Difference between revisions of "Keyword list"

Revision as of 12:13, 23 August 2019 (view source) Francisco (talk | contribs) (→‎Module SedimentQuality) ← Older edit		Latest revision as of 01:05, 10 May 2025 (view source) Francisco (talk | contribs) (→‎Module Benthos)
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Line 19:		Line 19:
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|BIOSI_DECAY_RATE	+	|ANOXIA_RELEASE
−	|Biogenic silica dissolution rate	+	|Compute nutrient release under anoxic conditions
−	|
−	|
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|DIATOMS	+	|BACMINSUB
−	|Compute diatoms mortality	+	|Minimum substrate concentration for bacterial uptake
−	|
−	|
	|		|
	|		|
		+	|0.01
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|DIATOMS_MORTALITY	+	|BACNCONS
−	|Diatoms mortality rate when deposited	+	|Nitrogen saturation constant for bacteria
−	|
−	|
	|		|
	|		|
		+	|0.08
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|DIATOMS_NC_RATIO	+	|BACT
−	|Diatoms Nitrogen/Carbon ratio	+	|Compute bacteria
−	|
−	|
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|DIATOMS_PC_RATIO	+	|BACT_MORTALITY
−	|Diatoms Phosphorus/Carbon ratio	+	|Mortality rate of bacteria
−	|
−	|
	|		|
	|		|
		+	|0.1
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|DIATOMS_SIC_RATIO	+	|BACT_NC_RATIO
−	|Diatoms Silica/Carbon ratio	+	|Nitrogen to carbon ratio for bacteria
−	|
−	|
	|		|
	|		|
		+	|0.18
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|DT	+	|BACT_PC_RATIO
−	|Time step to compute benthic biogeochemical processes	+	|Phosphorus to carbon ratio for bacteria
−	|
−	|
	|		|
	|		|
		+	|0.024
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|MIN_OXYGEN	+	|BIOSI_DECAY_RATE
−	|Minimum oxygen concentration for mineralization to occur	+	|Biogenic silica dissolution rate
−	|
−	|
	|		|
	|		|
		+	|0.1
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|NC_RATIO	+	|BMAXUPTA
−	|Nitrogen/Carbon ratio of organic matter	+	|Maximum uptake rate of bacteria
−	|
−	|
	|		|
	|		|
		+	|0.2
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|NITROGEN	+	|BOTTOMRDEPTH
−	|Compute nitrogen processes	+	|Depth of the bottom reactor (m)
−	|
−	|
	|		|
	|		|
		+	|0.3
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|OXYGEN	+	|DIATOMS
−	|Compute oxygen processes	+	|Compute diatoms mortality
−	|
−	|
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PC_RATIO	+	|DIATOMS_MORTALITY
−	|Phosphorus/Carbon ratio of organic matter	+	|Diatoms mortality rate when deposited
	|		|
	|		|
		+	|0.03
	|		|
		+	|Real
		+	|-
		+	| Base 1
		+	|Benthos
		+	|DIATOMS_NC_RATIO
		+	|Diatoms Nitrogen/Carbon ratio
	|		|
	|		|
−	|-	+	|0.18
−	| rowspan="2" |Base 1
−	| rowspan="2" |Benthos
−	| rowspan="2" |PELAGIC_MODEL
−	| rowspan="2" |Pelagic model name to which Module Benthos will be coupled
−	|LifeModel
−	|
−	| rowspan="2" |
−	| rowspan="2" |
−	| rowspan="2" |
−	|-
−	|WaterQuality
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PHOSPHORUS	+	|DIATOMS_PC_RATIO
−	|Compute phosphorus processes	+	|Diatoms Phosphorus/Carbon ratio
−	|
−	|
	|		|
	|		|
		+	|0.024
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PHYTO	+	|DIATOMS_SIC_RATIO
−	|Compute phytoplankton mortality	+	|Diatoms Silica/Carbon ratio
−	|
−	|
	|		|
	|		|
		+	|0.07
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PHYTO_MORTALITY	+	|DT
−	|Phytoplankton mortality rate when deposited	+	|Time step to compute benthic biogeochemical processes
−	|
−	|
−	|
	|		|
	|		|
		+	|3600
		+	|seconds
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PHYTO_NC_RATIO	+	|MINERALIZATION
−	|Phytoplankton Nitrogen/Carbon ratio	+	|Compute mineralization of organic matter
−	|
−	|
	|		|
	|		|
		+	|1
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PHYTO_PC_RATIO	+	|MIN_OXYGEN
−	|Phytoplankton Nitrogen/Carbon ratio	+	|Minimum oxygen concentration for mineralization to occur
−	|
−	|
	|		|
	|		|
		+	|1e-5
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PON_DECAY_RATE	+	|NC_RATIO
−	|Particulate organic nitrogen mineralization rate	+	|Nitrogen/Carbon ratio of organic matter
−	|
	|		|
	|		|
		+	|0.18
	|		|
	|		|
Line 212:		Line 209:
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|PON_DECAY_TFACTOR	+	|NH4R
−	|Particulate Organic Nitrogen temperature influence factor in mineralization Rate	+	|NH4 release rate from sediment under anoxia
−	|
−	|
	|		|
	|		|
		+	|0.001
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|POP_DECAY_RATE	+	|NH4R_TFACTOR
−	|Particulate organic phosphorus mineralization rate	+	|Temperature factor for NH4 release
−	|
−	|
	|		|
	|		|
		+	|1.02
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|POP_DECAY_TFACTOR	+	|NITROGEN
−	|Particulate Organic Phosphorus temperature influence factor in mineralization Rate	+	|Compute nitrogen processes
