[https://doi.org/10.1016/j.jmarsys.2023.103938 Download]].

Mendonça F, Martins F, Janeiro J. SMS-Coastal, a New Python Tool to Manage MOHID-Based Coastal Operational Models. Journal of Marine Science and Engineering. 2023; 11(8):1606. Available at: [[https://doi.org/10.3390/jmse11081606 Download]].

Picado A, Vaz N, Alvarez I, Dias JM. Modelling coastal upwelling off NW Iberian Peninsula: New insights on the fate of phytoplankton blooms. Science of The Total Environment. 2023; 874: 162416. Available at: [[https://doi.org/10.1016/j.scitotenv.2023.162416 Link]]

Ramos TB, Oliveira AR, Darouich H, Gonçalves MC, Martínez-Moreno FJ, Rodríguez MR, Vanderlinden K, Farzamian M. Field-scale assessment of soil water dynamics using distributed modeling and electromagnetic conductivity imaging. Agricultural Water Management. 2023; 288: 108472. Available at: [[https://doi.org/10.1016/j.agwat.2023.108472 Download]]

Rhomad H, Khalil K, Elkalay K. Water quality modeling in Atlantic Region: Review, science mapping and future research directions. Water Resources Management. 2023; 37:451–499. Available at: [[https://doi.org/10.1007/s11269-022-03382-z Link]] 

Sircar A, Bist N, Yadav K. A comprehensive review on exploration and exploitation of offshore geothermal energy. Marine Systems & Ocean Technology. 2023; 17: 135–146. Available at: [[https://doi.org/10.1007/s40868-022-00120-3 Link]]

Sobrinho J, de Pablo H, Pinto L, Neves R. Upscaling local domains in regional domains: An offline nudging approach. Environmental Modelling & Software. 2023; 161:105626. Available at: [[https://doi.org/10.1016/j.envsoft.2023.105626 Link]]

Souza LNN de, Lugon Junior J. Study of the hydrological impact of the growth of a residential neighborhood on urban drainage – A case study at the city of Macaé, Rio de Janeiro, Brazil. Ciência E Natura. 2023; 45:e16. Available at: [[https://periodicos.ufsm.br/cienciaenatura/article/view/68751 Download]] 

Torres-Bejarano F, García-Gallego J, Salcedo-Salgado J. Numerical modeling of nutrient transport to assess the agricultural impact on the trophic state of reservoirs. International Soil and Water Conservation Research. 2023; 11(1): 197-212. Available at: [[https://doi.org/10.1016/j.iswcr.2022.06.002 Download]]

Weidberg N, López Chiquillo LK, Román S, Román M, Vázquez E, Olabarria C, Woodin SA, Wethey DS. Assessing high resolution thermal monitoring of complex intertidal environments from space: The case of ECOSTRESS at Rias Baixas, NW Iberia. Remote Sensing Applications: Society and Environment. 2023; 32: 101055. Available at: [[https://doi.org/10.1016/j.rsase.2023.101055 Download]]

===2022===

Campuzano F, Santos F, Simionesei L, Oliveira AR, Olmedo E, Turiel A, Fernandes R, Brito D, Alba M, Novellino A, Neves R. Framework for improving land boundary conditions in ocean regional products. Journal of Marine Science and Engineering. 2022; 10(7):852. Available at: [[https://doi.org/10.3390/jmse10070852 Download]].

Cloux S, Allen-Perkins S, de Pablo H, Garaboa-Paz D, Montero P, Pérez Muñuzuri V. Validation of a Lagrangian model for large-scale macroplastic tracer transport using mussel-peg in NW Spain (Ría de Arousa). Science of The Total Environment. 2022; 822:153338. Available at: [[https://doi.org/10.1016/j.scitotenv.2022.153338 Download]].

de Pablo H, Sobrinho J, Garaboa-Paz D, Fonteles C, Neves R, Gaspar MB. The influence of the river discharge on residence time, exposure time and integrated water fractions for the Tagus Estuary (Portugal). Frontiers in Marine Science. 2022; 8:734814. Available at: [[https://doi.org/10.3389/fmars.2021.734814 Download]].

de Pablo H, Sobrinho J, Nunes S, Correia A, Neves R, Gaspar MB. Climatology and nutrient fluxes in the Tagus estuary: A coupled model application. Estuarine, Coastal
and Shelf Science. 2022; 279:108129. Available at: [[https://doi.org/10.1016/j.ecss.2022.108129 Link]].

Diez-Caballero K, Troiteiro S, García-Alba J, Vidal JR, González M, Ametller S, Juan R. Environmental compatibility of the Parc Tramuntana offshore wind project in relation to marine ecosystems. Journal of Marine Science and Engineering. 2022; 10(7):898. Available at: [[https://doi.org/10.3390/jmse10070898 Download]].

Ha SY, Yoon H-S, Kim Y-T. A study on the prediction of the surface drifter trajectories in the Korean Strait. Journal of Korean Society of Coastal and Ocean Engineers. 2022; 34(1): 11-18. Available at: [[https://doi.org/10.9765/KSCOE.2022.34.1.11 Download]]. (In Korean)

Kim N-H, Baek D, Kwon J-i, Choi J-Y, Heo K-Y. Strategy for additional buoy array installation in operational buoy-observation network in Korea. Ocean Engineering. 2022; 112746. Available at: [[https://doi.org/10.1016/j.oceaneng.2022.112746 Link]].

Jackson M, Fossati M, Solari S. Sea levels dynamical downscaling and climate change projections at the Uruguayan coast. Frontiers in Marine Science. 2022; 9:846396. Available at: [[https://doi.org/10.3389/fmars.2022.846396 Download]].

Lourenço M da S, Mafra APP, Kalas F de A, Rodrigues PPGW, Ferreira MIP, Junior JL. Hydrological modelling applied to flooding assessment in the urban coastal city in Brazil. Ciência E Natura 2022; 44:e18. Available at: [[https://doi.org/10.5902/2179460X67163 Download]].

Lubis MZ, Surya G, Pamungkas DS, Subhan B, Manik HM, Kausarian H, Anurogo W. Characteristics of waters during transitional season, Senimba waters. Trends in Sciences. 2022; 19(11): 4495. Available at: [[https://doi.org/10.48048/tis.2022.4495 Download]].

Morato T, Juliano M, Pham CK, Carreiro-Silva M, Martins I, Colaço A. Modelling the dispersion of seafloor massive sulphide mining plumes in the mid Atlantic ridge around the Azores. Frontiers in Marine Science. 2022; 9:910940. Available at: [[https://doi.org/10.3389/fmars.2022.910940 Download]].

Nogueira E, Bravo I, Montero P, Díaz-Tapia P, Calvo S, Ben-Gigirey B, Figueroa RI, Garrido JL, Ramilo I, Lluch N, Rossignoli AE, Riobó P, Rodríguez F. HABs in coastal upwelling systems: Insights from an exceptional red tide of the toxigenic dinoflagellate ''Alexandrium minutum''. Ecological Indicators. 2022; 137:108790. Available at: [[https://doi.org/10.1016/j.ecolind.2022.108790 Download]].

Oliveira AR, Ramos TB, Simionesei L, Gonçalves MC, Neves R. Modeling streamflow at the Iberian Peninsula scale using MOHID-Land: Challenges from a coarse scale approach. Water. 2022; 14(7):1013. Available at: [[https://doi.org/10.3390/w14071013 Download]].

Picado A, Abreu J, Carvalho DM, Santos H, Leitão P, Rodrigues J, Chambel Leitão J, Dias JM. Optimization of safe navigability conditions in shallow inland waters: The Routinav app. Ocean Engineering. 2022; 259: 111946. Available at: [[https://www.sciencedirect.com/science/article/pii/S0029801822012823 Download]].

Pita E, Pita P, Sánchez-Barriga M, Martín L, Olalde J. Design of marine outfalls for reducing environmental impact of brine. Desalination and Water Treatment. 2022; 259: 300-307. Available at: [[https://doi.org/10.5004/dwt.2022.28576 Link]].

Rhomad H, Khalil K, Neves R, Sobrinho J, Dias JM, Elkalay K. Three-dimensional hydrodynamic modelling of the Moroccan Atlantic coast: A case study of Agadir bay. Journal of Sea Research. 2022; 188: 102272. Available at: [[https://doi.org/10.1016/j.seares.2022.102272 Download]].

Rodrigues D, Fernandes A, Filippo A, Kjerfve B, Pinto L, Neves R. Low-frequency circulation on the Ilha Grande channel, Rio de Janeiro, Brazil. Regional Studies in Marine Science. 2022; 50:102129. Available at: [[https://doi.org/10.1016/j.rsma.2021.102129 Link]].

Rosa A, Cardoso C, Vieira R, Faria R, Oliveira AR, Navarro G, Caldeira RMA. Impact of flash flood events on the coastal waters around Madeira island: The “Land Mass Effect”. Frontiers in Marine Science. 2022; 8:749638. Available at: [[https://doi.org/10.3389/fmars.2021.749638 Download]]. 

Vervoort RW, Fuentes I, Brombacher J, Degen J, Chambel-Leitão P, Santos F. Progress in developing scale-able approaches to field-scale water accounting based on remote sensing. Sustainability. 2022; 14:2732. Available at: [[https://doi.org/10.3390/su14052732 Download]].

Vlasceanu E, Bosneagu R, Scurtu IC, Marin D, Mateescu R. Investigations on the marine current regime in the maritime port of Constanta and its adjacent areas. Scientific Bulletin of Naval Academy. 2022; XXV: 128-135. Available at: [[https://www.anmb.ro/buletinstiintific/buletine/2022_Issue1/03_NTM/128-135.pdf Download]].

===2021===

Barros YT, Lugon Jr J, Kalas FA, Watts Rodrigues PPG, da Silva Neto A. Identificação de trajetórias com uso das plataformas MoHid e GRIPP para aplicações ambientais. Proceeding Series of the Brazilian Society of Computational and Applied Mathematics. 2021; 8(1): 010423. Available at: [[https://doi.org/10.5540/03.2021.008.01.0423 Download]]

Contreras-Tereza VK, Salas-de-León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. The 2010 Gulf of Mexico oil spill: a modeling study. Arabian Journal of Geosciences. 2021; 14:636. Available at: [[https://doi.org/10.1007/s12517-021-06959-x Link]]

Contreras‐Tereza VK, Salas‐de‐León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. Tsunami run‐up along the Zihuatanejo region, Mexican Pacific Coast: A modelling study. Journal of Flood Risk Management. 2021; 14:e12669. Available at: [[https://doi.org/10.1111/jfr3.12669 Download]]

Correia S, Picado A, de Montaudouin X, Freitas R, Rocha RJM, Dias JM, Magalhães L. Parasite assemblages in a bivalve host associated with changes in hydrodynamics. Estuaries and Coasts. 2021; 44:1036–1049. Available at: [[https://doi.org/10.1007/s12237-020-00848-4 Link]]

Elvas LB, Mataloto BM, Martins AL, Ferreira JC. Disaster management in smart cities. Smart Cities. 2021; 4(2):819-839. Available at: [[https://doi.org/10.3390/smartcities4020042 Download]]

Evaristo A, Pinto L, Ascione Kenov I, Neves R. Hidrodinâmica da Baía do Lobito. Parte I - Correntes de maré. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 101-110. Available at: [[http://dx.doi.org/10.5894/rgci-n406 Download]]. (In Portuguese)

Evaristo A, Neves R, Pinto L, Sobrinho J. Hidrodinâmica da Baía do Lobito. Parte II - Escoamento Baroclínico. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 111-125. Available at: [[http://dx.doi.org/10.5894/rgci-n407 Download]]. (In Portuguese) 

Franz G, Garcia CAE, Pereira J, de Freitas Assad LP, Rollnic M, Garbossa LHP, da Cunha LC, Lentini CAD, Nobre P, Turra A, Trotte-Duhá JR, Cirano M, Estefen SF, Lima JAM, Paiva AM, Noernberg MA, Tanajura CAS, Moutinho JL, Campuzano F, Pereira ES, Lima AC, Mendonça LFF, Nocko H, Machado L, Alvarenga JBR, Martins RP, Böck CS, Toste R, Landau L, Miranda T, dos Santos F, Pellegrini J, Juliano M, Neves R, Polejack A. Coastal ocean observing and modeling systems in Brazil: Initiatives and future perspectives. Frontiers in Marine Science. 2021; 8:681619. Available at: [[https://doi.org/10.3389/fmars.2021.681619 Download]] 

Garbossa LHP, Santos AA, Lapa KR. Seaweed dispersion under different environmental scenarios based on branches settling velocity and hydrodynamic lagrangian model. Regional Studies in Marine Science. 2021; 47: 101909. Available at: [[https://doi.org/10.1016/j.rsma.2021.101909 Download]]

Herrera M, Wethey DS, Vázquez E, Macho G. Living on the edge: reproductive cycle of a boreal barnacle at its southernmost distribution limit. Marine Biology. 2021; 168: 100. Available at: [[https://doi.org/10.1007/s00227-021-03909-9 Link]]

Jackson M, Sienra G, Santoro P, Fossati M. Temporal and spatial variability scales of salinity at a large microtidal estuary. Journal of Marine Science and Engineering. 2021; 9(8):860. Available at: [[https://doi.org/10.3390/jmse9080860 Download]] 

Keramea P, Spanoudaki K, Zodiatis G, Gikas G, Sylaios G. Oil spill modeling: A critical review on current trends, perspectives, and challenges. Journal of Marine Science and Engineering. 2021; 9(2):181. Available at: [[https://doi.org/10.3390/jmse9020181 Download]] 

Kim M, Ligaray M, Kwon YS, Kim S, Baek S, Pyo JC, Baek G, Shin J, Kim J, Lee C, Kim YM, Cho KH. Designing a marine outfall to reduce microbial risk on a recreational beach: Field experiment and modeling. Journal of Hazardous Materials. 2021; 409:124587. Available at: [[https://doi.org/10.1016/j.jhazmat.2020.124587 Link]]

Mills L, Janeiro J, Martins F. Effects of sea level rise on salinity and tidal flooding patterns in the Guadiana Estuary. Journal of Water and Climate Change. 2021; 12(7): 2933–2947. Available at: [[https://doi.org/10.2166/wcc.2021.202 Download]] 

Mittal HVR, Langodan S, Zhan P, Li S, Knio O, Hoteit I. Hazard assessment of oil spills along the main shipping lane in the Red Sea. Scientific Reports. 2021; 11:17078. Available at: [[https://doi.org/10.1038/s41598-021-96572-5 Download]] 

Monteiro CE, Cobelo-García A, Correia dos Santos MM, Caetano M. Drivers of Rh and Pt variability in the water column of a hydrodynamic estuary: Effects of contrasting environments. Science of The Total Environment. 2021; 760: 143909. Available at: [[https://doi.org/10.1016/j.scitotenv.2020.143909 Link]]

Oliveira AR, Ramos TB, Simionesei L, Gonçalves MC, Neves R. Modeling streamflow at the Iberian Peninsula scale using MOHID-Land: Challenges from a coarse scale approach. Water. 2022; 14(7):1013. Available at: [[https://doi.org/10.3390/w14071013 Download]]

Otero LJ, Hernandez HI, Higgins Ae, Restrepo JC, Álvarez OA. Interannual and seasonal variability of stratification and mixing in a high-discharge micro-tidal delta: Magdalena River. Journal of Marine Systems. 2021; 224: 103621. Available at: [[https://doi.org/10.1016/j.jmarsys.2021.103621 Link]]

Ramos TB, Simionesei L, Oliveira AR, Neves R, Darouich H. Exploring the use of vegetation indices for validating crop transpiration fluxes computed with the MOHID-Land Model. Application to vineyard. Agronomy. 2021; 11(6): 1228. Available at: [[https://doi.org/10.3390/agronomy11061228 Download]]

Rhomad H, Khalil K, Neves R, Bougadir B, Elkalay K. Modeling investigation of the nutrients and phytoplankton dynamics in the Moroccan Atlantic coast: A case study of Agadir coast. Ecological Modelling. 2021; 447:109510. Available at: [[https://doi.org/10.1016/j.ecolmodel.2021.109510 Link]]

Rosas E, Martins F, Janeiro J. Marine litter on the coast of the Algarve: main sources and distribution using a modeling approach. Journal of Marine Science and Engineering. 2021; 9(4):412. Available at: [[https://doi.org/10.3390/jmse9040412 Download]]

Ruiz MS, Harari J, Ribeiro RB, Sampaio AFP. Numerical modelling of storm tides in the Estuarine System of Santos, São Vicente and Bertioga (SP, Brazil). Regional Studies in Marine Science. 2021; 44: 101791. Available at: [[https://doi.org/10.1016/j.rsma.2021.101791 Link]]

Salamanca JM, Álvarez-Silva O, Higgins A, Tadeo F. Analysis of the intake locations of salinity gradient plants using hydrodynamic and membrane models. Water. 2021; 13(9):1133. Available at: [[https://doi.org/10.3390/w13091133 Download]]

Sales DS, Lugon Junior J, Oliveira VPS, Silva Neto AJ. Rainfall input from WRF-ARW atmospheric model coupled with MOHID land hydrological model for flow simulation in the Paraíba do Sul River - Brazil. Journal of Urban & Environmental Engineering. 2021; 15(2): 188-203. Available at: [[https://periodicos.ufpb.br/index.php/juee/article/view/55310/34978 Download]]

Salisbury JE, Jönsson BF, Mannino A, Kim W, Goes JI, Choi J.-Y, Concha JA. Assessing net growth of phytoplankton biomass on hourly to annual time scales using the Geostationary Ocean Color Instrument. Geophysical Research Letters. 2021; 48: e2021GL095528. Available at: [[https://doi.org/10.1029/2021GL095528 Download]]

Sánchez-Gutiérrez R, Gómez-Castro C. Approaching to water quality modeling processes in a subwatershed. The Virilla River case in Costa Rica. Uniciencia. 2021; 35(1): 71-89. Available at: [[https://doi.org/10.15359/ru.35-1.5 Download]] (In Spanish)

Sobrinho J, de Pablo H, Campuzano F, Neves R. Coupling rivers and estuaries with an ocean model: An improved methodology. Water. 2021; 13(16):2284. Available at: [[https://doi.org/10.3390/w13162284 Download]]

Sobrinho J, de Pablo H, Pinto L, Neves R. Improving 3D-MOHID water model with an upscaling algorithm. Environmental Modelling & Software. 2021; 135:104920. Available at: [[https://doi.org/10.1016/j.envsoft.2020.104920 Link]]

Sotillo MG, Campuzano F, Guihou K, Lorente P, Olmedo E, Matulka A, Santos F, Amo-Baladrón MA, Novellino A. River freshwater contribution in operational ocean models along the European Atlantic Façade: Impact of a new river discharge forcing Data on the CMEMS IBI Regional Model solution. Journal of Marine Science and Engineering. 2021; 9(4):401. Available at: [[https://doi.org/10.3390/jmse9040401 Download]]

Souza N, Lugon Jr J, Yamasaki E, da Silva Neto AJ, Kyriakides I. Parameter sensitivity study and water property influence: An evaluation of the determining factors on oil drifting effect. Revista Cereus. 2021; 13(1): 186-198. Available at: [[https://doi.org/10.18605/2175-7275/cereus.v13n1p186-198 Download]]

===2020===

Capet A, Fernández V, She J, Dabrowski T, Umgiesser G, Staneva J, Mészáros L, Campuzano F, Ursella L, Nolan G, El Serafy G. Operational modeling capacity in European Seas — An EuroGOOS perspective and recommendations for improvement. Frontiers in Marine Science. 2020; 7: 129. Available at: [[https://doi.org/10.3389/fmars.2020.00129 Download]] 

Ceregeiro JM, Pinheiro MD, Campuzano FJ. Tidal farm electric energy production in the Tagus Estuary. Revista de Gestão Costeira Integrada. 2020; 20(1): 61-78. Available at: [[https://doi.org/10.5894/rgci-n281 Download]] 

Chang YS, Jin J-Y, Choi JY, Jeong WM, Hyun SK, Chung CS, Do JD. Three dimensional numerical modeling using a multi-level nesting system for identifying a water layer suitable for scallop farming in Tongyeong, Korea. Aquacultural Engineering. 2020; 89. Available at: [[https://doi.org/10.1016/j.aquaeng.2020.102058 Link]]

Choi JW, Kwon JI, Heo KY, Choi JY. Hindcasting of search and rescue cases using the trajectory model based on KOOS (Korea Operational Oceanographic System). Journal of Coastal Research (2020) 95 (SI): 900–904. Available at: [[https://doi.org/10.2112/SI95-175.1 Link]]

Fonseca VF, Reis-Santos P, Duarte B, Cabral HN, Caçador MI, Vaz N, Dias JM, Pais MP. Roving pharmacies: Modelling the dispersion of pharmaceutical contamination in estuaries. Ecological Indicators. 2020; 115: 106437. Available at: [[https://doi.org/10.1016/j.ecolind.2020.106437 Link]] 

Hermansyah H, Ningsih NS, Nabil N, Tarya A, Syahruddin S. Numerical modeling of tidal current patterns using 3-Dimensional MOHID in Balikpapan Bay, Indonesia. Jurnal Ilmiah Perikanan dan Kelautan. 2020; 12(1): 9–20. Available at: [[http://dx.doi.org/10.20473/jipk.v12i1.16257 Download]] 

Lee C, Choi H-W, Park J, Kim J, Park J. Derivation of candidate sites for a tidal current-pumped storage hybrid power plant using GIS-based site selection analysis. Journal of the Korean Association of Geographic Information Studies. 2020; 23(4): 184–207. Available at: [[https://doi.org/10.11108/KAGIS.2020.23.4.184 Download]] (In Korean) 

Leitão P, Silva A, Ribeiro J, Carneiro E, Pinto J. Avaliação de taxas de assoreamento no estuário do rio Sado. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2020; 20(2): 121-130. Available at: [[http://dx.doi.org/10.5894/rgci-n300 Download]]. (In Portuguese)

Locatelli L, Russo B, Acero Oliete A, Sánchez Catalán JC, Martínez-Gomariz E, Martínez M. Modeling of ''E. coli'' distribution for hazard assessment of bathing waters affected by combined sewer overflows. Natural Hazards and Earth System Sciences. 2020; 20(5): 1219-1232. Available at: [[http://dx.doi.org/10.5194/nhess-20-1219-2020 Download]].