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Base 1
		+	|Benthos
		+	|OXYGEN
		+	|Compute oxygen processes
	|		|
	|		|
		+	|0
		+	|
		+	|Boolean
		+	|-
		+	| rowspan="3" |Base 1
		+	| rowspan="3" |Benthos
		+	| rowspan="3" |O2_METHOD
		+	| rowspan="3" |Method for oxygen limitation
		+	|1
		+	|Default
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|2
		+	|Monod
		+	|-
		+	|3
		+	|Exponential
	|-		|-
	| Base 1		| Base 1
	|Benthos		|Benthos
−	|SILICA	+	|PC_RATIO
		+	|Phosphorus/Carbon ratio of organic matter
	|		|
	|		|
		+	|0.024
	|		|
		+	|Real
		+	|-
		+	| rowspan="2" |Base 1
		+	| rowspan="2" |Benthos
		+	| rowspan="2" |PELAGIC_MODEL
		+	| rowspan="2" |Pelagic model name to which Module Benthos will be coupled (mandatory)
		+	|LifeModel
	|		|
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|WaterQuality
	|		|
−	|
−	|}
−
−	=== Module CEQUALW2===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleCEQUALW2.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|CEQUALW2	+	|Benthos
−	|DTSECONDS	+	|PHOSPHORUS
−	|time step, in seconds, between two CEQUALW2 calls	+	|Compute phosphorus processes
		+	|
	|		|
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Base 1
		+	|Benthos
		+	|PHYTO
		+	|Compute phytoplankton mortality
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
−	|CEQUALW2	+	|Benthos
−	|NAME	+	|PHYTO_MORTALITY
−	|Algae Property name as defined on Module GlobalData	+	|Phytoplankton mortality rate when deposited
	|		|
	|		|
		+	|0.03
	|		|
	|		|
−	|	+	|-
−	|}	+	| Base 1
−		+	|Benthos
−	=== Module Discharges===	+	|PHYTO_NC_RATIO
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDischarges.F90 Source Code]	+	|Phytoplankton Nitrogen/Carbon ratio
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 1
−	|Discharges
−	|ALTERNATIVE_LOCATIONS
−	|Activates the automatic search for alternative locations, when the discharge point is not a covered point
−	|
	|		|
	|		|
		+	|0.18
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|CREST_HEIGTH	+	|PHYTO_PC_RATIO
−	|Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).	+	|Phytoplankton Nitrogen/Carbon ratio
−	|
	|		|
	|		|
		+	|0.024
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|DATA_BASE_FILE	+	|PO4R
−	|Definition of the data base time series file. If there is one, model assumes that the discharge is time variable	+	|PO4 release rate from sediment under anoxia
−	|
−	|
	|		|
	|		|
		+	|0.001
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|DEFAULT_FLOW_VALUE	+	|PO4R_TFACTOR
−	|Default flow value	+	|Temperature factor for PO4 release
−	|
−	|
	|		|
	|		|
		+	|1.02
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|DEFAULT_VELOCITY_VALUE	+	|POMPOOLS
−	|Default velocity associated with the discharge. Important to compute momentum fluxes	+	|Compute particulate organic matter pools
−	|
−	|
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|DEFAULTVALUE	+	|PON_DECAY_RATE
−	|Water property value	+	|Particulate organic nitrogen mineralization rate
−	|
−	|
	|		|
	|		|
		+	|0.1
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|DESCRIPTION	+	|PON_DECAY_TFACTOR
−	|Discharge description	+	|Particulate Organic Nitrogen temperature influence factor in mineralization Rate
−	|
−	|
	|		|
	|		|
		+	|1.02
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|FLOW_COLUMN	+	|POP_DECAY_RATE
−	|Column where the flow is defined in the data base time series file	+	|Particulate organic phosphorus mineralization rate
−	|
−	|
	|		|
	|		|
		+	|0.03
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|FLOW_OVER	+	|POP_DECAY_TFACTOR
−	|Computes a negative discharge, function of the water level, also known as spill flow	+	|Particulate Organic Phosphorus temperature influence factor in mineralization rate
−	|
−	|
	|		|
	|		|
		+	|1.08
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|I_CELL	+	|SILICA
−	|Line where the discharge is located. When defined, a grid-based discharged is assumed	+	|Compute Silica parameters
−	|
−	|
	|		|
	|		|
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|J_CELL	+	|TBCONST1
−	|Column where the discharge is located	+	|Bacteria: Constant to control temperature response curve shape
−	|
	|		|
	|		|
		+	|0.05
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|K_CELL	+	|TBCONST2
−	|Layer where the discharge is located	+	|Bacteria: Constant to control temperature response curve shape
−	|
	|		|
	|		|
		+	|0.98
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|NAME	+	|TBCONST3
−	|Discharge name	+	|Bacteria: Constant to control temperature response curve shape
−	|
	|		|
	|		|
		+	|0.98
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|NODE_ID	+	|TBCONST4
−	|ID of the discharge, when it isn't grid-based	+	|Bacteria: Constant to control temperature response curve shape
−	|
	|		|
	|		|
		+	|0.02
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|TIME_SERIE_COLUMN	+	|TBMAX
−	|This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series.	+	|Bacteria: Maximum temperature tolerable temperature for growth
−	|
	|		|
	|		|
		+	|35
		+	|°C
		+	|Real
		+	|-
		+	| Base 1
		+	|Benthos
		+	|TBMIN
		+	|Bacteria: Minimum temperature tolerable for growth
	|		|
	|		|
		+	|5
		+	|°C
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|U_COLUMN	+	|TBMAX
−	|This keyword is used to give to model the column where the velocity X is defined in the data base time series file	+	|Maximum optimal temperature for bacterial growth
−	|
−	|
−	|
	|		|
	|		|
		+	|25.1
		+	|°C
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|Benthos
−	|V_COLUMN	+	|TBMIN
−	|This keyword is used to give to model the column where the velocity Y is defined in the data base time series file	+	|Minimum optimal temperature for bacterial growth
−	|
−	|
−	|
	|		|
	|		|
		+	|24.8
		+	|°C
		+	|Real
		+	|}
		+
		+	=== Module CEQUALW2===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleCEQUALW2.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|CEQUALW2
−	|WEIR_COEF	+	|DTSECONDS
−	|Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).	+	|time step, in seconds, between two CEQUALW2 calls
	|		|
	|		|
Line 481:		Line 520:
	|-		|-
	| Base 1		| Base 1
−	|Discharges	+	|CEQUALW2
−	|WEIR_LENGTH	+	|NAME
−	|Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).	+	|Algae Property name as defined on Module GlobalData
	|		|
	|		|
Line 491:		Line 530:
	|}		|}
−	=== Module DrainageNetwork===	+	=== Module Discharges===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDrainageNetwork.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDischarges.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 506:		Line 545:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|ADVECTION_DIFUSION	+	|ALTERNATIVE_LOCATIONS
−	|Compute advection and diffusion of property	+	|Activates the automatic search for alternative locations, when the discharge point is not a covered point
		+	|0/1
		+	|Inactive/Active
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Base 1
		+	|Discharges
		+	|COORD_X
		+	|Longitude of the discharge in geographic coordinates
	|		|
	|		|
	|		|
	|		|
		+	|Real
	|-		|-
−	| rowspan="2" |Base 1	+	| Base 1
−	| rowspan="2" |DrainageNetwork	+	|Discharges
−	| rowspan="2" |ADVECTION_SCHEME	+	|COORD_Y
−	| rowspan="2" |Numerical Discretization of Advection.	+	|Activates the automatic search for alternative locations, when the discharge point is not a covered point
−	|1	+	|Latitude of the discharge in geographic coordinates
−	|UpwindOrder1 (Upwind scheme of 1st order)	+	|
−	| rowspan="2" |	+	|
−	| rowspan="2" |	+	|
−	| rowspan="2" |	+	|Real
−	|-
−	|5
−	|CentralDif (Central differences scheme)
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|CHECK_NODES	+	|CREST_HEIGTH
−	|Check nodes consistency in the drainage network file	+	|Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
	|		|
	|		|
Line 539:		Line 585:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|CHECK_REACHES	+	|DATA_BASE_FILE
−	|Check reaches consistency in the drainage network file (a reach connects 2 nodes)	+	|Definition of the data base time series file. If there is one, model assumes that the discharge is time variable
	|		|
	|		|
Line 549:		Line 595:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|CONTINUOUS	+	|DEFAULT_FLOW_VALUE
−	|Computations follow from another simulation	+	|Default flow value
	|		|
	|		|
Line 559:		Line 605:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|DATA_COLUMN	+	|DEFAULT_VELOCITY_VALUE
−	|Number of column in the time series file with the downstream water depth values	+	|Default velocity associated with the discharge. Important to compute momentum fluxes
	|		|
	|		|
Line 569:		Line 615:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|DEFAULT_VALUE	+	|DEFAULTVALUE
−	|Default value for water depth at the downstream boundary condition	+	|Water property value
	|		|
	|		|
Line 579:		Line 625:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|DEFAULT_VALUE	+	|DESCRIPTION
−	|Default value for this property. Also used as initial value.	+	|Discharge description
	|		|
	|		|
Line 589:		Line 635:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|DESCRIPTION	+	|DISCHARGE_UNIFORM
−	|Description of property	+	|
	|		|
	|		|
Line 599:		Line 645:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|DIFFUSION_SCHEME	+	|FLOW_COLUMN
−	|Numerical Discretization of Diffusion.	+	|Column where the flow is defined in the data base time series file
−	|5
−	|CentralDif (Central Differences discretization)
	|		|
	|		|
	|		|
−	|-
−	| Base 1
−	|DrainageNetwork
−	|DIFFUSIVITY
−	|Diffusivity of property
	|		|