Mills L, Janeiro J, Neves AAS, Martins F. The impact of sea level rise in the Guadiana estuary. Journal of Computational Science. 2020; 44: 101169. Available at: [[https://doi.org/10.1016/j.jocs.2020.101169 Link]]

Nam YW, Cho HY, Kim DY, Moon SH, Kim YH. An improvement on estimated drifter tracking through machine learning and evolutionary search. Applied Sciences. 2020; 10(22): 8123. Available at: [[https://doi.org/10.3390/app10228123 Link]] 

Oliveira AR, Ramos TB, Simionesei L, Pinto L, Neves R. Sensitivity analysis of the MOHID-Land hydrological model: A case study of the Ulla River basin. Water. 2020; 12(11): 3258. Available at: [[https://doi.org/10.3390/w12113258 Download]].

Paiva, PM, Lugon Junior J, Calderón EN, Juliano MM, Molisani, M. Decommissioning of subsea oil and gas production pipelines: hydrodynamic modeling for preliminary assessment of sediment resuspension and burial onto benthic organisms. Journal of Integrated Coastal Zone Management. 2020: 20(3): 161-168. Available at: [[http://dx.doi.org/10.5894/rgci-n286 Download]]

Pehlivanoglu-mantas E, Onay M, Martíns F. Oil spill modeling in East Mediterranean. Gazi Üniversitesi Mühendislik Mimarlık Fakültesi Dergisi. 2020; 35(4): 1737-1750. Available at: [[http://doi.org/10.17341/gazimmfd.534139 Download]] (In Turkish)

Rodríguez C, Fossatti M, Carrizo D, Sánchez-García L, Teixeira de Mello F, Weinstein F, Lozoya JP. Mesoplastics and large microplastics along a use gradient on the Uruguay Atlantic coast: Types, sources, fates, and chemical loads. Science of The Total Environment. 2020; 721: 137734. Available at: [[https://doi.org/10.1016/j.scitotenv.2020.137734 Link]] 

Saraiva S, Freitas V, Ozório R, Rato A, Joaquim S, Matias D, Neves R. Mechanistic approach for oyster growth prediction under contrasting culturing conditions. Aquaculture. 2020; 522: 735105. Available at: [[https://doi.org/10.1016/j.aquaculture.2020.735105 Link]]  

Seiler LMN, Fernandes EHL, Siegle E. Effect of wind and river discharge on water quality indicators of a coastal lagoon. Regional Studies in Marine Science. 2020; 40: 101513. Available at: [[https://doi.org/10.1016/j.rsma.2020.101513 Link]]  

Simionesei L, Ramos TB, Palma J, Oliveira AR, Neves R. IrrigaSys: A web-based irrigation decision support system based on open source data and technology. Computers and Electronics in Agriculture. 2020; 178: 105822. Available at: [[https://doi.org/10.1016/j.compag.2020.105822 Link]] 

Soares J, Fernandes R, Brito D, Oliveira H, Neuparth T, Martins I, Santos MM. Environmental risk assessment of accidental marine spills: A new approach combining an online dynamic hazardous and noxious substances database with numerical dispersion, risk and population modelling. Science of The Total Environment. 2020; 715. Available at: [[https://doi.org/10.1016/j.scitotenv.2020.136801 Link]]

Uba F, Essandoh EO, Nyantakyi EK, Anumah P. Hydrodynamic model for operational forecasting in coastal waters of Ghana. Open Journal of Modelling and Simulation. 2020; 8(2): 99817. Available at: [[https://doi.org/10.4236/ojmsi.2020.82004 Download]]

Vaz N, Mateus M, Pinto L, Neves R, Dias JM. The Tagus Estuary as a numerical modeling test bed: A Review. Geosciences. 2020; 10(1):4. https://doi.org/10.3390/geosciences10010004

===2019===

Almeida C, Ramos TB, Sobrinho J, Neves R, Proença de Oliveira R. An integrated modelling approach to study future water demand vulnerability in the Montargil Reservoir basin, Portugal. Sustainability. 2019; 11(1), 206. Available at: [[https://doi.org/10.3390/su11010206 Download]]

Calero Quesada MC, García-Lafuente J, Garel E, Delgado Cabello J, Martins F, Moreno-Navas J. Effects of tidal and river discharge forcings on tidal propagation along the Guadiana Estuary. Journal of Sea Research. 2019; 146: 1-13. Available at: [[https://doi.org/10.1016/j.seares.2019.01.006 Link]]

Canuto N, Ramos TB, Oliveira AR, Simionesei L, Basso M, Ramiro Neves. Influence of reservoir management on Guadiana streamflow regime. Journal of Hydrology: Regional Studies. 2019; 25: 100628. Available at: [[https://doi.org/10.1016/j.ejrh.2019.100628 Link]]

de Pablo H, Sobrinho J, Garcia M, Campuzano F, Juliano M. Validation of the 3D-MOHID Hydrodynamic Model for the Tagus Coastal Area. Water. 2019; 11: 1–21. Available at: [[https://doi.org/10.3390/w11081713 Link]]

Declerck D, Delpey M, Rubio A, Ferrer L, Basurko OC, Mader J, Louzao M. Transport of floating marine litter in the coastal area of the south-eastern Bay of Biscay: A Lagrangian approach using modelling and observations. Journal of Operational Oceanography. 2019. Available at: [[https://doi.org/10.1080/1755876X.2019.1611708 Download]]

Garneau C, Duchesne S, St-Hilaire A. Comparison of modelling approaches to estimate trapping efficiency of sedimentation basins on peatlands used for peat extraction. Ecological Engineering. 2019; 133: 60-68. Available at: [[https://doi.org/10.1016/j.ecoleng.2019.04.025 Link]]

Hamidi-Razi H, Mazaheri M, Carvajalino-Fernández M, Vali-Samani J. Investigating the restoration of Lake Urmia using a numerical modelling approach. Journal of Great Lakes Research. 2019; 45(1): 87-97. Available at: [[https://doi.org/10.1016/j.jglr.2018.10.002 Link]]

Lindo-Atichati D, Montero P, Rodil R, Benito Quintana J, Miró M. Modeling dispersal of UV filters in estuaries. Environmental Science & Technology. 2019; 53(3): 1353-1363. Available at: [[https://doi.org/10.1021/acs.est.8b03725 Link]]

Lugon Jr. J, Kalas FA, Rodrigues PPGW, Juliano M, Neto HG, Jeveaux JL, Silva Neto AJ. Application of MOHID platform to simulate the drift of cetaceans stranded in coastal regions. A case study in the Paulista coastline. Revista Cereus. 2019; 11(3): 178-189.  Available at: [[https://doi.org/10.18605/2175-7275/cereus.v11n3p178-189 Download]]

Lugon Jr. J, Kalas F de A, Rodrigues PPGW, Jeveaux JL, Neto HG, Juliano MM, da Silva Neto AJ. Lagrangian trajectory simulation of floating objects in the State of São Paulo coastal region. Defect and Diffusion Forum. 2019; 396: 42–49.  Available at: [[https://doi.org/10.4028/www.scientific.net/ddf.396.42 Link]]

Lugon Jr. J, Tavares LP, Kalas F, Rodrigues PP, Wasserman JC. Reservoir implantation for flood dampening in the Macaé River basin using the Mohid Land model. Ciência e Natura. 2019; 41: e29. Available at: [[http://dx.doi.org/10.5902/2179460X31860 Link]]

Martins I, Dias E, Ilarri MI, Campuzano FJ, Pinto L, Santos MM, Antunes C. Antagonistic effects of multiple stressors on macroinvertebrate biomass from a temperate estuary (Minho estuary, NW Iberian Peninsula). Ecological Indicators. 2019; 101: 792-803. Available at: [[https://doi.org/10.1016/j.ecolind.2019.01.065 Link]]

Mendes J, Leitão P, Chambel Leitão J, Bartolomeu S, Rodrigues J, Dias JM. Improvement of an operational forecasting system for extreme tidal events in Santos Estuary (Brazil). Geosciences. 2019; 9(12): 511. Available at: [[https://doi.org/10.3390/geosciences9120511 Download]]

Park J-S, Lee C-Y, Park J-S. Choi H-W, Kp D-H, Lee J-L. Assessment of tidal stream energy resources using a numerical model in Southwestern Sea of Korea. Ocean Science Journal. 2019; 54: 529–541. Available at: [[https://doi.org/10.1007/s12601-019-0038-2 Link]]

Pierini JO, Campuzano FJ, Leitão PC, Gómez EA, Neves RJ. Atmospheric influence over the residence time in the Bahia Blanca Estuary, Argentina. Thalassas. 2019; 35(1): 275–286. Available at: [[https://doi.org/10.1007/s41208-018-0120-z Link]]

Razi HH, Samani JMV. Investigating the effectiveness of Urmia Lake different restoration scenarios using a 2D hydrodynamic model. Journal of Civil and Environmental Engineering. 2019; 49.2(95): 71-81. Available at: [[https://ceej.tabrizu.ac.ir/article_9299.html?lang=en Link]].

Sagarduy M, Courtois S, Del Campo A, Garmendia JM, Petrau A. Differential decay and prediction of persistence of Enterococcus spp. and Escherichia coli culturable cells and molecular markers in freshwater and seawater environments. International Journal of Hygiene and Environmental Health. 2019; 222(4): 695-704. Available at: [[https://doi.org/10.1016/j.ijheh.2019.04.011 Link]]

Silva E, Garbossa LHP, Nuñer APO, Lapa KR. Hydrodynamic modelling of the dispersion and deposition of biodeposits from marine bivalve mollusc farming under neap and spring tides in Santa Catarina Island Bays. Aquaculture. 2019; 501: 507-514. Available at: [[https://doi.org/10.1016/j.aquaculture.2018.11.001 Link]]

Tosic M, Martins F, Lonin S, Izquierdo A, Restrepo JD. A practical method for setting coastal water quality targets: Harmonization of land-based discharge limits with marine ecosystem thresholds. Marine Policy. 2019; 108. Available at: [[https://doi.org/10.1016/j.marpol.2019.103641 Link]]

Tosic M, Martins F, Lonin S, Izquierdo A, Restrepo JD. Hydrodynamic modelling of a polluted tropical bay: Assessment of anthropogenic impacts on freshwater runoff and estuarine water renewal. Journal of Environmental Management. 2019; 236: 695-714. Available at: [[https://doi.org/10.1016/j.jenvman.2019.01.104 Link]]

Vaz N, Vaz L, Serôdio J, Dias JM. A modeling study of light extinction due to cohesive sediments in a shallow coastal lagoon under well mixed conditions. Science of The Total Environment. 2019; 694. Available at: [[https://doi.org/10.1016/j.scitotenv.2019.133707 Link]]

Won SI, Kim SY, Kim KO. Submesoscale surface tidal, vortical, and residual circulations in a semi‐enclosed bay. Journal Geophysical Research: Ocean. 2019; 124. Available at: [[https://doi.org/10.1029/2018jc014892 Download]]

===2018===

Angeletti S, Pierini JO, Cervellini PM. Suspended sediment contribution resulting from bioturbation in intertidal sites of a SW Atlantic mesotidal estuary: data analysis and numerical modelling. Scientia Marina. 2018; 82(4): 245-256. Available at: [[http://dx.doi.org/10.3989/scimar.04799.07A Download]]

Bartolomeu S, Malhadas MS, Ribeiro J, Leitão PC, Dias JM. Influence of MeteOcean processes on MSYM sea level predictions in the Malacca Straits. Modern Management Forum. 2018; 2(2): 1-17. Available at: [[http://dx.doi.org/10.18686/mmf.v2i1.1069 Download]]

Brito D, Ramos TB, Gonçalves MC, Morais M, Neves R. Integrated modelling for water quality management in a eutrophic reservoir in south-eastern Portugal.Environmental Earth Sciences. 2018; 77(2): 40. Available at: [[https://doi.org/10.1007/s12665-017-7221-5 Link]] 

Desmit X, Thieu V, Billen G, Campuzano F, Dulière V, Garnier J, Lassaletta L, Ménesguen A, Neves R, Pinto L, Silvestre M, Sobrinho JL, Lacroix G. Reducing marine eutrophication may require a paradigmatic change. Science of The Total Environment. 2018; 635: 1444-1466. Available at: [[https://doi.org/10.1016/j.scitotenv.2018.04.181 Link]] 

Figueiredo D, Dos Santos A, Mateus M, Pinto L. Hydrodynamic modelling of Port Foster, Deception Island, Antarctica.  Antarctic Science. 2018; 115-124. Available at: [[http://dx.doi.org/10.1017/S0954102017000463 Link]].

Lugon Jr. J, Paiva PM, Neto AJS. Estimativa do diâmetro das gotículas resultantes do blowout de um poço de petróleo – estudo de sensibilidade. Revista Mundi Engenharia, Tecnologia e Gestão. 2018; 3(3):105. Available at: [[http://dx.doi.org/10.21575/25254782rmetg2018vol3n3635 Download]] (In Portuguese)

Lee J-H, Lim B-J, Kim D-Y, Park S-H, Chang Y-S. The validation of MOHID regional ocean circulation model around the East Asian Seas in 2016. Journal of the Korean Earth Science Society. 2018; 39(5): 436-457. Available at: [[https://doi.org/10.5467/JKESS.2018.39.5.436 Download]] (In Korean)

Mateus M, da Silva Vieira R, Almeida C, Silva M, Reis F. ScoRE—A Simple Approach to Select a Water Quality Model. Water. 2018; 10(12): 1811. Available at: [[https://doi.org/10.3390/w10121811 Download]]

Nam Y-W, Kim Y-H. Prediction of drifter trajectory using evolutionary computation. Discrete Dynamics in Nature and Society. 2018; 2018:6848745. Available at: [[https://doi.org/10.1155/2018/6848745 Download]]

Oliveira AP, Pilar-Fonseca T, Cabeçadas G, Mateus M. Local variability of CO<sub>2</sub> partial pressure in a mid-latitude mesotidal estuarine system (Tagus Estuary, Portugal). Geosciences. 2018; 8(12): 460. Available at: [[https://doi.org/10.3390/geosciences8120460 Download]] 

Ospino S, Restrepo JC, Otero L, Pierini J, Alvarez-Silva O. Saltwater intrusion into a River with high fluvial discharge: a microtidal estuary of the Magdalena River, Colombia. Journal of Coastal Research. 2018; 34(6): 1273-1288. Available at: [[https://doi.org/10.2112/JCOASTRES-D-17-00144.1 Link]] 

Ramos TB, Darouich H, Gonçalves MC, Brito D, Castelo Branco MA, Martins JC, Fernandes ML, Pires FP, Morais M, Neves R. An integrated analysis of the eutrophication process in the Enxoé Reservoir within the DPSIR framework. Water. 2018; 10(11):1576. Available at: [[https://doi.org/10.3390/w10111576 Download]]

Ramos TB, Simionesei L, Oliveira AR, Darouich H, Neves R. Assessing the impact of LAI data assimilation on simulations of the soil water balance and maize development using MOHID-Land. Water. 2018; 10(10): 1367. Available at: [[https://doi.org/10.3390/w10101367 Download]]

Sampaio AFP, Ribeiro RB, Ruiz MS, Giordano F. Disseminação de informações ambientais para stakeholders através da implantação de sistema de base dados e modelos numéricos de alta resolução na Bacia Hidrográfica do Estuário de Santos-São Vicente. Unisanta BioScience. 2018; 7(5):68-79. Available at: [[https://periodicos.unisanta.br/index.php/bio/article/view/1222 Download]] (In Portuguese).

Simionesei L, Ramos TB, Oliveira AR, Jongen M, Darouich H, Weber K, Proença V, Domingos T, Neves R. Modeling soil water dynamics and pasture growth in the montado ecosystem using MOHID Land. Water. 2018; 10(4): 489. Available at: [[https://doi.org/10.3390/w10040489 Download]]

Tavares LP, Lugon Jr J, da Silva JA, Wasserman JC, Rodrigues PP. Water management and urban flood mitigation: studies and proposals for the Macaé River basin in Brazil. Journal of Urban and Environmental Engineering. 2018; 12(2): 188-200. Available at: [[http://www.periodicos.ufpb.br/index.php/juee/article/view/41313 Download]]

Vaz N, Rodrigues JG, Mateus M, Franz G, Campuzano F, Neves R, Dias JM. Subtidal variability of the Tagus river plume in winter 2013. Science of the Total Environment. 2018; 627: 1353–1362. Available at: [[https://doi.org/10.1016/j.scitotenv.2018.01.325 Link]]

Yong-Wook N, Yong-Hyuk K. Prediction of drifter trajectory using evolutionary computation. Discrete Dynamics in Nature and Society. 2018; Article ID 6848745: 15 pages. Available at: [[https://doi.org/10.1155/2018/6848745 Link]]

===2017===

Alonso R, Jackson M, Santoro P, Fossati M, Solari S, Teixeira L. Wave and tidal energy resource assessment in Uruguayan shelf seas. Renewable Energy. 2017; 114 (Part A): 18-31. Available at: [[https://doi.org/10.1016/j.renene.2017.03.074 Link]]

Antiguedad I, Zabaleta A, Martinez-Santos M, Ruiz E, Uriarte J, Morales T, Comin FA, Carranza F, Español C, Navarro E, Bodoque JM, Ladera J, Brito D, Neves R, Bernard-Jannin L, Sun X, Teissier S, Sauvage S, Sanchez-Perez JM. A simple multi-criteria approach to delimitate nitrate attenuation zones in alluvial floodplains. Four cases in south-western Europe, Ecological Engineering. 2017; 103(B): 315-331. Available at: [[https://doi.org/10.1016/j.ecoleng.2016.09.007 Link]]

Bodoque JM, Ladera J, Yela JL, Alonso-Azcárate J, Brito D, Antigüedad I, Duran R, Attard E, Lauga B, Sánchez-Pérez JM. Recovering hydromorphological functionality to improve natural purification capacity of a highly human-modified wetland. Ecological Engineering. 2017; 103(B): 332-343. Available at: [[http://dx.doi.org/10.1016/j.ecoleng.2016.02.013 Link]].

Brito D, Neves R, Branco MA, Gonçalves MC, Ramos TB. Modeling ﬂood dynamics in a temporary river draining to an eutrophic reservoir in southeast Portugal. Environ Earth Sciences. 2017; 76:377. Available at: [[https://dx.doi.org/10.1007/s12665-017-6713-7 Link]].

Carvajalino-Fernandez MA, Lojek O, Fernandes L, Vivas-Aguas LJ. Desarrollo preliminar de un modelo hidrodinámico y de transporte de nutrientes para la ciénaga grande de Santa Marta. Boletín de Investigaciones Marinas y Costeras - INVEMAR. 2017; 46(1): 191-198. Available at: [[http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0122-97612017000100191&lng=en&nrm=iso Link]]. (In Spanish) 

Campos LF, Paiva PM, Rodrigues PPGW, Ferreira MIP, Lugon Jr J. Disposal of waste from cementing operation offshore oil and gas wells building. Ciência e Natura. 2017; 39(2): 413-422. Available at: [[https://doi.org/10.5902/2179460X25821 Download]] (In Portuguese).

Comin FA, Sánchez-Pérez JM, Español C, Carranza F, Sauvage S, Antiguedad I, Zabaleta A, Martinez-Santos M, Gerino M, Yao JM, Bodoque JM, Ladera J, Yela JL, Teissier S, Bernard-Jannin J, Sun X, Navarro E, Pinelli E, Chamsi O, Neves R, Brito D, Ruiz E, Uriarte J, Jiménez JJ, García M, Barcos A, Sorando R. Floodplain capacity to depollute water in relation to the structure of biological communities. Ecological Engineering. 2017; 103(Part B): 301-314. Available at: [[https://doi.org/10.1016/j.ecoleng.2016.06.007 Link]]

Franz G, Leitão P, Pinto L, Jauch E, Fernandes L, Neves R. Development and validation of a morphological model for multiple sediment classes. International Journal of Sediment Research. 2017. Available at: [[http://dx.doi.org/10.1016/j.ijsrc.2017.05.002 Link]].

Franz G, Delpey M, Brito D, Pinto L, Leitão P, Neves R. Modelling of sediment transport and morphological evolution under the combined action of waves and currents. Ocean Science Discussions. 2017; 3:1-26. Available at: [[http://www.ocean-sci-discuss.net/os-2017-8/ Link]]. 

Garneau C, Sauvage S, Sánchez-Pérez J-M, Lofts S, Brito D, Neves R, Probst A. Modelling trace metal transfer in large rivers under dynamic hydrology: A coupled hydrodynamic and chemical equilibrium model. Environmental Modelling & Software. 2017; 89: 77-96. Available at: [[http://dx.doi.org/10.1016/j.envsoft.2016.11.018 Link]].

Gaspar R, Marques L, Pinto L, Baeta A, Pereira L, Martins I, Marques JC, Neto JM. Origin here, impact there — The need of integrated management for river basins and coastal areas. Ecological Indicators. 2017; 72: 794-802. Available at: [[http://dx.doi.org/10.1016/j.ecolind.2016.09.013 Link]].