	|		|
		+	|-
		+	| rowspan="3" |Base 1
		+	| rowspan="3" |Discharges
		+	| rowspan="3" |FLOW_DISTRIBUTION
		+	| rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation
		+	|by cell
	|		|
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|by water column
	|		|
		+	|-
		+	|by volume
	|		|
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|DISCHARGES	+	|FLOW_OVER
−	|Use module discharges	+	|Computes a negative discharge, function of the water level, also known as spill flow
	|		|
	|		|
Line 628:		Line 680:
	|		|
	|-		|-
−	| rowspan="5" |Base 1	+	| Base 1
−	| rowspan="5" |DrainageNetwork	+	|Discharges
−	| rowspan="5" |DOWNSTREAM_BOUNDARY	+	|IGNORE_ON
−	| rowspan="5" |Choose downstream boundary condition	+	|This keyword must be active for MOHID MPI runs
		+	|0/1
		+	|Inactive/Active
	|0		|0
−	|Dam (flow at the outlet = 0.0)	+	|
−	| rowspan="5" |	+	|Boolean
−	| rowspan="5" |
−	| rowspan="5" |
	|-		|-
−	|1	+	| Base 1
−	|Normal (solves KynematicWave at the outlet)	+	|Discharges
		+	|I_CELL
		+	|Line where the discharge is located. When defined, a grid-based discharged is assumed
		+	|
		+	|
		+	|
		+	|
		+	|Integer
	|-		|-
−	|2	+	| Base 1
−	|ImposedWaterDepth	+	|Discharges
−	|-	+	|J_CELL
−	|3	+	|Column where the discharge is located
−	|ImposedWaterLevel	+	|
−	|-	+	|
−	|4	+	|
−	|ImposedVelocity	+	|
−	|-	+	|Integer
−	| rowspan="2" |Base 1
−	| rowspan="2" |DrainageNetwork
−	| rowspan="2" |FILE_IN_TIME
−	| rowspan="2" |Downstream boundary condition evolution
−	|NONE
−	|Constant evolution of downstream boundary condition (constant water depth)
−	| rowspan="2" |
−	| rowspan="2" |
−	| rowspan="2" |
−	|-
−	|TIMESERIE
−	|Reads a time series with water depth for downstream boundary condition
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|FILENAME	+	|K_CELL
−	|Path to the file with the downstream water depth time serie values	+	|Layer where the discharge is located
−	|
	|		|
	|		|
	|		|
	|		|
		+	|Integer
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|GLOBAL_MANNING	+	|NAME
−	|Assigns a Manning rugosity coefficient to all the drainage network channels	+	|Discharge name
	|		|
	|		|
Line 683:		Line 730:
	|		|
	|-		|-
−	| rowspan="3" |Base 1	+	| Base 1
−	| rowspan="3" |DrainageNetwork	+	|Discharges
−	| rowspan="3" |HYDRODYNAMIC_APROX	+	|NODE_ID
−	| rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation	+	|ID of the discharge, when it isn't grid-based
−	|1
−	|KinematicWave (friction = slope gradient)
−	| rowspan="3" |
−	| rowspan="3" |
−	| rowspan="3" |
−	|-
−	|2
−	|DiffusionWave (full St Venant equation except for advection)
−	|-
−	|3
−	|DynamicWave (full St Venant equation)
−	|-
−	| Base 1
−	|DrainageNetwork
−	|INITIAL_WATER_DEPTH
−	|Assigns an initial water depth to all channels. only if continuous computation is not chosen.
	|		|
	|		|
Line 710:		Line 741:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|INITIALIZATION_METHOD	+	|TIME_SERIE_COLUMN
−	|Choose initialization method for this property.	+	|This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series.
−	|CONSTANT	+	|
−	|Constant initialization of property	+	|
	|		|
	|		|
Line 720:		Line 751:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|MIN_VALUE	+	|U_COLUMN
−	|Minimum concentration of property.	+	|This keyword is used to give to model the column where the velocity X is defined in the data base time series file
	|		|
	|		|
Line 730:		Line 761:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|MIN_WATER_DEPTH	+	|V_COLUMN
−	|Minimum water column for computations	+	|This keyword is used to give to model the column where the velocity Y is defined in the data base time series file
	|		|
	|		|
Line 738:		Line 769:
	|		|
	|		|
		+	|-
		+	| rowspan="5" |Base 1
		+	| rowspan="5" |Discharges
		+	| rowspan="5" |VERTICAL_DISCHARGE
		+	| rowspan="5" |Serves to specify the discharge distribution in the vertical direction
		+	|1
		+	|discharge in the bottom cell
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	|-
		+	|2
		+	|discharge in the surface cell
		+	|-
		+	|3
		+	|discharge in the cell that intersects the depth defined in the keyword K_DEPTH (no default value)
		+	|-
		+	|4
		+	|discharge in the layer defined in the keyword K_CELL (no default value)
		+	|-
		+	|5
		+	|Assumes a uniform distribution along the entire water column
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|NAME	+	|WEIR_COEF
−	|Name of property	+	|Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
	|		|
	|		|
Line 750:		Line 803:
	|-		|-
	| Base 1		| Base 1
−	|DrainageNetwork	+	|Discharges
−	|NETWORK_FILE	+	|WEIR_LENGTH
−	|Path to the file that describes nodes and reaches	+	|Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Base 1
−	|DrainageNetwork
−	|TIME_SERIE
−	|Output of property values in time series files.
	|		|
	|		|
Line 768:		Line 811:
	|		|
	|		|
		+	|}
		+
		+	=== Module DrainageNetwork===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDrainageNetwork.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Base 1	+	! scope="col" |Project
−	|DrainageNetwork	+	! scope="col" |Module
−	|TIME_SERIE_LOCATION	+	! scope="col" |Keyword
−	|Path to the file that has the time series location characteristics	+	! scope="col" |Keyword description
−	|	+	! scope="col" |Options
−	|	+	! scope="col" |Option description
−	|	+	! scope="col" |Default Value
−	|	+	! scope="col" |Units
−	|	+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
	|DrainageNetwork		|DrainageNetwork
−	|UNITS	+	|ADVECTION_DIFUSION
−	|Units of property	+	|Compute advection and diffusion of property
	|		|
	|		|
Line 791:		Line 839:
	| rowspan="2" |Base 1		| rowspan="2" |Base 1
	| rowspan="2" |DrainageNetwork		| rowspan="2" |DrainageNetwork
−	| rowspan="2" |XS_CALC	+	| rowspan="2" |ADVECTION_SCHEME
−	| rowspan="2" |Method to compute trapezoidal cross section	+	| rowspan="2" |Numerical Discretization of Advection.
	|1		|1
−	|Analytic	+	|UpwindOrder1 (Upwind scheme of 1st order)
	| rowspan="2" |		| rowspan="2" |
	| rowspan="2" |		| rowspan="2" |
	| rowspan="2" |		| rowspan="2" |
	|-		|-
−	|2	+	|5
−	|Discretization dH	+	|CentralDif (Central differences scheme)
−	|}
−
−	=== Module Life===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLife.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|AFFINITY_NH4	+	|CHECK_NODES
−	|Affinity for NH4 uptake	+	|Check nodes consistency in the drainage network file
	|		|
	|		|
Line 828:		Line 861:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|AFFINITY_NO3	+	|CHECK_REACHES
−	|Affinity for NO3 uptake	+	|Check reaches consistency in the drainage network file (a reach connects 2 nodes)
	|		|
	|		|
Line 838:		Line 871:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|AFFINITY_PO4	+	|CONTINUOUS
−	|Affinity for PO4 uptake	+	|Computations follow from another simulation
	|		|
	|		|
Line 848:		Line 881:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|ALPHA_CHL	+	|DATA_COLUMN
−	|Chl specific initial slop of P vs I curve	+	|Number of column in the time series file with the downstream water depth values
	|		|
	|		|
Line 858:		Line 891:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|ASS_EFFIC	+	|DEFAULT_VALUE
−	|Assimilation efficiency	+	|Default value for water depth at the downstream boundary condition
	|		|
	|		|
Line 868:		Line 901:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|ASS_EFFIC_LOW_O2	+	|DEFAULT_VALUE
−	|Assimilation efficiency @ low O2	+	|Default value for this property. Also used as initial value.
	|		|
	|		|
Line 878:		Line 911:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|ASSIMIL_EFFIC	+	|DESCRIPTION
−	|Assimilation efficiency	+	|Description of property
	|		|
	|		|
Line 888:		Line 921:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|BIO_SI_DISS	+	|DIFFUSION_SCHEME
−	|Biogenic silica dissolution rate	+	|Numerical Discretization of Diffusion.