Guedes Viana CC, Serrão Lanzillotti R. Regressão linear simples na validação de modelos numéricos hidrodinâmicos. Boletim Do Observatório Ambiental Alberto Ribeiro Lamego. (2017); 11(1): 183-198. Available at: [[https://doi.org/10.19180/2177-4560.v11n12017p183-198 Download]] (In Portuguese).

Janeiro J, Neves A, Martins F, Relvas P. Integrating technologies for oil spill response in the SW Iberian coast. Journal of Marine Systems. 2017; 173: 31-42. Available at: [[https://doi.org/10.1016/j.jmarsys.2017.04.005 Link]].

Lee C-J, Kim G-D, Kim Y-H. Performance comparison of machine learning based on neural networks and statistical methods for prediction of drifter movement. Journal of the Korea Convergence Society. 2017; 8(10):45-52. Available at: [[https://doi.org/10.15207/JKCS.2017.8.10.045 Download]] (In Korean).

Li Y, Martins F, Wolanski E. Sensitivity analysis of the physical dynamics of the Fly River plume in Torres Strait, Estuarine, Coastal and Shelf Science. 2017; 194: 84-91. Available at: [[https://doi.org/10.1016/j.ecss.2017.06.006 Link]].

Lillebø AI, Stålnacke P, Gooch GD, Krysanova V, Bielecka M. Pan-European management of coastal lagoons: a Science-Policy-Stakeholder interface perspective. Estuarine, Coastal and Shelf Science. 2017; 198(B): 648-656. Available at: [[http://dx.doi.org/10.1016/j.ecss.2016.03.008 Link]].

Montanhini Neto R, Nocko HR, Ostrensky A. Carrying capacity and potential environmental impact of fish farming in the cascade reservoirs of the Paranapanema River, Brazil. Aquaculture Research. 2017; 48: 3433–3449. Available at: [[http://dx.doi.org/10.1111/are.13169 Link]].

Muttin F, Campbell R, Ouansafi A, Benelmostafa Y. Numerical modelling and full-scale exercise of oil-spill containment boom on Galician coast. International Journal of Computational Methods and Experimental Measurements. 2017; 5(5): 760-770. Available at: [[https://www.witpress.com/elibrary/CMEM-volumes/5/5/1724 Download]].

Paiva PM, Lugon Junior J, Barreto AN, Silva JAF, Silva Neto AJ. Comparing 3d and 2d computational modeling of an oil well blowout using MOHID platform - A case study in the Campos Basin. Science of The Total Environment. 2017; 595: 633-641. Available at: [[https://doi.org/10.1016/j.scitotenv.2017.04.007 Link]].

Ramos TB, Simionesei L, Jauch E, Almeida C, Neves R. Modelling soil water and maize growth dynamics influenced by shallow groundwater conditions in the Sorraia Valley region, Portugal. Agricultural Water Management. 2017; 185: 27-42. Available at: [[http://dx.doi.org/10.1016/j.agwat.2017.02.007 Link]].

Restrepo JC, Escobar J, Otero L, Franco D, Pierini J, Correa I. Factors Influencing the Distribution and Characteristics of Surface Sediment in the Bay of Cartagena, Colombia. Journal of Coastal Research. 2017; 33(1): 135–148. Available at: [[http://dx.doi.org/10.2112/JCOASTRES-D-15-00185.1 Link]].

Saraiva S, Fernandes L, van der Meer J, Neves R, Kooijman SALM. The role of bivalves in the Balgzand: First steps on an integrated modelling approach. Ecological Modelling. 2017; 359(34-48). Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2017.04.018. Link]].

Tavares LPS, Costa JB, Kalas F de A, Lugon Jr J. Modelagem hidrológica da bacia hidrográfica do Rio Macaé utilizando o MOHID Land. Boletim Do Observatório Ambiental Alberto Ribeiro Lamego. 2017; 11(1): 169-181. Available at: [[https://doi.org/10.19180/2177-4560.v11n12017p169-181 Download]].
 
Telles WR, Rodrigues PPGW, Silva Neto AJ. Calibração automática da plataforma MOHID empregando um método estocástico de otimização e dados reais de um evento climático extremo em Nova Friburgo‐RJ: parte 1 – preparação do modelo digital do terreno e aquisição dos dados experimentais de precipitação e nível. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería. 2017; 33(3-4): 164–170. Available at: [[http://dx.doi.org/10.1016/j.rimni.2016.04.006 Link]].

Telles WR, Rodrigues PPGW, Silva Neto AJ. Calibração automática da plataforma MOHID empregando um método estocástico de otimização e dados reais de um evento climático extremo em Nova Friburgo‐RJ: parte 2 – análise de sensibilidade e estimativa de parâmetros hidrológicos. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería. 2017; 33(3-4): 204–211. Available at: [[http://dx.doi.org/10.1016/j.rimni.2016.04.005 Link]].

Vargas CIC, Vaz N, Dias JM. An evaluation of climate change effects in estuarine salinity patterns: Application to Ria de Aveiro shallow water system. Estuarine, Coastal and Shelf Science. 2017; 189: 33-45. Available at: [[http://dx.doi.org/10.1016/j.ecss.2017.03.001 Link]].

===2016===

Bastos L, Bio A, Iglesias I. The Importance of Marine Observatories and of RAIA in Particular. Frontiers in Marine Science. 2016; 3: 140. Available at: [[http://dx.doi.org/10.3389/fmars.2016.00140 Download]].
		
Bernard-Jannin L, Brito D, Sun X, Jauch E, Neves R, Sauvage S, Sánchez-Pérez JM. Spatially distributed modelling of surface water-groundwater exchanges during overbank flood events – a case study at the Garonne River. Advances in Water Resources. 2016; 94: 146-159. Available at: [[http://dx.doi.org/10.1016/j.advwatres.2016.05.008 Link]].

Campuzano F, Brito D, Juliano M, Fernandes R, de Pablo H, Neves R. Coupling watersheds, estuaries and regional ocean through numerical modelling for Western Iberia: a novel methodology. Ocean Dynamics. 2016; 66(12): 1745–1756. Available at: [[http://dx.doi.org/10.1007/s10236-016-1005-4 Link]].

Chacaltana J, Jesus L, Barreto F, Innocentini V. Tide assessment for the continental shelf situated in the southwestern Atlantic between the latitudes 19.8ºS and 21.2ºS. Brazilian Journal of Oceanography. 2016; 64(2): 113-126. Available at: [[http://dx.doi.org/10.1590/S1679-87592016097906402 Download]].

Epelde AM, Antiguedad I, Brito D, Jauch E, Neves R, Garneau C, Sauvage S, Sánchez-Pérez JM. Different modelling approaches to evaluate nitrogen transport and turnover at the watershed scale. Journal of Hydrology. 2016; 539: 478-494. Available at: [[http://dx.doi.org/10.1016/j.jhydrol.2016.05.066 Link]].

Fernandes R, Braunschweig F, Lourenço F, Neves R. Combining operational models and data into a dynamic vessel risk assessment tool for coastal regions. Ocean Science. 2016; 12: 285-317. Available at: [[http://dx.doi.org/10.5194/os-12-285-2016 Link]].

Franz GAS, Leitão P, Santos A, Juliano M, Neves R. From regional to local scale modelling on the south-eastern Brazilian shelf: case study of Paranaguá estuarine system. Brazilian Journal of Oceanography. 2016; 64(3): 277-294. Available at: [[http://dx.doi.org/10.1590/S1679-875920161195806403 Download]].

Galesic M, Andricevic R, Gotovac H, Srzic V. Concentration statistics of solute transport for the near field zone of an estuary. Advances in Water Resources. 2016; 94: 424-440. Available at: [[http://dx.doi.org/10.1016/j.advwatres.2016.06.009 Link]]. 

Lozoya JP, Teixeira de Mello F, Carrizo D, Weinstein F, Olivera Y, Cedrés F, Pereira M, Fossati M. Plastics and microplastics on recreational beaches in Punta del Este (Uruguay): Unseen critical residents?  Environmental Pollution. 2016; 218: 931-941. Available at: [[http://dx.doi.org/10.1016/j.envpol.2016.08.041 Link]].

Lugon Jr J, Costa VTR, Rodrigues PPGW. Assessment of the impact of a small hydroelectric power plant over the water quality of the Itabapoana River through a computational model. Ciência e Natura. 2016; 38(1): 95-105. Available at: [[http://cascavel.ufsm.br/revistas/ojs-2.2.2/index.php/cienciaenatura/article/view/18274 Download]]. (In Portuguese)

Mendes R, Sousa MC, deCastro M, Gómez-Gesteira M, Dias JM. New insights into the Western Iberian Buoyant Plume: Interaction between the Douro and Minho River plumes under winter conditions. Progress in Oceanography. 2016; 141: 30-43. Available at: [[http://dx.doi.org/10.1016/j.pocean.2015.11.006 Link]].

Mukherjee, S. Influence of Discharge of River Daya in Chilika Lagoon: A Brief Study Using Mohid Simulation Model. Suresh Gyan Vihar University International Journal of Engineering and Technology, 2016; 2(2): 10-21. Available at: [[https://www.gyanvihar.org/journals/index.php/2018/12/03/influence-of-discharge-of-river-daya-in-chilika-lagoon-a-brief-study-using-mohid-simulation-model/ Download]].

Pinto L, Mateus M, Silva A. Modeling the transport pathways of harmful algal blooms in the Iberian coast. Harmful Algae. 2016; 53: 8-16. Available at: [[http://dx.doi.org/10.1016/j.hal.2015.12.001 Link]].

Rodrigues PHS, Maiorino JR. Case study: oil spill using MOHID software in São Sebastião – São Paulo. Brazilian Journal of Petroleum and Gas. 2016; 10(4): 247-261. Available at: [[http://dx.doi.org/10.5419/bjpg2016-0020 Link]]. 

Salamena GG, Martins F, Ridd PV. The density-driven circulation of the coastal hypersaline system of the Great Barrier Reef, Australia. Marine Pollution Bulletin. 2016; 105(1): 277–285. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2016.02.015 Link]].

Segurado P, Branco P, Jauch E, Neves R, Ferreira MT. Sensitivity of river fishes to climate change: The role of hydrological stressors on habitat range shifts. Science of The Total Environment. 2016; 562: 435-445. Available at: [[http://www.sciencedirect.com/science/article/pii/S0048969716306210 Link]].

Silva A, Pinto L, Rodrigues SM, de Pablo H, Santos M, Moita T, Mateus M. A HAB warning system for shellfish harvesting in Portugal. Harmful Algae. 2016; 53: 33-39. Available at: [[http://dx.doi.org/10.1016/j.hal.2015.11.017 Link]]. 

Simionesei L, Ramos TB, Brito D, Jauch E, Chambel-Leitão P, Almeida C, Neves R. Numerical simulation of soil water dynamics under stationary sprinkler irrigation with Mohid‐Land. Irrigation and Drainage. 2016; 65(1): 98-111. Available at: [[http://dx.doi.org/10.1002/ird.1944 Download]].

Vaz L, Mateus M, Serôdio J, Dias JM, Vaz N. Primary production of the benthic microalgae in the bottom sediments of Ria de Aveiro lagoon. Journal of Coastal Research. 2016; 75: 178–182. Available at: [[http://dx.doi.org/10.2112/SI75-36.1 Link]].

===2015===

Ascione Kenov I, Muttin F, Campbell R, Fernandes R, Campuzano F, Machado F, Franz G, Neves R. Water fluxes and renewal rates at Pertuis d'Antioche/Marennes-Oléron Bay, France. Estuarine, Coastal and Shelf Science. 2015; 167, Part A: 32–44. Available at: [[http://dx.doi.org/10.1016/j.ecss.2015.05.031 Link]].

Brandimarte L, Popescu I, Neamaha NK. Analysis of fresh-saline water interface at the Shatt Al-Arab estuary. International Journal of River Basin Management. 2015; 13(1): 17-25. Available at: [[http://dx.doi.org/10.1080/15715124.2014.945092 Link]].

Brito D, Campuzano FJ, Sobrinho J, Fernandes R, Neves R. Integrating operational watershed and coastal models for the Iberian Coast: Watershed model implementation – A first approach. Estuarine, Coastal and Shelf Science. 2015; 167, Part A: 138-146. Available at: [[http://dx.doi.org/10.1016/j.ecss.2015.10.022 Link]].

Campuzano FJ, Gutiérrez JM, Senabre T, Mateus MD, Perán A, Belmonte A, Aliaga V, Neves R. A modelling approach to estimate the environmental and productive carrying capacity for a Mediterranean coastal marine culture park. Journal of Aquaculture Research & Development. 2015; 6: 373. Available at: [[http://dx.doi.org/10.4172/2155-9546.1000373 Download]].

Chambel-Leitão P, Ramos TB, Domingos T, Neves R. Mohid Land - Porous media, a tool for modeling soil hydrology at plot scale and watershed scale. The Open Hydrology Journal. 2015; 9: 1-12. Available at: [[http://dx.doi.org/10.2174/1874378101509010001 Link]].

Choi J, Jun K, Choi Y, Cho K, Kwon J-I, Park J, Park K. High-resolution circulation forecasting of the Maenggol Channel, south coast of Korea. Acta Oceanologica Sinica. 2015; 34(12): 11-18. Available at: [[http://dx.doi.org/10.1007/s13131-015-0774-9 Link]].

Cherif I, Alexandridis TK, Jauch E, Chambel-Leitao P, Almeida C. Improving remotely sensed actual evapotranspiration estimation with raster meteorological data. International Journal of Remote Sensing. 2015; 36(18): 4606-4620. Available at: [[http://dx.doi.org/10.1080/01431161.2015.1084439 Link]].

Critchell K, Grech A, Schlaefer J, Andutta FP, Lambrechts J, Wolanski E, Hamann M. Modelling the fate of marine debris along a complex shoreline: Lessons from the Great Barrier Reef, Estuarine, Coastal and Shelf Science. 2015; 167(B): 414–426. Available at: [[http://dx.doi.org/10.1016/j.ecss.2015.10.018 Link]].

Gomes N, Neves R, Ascione-Kenov I, Campuzano FJ, Pinto L. Tide and tidal currents in the Cape Verde archipelago. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2015; 15(3): 395-408. Available at: [[http://www.aprh.pt/rgci/rgci483.html Download]].

Mateus MD, Franz G. Sensitivity Analysis in a Complex Marine Ecological Model. Water. 2015; 7(5): 2060-2081. Available at: [[http://www.mdpi.com/2073-4441/7/5/2060 Link]].

Niraj PS, Balaji R, Vethamony P. Pre-monsoon hydrodynamic modeling of Goa coast, West coast of India. ISH Journal of Hydraulic Engineering. 2015; Available at: [[http://dx.doi.org/10.1080/09715010.2015.1017747 Link]].

Oliveira AP, Mateus MD, Cabeçadas G, Neves R. Water-air CO<sub>2</sub> fluxes in the Tagus estuary plume (Portugal) during two distinct winter episodes. Carbon Balance and Management. 2015; 10:2. Available at: [[http://dx.doi.org/10.1186/s13021-014-0012-3 Link]].

Park K-S, Heo K-Y, Jun K, Kwon J-I, Kim J, Choi J-Y, Cho K-H, Choi B-J, Seo S-N, Kim Y, Kim S-D, Yang C-S, Lee J-C, Kim S-I, Kim S, Choi J-W, Jeong S-H. Development of the Operational Oceanographic System of Korea. Ocean Science Journal. 2015; 50(2): 353-369. Available at: [[http://dx.doi.org/10.1007/s12601-015-0033-1 Link]].

Piroddi C, Teixeira H, Lynam CP, Smith C, Alvarez MC, Mazik K, Andonegi E, Churilova T, Tedesco L, Chifflet M, Chust G, Galparsoro I, Garcia AC, Kämäri M, Kryvenko O, Lassalle G, Neville S, Niquil N, Papadopoulou N, Rossberg AG, Suslin V, Uyarra MC. Using ecological models to assess ecosystem status in support of the European Marine Strategy Framework Directive. Ecological Indicators. 2015; 58: 175-191. Available at: [[http://dx.doi.org/10.1016/j.ecolind.2015.05.037 Link]].

Póvoa P, A Nobre, P Leitão, P Galvão, H Santos, A Frazão, R Neves, JS Matos. Operational decision support system for large combined sewage systems: Lisbon / Tagus Estuary case study Reference. Water Science and Technology. 2015; 72(8): 1421-1427. Available at: [[http://wst.iwaponline.com/content/72/8/1421 Link]]

Salgueiro DV, de Pablo H, Neves R, Mateus M. Modelling the thermal effluent of a near coast power plant (Sines, Portugal). Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Zone Management. 2015; 15(4). Available at: [[http://dx.doi.org/10.5894/rgci577 Download]].

Seiler LMN, Fernandes EHL, Martins F, Abreu PC. Evaluation of hydrologic influence on water quality variation in a coastal lagoon through numerical modeling. Ecological Modelling. 2015; 314: 44-61. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2015.07.021 Link]].

Vaz N, Mateus M, Plecha S, Sousa MC, Leitão PC, Neves R, Dias JM. Modeling SST and chlorophyll patterns in a coupled estuary-coastal system of Portugal: The Tagus case study, Journal of Marine Systems. 2015; 147: 123–137. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2014.05.022 Link]]

===2014===

Campuzano FJ, Pierini JO, Leitão PC, Gómez EA, Neves RJ. Characterization of the Bahia Blanca estuary by data analysis and numerical modelling. Journal of Marine Systems. 2014; 129: 415-424. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2013.09.001 Link]].

Cho K-H, Li Y, Wang H, Park K-S, Choi J-Y, Shin K-I, Kwon J-I. Development and validation of an operational search and rescue modeling system for the Yellow Sea and the East and South China Seas. Journal of Atmospheric and Oceanic Technology. 2014; 31: 197–215. Available at: [[http://dx.doi.org/10.1175/JTECH-D-13-00097.1 Download]].

Delpey MT, Ardhuin F, Otheguy P, Jouon A. Effects of waves on coastal water dispersion in a small estuarine bay. Journal of Geophysical Research: Oceans. 2014; 119: 1–17. Available at: [[http://onlinelibrary.wiley.com/doi/10.1002/2013JC009466/abstract Link]].

Díaz LO, Pierini JO, Leitao PC, Malhadas M, Ribeiro J, Leitao JC,  Restrepo J. Three-dimensional oil spill transport and dispersion at sea by an event of blowout. DYNA. August 2014; 81 (186): 42-50. Available at: [[http://dyna.unalmed.edu.co/es/ediciones/186/articulos/v81n186a05/v81n186a05.pdf Download]].

Duarte B, Valentim JM, Dias JM, Marques JC, Silva H, Caçador I. Modelling sea level rise (SLR) impacts on salt marsh detrital outwelling C and N exports from an estuarine coastal lagoon to the ocean (Ria de Aveiro, Portugal). Ecological Modelling. 2014; 289: 36–44. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2014.06.020 Link]].

Fossati M, Santoro P, Mosquera R, Martínez C, Ghiardo F, Ezzatti P, Pedocchi F, Piedra-Cueva I. Dinámica de flujo, del campo salino y de los sedimentos finos en el Río de la Plata. RIBAGUA - Revista Iberoamericana del Agua. 2014; 1(1): 48-63. Available at: [[http://dx.doi.org/10.1016/S2386-3781(15)30007-4 Download]] (In Spanish).

Franz G, Pinto L, Ascione I, Mateus M, Fernandes R, Leitão P, Neves R. Modelling of cohesive sediment dynamics in tidal estuarine systems: Case study of Tagus estuary, Portugal. Estuarine, Coastal and Shelf Science. 2014; 151: 34–44. Available at: [[http://dx.doi.org/10.1016/j.ecss.2014.09.017 Link]].

Janeiro J, Zacharioudaki A, Sarhadi E, Neves A, Martins F. Enhancing the management response to oil spills in the Tuscany Archipelago through operational modelling. Marine Pollution Bulletin. 2014; 85(2): 574-589. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2014.03.021 Link]].

Malhadas MS, Mateus MD, Brito D, Neves R. Trophic state evaluation after urban loads diversion in a eutrophic coastal lagoon (Óbidos Lagoon, Portugal): a modeling approach. Hydrobiologia. 2014; 740(1): 231-251. Available at: [[http://dx.doi.org/10.1007/s10750-014-1956-8 Link]].

Mateus M, Pinto L, Chambel-Leitão P. Evaluating the predictive skills of ocean circulation models in tracking the drift of a human body: a case study. Australian Journal of Forensic Sciences. 2014; 0: 1–10. Available at: [[http://dx.doi.org/10.1080/00450618.2014.957346 Link]].

Otero-Diaz L, Pierini JO, Chambel-Leitao P, Malhadas M, Ribeiro J, Chambel-Leitao J, Restrepo J. Transporte y dispersión tridimensional de un derrame de petróleo en el mar debido a un evento "blowout". DYNA. 2014; 81(186): 42-50. Available at: [[https://revistas.unal.edu.co/index.php/dyna/article/view/37951/pdf_v81n186a05 Download]] (In Spanish).

Santos L, Vaz L, Gomes NCM, Vaz N, Dias JM, Cunha Â, Almeida A. Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro. Estuarine, Coastal and Shelf Science. 2014; 138: 107–120. Available at: [[http://dx.doi.org/10.1016/j.ecss.2013.12.021 Link]].

Sousa MC, Mendes R, Alvarez I, Vaz N, Gomez-Gesteira M, Dias JM. Unusual circulation patterns of the Rias Baixas induced by Minho freshwater intrusion (NW of the Iberian Peninsula). PLoS ONE. 2014; 9(11):e112587. Available at: [[https://doi.org/10.1371/journal.pone.0112587 Download]].

Sousa MC, Vaz N, Alvarez I, Gomez-Gesteira M, Dias JM. Modeling the Minho River plume intrusion into the Rias Baixas (NW Iberian Peninsula). Continental Shelf Research. 2014; 85: 30-41. Available at: [[http://dx.doi.org/10.1016/j.csr.2014.06.004 Link]].