−	|	+	|5
−	|	+	|CentralDif (Central Differences discretization)
	|		|
	|		|
Line 898:		Line 931:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|CHL_DEGRAD_RATE	+	|DIFFUSIVITY
−	|Chla degradation rate constant	+	|Diffusivity of property
	|		|
	|		|
Line 908:		Line 941:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|DENS_DEP_MORT	+	|DISCHARGES
−	|Density-dependence mortality rate	+	|Use module discharges
	|		|
	|		|
Line 917:		Line 950:
	|		|
	|-		|-
−	| Base 1	+	| rowspan="5" |Base 1
−	|Life	+	| rowspan="5" |DrainageNetwork
−	|DOM_UP_KS	+	| rowspan="5" |DOWNSTREAM_BOUNDARY
−	|Half saturation value for DOM uptake	+	| rowspan="5" |Choose downstream boundary condition
−	|	+	|0
−	|	+	|Dam (flow at the outlet = 0.0)
−	|	+	| rowspan="5" |
−	|	+	| rowspan="5" |
−	|	+	| rowspan="5" |
	|-		|-
−	| Base 1	+	|1
−	|Life	+	|Normal (solves KynematicWave at the outlet)
−	|DOMSL_BAC_KS	+	|-
−	|Bacteria mediated DOMsl Hydrolysis	+	|2
−	|	+	|ImposedWaterDepth
−	|	+	|-
−	|	+	|3
−	|	+	|ImposedWaterLevel
−	|	+	|-
		+	|4
		+	|ImposedVelocity
		+	|-
		+	| rowspan="2" |Base 1
		+	| rowspan="2" |DrainageNetwork
		+	| rowspan="2" |FILE_IN_TIME
		+	| rowspan="2" |Downstream boundary condition evolution
		+	|NONE
		+	|Constant evolution of downstream boundary condition (constant water depth)
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|TIMESERIE
		+	|Reads a time series with water depth for downstream boundary condition
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|DOMSL_BAC_VMAX	+	|FILENAME
−	|Vmax for DOMsl Hydrolysis	+	|Path to the file with the downstream water depth time serie values
	|		|
	|		|
Line 948:		Line 996:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|EXC_DOM_SL_FRAC	+	|GLOBAL_MANNING
−	|DOM diverted to semi-labile pool	+	|Assigns a Manning rugosity coefficient to all the drainage network channels
	|		|
	|		|
Line 956:		Line 1,004:
	|		|
	|		|
		+	|-
		+	| rowspan="3" |Base 1
		+	| rowspan="3" |DrainageNetwork
		+	| rowspan="3" |HYDRODYNAMIC_APROX
		+	| rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation
		+	|1
		+	|KinematicWave (friction = slope gradient)
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|2
		+	|DiffusionWave (full St Venant equation except for advection)
		+	|-
		+	|3
		+	|DynamicWave (full St Venant equation)
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|EXCRE_UP_FRAC	+	|INITIAL_WATER_DEPTH
−	|Excreted fraction of uptake	+	|Assigns an initial water depth to all channels. only if continuous computation is not chosen.
	|		|
	|		|
Line 968:		Line 1,032:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|EXU_NUT_STRESS	+	|INITIALIZATION_METHOD
−	|Exudation under nutrient stress	+	|Choose initialization method for this property.
−	|	+	|CONSTANT
−	|	+	|Constant initialization of property
	|		|
	|		|
Line 978:		Line 1,042:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|GRAZ_AVAIL	+	|LIMIT_DT_COURANT
−	|Availability of Prey X	+	|Connect/disconnect limitation of dt by courant number
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|	+	|0
−	|
	|		|
		+	|Boolean
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|GRAZ_UP_KS	+	|MIN_VALUE
−	|Half saturation value for uptake	+	|Minimum concentration of property.
	|		|
	|		|
Line 998:		Line 1,062:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|LIGHT_LIM_METHOD	+	|MIN_WATER_DEPTH
−	|Light limitation method	+	|Minimum water column for computations
	|		|
	|		|
Line 1,008:		Line 1,072:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|LYS_REF_CON	+	|NAME
−	|Lysis_Ref_Con	+	|Name of property
	|		|
	|		|
Line 1,018:		Line 1,082:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|MASS_XEK	+	|NETWORK_FILE
−	|Command to make a mass conservation test	+	|Path to the file that describes nodes and reaches
	|		|
	|		|
Line 1,028:		Line 1,092:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|MAX_ASSIMIL	+	|TIME_SERIE