Sousa MC, Vaz N, Alvarez I, Gomez-Gesteira M, Dias JM. Influence of the Minho River plume on the Rias Baixas (NW of the Iberian Peninsula). Journal of Marine Systems. 2014; 139: 248–260. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2014.06.012 Link]].

Souza M, Schettini C. Assessment of tide and wind effects on the hydrodynamics and interactions between Tijucas Bay and the adjacent continental shelf, Santa Catarina, Brazil. Brazilian Journal of Geophysics. 2014; 32(3): 515-529. Available at: [[http://dx.doi.org/10.22564/rbgf.v32i3.506 Download]].

Tironi A, Marin VH, Delgado LE. Un modelo hidrodinámico 3D del humedal del Rio Cruces: cálculo del tiempo de residencia utilizando MOHID. Revista Aqua-LAC. 2014; 6(2): 50-57. Available at: [[http://www.unesco.org.uy/phi/aqualac/fileadmin/phi/aqualac/Numero_6_vol_2/05_Un_modelo_hidrodinamico_3D_del_humedal_de_rio_cruces.pdf Download]] (In Spanish).

Valle M, Chust G, Campo A, Wisz MS, Olsen SM, Garmendia JM, Borja A. Projecting future distribution of the seagrass ''Zostera noltii'' under global warming and sea level rise. Biological Conservation. 2014; 170: 74–85. Available at: [[http://www.sciencedirect.com/science/article/pii/S0006320713004382 Link]].

Vaz N, Dias JM. Residual currents and transport pathways in the Tagus estuary, Portugal : the role of freshwater discharge and wind. Journal of Coastal Research. 2014; 70: 610–616. Available at: [[https://doi.org/10.2112/SI70-103.1 Link]].

===2013===

Ascione Kenov I, Deus R, Alves CN, Neves, R. Modelling seagrass biomass and relative nutrient content. Journal of Coastal Research. 2013; 29(6): 1470–1476. Available at: [[http://dx.doi.org/10.2112/JCOASTRES-D-13-00047.1 Link]].

Ballent A, Pando S, Purser A, Juliano MF, Thomsen L. Modelled transport of benthic marine microplastic pollution in the Nazaré Canyon. Biogeosciences. 2013; 10: 7957-7970. Available at: [[http://dx.doi.org/10.5194/bg-10-7957-2013 Link]].

Campuzano FJ, Mateus MD, Leitão PC, Leitão PC, Marín VH, Delgado LE, Tironi A, Pierini JO, Sampaio AFP, Almeida P, Neves RJ. Integrated coastal zone management in South America: A look at three contrasting systems. Ocean & Coastal Management. 2013; 72: 22-35. Available at: [[http://dx.doi.org/10.1016/j.ocecoaman.2011.08.002 Link]].

Cerralbo P, Grifoll M, Espino M, López J. Predictability of currents on a mesotidal estuary (Ria de Vigo, NW Iberia). Ocean Dynamics. 2013; 63(2-3): 131-141. Available at: [[http://dx.doi.org/10.1007/s10236-012-0586-9 Link]].

Cho K-H, Choi J-Y, Jeong S-H, Choi J-W, Kwon J-I, Park K-S. Development of a skill assessment tool for the Korea operational oceanographic system. Acta Oceanologica Sinica. 2013; 32(9): 74-81.  Available at: [[http://dx.doi.org/10.1007/s13131-013-0354-9 Link]].

Choi J-Y, Park J-Y, Cho K-H, Hyun S-K, Yoo J, Lee D-Y, Jun K-C. Field observation and modeling of wave set-up on a macrotidal beach: the Malipo Experiment. Journal of Coastal Research. 2013; Special Issue No. 65. Available at:[[http://ics2013.org/papers/Paper4246_rev.pdf Download]]. 

Deus R, Brito D, Kenov IA, Lima M, Costa V, Medeiros A, Neves R, Alves CN. Three-dimensional model for analysis of spatial and temporal patterns of phytoplankton in Tucuruí reservoir, Pará, Brazil. Ecological Modelling. 2013; 253: 28-43. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2012.10.013 Link]].

Fossati M, Piedra-Cueva I. A 3D hydrodynamic numerical model of the Río de la Plata and Montevideo’s coastal zone. Applied Mathematical Modelling. 2013; 37(3):1310-1332. Available at: [[http://dx.doi.org/10.1016/j.apm.2012.04.010 Link]].

Gobbetti LEC. Design of the filling and emptying system of the new Panama Canal locks. Journal of Applied Water Engineering and Research. 2013; 1(1): 28-38. Available at: [[http://dx.doi.org/10.1080/23249676.2013.827899 Link]].

Henry L-A, Moreno Navas J, Roberts JM. Multi-scale interactions between local hydrography, seabed topography, and community assembly on cold-water coral reefs. Biogeosciences. 2013; 10: 2737-2746. Available at: [[http://dx.doi.org/10.5194/bg-10-2737-2013 Link]].

Marín VH, Tironi A, Paredes MA, Contreras M. Modeling suspended solids in a Northern Chilean Patagonia glacier-fed fjord: GLOF scenarios under climate change conditions. Ecological Modelling. 2013; 130:138-151. Available at: [[http://dx.doi.org/10.1016/j.ecolmodel.2012.06.017 Link]].

Pando S, Juliano MF, García R, de Jesus Mendes PA, Thomsen L. Application of a lagrangian transport model to organo-mineral aggregates within the Nazaré canyon. Biogeosciences. 2013; 10: 4103-4115. Available at: [[http://dx.doi.org/10.5194/bg-10-4103-2013 Link]].

Pierini JO, Lovallo M, Telesca L, Gómez EA. Investigating prediction performance of an artificial neural network and a numerical model of the tidal signal at Puerto Belgrano, Bahia Blanca Estuary (Argentina). Acta Geophysica. 2013; 61(6): 1522-1537. Available at: [[http://dx.doi.org/10.2478/s11600-012-0093-x Link]]. 

Rueda JG, Otero LJ, Pierini JO. Hydrodynamic characterization in a tropical estuary of South America with mixed microtidal regime (Cartagena Bay, Colombia). Boletín Científico CIOH. 2013; 31: 159-174. Available at: [[http://www.cioh.org.co/dev/publicaciones/acceso_dev.php?nbol=cioh_bcc3110.pdf Download]] (In Spanish).  

Santoro PE, Fossati M, Piedra-Cueva I. Study of the meteorological tide in the Río de la Plata. Continental Shelf Research. 2013; 60: 51-63. Available at: [[http://dx.doi.org/10.1016/j.csr.2013.04.018 Link]].

Saruwatari A, Ingram DM, Cradden L. Wave–current interaction effects on marine energy converters. Ocean Engineering. 2013; 73: 106-118. Available at: [[http://dx.doi.org/10.1016/j.oceaneng.2013.09.002 Link]].

Telles WR, Rodrigues PPGW, Neto AJS. Utilização de Sistemas de Informações Geográficas na delimitação de bacias hidrográficas. Boletim Do Observatório Ambiental Alberto Ribeiro Lamego. 2013; 7(1): 19-30. Available at: [[https://essentiaeditora.iff.edu.br/index.php/boletim/article/view/2177-4560.20130002 Download]] (In Portuguese).  

Toderascu R, Rusu E. Numerical simulations of the current field in the Black Sea basin. Analele Universitatii Maritime Constanta. 2013; 14(19): 177-184. Available at: [[http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=89546050 Link]].

Valentim JM, Vaz N, Silva H, Duarte B, Caçador I, Dias JM. Tagus Estuary and Ria de Aveiro salt marsh dynamics and the impact of sea level rise. Estuarine, Coastal and Shelf Science. 2013; 130:138-151. Available at: [[http://dx.doi.org/10.1016/j.ecss.2013.04.005 Link]].

===2012===

Arifin T, Y Y, Ismail MFA. Kondisi arus pasang surut di perairan pesisir kota Makassar, Sulawesi Selatan. Tidal currents condition in Makassar waters, South Sulawesi. Depik. 2012; 1(3): 183-188. Available at: [[http://jurnal.unsyiah.ac.id/depik/article/view/113/106 Link]] (In Indonesian).

Ascione Kenov I, Garcia AC, Neves R. Residence time of water in the Mondego Estuary (Portugal). Estuarine, Coastal and Shelf Science. 2012; 106: 13–22. Available at: [[http://dx.doi.org/10.1016/j.ecss.2012.04.008 Link]]. 

Huhn F, von Kameke A, Allen-Perkins S, Montero P, Venancio A, Pérez-Muñuzuri V. Horizontal Lagrangian transport in a tidal-driven estuary—Transport barriers attached to prominent coastal boundaries. Continental Shelf Research. 2012; 39–40:1–13. Available at: [[http://dx.doi.org/10.1016/j.csr.2012.03.005 Link]]. 

Janeiro J, Martins F, Relvas P. Towards the development of an operational tool for oil spills management in the Algarve coast. Journal of Coastal Conservation. 2012; 16(4): 449-460. Available at: [[http://dx.doi.org/10.1007/s11852-012-0201-8 Link]].

Leitão P, Galvão P, Aires E, Almeida L, Viegas C. Fecal contamination modeling in coastal waters using a web service approach. Environmental Engineering and Management. 2012; 11(5): 899-906. Available at: [[http://omicron.ch.tuiasi.ro/EEMJ/pdfs/vol11/no5/3_762_%20Leitao_11.pdf Download]].

Madeira D, Narciso L, Cabral HN, Vinagre C. Thermal tolerance and potential impacts of climate change on coastal and estuarine organisms, Journal of Sea Research. 2012; 70: 32-41. Available at: [[http://10.1016/j.seares.2012.03.002 Link]].

Mateus M. A process-oriented model of pelagic biogeochemistry for marine systems. Part I: Model description. Journal of Marine Systems. 2012; 94(Supplement): S78–S89. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2011.11.008 Link]].

Mateus M, Leitão PC, de Pablo H, Neves R. Is it relevant to explicitly parameterize chlorophyll synthesis in marine ecological models?. Journal of Marine Systems. 2012; 94(Supplement): S23–S33. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2011.11.007 Link]].

Mateus M, Riflet G, Chambel P, Fernandes L, Fernandes R, Juliano M, Campuzano F, de Pablo H, Neves R. An operational model for the West Iberian coast: products and services. Ocean Science. 2012; 8: 713-732. Available at: [[http://dx.doi.org/10.5194/os-8-713-2012 Link]]

Mateus M, Vaz N, Neves R. A process-oriented model of pelagic biogeochemistry for marine systems. Part II: Application to a mesotidal estuary. Journal of Marine Systems. 2012; 94(Supplement): S90–S101. Available at: [[http://dx.doi.org/10.1016/j.jmarsys.2011.11.009 Link]].

Pierini JO, Streitenberger ME, Baldini MD. Evaluation of faecal contamination in Bahía Blanca estuary (Argentina) using a numerical model. Revista de biología marina y oceanografía. 2012; 47(2): 193-202. Available at: [[https://dx.doi.org/10.4067/S0718-19572012000200003 Download]].

Viegas C, Neves R, Fernandes R, Mateus M. Modelling tools to support an early alert system for bathing water quality. Environmental Engineering and Management Journal. 2012; 11(5): 907-918.  Available at: [[http://www.academia.edu/1788173/Modelling_tools_to_support_an_early_alert_system_for_bathing_water_quality Link]].

Silva P, Martins F, Boski T, Sampath R. Modeling basin infilling processes in estuaries using two different approaches: an aggregate diffusive type model and a processed based model. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2012; 12(2): 127-129. Available at: [[http://www.aprh.pt/rgci/pdf/rgci-272_Silva.pdf Download]].

===2011===
Gardi A, Valencia N, Guillande R, André C. Inventory of uncertainties associated with the process of tsunami damage assessment on buildings (SCHEMA FP6 EC co-funded project). Natural Hazards and Earth System Sciences. 2011; 11: 883–893. Available at: [[http://www.nat-hazards-earth-syst-sci.net/11/883/2011/nhess-11-883-2011.pdf Download]]

Hora HMC, Tavares JHS, Souza GL, Lugon Jr. J, Ferreira MIP. Modelagem computacional como ferramenta de gerenciamento dos recursos hídricos: uma alternativa para abordagem de problemas de usos múltiplos. Boletim Do Observatório Ambiental Alberto Ribeiro Lamego. 2011; 5(1), 71-87. Available at: [[https://essentiaeditora.iff.edu.br/index.php/boletim/article/view/2177-4560.20110004 Download]] (In Portuguese).

Navas JM, Telfer TC, Ross LG. Application of 3D hydrodynamic and particle tracking models for better environmental management of finfish culture. Continental Shelf Research. 2011; 31(6): 675-684. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0278434311000124 Link]].

Olsson O, Sorokin A, Ikramova M. Modelling scenarios to identify a combined sediment-water management strategy for the large reservoirs of the Tuyamuyun hydro-complex. Irrigation and Drainage Systems. 2011; 25(1):1-18. Available at: [[http://dx.doi.org/10.1007/s10795-011-9107-0 Link]].

Pessanha CMD, Lugon Jr J, Ferreira MIP, Souza PRN, da Hora HMC. Uso de modelagem computacional aplicada à gestão sanitário-ambiental: uma proposta de adaptação da plataforma MOHID Water para corpos lênticos aplicada à lagoa Imboacica, Macaé-RJ. Boletim Do Observatório Ambiental Alberto Ribeiro Lamego. 2011; 5(2), 45-70. Available at: [[https://essentiaeditora.iff.edu.br/index.php/boletim/article/view/2177-4560.20110015 Download]] (In Portuguese).

Ribeiro J, Silva A, Leitão P. High resolution tsunami modelling for the evaluation of potential risk areas in Setúbal (Portugal). Natural Hazards and Earth System Science. 2011; 11(8): 2371-2380. Available at: [[http://www.nat-hazards-earth-syst-sci.net/11/2371/2011/nhess-11-2371-2011.pdf Download]].

Santoro P, Fernández M, Fossati M, Cazes, G, Terra, R Piedra-Cueva, I. Pre-operational forecasting of sea level height for the Río de la Plata. Applied Mathematical Modelling. 2011; 35(5): 2462-2478. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0307904X10004750 Link]].

Vaz N, Mateus M, Dias JM. Semidiurnal and spring-neap variations in the Tagus Estuary: Application of a process-oriented hydro-biogeochemical model. Journal of Coastal Research. 2011; SI(64): 1619-1623. Available at: [[http://www.form.ics2011.pl/artic/SP64_1619-1623_N.Vaz.pdf Download]].

===2010===

Archetti G, Bernia S, Salvà-Catarineu M. Análisis de los vectores ambientales que afectan la calidad del medio en la bahía del Fangar mediante herramientas SIG”, GeoFocus. 2010; 10: 252-279. Available at: [[http://geofocus.rediris.es/2010/Articulo11_2010.pdf Download]] (In Spanish).

Barão L, Chambel-Leitão P, Braunschweig F, Neves RJ, Gonçalves MC, Ramos TB, Castanheira NL. Simulation of water dynamics in two irrigated soils. Revista de Ciências Agrárias. 2010; 33(1): 346-357. Available at: [[http://www.scielo.mec.pt/scielo.php?script=sci_arttext&pid=S0871-018X2010000100037&lng=en&nrm=i&tlng=en Download]]

Campuzano F, Nunes S, Malhadas M, Neves R. Modelling hydrodynamics and water quality of Madeira Island (Portugal). GLOBEC International Newsletter. 2010; 16(1): 40-42. Available at: [[http://www.mohid.com/PublicData/Products/Papers/Globec_campuzanofjetal.pdf Download]].

Malhadas MS, Neves RJ, Leitão PC, Silva A. Influence of tide and waves on water renewal in Óbidos Lagoon, Portugal. Ocean Dynamics. 2010; 60(1): 41-55. Available at: [[http://dx.doi.org/10.1007/s10236-009-0240-3 Link]].

Morais P, Martins F, Chícharo MA, Lopes J, Chícharo L. Merging anchovy eggs abundance into a hydrodynamic model as an assessment tool for estuarine ecohydrological management. River Research and Applications. 2010. Available at: [[http://dx.doi.org/10.1002/rra.1443 Link]]

Tironi A, Marin VH, Campuzano FJ. A management tool for assessing aquaculture environmental impacts in Chilean Patagonian Fjords: integrating hydrodynamic and pellets dispersion models. Environmental Management. 2010; 45(5): 953-62. Available at: [[http://dx.doi.org/10.1007/s00267-010-9467-5 Link]].

===2009===

Canas A, Santos A, Leitão P. Effect of large scale atmospheric pressure changes on water level in the Tagus Estuary. Journal of Coastal Research. 2009; SI(56): 1627-1631. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/1627.1631_A.Canas_ICS2009.pdf Download]].

Gabriel S, Martins F. First results of a long term morphodynamic process based model. Journal of Coastal Research. 2009; SI(56): 952-955. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/952.955_S.Gabriel_ICS2009.pdf Download]].

Malhadas MS, Leitão PC, Silva A, Neves R. Effect of coastal waves on sea level in Óbidos Lagoon, Portugal. Continental Shelf Research. 2009; 29(9): 1240-1250. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0278434309000739 Link]].

Malhadas MS, Silva A, Leitão PC, Neves R. Effect of the bathymetric changes on the hydrodynamic and residence time in Óbidos Lagoon (Portugal). Journal of Coastal Research. 2009; SI(56): 549-553. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_I/549.553_M.S.Malhadas_ICS2009.pdf Download]].

Martin F, Hedger RD, Dodson JJ, Fernandes L, Hatin D, Caron F, Whoriskey FG. Behavioural transition during the estuarine migration of wild Atlantic salmon (''Salmo salar'' L.) smolt. Ecology of Freshwater Fish. 2009; 18: 406–417. Available at: [[https://doi.org/10.1111/j.1600-0633.2009.00357.x Link]].

Trancoso AR, Braunschweig F, Chambel Leitão P, Obermann M, Neves R. An advanced modelling tool for simulating complex river systems. The Science of the total environment. 2009; 407(8): 3004-3016. Available at: [[http://dx.doi.org/10.1016/j.scitotenv.2009.01.015 Link]].

Tzoraki O, Nikolaidis NP, Trancoso R, Braunschweig F, Neves R. A reach-scale biogeochemical model for temporary rivers. Hydrological Processes. 2009; 23(2): 272-283. Available at: [[http://dx.doi.org/10.1002/hyp.7138 Link]].

Vaz N, Dias JM, Leitão PC. Three-dimensional modelling of a tidal channel: The Espinheiro Channel (Portugal). Continental Shelf Research. 2009; 29(1): 29-41. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0278434307003330 Link]].

Vaz N, Fernandes L, Leitão PC, Dias JM, Neves R. The Tagus estuarine plume induced by wind and river runoff: Winter 2007 case study. Journal of Coastal Research. 2009; SI(56): 1090-1094. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/1090.1094_N.Vaz_ICS2009.pdf Download]].

Viegas CN, Nunes S. Streams contribution on bathing water quality after rainfall events in Costa do Estoril - a tool to implement an alert system for bathing water quality. Journal of Coastal Research. 2009; SI(56): 1691-1695. Available at: [[http://e-geo.fcsh.unl.pt/ICS2009/_docs/ICS2009_Volume_II/1691.1695_C.Viegas_ICS2009.pdf Download]].

===2008===

Genio L, Sousa A, Vaz N, Dias J, Barroso C. Effect of low salinity on the survival of recently hatched veliger of Nassarius reticulatus (L.) in estuarine habitats: A case study of Ria de Aveiro. Journal of Sea Research. 2008; 59(3): 133-143. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S1385110107000986 Link]].

Janeiro J, Fernandes E, Martins F, Fernandes R. Wind and freshwater influence over hydrocarbon dispersal on Patos Lagoon, Brazil. Marine Pollution Bulletin. 2008; 56(4): 650-665. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2008.01.011 Link]].

Marín VH, Campuzano FJ. Un modelo hidrodinámico-barotrópico para los fiordos australes de Chile entre los 41° S y los 46° S. Ciencia y Tecnología del Mar. 2008; 31(2): 125-136. Available at: [[http://www.redalyc.org/articulo.oa?id=62412167007 Download]]. (In Spanish).

Mateus M, Neves R. Evaluating light and nutrient limitation in the Tagus estuary using a process-oriented ecological model. Journal of Marine Engineering and Technology. 2008; 12A: 43-54. Available at: [[http://www.ingentaconnect.com/content/imarest/jmet/2008/00002008/00000012/art00005 Link]]

Palomar P, Losada I. Desalinización de agua marina en España: Aspectos a considerar en el diseño del sistema de vertido para protección del medio marino. Revista de Obras Públicas. 2008; 3486: 37-52. Available at: [[http://www.ugr.es/~iagua/LICOM_archivos/Palomar&Losada2008.pdf Download]]. (In Spanish).

Riflet G, Juliano M, Fernandes L, Leitão PC, Neves R. Operational ocean forecasting of the portuguese waters. Mercator-Ocean Quarterly Newsletter. 2008; 30: 20–32. Available at: [[http://www.mohid.com/PublicData/products/Papers/MercatorOcean_lettre_30_en_2008_GR.pdf Download]]

===2007===

Saraiva S, Pina P, Martins F, Santos M, Braunschweig F, Neves R. Modelling the influence of nutrient loads on Portuguese estuaries. Hydrobiologia. 2007; 587(1): 5-18. Available at: [[https://doi.org/10.1007/s10750-007-0675-9 Link]].

Vaz N, Dias JM, Leitão PC, Nolasco R. Application of the Mohid-2D model to a mesotidal temperate coastal lagoon. Computers & Geosciences. 2007; 33(9): 1204-1209. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0098300407000763 Link]].

Vaz N, Leitão PC, Dias JM. Channel-ocean exchange driven by tides and river flow: Espinheiro Channel (Portugal). Water. 2007; SI(50): 1000-1004. Available at: [[http://www.griffith.edu.au/conference/ics2007/pdf/ICS182.pdf Download]].

===2006===

Carracedo P, Torres-López S, Barreiro M, Montero P, Balseiro CF, Penabad E, Leitao PC, Pérez-Muñuzuri V. Improvement of pollutant drift forecast system applied to the Prestige oil spills in Galicia Coast (NW of Spain): development of an operational system. Marine Pollution Bulletin. 2006; 53(5-7): 350-360. Available at: [[http://dx.doi.org/10.1016/j.marpolbul.2005.11.014 Link]].

Loureiro S, Newton A, Icely J. Boundary conditions for the European Water Framework Directive in the Ria Formosa lagoon, Portugal (physico-chemical and phytoplankton quality elements). Estuarine, Coastal and Shelf Science. 2006; 67: 382-398. Available at: [[http://dx.doi.org/10.1016/j.ecss.2005.11.029 Link]].

===2005===

Leitão P, Coelho H, Santos A, Neves R. Modelling the main features of the Algarve coastal circulation during July 2004: A downscaling approach. Journal of Atmospheric & Ocean Science. 2005; 10(4): 421-462. Available at: [[http://dx.doi.org/10.1080/17417530601127704 Link]].

Nobre A, Ferreira J, Newton A, Simas T, Icely J, Neves R. Management of coastal eutrophication: Integration of field data, ecosystem-scale simulations and screening models. Journal of Marine Systems. 2005; 56(3-4): 375-390. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0924796305000400 Link]].

Santos A, Nogueira J, Martins H. Survival of sardine larvae off the Atlantic Portuguese coast: a preliminary numerical study. ICES Journal of Marine Science. 2005; 62(4): 634-644. Available at: [[http://icesjms.oxfordjournals.org/cgi/doi/10.1016/j.icesjms.2005.02.007 Link]].

Trancoso AR, Saraiva S, Fernandes L, Pina P, Leitão P, Neves R. Modelling macroalgae using a 3D hydrodynamic-ecological model in a shallow, temperate estuary. Ecological Modelling. 2005; 187(2-3): 232-246. Available at: [[http://linkinghub.elsevier.com/retrieve/pii/S0304380005000918 Link]].

Vaz N, Dias JM, Leitão P, Martins I. Horizontal patterns of water temperature and salinity in an estuarine tidal channel: Ria de Aveiro. Ocean Dynamics. 2005; 55(5-6): 416-429. Available at: [[https://doi.org/10.1007/s10236-005-0015-4 Link]].

==Conference Proceedings==

Almeida C, Chambel-Leitão P, Jauch E, Neves R, Almas L. Serviço de apoio à produção agrícola com optimização dos usos de rega no Vale do Sorraia. Jornadas Técnicas da APRH A Engenharia dos Aproveitamentos Hidroagrícolas: actualidade e desafios futuros, 13–15 October 2011, Lisboa, Portugal. Available at: [[http://www.aprh.pt/jt-out-2011/pdf/48.pdf Download]]. (In Portuguese)

Almeida C, Chambel-Leitão P, Jauch E, Silva A, Timóteo G, Neves R. The use of catchment models coupled with weather forecasts to support water management in Mozambique Umbeluzi watershed. Transboundary water management across borders and interfaces: present and future challenges (TWAM2013), 16-20 March 2013, Aveiro, Portugal. Available at: [[http://ibtwm.web.ua.pt/congress/Proceedings/papers/Almeida_Carina.pdf Download]].

Almeida C, Jauch E, Segurado P, Ferreira T, Neves R. Integrating modelling approach to study the relations between stressors and indicators. EDA-EMERGE PhD student conference "merging pollutants and multiple stressors in aquatic ecosystems", 29 June-01 July 2015, Leipzig, Germany. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Almeida_et_al_2015_Poster.pdf Download Poster]].

Almeida C, Sobrinho J, Jauch E, Neves R. Integrated modeling approach to study the impact of reservoirs in the watershed: the case study of the Sorraia River basin. EWRA 2015 - 9<sup>th</sup> World Congress of the European Water Resources Association, 10-13 June 2015, Istambul, Turkey.

Almeida C, Segurado P, Ferreira T, Neves R. Modelling as a tool to diagnose relations between stressors and indicators in a regulated and strongly modified catchment. Symposium on Tools for Assessing Status of European Aquatic Ecosystems, 6-7 May 2015, Malmö, Sweden. Available at: [[https://waters.gu.se/digitalAssets/1531/1531442_almeida_carina.pdf Download Presentation]].

Alves C, Carvalho S, Santos M, Zenha JHS, Neves R. Monitoring and modelling Foz do Arelho submarine outfall plume. In Proceedings of 7<sup>th</sup> International Conference on Hydroinformatics HIC, 3-7 September 2006, Nice, France. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/04_7th_International_Conference_on_Hydroinformatics.pdf Download]]. (In Portuguese)

Aznar B, Grima J, Torret X, Medina V, Varela J,Chesa MJ, Llopart-Mascaró A, Garcia JA, Erill D, Batlle M, Juan T, Bosch C, Corchero A. Applying real-time advanced urban management to ensure bathing water quality in Barcelona. Proceedings of the 39th IAHR World Congress, 19-24 June 2022, Granada, Spain. Available at: [[http://dx.doi.org/10.3850/IAHR-39WC2521711920221658 Download]].

Bartolomeu S, Leitão JC, Rodrigues J, Leitão PC, Silva A. Serviço de previsão para suporte a estabelecimentos de culturas marinhas. 5.as Jornadas de Engenharia Hidrográfica, 19-21 June 2018, Lisbon, Portugal. Extended abstracts: 132-135. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Bartolomeu_etal_5JEH_2018.pdf Download]]. (In Portuguese)

Bartolomeu S, Malhadas M, Leitão P, Dias J. Influence of MeteOcean processes on MSYM sea level predictions in the Singapore and Malacca Straits. 3.as Jornadas de Engenharia Hidrográfica, 24-26 June 2014, Lisbon, Portugal. Extended abstracts: 155-158. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Bartalomeu_etal_3JEH.pdf Download]]. 

Basos N, Martins F, Rodrigues J. Bathymetry interpolation for hydrodynamic modelling. 3.as Jornadas de Engenharia Hidrográfica, 24-26 June 2014, Lisbon, Portugal. Extended abstracts: 327-330. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Basos_etal_3JEH.pdf Download]]. 

Basos N, Martins F, Rodrigues JI. GIS methods to improve numerical model grids and bathymetries. GeoMundus 2012 Conference on Geosciences, Geoinformation and Environment, 9-10 November 2012, Lisbon, Portugal. Extended abstracts available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/NBasos_Geomundus_2012.pdf Download]]. 

Basos N, Martins F, Rodrigues JI. Using MOHID GIS to aid hydrodynamic modeling in the Guadiana Estuary. 5<sup>as</sup> Jornadas de Software Aberto para Sistemas de Informação Geográfica – SASIG 5, 15-17 November 2012, Faro, Portugal. Extended abstracts: 15-27. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/NBasos_SASIG5_2012.pdf Download]]. 

Bottelli DN. Methodology applied for the design of outfall systems for different types of effluents/Metodología para el diseño de emisarios para diferentes tipos de efluentes. International Symposium on Outfall Systems, 15-18 May 2011, Mar del Plata, Argentina. Available at: [[http://www.osmgp.gov.ar/symposium2011/Papers/27_Bottelli.pdf Download]]. (In Spanish)

Bottelli DN, Santisi S, Martijena SH. A system of hydrodynamic, water quality and neural network models for predicting water quality in the Rio de la Plata estuary. 36<sup>th</sup> IAHR World Congress, 28 June–3 July 2015, The Hague, the Netherlands. Available at: [[http://89.31.100.18/~iahrpapers/80367.pdf Download]]. 

Braunschweig F, Leitao PC, Fernandes L, Pina P, Neves RJJ. The object oriented design of the integrated Water Modelling System. Developments in Water Science. 2004; 55: 1079-1090. Available at: [[http://dx.doi.org/10.1016/S0167-5648(04)80126-6 Link]].

Brito D, Fernandes R, Braunschweig F, Braunschweig S, Campuzano F, Trancoso AR. An integrated framework for implementing operational coastal models. 4.as Jornadas de Engenharia Hidrográfica, 21-23 June 2016, Lisbon, Portugal. Extended abstracts: 109-112. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Brito_etal_4JEH.pdf Download]].

Canas Â, dos Santos A, Leitão P. Implementation and validation of a SFEK data assimilation application for an hydrodynamic model of the Tagus Estuary. XI International Symposium on Oceanography of the Bay of Biscay. 2-4 April 2008, San Sebastian, Spain. Revista de Investigacion Marina, 3, 159-160. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/TagusTwinTest_AC.pdf Download]].

Campuzano F, Brito D, Juliano M, Sobrinho J, Fernandes R, Pinto L, Neves R. Integração espacial e temporal por métodos numéricos dos processos associados às bacias hidrográficas, estuários e oceano regional para a costa ocidental da Península Ibérica. VIII Congresso sobre Planeamento e Gestão das Zonas Costeiras dos Países de Expressão Portuguesa. 14-16 October 2015, Aveiro, Portugal. Artigo 114. Available at: [[http://www.aprh.pt/ZonasCosteiras2015/pdf/3A2_Artigo_114.pdf Download]]. (In Portuguese) 

Campuzano FJ, Fernandes R, Leitão PC, Viegas C, de Pablo H, Neves R. Implementing local operational models based on an offline downscaling technique: The Tagus estuary case. 2.as Jornadas de Engenharia Hidrográfica, 20-22 June 2012, Lisbon, Portugal. Extended abstracts: 105-108. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzanofj_etal_2IH_2012.pdf Download]].

Campuzano F, Juliano M, Angélico MM, Oliveira P, Neves R. Western Iberia sea surface salinity patterns due to land inputs. 5.as Jornadas de Engenharia Hidrográfica, 19-21 June 2018, Lisbon, Portugal. Extended abstracts: 210-213. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzano_etal_5JEH_2018.pdf Download]]. 

Campuzano F, Juliano M, Fernandes R, Neves R. Marine Renewable Energy Resources Atlas for Western Iberia. 4.as Jornadas de Engenharia Hidrográfica, 21-23 June 2016, Lisbon, Portugal. Extended abstracts: 105-108. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzano_etal_4JEH.pdf Download]].

Campuzano FJ, Juliano M, Fernandes R, Pinto L, Neves R. Downscalling from the deep ocean to the estuarine intertidal areas: an operational framework for the Portuguese exclusive economic zone. 6<sup>th</sup> SCACR – International Short Course/Conference on Applied Coastal Research, 4-7 June 2013, Lisbon, Portugal. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzano_Francisco_etal_SCACR.pdf Download]]. 

Campuzano FJ, Juliano M, Fernandes R, Simões A, Franz G, Pinto L, Caeiro N, Neves R. Operational modelling for supporting and characterising the Marine Renewable Energies in Western Iberia. 7<sup>th</sup> EuroGOOS conference, 28-30 October 2014, Lisbon, Portugal. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzano_et_al_EuroGOOS-2014.pdf Download]]. 

Campuzano FJ, Kenov I, Brito D, Juliano M, Fernandes R, Pinto L, Neves R. Numerical evaluation of the river nutrients influence for the Western Iberian coastal region. 3.as Jornadas de Engenharia Hidrográfica, 24-26 June 2014, Lisbon, Portugal. Extended abstracts: 263-266. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzano_etal_3JEH.pdf Download]]. 

Campuzano FJ, Kenov I, Brito D, Juliano M, Fernandes R, Pinto L, Neves R.Effect of the river discharge implementation in an operational model for the West Iberia coastal area.7<sup>th</sup> EuroGOOS conference, 28-30 October 2014, Lisbon, Portugal. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Campuzano_et_al_EuroGOOS-2014_2.pdf Download]]. 

Campuzano F, Nunes S, Malhadas MS, Nunes D, Jardim M, Neves R. Modelação da hidrodinâmica da Ilha da Madeira. 6<sup>as</sup> Jornadas Portuguesas de Engenharia Costeira e Portuária, JPECP, 8-9 October 2009, Funchal, Madeira, Portugal. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/HidrodinâmicaMadeira.pdf Download]]. (In Portuguese) 

Campuzano F, Nunes S, Malhadas MS, Nunes D, de Pablo H, Neves R. Efeito das descargas de águas residuais e emissários submarinos na produção primaria da costa sul da Ilha da Madeira. 10º Congresso da Água, 21-24 March 2010, Alvor, Algarve, Portugal. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/10CdACampuzanoetal.pdf Download]]. (In Portuguese) 

Cho C-W, Song Y-S. A modeling study on residence time in the Youngsan River estuary, Korea. OCEANS 2015, 18-21 May 2015, Genova, Italy. Available at: [[http://dx.doi.org/10.1109/OCEANS-Genova.2015.7271674 Link]].

Choi J-Y, Park J-Y, Cho K-H, Hyun S-K, Yoo J, Lee D-Y, Jun K-C. Field observation and modeling of wave set-up on a macrotidal beach: the MALIPO Experiment. Journal of Coastal Research. 2013; SI 65: 183-188. ICS 2013 - 12<sup>th</sup> International Coastal Symposium Proceedings, 8-12 April 2013 Plymouth, UK. Available at: [[http://ics2013.org/papers/Paper4246_rev.pdf Download]].

Choi J-Y, Kwon J-I, Heo K-Y, Oh J-H. Analysis of the distribution pattern of marine debris movement using reanalysis data. Fall Conference of the Korean Society of Marine Environment and Energy, 28 October 2021, Gangneung, Korea. Available at: [[https://sciwatch.kiost.ac.kr/handle/2020.kiost/41833 Download]].

Choi JW, Kwon JI, Heo KY, Choi JY. Hindcasting of search and rescue cases using the trajectory model based on KOOS (Korea Operational Oceanographic System). In: G. Malvárez & F. Navas (eds.). Global Coastal Issues of 2020. Journal of Coastal Research, SI 95: 900–904. Coconut Creek (Florida). Available at: [[https://doi.org/10.2112/SI95-175.1 Link]]

Choi JW, Song KM, Choi JY. Accuracy improvement of particle tracking model using 2-D current measurement (HF-Radar) data. In: J.L. Lee, J.-S. Yoon, W.C. Cho, M. Muin & J. Lee (eds.). The 3rd International Water Safety Symposium. Journal of Coastal Research. 2019; SI 91: 251-255. Available at: [[https://doi.org/10.2112/SI91-051.1 Download]]. 

Corral M, Vergara EP, Rubio N, Lacarra ME. Estudio de dispersión de hidrocarburos en medio marino. XVI Congreso Internacional de Ingeniería de Proyectos, 11-13 July 2012, Valencia, Spain. Available at: [[http://aeipro.com/files/congresos/2012valencia/CIIP12_0838_0845.3761.pdf Download]]. (In Spanish)

Costa S, Picado A, Vaz N, Coelho C, Portela L, Dias J. Climate Change Effects on Suspended Sediment Dynamics in a Coastal Lagoon: Ria de Aveiro (Portugal). Journal of Coastal Research. 2018; SI 85: 521-525. ICS 2018 - 15<sup>th</sup> International Coastal Symposium Proceedings, 13-18 May 2018 Haeundae, Busan, Korea. Available at: [[https://www.jstor.org/stable/26488272 Link]].

da Silva VVM, Firme ICT, Lugon Jr J, Umbelino lf. Modelagem computacional da bacia hidrográfica do Rio Macaé: simulação de eventos críticos através da ferramenta MOHID Land. 9º Anais Simpósio de Gestão Ambiental e Biodiversidade, 10–12 November 2020, online event. Available at: [[https://drive.google.com/file/d/1KXILnfnl2x6Kb6gcnyzVNBhNIHLmt2sZ/view Download]]. (In Portuguese)

Declerck A, Delpey M, Voirand T, Varkitzi I. MARINE-EO project: Monitoring and forecast of eutrophication around fish farms, a Maliakos Gulf case (Eastern Mediterranean). virtual EGU General Assembly 2021, 19–30 April 2021. Available at: [[https://doi.org/10.5194/egusphere-egu21-9961 Link]].

Dias M, Barata J, Roque L. A digital twin for training marine pollution control. In: A.R. da Silva, M.M. da Silva, J. Estima, C. Barry, M. Lang, H. Linger, & C. Schneider (eds.). Information Systems Development, Organizational Aspects and Societal Trends (ISD2023 Proceedings). 30 August–1 September 2023 Lisbon, Portugal. Available at: [[http://aisel.aisnet.org/isd2014/proceedings2023/education/2 Download]].  

Fernandes R. A new modelling tool for chemical spill modellers and responders. 7<sup>th</sup> EUROGOOS Conference Proceedings, 28-30 October 2014, Lisbon, Portugal. Available at: [[https://www.researchgate.net/profile/Rodrigo_Fernandes11/publication/319914055_A_new_modelling_tool_for_chemical_spill_modellers_and_responders/links/59c16a80a6fdcc69b92bc27a/A-new-modelling-tool-for-chemical-spill-modellers-and-responders.pdf Download]].

Fernandes R, Brito D, Braunschweig F, Trancoso AR, Campuzano F. Assessing the impact of meteorological models in coastal and estuarine surface drift forecasting systems. 4.as Jornadas de Engenharia Hidrográfica, 21-23 June 2016, Lisbon, Portugal. Extended abstracts: 117-120. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/Fernandes_etal_4JEH.pdf Download]].

Fernandes R, Campuzano F, Brito D, Juliano M, Braunschweig F, Neves R. Automated system for near-real time prediction of oil spills from EU satellite-based detection service. International Oil Spill Conference Proceedings. 15-18 May 2017, Long Beach, California, USA. Proceedings: 2017(1): 1574-1593. Available at: [[https://doi.org/10.7901/2169-3358-2017.1.1574 Download]].

Fernandes RM, Campuzano FJ, Juliano M, Braunschweig F, Neves RJ. Gestão de emergências em zonas costeiras. VIII Congresso sobre Planeamento e Gestão das Zonas Costeiras dos Países de Expressão Portuguesa. 14-16 October 2015, Aveiro, Portugal. Artigo 118. Available at: [[http://www.aprh.pt/ZonasCosteiras2015/pdf/2B2_Artigo_118.pdf Download]]. (In Portuguese) 

Fernandes R, Neves R, Braunschweig F, Brito D. A new modelling toolkit for managing oil and chemical spills in Western Europe and Morocco's Atlantic coast: The Lisbon agreement and MARPOCS project. 39th AMOP Technical Seminar on Environmental Contamination and Response. 7-9 June 2016, Halifax, Nova Scotia. Available at: [[https://www.researchgate.net/publication/310085738_A_new_modelling_toolkit_for_managing_oil_and_chemical_spills_in_Western_Europe_and_Morocco's_Atlantic_coast_the_Lisbon_Agreement_and_MARPOCS_project Download]]. 

Fernandes R, Neves R, Viegas C, Leitão P. Integration of an oil and inert spill model in a framework for risk management of spills at sea - A case study for the Atlantic area. 36<sup>th</sup> AMOP Technical Seminar on Environmental Contamination and Response, 4-6 June 2013, Halifax, Nova Scotia, Canada. pp. 326-353. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/R_Fernandes_AMOP2013.pdf Download]].

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Sousa MC, Vaz N, Alvarez I, Dias JM. Effect of Minho estuarine plume on Rias Baixas: numerical modeling approach. Journal of Coastal Research. 2013; SI 65: 2059-2064. ICS 2013 - 12<sup>th</sup> International Coastal Symposium Proceedings, 8-12 April 2013 Plymouth, UK. Available at: [[http://ics2013.org/papers/Paper3756_rev.pdf Download]].

Strzodka M, Claus R, Preuß V, Thürmer K. Advanced treatment of pit lakes using limestone and carbon dioxide. IMWA 2016 – Mining Meets Water – Conflicts and Solutions, 11-15 July 2016, Freiberg, Germany. Extended abstracts: 209-215. Available at: [[https://www.imwa.info/docs/imwa_2016/IMWA2016_Strzodka_155.pdf Download]].

Suñer D, Malgrat P, Gutiérrez E, Clochard B. COWAMA (Coastal Water Management) Integrated and real time management system of urban water cycle to protect the quality of bathing waters. Novatech 2007 - 6ème Conférence sur les techniques et stratégies durables pour la gestion des eaux urbaines par temps de pluie / Sixth International Conference on Sustainable Techniques and Strategies in Urban Water Management, Jun 2007, Lyon, France. Available at: [[https://hal.science/hal-03248871/document Download]].

Telles WR, Neto AJ, Rodrigues PPGW. Modeling the flow of a river using the MOHID platform. 22nd International Congress of Mechanical Engineering (COBEM 2013), 3-7 November 2013, Ribeirão Preto, São Paulo, Brazil. Available at: [[http://www.abcm.org.br/anais/cobem/2013/PDF/2117.pdf Download]].

Telles WR, Neto AJ, Rodrigues PPGW, Lugon Jr J. Flood estimation using inverse problem techniques coupled to Mohid platform. ICFM6 - 6<sup>th</sup> International Conference on Flood Management, 16-18 September 2014, São Paulo, Brazil. Available at: [[http://www.abrh.org.br/icfm6/proceedings/papers/PAP014743.pdf Download]].

Torres-López S, Carracedo P, Montero P, Barreiro M, Torres S, Ruiz-Villarreal M, Pérez-Muñuzuri V. Tide forecast on the Galician Coast. European Operational Oceanography: Present and Future. Proceedings of the Fourth International Conference on EuroGOOS 6–9 June 2005, Brest, France. Extended abstracts: 59-63. Available at: [[https://www.researchgate.net/profile/Vladimir-Fomin/publication/278673634_Near_Operational_Black_Sea_nowcastingforecasting_system/links/57efbba508ae886b8975303e/Near-Operational-Black-Sea-nowcasting-forecasting-system.pdf#page=76 Download]].