−	|Maximal assimilation rate	+	|Output of property values in time series files.
	|		|
	|		|
Line 1,038:		Line 1,102:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|MAX_CHLN_RATIO	+	|TIME_SERIE_LOCATION
−	|Maximal Chl:N ratio	+	|Path to the file that has the time series location characteristics
	|		|
	|		|
Line 1,048:		Line 1,112:
	|-		|-
	| Base 1		| Base 1
−	|Life	+	|DrainageNetwork
−	|MAX_NC_RATIO	+	|UNITS
−	|Maximal N:C ratio	+	|Units of property
	|		|
	|		|
Line 1,057:		Line 1,121:
	|		|
	|-		|-
−	| Base 1	+	| rowspan="2" |Base 1
−	|Life	+	| rowspan="2" |DrainageNetwork
−	|MAX_PC_RATIO	+	| rowspan="2" |XS_CALC
−	|Maximal P:C ratio	+	| rowspan="2" |Method to compute trapezoidal cross section
−	|	+	|1
−	|	+	|Analytic
−	|	+	| rowspan="2" |
−	|	+	| rowspan="2" |
−	|	+	| rowspan="2" |
		+	|-
		+	|2
		+	|Discretization dH
		+	|}
		+
		+	=== Module Life===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLife.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
	|Life		|Life
−	|MAX_SPEC_UP_@10C	+	|AFFINITY_NH4
−	|Maximum specific uptake @ 10ºC	+	|Affinity for NH4 uptake
	|		|
	|		|
Line 1,079:		Line 1,161:
	| Base 1		| Base 1
	|Life		|Life
−	|MAX_STORE_FILL	+	|AFFINITY_NO3
−	|Maximal rate of storage filling	+	|Affinity for NO3 uptake
	|		|
	|		|
Line 1,089:		Line 1,171:
	| Base 1		| Base 1
	|Life		|Life
−	|MIN_LYSIS	+	|AFFINITY_PO4
−	|Minimal lysis rate	+	|Affinity for PO4 uptake
	|		|
	|		|
Line 1,099:		Line 1,181:
	| Base 1		| Base 1
	|Life		|Life
−	|MIN_NC_RATIO	+	|ALPHA_CHL
−	|Minimal N:C ratio	+	|Chl specific initial slop of P vs I curve
	|		|
	|		|
Line 1,109:		Line 1,191:
	| Base 1		| Base 1
	|Life		|Life
−	|MIN_PC_RATIO	+	|ASS_EFFIC
−	|Minimal P:C ratio	+	|Assimilation efficiency
	|		|
	|		|
Line 1,119:		Line 1,201:
	| Base 1		| Base 1
	|Life		|Life
−	|MIXOTROPHY	+	|ASS_EFFIC_LOW_O2
−	|Hability to perform mixotrophy	+	|Assimilation efficiency @ low O2
	|		|
	|		|
Line 1,129:		Line 1,211:
	| Base 1		| Base 1
	|Life		|Life
−	|MORT_DOM_SL_FRAC	+	|ASSIMIL_EFFIC
−	|DOC_SL_Frac	+	|Assimilation efficiency
	|		|
	|		|
Line 1,139:		Line 1,221:
	| Base 1		| Base 1
	|Life		|Life
−	|MORT_O2_DEP	+	|BIO_SI_DISS
−	|Oxygen-dependent mortality rate	+	|Biogenic silica dissolution rate
	|		|
	|		|
Line 1,149:		Line 1,231:
	| Base 1		| Base 1
	|Life		|Life
−	|MORT_POM_FRAC	+	|CHL_DEGRAD_RATE
−	|Fraction of mortality to POM	+	|Chla degradation rate constant
	|		|
	|		|
Line 1,159:		Line 1,241:
	| Base 1		| Base 1
	|Life		|Life
−	|MORT_RATE	+	|DENS_DEP_MORT
−	|Temperature-independent mortality rate	+	|Density-dependence mortality rate
	|		|
	|		|
Line 1,169:		Line 1,251:
	| Base 1		| Base 1
	|Life		|Life
−	|NH4_Ks	+	|DOM_UP_KS
−	|PO4 uptake affinity	+	|Half saturation value for DOM uptake
	|		|
	|		|
Line 1,179:		Line 1,261:
	| Base 1		| Base 1
	|Life		|Life
−	|NIT_IN_COEF	+	|DOMSL_BAC_KS
−	|Nitrification inhibition coefficient	+	|Bacteria mediated DOMsl Hydrolysis
	|		|
	|		|
Line 1,189:		Line 1,271:
	| Base 1		| Base 1
	|Life		|Life
−	|NIT_O_N_CONV	+	|DOMSL_BAC_VMAX
−	|Nitrification O:N consumption ratio	+	|Vmax for DOMsl Hydrolysis
	|		|
	|		|
Line 1,199:		Line 1,281:
	| Base 1		| Base 1
	|Life		|Life
−	|NITRIFRADLIM	+	|EXC_DOM_SL_FRAC
−	|Light radiation bellow which nitrification occurs	+	|DOM diverted to semi-labile pool
	|		|
	|		|
Line 1,209:		Line 1,291:
	| Base 1		| Base 1
	|Life		|Life
−	|NITRIFRATE	+	|EXCRE_UP_FRAC
−	|Nitrification rate	+	|Excreted fraction of uptake
	|		|
	|		|
Line 1,219:		Line 1,301:
	| Base 1		| Base 1
	|Life		|Life
−	|NO3_Ks	+	|EXU_NUT_STRESS
−	|NO3 uptake affinity	+	|Exudation under nutrient stress
	|		|
	|		|
Line 1,229:		Line 1,311:
	| Base 1		| Base 1
	|Life		|Life
−	|NUT_STRESS_TRESHOLD	+	|GRAZ_AVAIL
−	|Nutrient stress threshold (sedimentation)	+	|Availability of Prey X
	|		|
	|		|
Line 1,239:		Line 1,321:
	| Base 1		| Base 1
	|Life		|Life
−	|O2_CARB_CONVERS	+	|GRAZ_UP_KS