Venâncio A, Montero P, Costa P, Regueiro S, Brands S, Taboada J. An integrated perspective of the operational forecasting system in Rías Baixas (Galicia, Spain) with observational data and end-users. International Conference on Computational Science (ICCS 2019), 12-14 June 2019, Faro, Portugal. Extended abstracts: 229-239. Available at: [[http://dx.doi.org/10.1007/978-3-030-22747-0_18 Link]].

Viegas C N, Fernandes R, Jauch E, Aires E, Chambel P, Lopes C, Neves R. Sistema de alerta e previsão para a qualidade das águas balneares - Perfis da água balnear de Carcavelos, Torre e Santo Amaro de Oeiras. 11º Congresso da Água, 6-8 February 2012, Porto, Portugal. Available at: [[http://www.mohid.com/PublicData/Products/ConferencePapers/11CdAViegasCetal.pdf Download]]. (In Portuguese)

==Books==

Ocean modelling for coastal management - Case studies with MOHID. Eds. M. Mateus & R. Neves (2013) IST Press; 265 p. [[http://www.mohid.com/PublicData/Products/BookPapers/2013OceanModellingMOHID.pdf Download Complete Book]]

Perspectives on Integrated Coastal Zone Management in South America. Eds. R. Neves, J. Baretta & M. Mateus (2008), IST Press; 620 p. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_CoastalZoneManagementFinal.pdf Download Complete Book]]

==Book Chapters==

Ascione Kenov I, Campuzano F, Franz G, Fernandes R, Viegas C, Sobrinho J, de Pablo H, Amaral A, Pinto L, Mateus M, Neves R (2014). Advances in Modeling of Water Quality in Estuaries, In: Remote Sensing and Modeling, C.W. Finkl & C. Makowski (Eds.). Springer International Publishing, pp. 237-276. [[https://doi.org/10.1007/978-3-319-06326-3_10 Link]]

Campuzano FJ, Juliano M, Sobrinho J, de Pablo H, Brito D, Fernandes R, Neves R (2018). Coupling Watersheds, Estuaries and Regional Oceanography through Numerical Modelling in the Western Iberia: Thermohaline Flux Variability at the Ocean-Estuary Interface, In: Estuary. W. Froneman (Ed), InTech, pp. 1-17. Available at: [[https://www.intechopen.com/books/estuary/coupling-watersheds-estuaries-and-regional-oceanography-through-numerical-modelling-in-the-western-i Download Chapter]].

Campuzano FJ, Leitão PC, Gonçalves MI, Marín VH, Tironi A (2008). Hydrodynamical vertical 2D model for the Aysén Fjord, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 555-566. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D50.pdf Download Chapter]]

Campuzano FJ, Marín VH, Tironi A, Leitão PC (2008). Ecological conceptual model for a southern Chilean fjord: The Aysén Fjord case study, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 567-579. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D51.pdf Download Chapter]]

Campuzano FJ, Pierini JO, Leitão PC (2008). Hydrodynamics and sediments in Bahía Blanca estuary: Data analysis and modelling, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 483-503. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D44.pdf Download Chapter]]

Cancino L, Neves R (1995). Three-dimensional model system for baroclinic estuarine dynamics and suspended sediment transport in a mesotidal estuary, In: Computer Modelling of Seas and Coastal Regions II, C.A. Brebbia, L. Traversoni & L.C. Wobel (eds.), WIT Press. pp 353-360. Available at: [[http://www.witpress.com/Secure/elibrary/papers/CE95/CE95040FU.pdf Download Chapter]].

Cervellini PM, Pierini JO (2021). Shrimps and prawns. In: The Bahía Blanca Estuary, S.M. Fiori & P.D. Pratolongo (eds.). Springer, Cham. pp 253-272. Available at: [[https://doi.org/10.1007/978-3-030-66486-2_10 Link]]

Chambel-Leitão P, Silva A, Galvão P, Oliveira A, Domingos T, Neves R, Ramos T, Simionesi L (2020). Modelling yield, natural resource, and monetary losses of flood and drought disasters, In: Vulnerability of Agricultural Production Networks and Global Food Value Chains Due to Natural Disasters, M. Breiling & V. Anbumozhi (eds.), Economic Research Institute for ASEAN and East Asia, Jakarta, Indonesia. pp 74-85. [[https://www.eria.org/uploads/media/Books/2020-Jan/07_Vulnerability-of-Agricultural-Production-Networks_Chapter-4.pdf Download Chapter]]

De Pablo H, Brito D, Mateus M, Trancoso AR, Campuzano FJ, Pinto L, Neves R (2013). An integration methodology to estimate water fluxes and constituents budgets in coastal areas: application to the Tagus coastal area, In: Ocean modelling for coastal management. Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 213-224. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C16.pdf Download Chapter]]

Fossati M, Fernández M, Piedra-Cueva I (2013). Determination of a submarine outfall discharge location based on a 3D hydrodynamic-lagrangian high resolution model implemented for the Río de la Plata in South America, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 69-81. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C06.pdf Download Chapter]]

Fossati M, Santoro P, Fernández M, Ezzatti P, Piedra-Cueva I (2013). Development of a Río de la Plata water level height forecasting system based on the MOHID water modelling tool, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 27-40. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C03.pdf Download Chapter]]

Hyun S-K, Choi J-Y, Lee D-Y, Cho K-H (2013). Numerical simulation of the 2011 Tohoku earthquake tsunami and inundation with MOHID, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 131-141. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C10.pdf Download Chapter]]

Kotzakoulakis K, George S (2021). Advanced oil spill modeling and simulation techniques. In: Oil spill occurrence, simulation and behavior, M. R. Riazi (Ed.), CRC Press, Taylor & Francis Group. pp. 225-264. [[https://doi.org/10.1201/9780429432156 Link]]

Leitão PC, Malhadas MS, Ribeiro J, Leitão JC, Pierini J, Otero L (2013). An overview for simulating the blow out of oil spills with a three-dimensional model approach (Caribbean Coast, Colombia), In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 97-115. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C08.pdf Download Chapter]]

Leitão PC, Mateus M, Braunschweig F, Fernandes L, Neves R (2008). Modelling coastal systems: the MOHID Water numerical lab, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 77-88. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_B07.pdf Download Chapter]]

Lima EB, Watts Rodrigues PG, Silva Neto AJ, Lugon Jr. J, Irízar Mesa M, Llanes Santiago O (2013). Coupling MOHID with optimization algorithms: perspectives on the development of automatic calibration tools, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 117-130. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C09.pdf Download Chapter]]

Mateus M, Campuzano FJ (2008). The DPSIR framework applied to the Integrated Management of Coastal Areas, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 29-42. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_A03.pdf Download Chapter]]

Mateus M, Fernandes R (2008). Modelling Pollution: Oil Spills and Faecal Contamination, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 89-96. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_B08.pdf Download Chapter]]

Mateus M, Oliveira AP (2013). A numerical study of CO2 dynamics in the Tagus estuary, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 185-197. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C14.pdf Download Chapter]]

Mateus M, Pina P, Coelho H, Neves R, Leitão PC (2013). Faecal pollution modelling as a management tool in coastal areas: a case study in Estoril, Portugal, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 83-95. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C07.pdf Download Chapter]]

Mateus M, Sampaio A, Mateus S (2008). An ecological Model application to the Santos Estuary, Brazil: testing and validation, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 401-424. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D37.pdf Download Chapter]]

Mateus M, Silva A, de Pablo H, Moita MT, Quental T, Pinto L (2013). Using Lagrangian Elements to simulate alongshore transport of Harmful Algal Blooms, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 235-248. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C18.pdf Download Chapter]]

Marín VH, Tironi A, Paredes MA, Campuzano F (2008). The estuarine system of the Aysén Fjord, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 333-339. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_C30.pdf Download Chapter]]

Miranda R, Braunschweig F, Leitao P, Neves R, Martins F, Santos A (2000). MOHID 2000 - A coastal integrated object oriented model, In: Hydraulic Engineering Software VIII, W.R. Blain (ed.), WIT Press. pp 393-401. [[https://www.witpress.com/elibrary/wit-transactions-on-ecology-and-the-environment/40/4526 Download Chapter]]

Miranda R, Neves R (2009). Models of flow pattern and mass distribution, In: Handbook of ecological modelling and informatics, S.E. Jørgensen, T-S. Chon & F.A. Recknagel (eds.), WIT Press. pp 399-408. [[https://www.witpress.com/Secure/elibrary/papers/9781845642075/9781845642075020FU1.pdf Download Chapter]]

Morais P, Martins F, Chicharo MA, Lopes J, Chicharo L (2013). MOHID as a tool to evaluate the impact of water discharge from dams on the advection of estuarine fish larval stages, In: Ocean modelling for coastal management. Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 143-160. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C11.pdf Download Chapter]]

Muttin F, Campbell R (2021). Oil spill boom strategy for local authorities facing coastal and harbor pollutions: A survey of the European research project ISDAMP+, In: Marine Environmental Quality: Healthy Coastal Waters, F. Muttin & H. Thomas (eds.) John Wiley & Sons, Ltd. pp 1-19. [[https://doi.org/10.1002/9781119866220.ch1 Link]]

Muttin F, Priour D, Fernandes R (2014). Structures, materials and the environment, In: Marine Coastal and Water Pollutions - Oil Spill Studies, Muttin F (ed.), ISTE Ltd. pp 1-18. [[http://www.iste.co.uk/index.php?f=x&ACTION=View&id=797 Link]]

Neves R (2013). The Mohid concept, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 1-11. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C01.pdf Download Chapter]]

Neves R (2007). Numerical models as decision support tools in coastal areas, In: Assessment of the Fate and Effects of Toxic Agents on Water Resources, I.E. Gönenç, V.G. Koutitonsky, B. Rashleigh, R.B. Ambrose Jr., J.P. Wolfin (eds) Nato Security through Science Series - C: Environmental Security, Springer pp 171-195. Available at: [[http://www.mohid.com/PublicData/Products/BookPapers/Neves2007-Numerical_models_as_decision_support_tools_in_coastal_areas.pdf Download Chapter]]

Neves R, Brito D, Braunschweig F, Leitão PC, Jauch E, Campuzano F (2015). Managing interfaces in catchment modelling, In: Sustainable Watershed Management, I.E. Gönenç, J.P. Wolfin & R. C. Russo (eds) CRC Press/Balkema pp 19-24. Available at: [[http://www.google.pt/books?hl=pt-PT&lr=&id=BsasBAAAQBAJ&oi=fnd&pg=PA19&dq=Managing+interfaces+in+catchment+modelling&ots=0aUNNbd0uG&sig=WELxL3tToSQuczS3Ab0JXEea5FM&redir_esc=y#v=onepage&q=Managing%20interfaces%20in%20catchment%20modelling&f=false Google Books]]

Neves R, Coelho H, Taborda R, Pina P (2002). Physical processes and modelling at ocean margins, In: Ocean Margin Systems, Wefer, G., Billett, D., Hebbeln, D., Jørgensen, B.B., Schlüter, M., van Weering, T. (eds.) Springer-Verlag Berlin Heidelberg pp 99-124. Available at: [[http://www.google.com/books?id=yoJBUvthitsC&oi=fnd&pg=PA99 Google Books]] [[http://www.mohid.com/PublicData/Products/BookPapers/Neves2002-Physical_processes_and_modelling_at_ocean_margins.pdf Download Chapter]]

Neves R, Matos JS, Fernandes L, Ferreira FS (2007) Integrated Water Management, In: A Portrait of State-of-the-Art Research at the Technical University of Lisbon, Pereira, M.S. (ed.) Springer Netherlands pp 421-446. Available at: [[http://dx.doi.org/10.1007/978-1-4020-5690-1_26 Link]]

Nogueira J, Campuzano FJ, Neves R (2013). Sardine larvae vertical migration and horizontal dispersion patterns related to light intensity in the dynamic western Portuguese coast: a numerical study, In: Ocean modelling for coastal management. Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 161-173. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C12.pdf Download Chapter]]

Nogueira J, Coelho H, Juliano M, Leitão PC (2013). Alternative method to initialize Regional Ocean Models using geostrophic velocities: application to the Bay of Biscay, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 55-67. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C05.pdf Download Chapter]]

Perán AI, Campuzano FJ, Senabre T, Mateus M, Gutiérrez JM, Belmonte A, Aliaga V, Neves R (2013). Modelling the environmental and productive carrying capacity of a great scale aquaculture park in the Mediterranean coast and its implications, In: Ocean modelling for coastal management. Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 249-265. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C19.pdf Download Chapter]]

Pierini JO, Campuzano F, Marcovecchio J, Perillo GME (2008). The application of MOHID to assess the potential effect of sewage discharge system at Bahía Blanca estuary (Argentina), In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 515-522. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D46.pdf Download Chapter]]

Pierini JO, Marcovecchio J, Campuzano F, Perillo GME (2008). Evolution of salinity and temperature in Bahía Blanca estuary, Argentina, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 505-513. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D45.pdf Download Chapter]]

Pierini JO, Marcovecchio J, Campuzano F, Perillo GME (2008). MOHID oil spill in coastal zones: A case study in Bahía Blanca estuary (Argentina), In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 523-528. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D47.pdf Download Chapter]]

Pinto L, Mateus M, Ascione I, Franz G, Neves R (2013). Modelling mussel growth in Tagus estuary: a preliminary approach, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 175-183. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C13.pdf Download Chapter]]

Portela  L, Cancino L, Neves R (1992). Modelling of Tidal Flow and Transport Processes: A Case Study in the Tejo Estuary, In: Computer Modelling of Seas and Coastal Regions, P. W. Partridge (ed.), Springer Netherlands. pp 449-461. [[http://dx.doi.org/10.1007/978-94-011-2878-0_33 Link]]

Re M, García P, Lecertúa E, Menéndez ÁN (2013). Hydraulic impact studies on the coastal zone of Buenos Aires City, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 13-25. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C02.pdf Download Chapter]]

Re M, Lecertúa E, García P,  Menéndez A (2009). Zoning for Hydraulic Impact Studies on the Coastal Zone of the Plata River. Vionnet, C. (Ed.), García, M. (Ed.), Latrubesse, E. (Ed.), Perillo, G. (Ed.). (2009). River, Coastal and Estuarine Morphodynamics. RCEM 2009, Two Volume Set. London: CRC Press [[https://www.researchgate.net/profile/Mariano_Re/publication/309608192_Zoning_for_Hydraulic_Impact_Studies_on_the_Coastal_Zone_of_the_Plata_River/links/581966c908ae1f34d24aca2a/Zoning-for-Hydraulic-Impact-Studies-on-the-Coastal-Zone-of-the-Plata-River.pdf Download Chapter]].

Ribeiro RB, Sampaio AFP, Ruiz MS, Leitão JC, Leitão PC (2019). First approach of a storm surge early warning system for Santos Region, In: Climate Change in Santos Brazil: Projections, Impacts and Adaptation Options, L. Nunes, R. Greco, J. Marengo (eds.), Springer, Cham. Available at: [[https://doi.org/10.1007/978-3-319-96535-2_7 Link]]

Ruiz-Villareal M, Bolding K, Burchard H, Demirov E (2005). Coupling of the GOTM turbulence module to some three-dimensional ocean models, In: Marine Turbulence: Theories, Observations, and Models. Results of the CARTUM Project, H.Z. Baumert, J.H. Simpson & J. Sundermann (eds.), Cambridge University Press. pp 225-237. Available at: [[http://books.google.pt/books?id=HVqbdXI29i0C&pg=PA225 Google Books]][[http://www.mohid.com/PublicData/products/BookPapers/Chapter26_CARTUM.pdf Download Chapter]]

Sampaio AF, Mateus M, Ribeiro RB, Berzin G (2008). A modelling approach to the study of faecal pollution in the Santos Estuary, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 425-434. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D38.pdf Download Chapter]]

Sampaio AF, Mateus M, Ribeiro RB (2008). Assessing the impact of several development scenarios on the water quality in Santos Estuary, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 435-444.[[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D39.pdf Download Chapter]]

Seiler LMN, Fernandes EHL (2013). Assessment of primary productivity and nutrients for a coastal lagoon in Southern Brazil, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 199-212. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C15.pdf Download Chapter]]

Siqueira PGSC, Silva JAM, Gois MLB, Duarte HO, Moura MC, Silva MA, Araújo MC (2022). Numerical simulations of potential oil spills near Fernando de Noronha archipelago, In: Trends in Maritime Technology and Engineering Volume 2, C. Guedes Soares & T.A. Santos (eds.), CRC Press. pp 273-282. [[https://www.taylorfrancis.com/chapters/edit/10.1201/9781003320289-29/numerical-simulations-potential-oil-spills-near-fernando-de-noronha-archipelago-siqueira-silva-gois-duarte-moura-silva-ara%C3%BAjo Link to Chapter]]

Sobrinho JL (2013). Modelling the water quality of the coastal waters along the Aveiro region using a MOHID-3D model setup, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 225-233. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C17.pdf Download Chapter]]

Strzodka M, Preuß V (2015). Results of In-lake Liming with a Underwater Nozzle Pipeline (UNP), In: Proceedings of the 12th International Symposium Continuous Surface Mining - Aachen 2014, Lecture Notes in Production Engineering, Niemann-Delius, C (ed.), Springer International Publishing. pp 309-317. Available at: [[http://dx.doi.org/10.1007/978-3-319-12301-1_27 Link]] 

Telles WR, Brandão DN, Lugon J, Rodrigues PPGW, Neto AJS (2019). Computational modeling and simulation of surface waterflood in mountainous urban watersheds with the MOHID Platform: Case study Nova Friburgo, Brazil, In: Towards Mathematics, Computers and Environment: A Disasters Perspective, L. Lima Santos, R. Galante Negri, T de Carvalho (eds.), Springer International Publishing. pp 125-143. Available at: [[https://doi.org/10.1007/978-3-030-21205-6_7 Link]] 

Tironi A, Marin VH, Campuzano F (2008). A management tool for salmon aquaculture: Integrating MOHID and GIS applications for local waste management, In: Perspectives on Integrated Coastal Zone Management in South America, R. Neves, J. Baretta & M. Mateus (eds.), IST Press. pp 585-595. [[http://www.mohid.com/PublicData/Products/BookPapers/2008_ICZM_D53.pdf Download Chapter]]

Vaz N, Dias JM (2013). Physical analysis of a tidal channel (Espinheiro Channel, Portugal): a modelling study, In: Case studies with MOHID, M. Mateus & R. Neves (eds.), IST Press. pp 41-54. [[http://www.mohid.com/PublicData/Products/BookPapers/2013_mohidbook_C04.pdf Download Chapter]]

Veríssimo F, Martins F, Janeiro J (2021). O destino das águas residuais humanas – o exemplo Algarvio da Ria Formosa. À descoberta da Ria Formosa, J. Aníbal, A. Gomes, I. Mendes & D. Moura (eds.), Universidade do Algarve Editora. 2021. [[http://hdl.handle.net/10400.1/17341 Download Chapter]]

Zhang N, Li M, Li W (2014). Research on sediment transport and deposition in the intake open channel under the typhoon, In: Modeling and Computation in Engineering III, L. Zhang and L. Xie (eds.), Taylor & Francis group. pp 143-148. Available at: [[http://books.google.es/books?hl=es&lr=&id=N-nMAwAAQBAJ&oi=fnd&pg=PA143 Google Books]]

==Thesis==

===PhD Thesis===

Almeida C (2019). A modeling approach to estimate the impact of climate and societal scenarios on water resources quantity and quality. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_Carina_Almeida.pdf Download]]

Ascione-Kenov I (2014). Development and application of a process-oriented model for benthic marine systems. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_Isabella_Ascione_Kenov.pdf Download]]

Bernard-Jannin L (2016). Modélisation du processus de dénitrification dans les eaux souterraines des plaines alluviales. PhD Thesis, Institut National Polytechnique de Toulouse (INP Toulouse), Université de Toulouse, France. (In French) [[http://oatao.univ-toulouse.fr/15571/1/Bernard-Jannin.pdf Download]]

Brito D (2017). Integrated modelling for water Management in reservoirs and watersheds. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_DavidBrito.pdf Download]]

Calero MC (2022). Método para estudiar la viabilidad de las corrientes marinas como fuente de energía renovable en sistemas hidrodinámicos susceptibles de aprovechamiento. Casos particulares en el sur de la península Ibérica. PhD Thesis, Universidad de Málaga, Spain. [[https://riuma.uma.es/xmlui/handle/10630/25334 Download]]

Canas A (2009). Modelling and data assimilation techniques for operational hydrodynamic forecast in Tagus Estuary. PhD thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_ACanas.zip Download]]

Campuzano F (2018). Coupling watersheds, estuaries and regional seas through numerical modelling for Western Iberia. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_Francisco_Campuzano.pdf Download]]

Coelho H (2002). Modelação de processos físicos relacionados com a circulação oceânica na margem continental Ibérica. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/PhD_HenriqueCoelho.zip Download]]

Correia SP (2019). Intertidal and subtidal trematode communities: Influence of the environmental factors on cockles infection. PhD thesis. Universidade de Aveiro, Portugal. [[http://hdl.handle.net/10773/28385 Download]]

Costa S (2016). Suspended sediments in Ria de Aveiro: present and future dynamics. PhD thesis. Universidade de Aveiro, Portugal. [[http://hdl.handle.net/10773/17391 Download]]

de Noronha S (2021). Adaptação às alterações climáticas em ambiente estuarino. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[https://scholar.tecnico.ulisboa.pt/records/BjR2A9zFTp2jwbrIO_iO_cddQoAwNVeXcB8y Download]] 

de Pablo H (2022). Environmental quality assessment in a coastal area by the integration of monitoring data and modelling. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[https://scholar.tecnico.ulisboa.pt/records/2yLDZWxZvj-kDIiZQzPOCBoIAbMRdgLcPugy Link]] 

Delpey M (2012). Etude de la dispersion horizontale en zone littorale sous l'effet de la circulation tridimensionnelle forcée par les vagues. PhD thesis. Université européenne de Bretagne, France. [[http://tel.archives-ouvertes.fr/docs/00/81/44/46/PDF/MemoireThese_Delpey2012_VersionPublique.pdf Download]]

Epelde AM (2015). Modelización de procesos hidrológicos y de contaminación por nitratos mediante dos códigos numéricos (SWAT y MOHID). Cuenca agrícola del río Alegría (País Vasco). PhD thesis. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Spain. (In Spanish and English) [[https://addi.ehu.es/handle/10810/15954 Download]]

Evaristo A (2017). Modelação da hidrodinâmica e qualidade da água na Baía do Lobito. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/PhD_AntonioEvaristo.pdf Download]]

Fernandes R (2018). Risk management of coastal pollution from oil spills supported by operational numerical modelling. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_Rodrigo_Fernandes.pdf Download]]

Franz G (2017). Numerical modelling of hydrodynamics and sediment transport in coastal systems. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_GuilhermeFranz.pdf Download]]

Garcia AC (2008). Fine sediments resuspension processes and transport in Nazaré submarine canyon. PhD thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhDGarciaAC_2008.pdf Download]]

Janeiro JM (2014). Development of an operational tool for oil spill forecast: application to oil exposed regions. University of Algarve, Portugal.  	[[http://hdl.handle.net/10400.1/6865 Download]]

Leitão PC (2003). Integração de escalas e de processos na modelação no ambiente marinho. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/PhD_PauloLeit%C3%A3o.zip Download]]

Lima E (2012). Problemas inversos aplicados à identificação de parâmetros hidrodinâmicos de um modelo do estuário do rio Macaé. PhD thesis. Universidade do Estado do Rio de Janeiro, Brazil. (In Portuguese) [[https://www.bdtd.uerj.br:8443/handle/1/13649 Download]]

Malhadas MS (2015). Water quality assessment and modelling in a eutrophic coastal lagoon: A case study in the Óbidos Lagoon, Portugal. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_MadalenaSMalhadas.pdf Download]]

Martins FA (1999). Modelação matemática tridimensional de escoamentos costeiros e estuarinos usando uma abordagem de coordenada vertical genérica. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/PhD_Fl%C3%A1vioMartins.zip Download]]

Mateus M (2006). A process-oriented biogeochemical model for marine ecosystems: Development, numerical study and application. PhD thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/PhD_MarcosMateus.zip Download]]

Mendes R (2016). The Douro estuarine plume: detection, processes and dynamics. PhD thesis. University of Aveiro, Portugal. [[http://www.cesam.ua.pt/index.php?menu=202&tabela=publicationdetail&id=19380 Download]]

Monteiro A (1995). Dispersão de efluentes através de exutores submarinos um contributo para a modelação matemática. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese)

Montero P (1999). Estudio de la hidrodinámica de la Ría de vigo mediante un modelo de volúmenes finitos. PhD thesis. Universidad de Santiago de Compostela, Spain. (In Spanish) [[http://www.mohid.com/PublicData/Products/Thesis/PhD_PedroMontero.pdf Download]]

Obermann M (2007). Nutrient dynamics in temporary waters of Mediterranean catchments. PhD thesis. University of Hannover, Germany. [[http://www.mohid.com/PublicData/products/Thesis/PhDMatthias%20Obermann.pdf Download]]

Oliveira AP (2011). Fluxos de CO<sub>2</sub> na interface ar-água num sistema estuarino português e zona costeira adjacente. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/PhD_APaulaOliveria.pdf Download]]

Oliveira AR (2023). Improving streamflow calculation by combining physical models and neural networks. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[https://scholar.tecnico.ulisboa.pt/records/M4o3aEGbqkrXrwnLPMks2ReCvB9j0QvgtcJY Download]]

Pando S (2013). Modelling hydrodynamic and particle transport processes in the Nazaré submarine canyon off Portugal. PhD thesis. Jacobs University, Germany. [[https://opus.jacobs-university.de/frontdoor/index/index/docId/472 Download]]

Picado A (2016). Influence of physical processes on the primary production along the Iberian Peninsula northwestern coast. PhD thesis. Universidade de Aveiro, Portugal. [[http://hdl.handle.net/10773/17297 Download]]

Portela LI (1996). Modelação matemática de processos hidrodinâmicos e da qualidade da água no estuário do Tejo. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://repositorio.lnec.pt:8080/handle/123456789/8737 Download]]

Ribeiro R (2021). Previsão de balneabilidade com o uso da modelagem numérica operacional para as praias das baías de Santos e de São Vicente. Universidade de São Paulo, Brazil. (In Portuguese) 

Rhomad H (2022). Modélisation hydrodynamique et écologique de la Côte Atlantique Marocaine. PhD thesis. Université Cadi Ayyad, Marrakech, Morocco. [[http://www.mohid.com/PublicData/products/Thesis/PhD_HananeRhomad.pdf Download]]

Riflet G (2010). Downscaling large-scale ocean basin solutions in regional three-dimensional hydrodynamic models. PhD thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/PhD-griflet-2010.pdf Download]]

Ruiz-Villareal M (2000). Parameterization of turbulence in the ocean and application of a 3D model to the ria de Pontevedra. PhD thesis. Universidad de Santiago de Compostela, Spain. [[http://www.mohid.com/PublicData/Products/Thesis/PhD_RuizVillarreal.pdf Download]]

Santos AJ (1995). Modelo hidrodinâmico tridimensional de circulação oceânica e estuarina. PhD thesis. Technical University of Lisbon, Portugal. 

Saraiva S (2014). Modelling Bivalves in estuaries and coastal areas. PhD thesis. Amsterdam: Vrije Universiteit and Instituto Superior Técnico, Universidade de Lisboa. [[http://dare.ubvu.vu.nl/bitstream/handle/1871/51692/complete_dissertation.pdf?sequence=1 Download]]

Silva A (1991). Modelação matemática não linear de ondas de superfície e de correntes litorais. PhD thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/PhD_AdelioSilva.zip Download]]

Sobrinho J (2021). Development of new methodologies for upscaling local models into regional models. PhD Thesis, Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_Joao_Sobrinho.pdf Download]]

Sousa MCF (2013). Modelling the Minho river plume intrusion into the rias baixas. PhD thesis. University of Aveiro, Portugal. [[http://hdl.handle.net/10773/12276 Download]]

Telles WR (2014) Previsão do comportamento hidráulico de um rio com base na estimativa de coeficientes que controlam seu escoamento. Estudo de caso: Rio Bengalas, Nova Friburgo-RJ. Universidade do Estado do Rio de Janeiro, Nova Friburgo, Brasil. (In Portuguese) [[http://www.bdtd.uerj.br/handle/1/13678 Download]]

Valle M (2014). Seagrass meadows under a changing climate: habitat modelling, restoration and monitoring. PhD thesis. Universidad del País Vasco / Euskal Herriko Unibertsitatea (UPV/EHU), Spain. [[http://dx.doi.org/10.13140/2.1.2235.3606 Download]]

Vaz N (2006). Study of heat and salt transport processes in the Espinheiro Channel (Ria de Aveiro). PhD thesis. University of Aveiro, Portugal. [[http://hdl.handle.net/10773/2671 Download]]

Viegas C (2022). 3D-biogeochemical and hydrodynamic model in the Azores - a tool to understand marine ecosystem processes. PhD thesis. Universidade dos Açores, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/PhD_Claudia_Viegas.pdf Download]]

===MSc Thesis===

Abreu AL (2010). Avaliação do potencial energético das marés no estuário do Rio Douro. MSc dissertation thesis. Universidade do Porto, Portugal. (In Portuguese) [[http://hdl.handle.net/10216/59803 Download]]

Antunes I (2000). Modelação matemática da qualidade da água no estuário do Tejo. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_IsabelAntunes.zip Download]]

Babwah SR (2011). Towards a hydrodynamic operational model of the Algarve coast and St. Vincent Cape. MSc dissertation thesis. Universidade do Algarve, Portugal. [[https://sapientia.ualg.pt/handle/10400.1/5012 Download]]

Barbosa SA (2013). Modelación hidrodinámica y de calidad de agua del sistema integrado embalse muña: río Bogotá. MSc dissertation thesis. Universidad Nacional de Colombia, Bogotá, Colombia. (In Spanish) [[https://repositorio.unal.edu.co/handle/unal/51316 Download]]

Bartolomeu AS (2013). Sea level validation in MSYM model for the South China Sea. MSc dissertation thesis. Universidade de Aveiro, Portugal. [[http://hdl.handle.net/10773/12010 Download]]

Bassels Ó (2017). Implementation of the effect of turbines on water currents in MOHID Modelling System. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[https://upcommons.upc.edu/handle/2117/112828 Download]]

Basos N (2013). GIS as a tool to aid pre- and post-processing of hydrodynamic models. Application to the Guadiana Estuary. MSc dissertation thesis. Universidade do Algarve, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/MSc_thesis_Nadiia_Basos.pdf Download]]

Barão L (2007). Carbon, nitrogen and phosphorus soil cycle modeling. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/MSc_AnaBarao.pdf Download]]

Beja J (2009). Aplicação de um modelo hidrodinâmico na lagoa de Óbidos. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/MSc_JoanaBeja.pdf Download]]

Bernardes B (2007). Hydrodynamical and ecological modelling of the North Sea. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/MSc_BartolomeuBernardes.pdf Download]]

Braunschweig F (2001). Generalização de um modelo de circulação costeira para albufeiras. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_Frank.zip Download]]

Cancio N (2021). Evaluación espacio-temporal de la calidad del agua y su potencial afectación sobre el Valle Bonaerense del Río Colorado: Análisis Conceptual. MSc dissertation thesis. Facultad Regional de Bahía Blanca, Universidad Tecnológica Nacional, Argentina. (In Spanish) [[https://ria.utn.edu.ar/handle/20.500.12272/4996 Download]]

Canuto N (2019). Modelação hidrológica da bacia internacional do Guadiana. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[https://scholar.tecnico.ulisboa.pt/records/IpOFAl4vuIVrHu1NZDp9qAyXRw9l2-9GZ5ne Download]]

Carvajalino-Fernandez M (2015). Hydronumerical modelling of nutrients and oxygen in Ciénaga Grande de Santa Marta, Colombia. MSc dissertation thesis. Faculty of Civil Engineering and Geodetic Sciences, Leibniz Universität, Hannover, Germany [[http://cinto.invemar.org.co/alfresco/d/d/workspace/SpacesStore/ea8e8e17-9058-4ec7-9f87-b1ec1a962238/Hydronumerical%20Modelling%20of%20Nutrients%20and%20Oxygen%20in%20Ci%C3%A9naga%20Grande%20de%20Santa%20Marta,%20Colombia?ticket=TICKET_f7abb22f470ad5d1f571ed5d6ee9a6cad8fc54cd Download]]

Carrasco Franco AK (2021). Risk assessment of oil spills in the NEOM region. MSc dissertation thesis. King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia. [[https://repository.kaust.edu.sa/handle/10754/670293 Download]]

Casterá M (2015). Modelación numérica del transporte de efluentes en un curso fluvial : caso Río Uruguay. Universidad de la República, Uruguay. (In Spanish) [[https://www.colibri.udelar.edu.uy/jspui/handle/20.500.12008/10674 Download]]

Ceregeiro JM (2019). Tidal Farm Electric Energy Production in the Tagus River. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_JoseMariaCeregeiro.pdf Download]]

Coelho H (1996). Modelação numérica da turbulência oceânica. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_HenriqueCoelho.zip Download]]

Correia S (2019). Intertidal and subtidal trematode communities: influence of the environmental factors on cockles infection. MSc dissertation thesis. Universidade de Aveiro, Portugal. [[http://hdl.handle.net/10773/28385 Download]]

Costa J (2002). Influência de uma piscicultura de gaiolas na qualidade da água da zona envolvente. MSc dissertation thesis. Universidade do Algarve, Portugal. [[https://sapientia.ualg.pt/bitstream/10400.1/1703/1/mestrado%20JCOSTA.pdf Download]]

Dawo L (2022). Flood risk assessment in climate change scenarios in the Algarve region. MSc dissertation thesis. Faculdade de Ciências, Universidade de Lisboa. [[http://hdl.handle.net/10451/54605 Download]]

de Clippele J (1998). Cohesive sediment transport in the Tagus Estuary. MSc dissertation thesis. Diplôme d’Etudes Approfondies Européen en Modélisation de l’Environnement Marin. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_JohannesdeClippele.zip Download]]

de Souza G (2011). Modelagem matemática aplicada ao estudo da intrusão salina no baixo curso do Rio São João. MSc dissertation thesis. Instituto Federal de Educação, Ciência e Tecnologia Fluminense, Brasil. (In Portuguese) [[http://ppea.iff.edu.br/prod-cientifica/2011/Gabriel%20Lima%20de%20Souza.pdf Download]]

Demissie GA (2010). Integrated sediment transport modelling using SWAT-MOHID models in the Lake Tana subbasin, Upper Blue Nile, Ethiopia. MSc dissertation thesis. UNESCO-IHE Institute for Water Education. [[https://ihedelftrepository.contentdm.oclc.org/digital/collection/masters2/id/4440/rec/1 Download]]

Duarte S (2001). Bactérias marinhas, sua importância e efeitos no ciclo dos nutrientes - Modelo ecológico. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_SilviaDuarte.zip Download]]

Fernandes L (2005). Modelling of arsenic dynamics in the Tagus Estuary. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/MScThesis-Luis%20Fernandes.pdf Download]]

Fernandes R (2005). Modelação operacional no estuário do Tejo. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/MSc_RodrigoFernandes.pdf Download]]

Fontes CL (2000). Modelação matemática de processos diagenéticos. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_Claudia.zip Download]]

Galvão P (2007). Integrated catchment modelling Montargil case study. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_PedroGalvao.pdf Download]]

Giardino D (2009). Analysis of the physical forcing mechanisms influencing salinity transport for the lower St. Johns River. College of Engineering and Computer Science, University of Central Florida, USA. [[https://stars.library.ucf.edu/etd/4061/ Download]]

Godoy FB (2009). Modelagem hidrológico-hidrodinámica da Lagoa da conceição - SC. MSc dissertation thesis. Université de Liège. Universidade Federal de Santa Catarina, Brazil. (In Portuguese) [[http://www.tede.ufsc.br/teses/PGEA0354-D.pdf Download]]

Gomes N (2014). Modelação da circulação oceânica no Arquipélago de Cabo Verde. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_Nilton_Gomes.pdf Download]]

Jackson M (2021). Cuantificación de los efectos del cambio climático sobre el régimen medio y extremal del nivel de mar en la costa uruguaya. MSc dissertation thesis. Facultad de Ingeniería, Universidad de la República, Uruguay.  (In Spanish) [[https://hdl.handle.net/20.500.12008/26925 Download]]

Laran S (2000). A theoretical model of pelagic ecosystem and nitrogen waste in a aquaculturing pound. Application to the rearing of ''sparus aurata L.'' and ''dicentrarchus labrax L.'' in the Sado Estuary (Portugal). MSc dissertation thesis. Université de Liège, Belgium. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_SophieLaran.zip Download]]

Latandret-Solana SA (2021). Estudio de la marea y su pronóstico en la cuenca Colombia - Mar Caribe. MSc dissertation thesis. Escuela Naval de Cadetes “Almirante Padilla”, Cartagena de Indias, Colombia. (In Spanish) [[http://dx.doi.org/10.13140/RG.2.2.30919.83364 Download]]

Leitão PC (1996). Modelo de dispersão lagrangeano tridimensional. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_PauloLeit%C3%A3o.zip Download]]

Li S (2017). Evaluation of new weathering algorithms for oil spill modeling. MSc dissertation thesis. Dalhousie University, Halifax, Nova Scotia (Canada). [[http://hdl.handle.net/10222/73100 Download]]

Longo ARS (2015). Biogeochemical response of Tagus Estuary to climate change: a modelling study. MSc dissertation thesis. Universidade de Aveiro, Portugal. [[https://ria.ua.pt/bitstream/10773/15740/1/Tese.pdf Download]]

Lourenço (2022). Análise do potencial de crescimento de mexilhões azuis em estuários. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[https://scholar.tecnico.ulisboa.pt/records/zLGsKT3GZjpRLH1JQ24_pA583i5ybA7VWMeU Link]]

Machado F (2014). Hydrodynamic modeling of the Bay of La Rochelle to support the control of accidental oil spills. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[https://fenix.tecnico.ulisboa.pt/downloadFile/1970719973966004/dissertacao.pdf Download]]

Malhadas M (2008). Modelação do impacte de emissários submarinos em zonas costeiras - caso da Foz do Arelho. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_MadalenaS.Malhadas.pdf Download]]

Mateus M (1999). Modelação do ciclo biogeoquímico do azoto na zona do Cabo de S. Vicente. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_MarcosMateus.zip Download]]

Mendes J (2018). Optimization of an operational forecast system for extreme tidal events in Santos estuary (Brazil). MSc dissertation thesis. Aveiro University, Portugal. [[http://www.nmec.eu/images/teses/MScJoanaMendes.pdf Download]]

Mendes R (2010). Numerical modeling of the Ria de Aveiro plume: a preliminary study. MSc dissertation thesis. Aveiro University, Portugal. [[http://hdl.handle.net/10773/7591 Download]]

Miranda R (1997). Nitrogen biogeochemical cycle modeling in the North Atlantic Ocean. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_RicardoMiranda.zip Download]]

Mendonça FMC (2020). A python based system to manage simulations of coastal operational models. MSc dissertation thesis. Universidade do Algarve, Portugal. [[https://sapientia.ualg.pt/handle/10400.1/15472 Download]]

Monteiro R (2001). Fish Growth Modelling - Growth of European anchovy (''Engraulis encrasicolus'') in the Tagus Estuary, Portugal. MSc dissertation thesis. Diplome D'Etudes Approfondies Europeen en Modelisation de L'Environment Marin. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_RitaMonteiro.pdf Download]]

Nogueira J (2005). Estudo numérico do recrutamento de pequenos peixes pelágicos na Costa Ibérica. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/MSc_Jo%C3%A3oNogueira.pdf Download]]

Novo RC (2023). Avaliação da variação da temperatura e do nível de água em diferentes condições na Ria de Alvor: Perspetiva de melhoria de modelo. MSc dissertation thesis. Aveiro University, Portugal.

Odreski LFR (2012). Influência hidrológica nos processos hidrodinâmicos da Lagoa da Conceição - Florianópolis-SC. MSc dissertation thesis. Universidade Federal de Santa Catarina, Brazil. (In Portuguese) [[http://repositorio.ufsc.br/xmlui/handle/123456789/100971 Download]]

Oliveira D (2017). Aplicação de modelagem numérica para simulação de cheias urbanas na bacia hidrográfica urbana do Rio Belém, município de Curitiba, PR. Universidade Federal do Paraná, Curitiba, Brazil. (In Portuguese) [[https://hdl.handle.net/1884/54998 Download]]

Parreira CN (2012). Avaliação da hidrodinâmica e da poluição no Canal de Piaçaguera, no Estuário de Santos-São Vicente (SP), a partir de informações ambientais e modelagem numérica. MSc dissertation thesis. Universidade de São Paulo, São Paulo, Brazil. (In Portuguese) [[http://www.teses.usp.br/teses/disponiveis/90/90131/tde-04072012-140310/publico/CAROLINE_PARREIRA.pdf Download]]

Pereira Junior OA (2018). Análise da influência de processos hidrodinâmicos na distribuição de fito e zooplâncton no sistema estuarino de Santos - São Vicente através de modelagem numérica. MSc dissertation thesis. Instituto Oceanográfico, Universidade de São Paulo, São Paulo, Brazil. (In Portuguese) [[http://dx.doi.org/10.11606/D.21.2019.tde-11012019-105602 Download]] 

Pessanha C (2012). Modelagem computacional aplicada à gestão sanitário-ambiental da lagoa Imboassica-RJ. MSc dissertation thesis. Instituto Federal de Educação, Ciência e Tecnologia Fluminense, Brasil. (In Portuguese) [[http://ppea.iff.edu.br/prod-cientifica/2012/Cassius%20Marcelo%20Dutra%20Pessanha.pdf Download]]

Pina P (2001). An integrated approach to study the Tagus estuary water quality. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_PedroPina.pdf Download]]

Pina RDS (2020). Contributions to integrated modelling of stormwater flooding. MPhil dissertation thesis. Imperial College London, UK. [[https://doi.org/10.25560/80186 Download]] 

Pires PC (2005). Desenvolvimento de uma metodologia de valiação de riscos ambientais para apoiar a elaboração de planos de emergência. MSc dissertation thesis. Universidade Nova de Lisboa, Portugal. (In Portuguese) [[http://run.unl.pt/bitstream/10362/3635/1/TSIG0013.pdf Download]]

Poljak D (2020). Numerical modeling of conservative pollution in the Mouth of River Jadro using the software package MOHID. MSc dissertation thesis. University of Split, Croatia. (In Croatian) [[https://urn.nsk.hr/urn:nbn:hr:123:578791 Link]]

Ramos P (2002). Modelação matemática da qualidade da água no estuário do Tejo. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_PaulaRamos.zip Download]]

Reis F (2021). Assessing the potential for macroalgae aquaculture in coastal and estuarine areas. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[http://www.mohid.com/PublicData/Products/Thesis/MSc_FranciscoReis.pdf Download]]

Ribeiro RB (2012). Modelagem numérica da influência das fontes de nutrientes sobre a variabilidade da biomassa fitoplanctônica no sistema estuarino de Santos-São Vicente. MSc dissertation thesis. Universidade de São Paulo, São Paulo, Brazil.

Rodrigues J (2015). The Tagus estuarine plume variability: impact in coastal circulation and hydrography. MSc dissertation thesis. Universidade de Aveiro, Portugal. [[http://www.nmec.eu/images/teses/TESE_FINAL_jgrr.pdf Download]]

Rodrigues V (1997). Modelação do transporte e dispersão de constituintes em zonas costeiras. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_ValdemarRodrigues.zip Download]]

Rosa A (2017). Modelação hidrodinâmica da Baía de Luanda. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[https://fenix.tecnico.ulisboa.pt/downloadFile/563345090415716/Dissertacao_ADMIRROSA.pdf Download]]

Rosa MSS (2010). Hydrodynamical and biogeochemical modeling study of Sado estuary. MSc dissertation thesis. University of Aveiro, Portugal. [[http://ria.ua.pt/handle/10773/7392 Download]]

Salgueiro D (2014). Modelação do efeito da pluma térmica da central termoelétrica de Sines no ambiente marinho. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_Dora_Salgueiro.pdf Download]]

Sampaio AFP (2011). Avaliação da correlação entre parâmetros de qualidade da água e socioeconômicos no complexo estuarino de Santos – São Vicente, através de modelagem numérica ambiental. MSc dissertation thesis. Universidade de São Paulo, São Paulo, Brazil. (In Portuguese) [[http://dx.doi.org/10.11606/D.90.2011.tde-23112011-105215 Download]]

Santos LA (2010). Modelagem numérica da dinâmica do sistema estuarino Caravelas - Peruípe, BA. MSc dissertation thesis. Universidade de São Paulo, São Paulo, Brazil. [[http://dx.doi.org/10.11606/D.21.2010.tde-27072011-155717 Download]]

Saraiva S (2005). Modelação ecológica da Ria de Aveiro: o papel das macroalgas. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/MSc_SofiaSaraiva2005.pdf Download]]

Seiler LMN (2015). Modelagem numérica da Lagoa dos Patos: variação espacial e temporal da qualidade da água. MSc dissertation thesis. Instituto Oceanográfico, Universidade de São Paulo, São Paulo, Brazil. (In Portuguese) [[http://dx.doi.org/10.11606/D.21.2015.tde-23042015-103406 Download]]

Silva JC (2013). Análise numérica da influência dos aportes fluviais e antrópicos sobre a hidrodinâmica residual e a qualidade da água da Lagoa da Conceição - Florianópolis-SC. MSc dissertation thesis. Universidade Federal de Santa Catarina, Brazil. (In Portuguese) [[https://repositorio.ufsc.br/xmlui/handle/123456789/122929 Download]]

Silva JP (2016). Comparative study of the hydrostatic and non-hydrostatic versions of the MOHID model in performance benchmarking for Tsunami events. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[https://fenix.tecnico.ulisboa.pt/downloadFile/281870113703530/Dissertacao_V1.3_Final.pdf Download]]

Silva S (1997). Modelação numérica de derrames de hidrocarbonetos no mar: Aproximação Lagrangeana do transporte. MSc dissertation thesis. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_SergioRiveiroeSilva.pdf Download]]

Sobrinho JL (2012). Balanço de nutrientes na plataforma continental ao largo da Região de Aveiro. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/MSc_JoãoSobrinho.pdf Download]]

Tavares JH (2011). Estudo de disponibilidade hídrica do baixo curso do Rio Macaé utilizando modelagem computacional. MSc dissertation thesis. Instituto Federal de Educação, Ciência e Tecnologia Fluminense, Brasil. (In Portuguese) [[http://ppea.iff.edu.br/prod-cientifica/2011/Jose%20Henrique%20da%20Silva%20Tavares.pdf Download]]

Theias H (2005). Numerical modeling of non-hydrostatic processes in estuarine and coastal regions. MSc dissertation thesis. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/MSc_HernaniTheias2005.pdf Download]]

Tironi A (2006). Herramienta de gestión para la salmonicultura en Bahia Chacabuco. MSc dissertation thesis. Universisdad de Chile, Chile. (In Spanish)[[https://repositorio.uchile.cl/handle/2250/192588 Download]]

Torres Marchena CA (2021). Dinámica hidro-sedimentaria en estuarios y costas: sensibilidad a la variabilidad estacional en las condiciones de flujo y transporte. MSc dissertation thesis. Pontificia Universidad Católica de Chile, Chile. (In Spanish) [[https://repositorio.uc.cl/xmlui/handle/11534/60563 Download]]

Vanzella P (2021). Water Dynamics and Role of Groundwater in the 'Lagoa dos Barros', South of Brazil. MSc dissertation thesis. Instituto Superior Técnico, Universidade de Lisboa, Portugal. [[https://scholar.tecnico.ulisboa.pt/records/MGlJmZre7RpLF-zykOk2nJ5mcPPgWEOa6jti Download]] 

Vargas CI (2012). Salinity patterns adjustment to climate change in Ria de Aveiro. Universidade de Aveiro, Portugal. [[http://hdl.handle.net/10773/9743 Download]]

Venâncio A (2013).Influência de plumas de água doce na hidrodinâmica do estuário da Ria de Arousa (NW Espanha), uma abordagem de modelação matemática. MSc dissertation thesis. Universidade do Algarve, Portugal. (In Portuguese) [[https://sapientia.ualg.pt/handle/10400.1/6114 Download]]

Verelst N (2008). Variability  of  water  fluxes  off  Portugal  derived  from  an  operational model. MSc dissertation thesis. Instituto  Superior  Técnico,  Technical University of Lisbon, Portugal; Université  de  Liège, Belgium. [[http://www.mohid.com/PublicData/products/Thesis/MSc_Nathalie_Verelst.pdf Download]]

Veríssimo FAA (2017). Impact of Albufeira bay outfall plumes in bathing water quality, a modelling approach. MSc dissertation thesis. Universidade do Algarve, Portugal. [[https://sapientia.ualg.pt/handle/10400.1/10170 Download]]

===Final Course Dissertations===

Astrida N (2022). Distribution of suspended sediment concentration in Jakarta Bay. Institut Pertanian Bogor, Bogor, Indonesia. (In Indonesian) [[http://repository.ipb.ac.id/handle/123456789/111579 Link]]

Brito D (2005). Integração de detecção remota, dados ''in-situ'' e modelos numéricos no estudo do transporte de sedimentos coesivos no estuário do Tejo. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/TFC_DavidBito.pdf Download]]

Carmo M (2005). Modelação do transporte de sedimentos em ambientes costeiros. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/TFC_miguelcarmo.pdf Download]]

Cunha MM (1998). Impacte resultante da variação do regime de caudais sobre o estuário do Guadiana. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/TFC_MarioCunha.zip Download]]

Fernandes L (2001). Transporte de poluentes em estuários. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/products/Thesis/TFC_LuisFernandes.pdf Download]]

Fernandes R (2001). Modelação de derrames de hidrocarbonetos. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/TFC_RodrigoFernandes.pdf Download]]

Galvão P (2002). Solute Dynamics in Unsaturated Soil. Final Course Dissertation. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/TFC_PedroGalvao.pdf Download]]

García Gallego J & Salcedo Salgado J (2020). Modelación de transporte de nutrientes para el análisis del estado trófico de la Ciénaga de Betancí. Final Course Dissertation. Universidad De Córdoba, Colombia. (In Spanish) [[https://repositorio.unicordoba.edu.co/handle/ucordoba/3890 Download]]

Hidayat R (2019). Thermal dispersion model of Palabuhanratu thermal power plant (PLTU) discharge water. Institut Pertanian Bogor, Bogor, Indonesia. (In Indonesian) [[http://repository.ipb.ac.id/handle/123456789/100350 Link]]

Lecaros S (2019). Evaluación de las condiciones hidrodinámicas y parámetros medioambientales para el diseño ambiental de un emisario submarino en la zona este de la Bahía de Pargua, X Región, Chile. (In Spanish) [[https://ingenieriaoceanica.uv.cl/images/stories/Memorias/2019/2019-11-20-RESUMEN-SOFIA-LECAROS.pdf Download Summary]] [[https://ingenieriaoceanica.uv.cl/images/stories/Memorias/2019/2019-11-20-DEFENSA-SOFIA-LECAROS.pdf Download Presentation]]

Muñoz BF (2016). Planteamientos y análisis de diferentes sistemas de conexión río Cauca-Laguna de Sonso para el mejoramiento de la circulación de las corrientes en la laguna. Universidad del Valle, Colombia. (In Spanish) [[http://bibliotecadigital.univalle.edu.co/handle/10893/10124 Download]]

Pina P (1998). O impacte das dragagens no transporte de sedimentos coesivos no estuário do Tejo. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/TFC_PedroPina.zip Download]]

Primadiani GAD (2022). Thermal dispersion modelling of Labuan power plant wastewater discharge. Institut Pertanian Bogor, Bogor, Indonesia. (In Indonesian) [[http://repository.ipb.ac.id/handle/123456789/112214 Link]]

Rachman MF (2020). Modelling plastic waste discharge from rivers emptying into Jakarta Bay: the case of pre and post integrated development of coastal national capital (PTPIN). Institut Pertanian Bogor, Bogor, Indonesia. (In Indonesian) [[http://repository.ipb.ac.id/handle/123456789/103306 Link]]

Rojas S (2005). Modelación de derrames de crudo en cauces - aplicación al Río Magdalena. Final Course Dissertation. Universidad de Los Andes, Colombia. (In Spanish) [[http://hdl.handle.net/1992/22150 Download]]

Ruiz MS (2016). Estudo Comparativo do Impacto da Poluição Difusa na Balneabilidade das Praias Localizadas nas Baías de Santos e São Vicente (2014-2015). Universidade Santa Cecília, Brazil. (In Portuguese) [[https://cursos.unisanta.br/civil/souza-ruiz.asp Download]]

Salgueiro PB (2002). Modelação matemática de dragagem do canal da barra e da baia de rotação do terminal de contentores do estuário do Sado. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/TFC_PedroSalgueiro.zip Download]]

Saraiva AS (2001). Produção primária de biomassa no estuário do Tejo: estudo da variabilidade das descargas. Final Course Dissertation. Technical University of Lisbon, Portugal. (In Portuguese) [[http://www.mohid.com/PublicData/Products/Thesis/TFC_SofiaSaraiva.pdf Download]]

Syam IH (2021). 3-Dimensional cohesive sediment distribution model pre and post PLTU jetty in Cimandiri River estuary, Palabuhanratu Bay. Institut Pertanian Bogor, Bogor, Indonesia. (In Indonesian) [[	http://repository.ipb.ac.id/handle/123456789/106321 Link]]

Trancoso AR (2002). Modelling macroalgae in estuaries. Final Course Dissertation. Technical University of Lisbon, Portugal. [[http://www.mohid.com/PublicData/products/Thesis/TFC_RosaTrancoso.pdf Download]]

Widyanto MR (2021). Modelling flow patterns and sedimentation rates in Cilacap ocean fishing port ponds. Institut Pertanian Bogor, Bogor, Indonesia. (In Indonesian) [[http://repository.ipb.ac.id/handle/123456789/109733 Link]]

==Reports==

Action Modulers (2013). Urban Floods - Final report on numerical modeling of urban floods in 4 Portuguese cities. Report prepared for Climate Change Research Group (CIAM) [[https://www.apseguradores.pt/Portals/0/doc/estudos/ModelacaoHidrodinamica.pdf Download]] 

Barreto I, Ezzatti P, Fossati M. (2009). Estudio inicial del modelo MOHID - Reporte Técnico RT 09-10. PEDECIBA Informática, Instituto de Computación – Facultad de Ingeniería, Universidad de la República, Montevideo, Uruguay. [[http://www.fing.edu.uy/inco/pedeciba/bibliote/reptec/TR0910.pdf Download]] (In Spanish)

Barreto I, Ezzatti P, Fossati M. (2010). Instalación de MOHID en Linux - Reporte Técnico RT 10-03. PEDECIBA Informática, Instituto de Computación – Facultad de Ingeniería, Universidad de la República, Montevideo, Uruguay. [[http://www.fing.edu.uy/inco/pedeciba/bibliote/reptec/TR1003.pdf Download]] (In Spanish)

Barreto I, Ezzatti P, Fossati M. (2011). Inclusión de estrategias de paralelismo en MOHID - Reporte Técnico RT 11-03. PEDECIBA Informática, Instituto de Computación – Facultad de Ingeniería, Universidad de la República, Montevideo, Uruguay. [[http://www.fing.edu.uy/inco/pedeciba/bibliote/reptec/TR1103.pdf Download]] (In Spanish)

Campuzano-Guillén FJ, Allen JH, Scott T. (2004). The numerical modelling of ecosystem response to nutrients: Application to the Scheldt estuary and plume. IECS (Institute of Estuarine and Coastal Studies) report, University of Hull, for the European Commission, contract nº EVK3-CT-2000-00040 “EUROTROPH” (report 2 of 4). [[http://www.mohid.com/PublicData/Products/Reports/EurotrophReport.pdf Download]]

Campuzano FJ, Juliano M, McIlvenny J, Goddijn-Murphy L, Fernandes R, Neves R. (2015) The WaveGlider Mission in Portugal. Assessment of the WaveGlider technology for sea conditions long term monitoring applied to energy resource evaluation. Report for the Turnkey Project (Atlantic area Interreg project Contract Number: 2013-1/279). [[http://www.mohid.com/PublicData/Products/Reports/The_WaveGlider_mission_in_Portugal.pdf Download]]

Campuzano FJ, Juliano M, Fernandes R, Neves R. (2015) Marine Renewable Energy Resources - Atlas for Continental Portugal. Report for the EnergyMare Project (Atlantic area Interreg project Contract Number: 2011-1/157). [[http://www.mohid.com/PublicData/Products/Reports/Marine_Renewable_Energy_Resources-Atlas_for_Continental_Portugal.pdf Download]]

Centro de Ecologia Aplicada (2009). Modelacion calidad de aguas en cuencas Baker y Pascua. Report prepared for HidroAysen. [[https://www.yumpu.com/es/document/read/44632463/modelacion-calidad-de-aguas-en-cuencas-baker-y-pascua Download]]

Deckers D, van Dijk M, Grund M, Hendrickx G, de Koning R, Smit N (2018). PoDeA, Port development Argentina. Delft University of Technology. [[http://resolver.tudelft.nl/uuid:e7bd969e-2c83-49c2-b66e-323a162c8417 Download]]

Desmit X, Lacroix G, Thieu V, Menesguen A, Dulière V, Campuzano F, Billen G, Neves R, Lancelot C, Gypens N, Dussauze M, Garnier J, Silvestre M, Passy P, Lassaletta L, Guittard G, Théry S, Thouvenin B, Garcia C, Pinto L, Sobrinho J, Mateus M, Ascione Kenov I (2015). Ecosystem Models as Support to Eutrophication Management in the North Atlantic Ocean (EMoSEM). EMoSEM project Final Report [[https://archimer.ifremer.fr/doc/00292/40301/ Download]]

Fernández M, Santero P, Fossati M, Dufrechou E, Ezzatti P (2011). Estudio de un modelo hidrodinámico sobre arquitecturas multi-core - Reporte Técnico RT 11-16. PEDECIBA Informática, Instituto de Computación – Facultad de Ingeniería, Universidad de la República, Montevideo, Uruguay. [[https://www.colibri.udelar.edu.uy/bitstream/123456789/3457/1/TR1116.pdf Download]] (In Spanish)

Fernandes R, Necci A, Krausmann E. Model(s) for the dispersion of hazardous substances in floodwaters for RAPID-N Joint Research Centre (JRC) Reports. EUR 30968 EN, Publications Office of the European Union, Luxembourg, 2022, ISBN 978-92-76-46707-6, doi:10.2760/849778, JRC127375. [[http://dx.doi.org/10.2760/849778 Download]]

ISDAMP+ (2015). Improvements of Shorelines Defences Against Marine Pollution. Final Technical Report.(DG ECHO - Civil Protection Financial Instrument Project Ref: 638516/2012/ECHO/A5/SUB). [[http://isdamp.eu/wp-content/uploads/ISDAMPFinalReport.pdf Download]]

Leitão P (2014). MOHID implementation in parallel mode following a domain decomposition approach to the Rias Baixas area. [[https://www.researchgate.net/publication/309619365_MOHID_implementation_in_parallel_mode_following_a_domain_decomposition_approach_to_the_Rias_Baixas_area Download]]

Leitão P (2014). MOHID parallelization upgrade following a domain decomposition approach. Report for the EnergyMare Project (Atlantic area Interreg project Contract Number: 2011-1/157). [[https://www.researchgate.net/publication/309487581_MOHID_parallelization_upgrade_following_a_domain_decomposition_approach Download]]

Martins F, Wolanski E (2015). The pattern and intrusion of the Fly River flood plume to the Gulf of Papua and the Torres Strait - Preliminary numerical modelling results. Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University. [[https://research.jcu.edu.au/tropwater/publications/1538ThepatternandintrusionoftheFlyRiverfloodplume.pdf Download]]

Romero I, Cambronero P, González JA, Molines J, Pachés MAV, Martínez R, Serra J, Pulido M, Barat R (2020). Estado ecológico de la masa de agua costera C017: Santa Pola-Guardamar del Segura, dinámica litoral, fuentes de contaminación y sus medidas de gestión. IIAMA - Instituto de Ingeniería del Agua y Medio Ambiente, Universitat Politècnica de València. (In Spanish) [[https://agroambient.gva.es/documents/163005665/172953582/UPV_Informe+2020+GVA+Recursos+Hidricos.pdf/4ceee99b-d918-4d96-9a1a-40a88f46a4bb Download]]

Tecnoambiente (2019). Análisis de soluciones para el vertido cero al Mar Menor proveniente del Campo de Cartagena. Clave: 07.803-0177/0411. Modelización del vertido al Mar Mediterráneo a través de un nuevo emisario submarino en el Mojón. Ministerio para la Transición Ecológica y el Reto Demográfico. Gobierno de España (In Spanish) [[https://www.miteco.gob.es/es/agua/temas/concesiones-y-autorizaciones/Mar-Menor-Campo-de-Cartagena-Vertido-Cero.aspx Download]]

USAID (2010). Informe técnico 2: resultados de la simulación hidrodinámica y análisis para la RSV el salado (Ecuador). CIIFEN - Centro Internacional para la Investigación del Fenómeno de El Niño. [[http://www.ciifen.org/sitio-antiguo/images/stories/Herramientas_y_Recursos/Informe_Simulacion_Hidrodinamica_RPF_Manglares_El_Salado.pdf Download]] (In Spanish)

==Manuals==

User Manual of MOHID Graphical User Interfaces - User Manual for MOHID GUI, GIS, Postprocessor & Time Series Editor 
*[[http://www.mohid.com/PublicData/Products/Manuals/MOHID%20UInterface.pdf Download English Version (2005)]] 
*[[http://www.mohid.com/PublicData/Products/Manuals/MOHID%20UInterface_pt.pdf Download Portuguese Version (2011)]]

User Manual of MOHID Studio [[http://wiki.actionmodulers.com/wiki/index.php?title=MOHID_Studio_-_User_Guide_-_v.2.0 Link]]

Coupling Water-Atmosphere User Manual [[http://wiki.mohid.com/index.php?title=Coupling_Water-Atmosphere_User_Manual Link]]

Water Quality Model: Equations & Keywords (2002) [[http://www.mohid.com/PublicData/Products/Manuals/WQM_Users_Manual.pdf Download]]

MOHID Description: Description of the 3D water modeling system Mohid (2003) [[http://www.mohid.com/PublicData/Products/Manuals/Mohid_Description.pdf Download]]

Technical Manual of the MOHIDJET (2003) [[http://www.mohid.com/PublicData/Products/Manuals/MOHIDJET.pdf Download]]

MOHID WaterQuality Module Manual (2006) [[http://www.mohid.com/PublicData/Products/Manuals/WaterQualityModuleManual.pdf Download]]

Light parameterization in MOHID (2011) [[http://www.mohid.com/PublicData/Products/Manuals/manual_light_param_mohid_v1.pdf Download]]

MOHID Fish larvae manual (2012) [[http://www.mohid.com/PublicData/Products/Manuals/MOHIDfishlarvae_manual.pdf Download]]

MOHID parallelization following a domain decomposition approach (2014) [[http://www.mohid.com/PublicData/Products/Manuals/Mohid_MPI_DomainDecomposition.pdf Download]]

MOHID Studio Quick Start Guide for MOHID Land (2016) [[http://www.mohid.com/PublicData/Products/Manuals/MOHID_Studio_-_MOHID_Land_Quick_Start_Guide_v3.pdf Link]]

MOHID Studio Quick Start Guide for MOHID Water (2016) [[http://www.mohid.com/PublicData/Products/Manuals/MOHID_Studio_-_MOHID_Water_Quick_Start_Guide_v3.pdf Link]]

MOHID Module Bivalve Manual (2019) [[http://www.mohid.com/PublicData/Products/Manuals/MOHID_Module_Bivalve_Manual.pdf Download]]

MOHID Lagrangian - Installation Guide v20.10 (2020) [[http://www.mohid.com/PublicData/Products/Manuals/MOHID-Lagrangian-Installation-Guide_20.10.pdf Download]]

MOHID Lagrangian - Short User Guide v20.10 (2020) [[http://www.mohid.com/PublicData/Products/Manuals/MOHID-Lagrangian_Short_User_Guide_v20.10.pdf Download]]

==Add your Publication==

If you have a publication related to the MOHID Modelling System and you want to include it in the MOHID bibliography list, please let us know by sending an email to [mailto:applications@mohid.com applications@mohid.com] with the reference and the link where it can be found. Thank you very much for your collaboration.