−	|Oxygen to carbon conversion factor	+	|Half saturation value for uptake
	|		|
	|		|
Line 1,249:		Line 1,331:
	| Base 1		| Base 1
	|Life		|Life
−	|O2_KS	+	|LIGHT_LIM_METHOD
−	|Oxygen half saturation constant	+	|Light limitation method
	|		|
	|		|
Line 1,259:		Line 1,341:
	| Base 1		| Base 1
	|Life		|Life
−	|O2_LOW_ASS_EFIC	+	|LYS_REF_CON
−	|Oxygen concentration bollow which ass efic is low	+	|Lysis_Ref_Con
	|		|
	|		|
Line 1,269:		Line 1,351:
	| Base 1		| Base 1
	|Life		|Life
−	|PHOTOINHIBITION	+	|MASS_XEK
−	|Photoinhibition	+	|Command to make a mass conservation test
	|		|
	|		|
Line 1,279:		Line 1,361:
	| Base 1		| Base 1
	|Life		|Life
−	|PO4_Ks	+	|MAX_ASSIMIL
−	|PO4 uptake affinity	+	|Maximal assimilation rate
	|		|
	|		|
Line 1,289:		Line 1,371:
	| Base 1		| Base 1
	|Life		|Life
−	|POM_BAC_KS	+	|MAX_CHLN_RATIO
−	|Bacteria mediated POM Hydrolysis MM constant	+	|Maximal Chl:N ratio
	|		|
	|		|
Line 1,299:		Line 1,381:
	| Base 1		| Base 1
	|Life		|Life
−	|POM_BAC_VMAX	+	|MAX_NC_RATIO
−	|Vmax for POM Hydrolysis	+	|Maximal N:C ratio
	|		|
	|		|
Line 1,309:		Line 1,391:
	| Base 1		| Base 1
	|Life		|Life
−	|Q10_VALUE	+	|MAX_PC_RATIO
−	|Q10 value for temperature limitation	+	|Maximal P:C ratio
	|		|
	|		|
Line 1,319:		Line 1,401:
	| Base 1		| Base 1
	|Life		|Life
−	|REDFIELD_NC	+	|MAX_SPEC_UP_@10C
−	|Redfield N:C ratio	+	|Maximum specific uptake @ 10ºC
	|		|
	|		|
Line 1,329:		Line 1,411:
	| Base 1		| Base 1
	|Life		|Life
−	|REDFIELD_PC	+	|MAX_STORE_FILL
−	|Redfield P:C ratio	+	|Maximal rate of storage filling
	|		|
	|		|
Line 1,339:		Line 1,421:
	| Base 1		| Base 1
	|Life		|Life
−	|REDFIELD_SiC	+	|MIN_LYSIS
−	|Standard Si:C ratio	+	|Minimal lysis rate
	|		|
	|		|
Line 1,349:		Line 1,431:
	| Base 1		| Base 1
	|Life		|Life
−	|REF_TEMP	+	|MIN_NC_RATIO
−	|Reference temperature	+	|Minimal N:C ratio
	|		|
	|		|
Line 1,359:		Line 1,441:
	| Base 1		| Base 1
	|Life		|Life
−	|REF_TEMP_Q10	+	|MIN_PC_RATIO
−	|Reference temperature for Q10 method	+	|Minimal P:C ratio
	|		|
	|		|
Line 1,369:		Line 1,451:
	| Base 1		| Base 1
	|Life		|Life
−	|REL_EXCESS_SI	+	|MIXOTROPHY
−	|Release rate of excess silicate	+	|Hability to perform mixotrophy
	|		|
	|		|
Line 1,379:		Line 1,461:
	| Base 1		| Base 1
	|Life		|Life
−	|RESP_BASAL	+	|MORT_DOM_SL_FRAC
−	|Basal respiration rate	+	|DOC_SL_Frac
	|		|
	|		|
Line 1,389:		Line 1,471:
	| Base 1		| Base 1
	|Life		|Life
−	|RESP_FRAC_PROD	+	|MORT_O2_DEP
−	|Respired fraction of production	+	|Oxygen-dependent mortality rate
	|		|
	|		|
Line 1,399:		Line 1,481:
	| Base 1		| Base 1
	|Life		|Life
−	|REST_RESP_@10C	+	|MORT_POM_FRAC
−	|Rest respiration @ 10ºC	+	|Fraction of mortality to POM
	|		|
	|		|
Line 1,409:		Line 1,491:
	| Base 1		| Base 1
	|Life		|Life
−	|SED_MIN	+	|MORT_RATE
−	|Minimal sedimentation rate	+	|Temperature-independent mortality rate
	|		|
	|		|
Line 1,419:		Line 1,501:
	| Base 1		| Base 1
	|Life		|Life
−	|SED_NUT_STRESS	+	|NH4_Ks
−	|Nutrient stress sedimentation rate	+	|PO4 uptake affinity
	|		|
	|		|
Line 1,429:		Line 1,511:
	| Base 1		| Base 1
	|Life		|Life
−	|SEDIM_MIN	+	|NIT_IN_COEF
−	|Minimal sedimentation rate	+	|Nitrification inhibition coefficient
	|		|
	|		|
Line 1,439:		Line 1,521:
	| Base 1		| Base 1
	|Life		|Life
−	|SEDIM_NUT_STRESS	+	|NIT_O_N_CONV
−	|Nutrient stress threshold (sedimentation)	+	|Nitrification O:N consumption ratio
	|		|
	|		|
Line 1,449:		Line 1,531:
	| Base 1		| Base 1
	|Life		|Life
−	|SI_UPTAKE_KS	+	|NITRIFRADLIM
−	|Silicate uptake Michaelis constant	+	|Light radiation bellow which nitrification occurs
	|		|
	|		|
Line 1,459:		Line 1,541:
	| Base 1		| Base 1
	|Life		|Life
−	|SILICA_USE	+	|NITRIFRATE
−	|Set Silica use by the producer	+	|Nitrification rate
	|		|
	|		|
Line 1,469:		Line 1,551:
	| Base 1		| Base 1
	|Life		|Life
−	|TEMP_LIM_METHOD	+	|NO3_Ks
−	|Temperature limitation method	+	|NO3 uptake affinity
	|		|
	|		|
Line 1,476:		Line 1,558:
	|		|
	|		|
−	|}
−
−	=== Module LightExtinction===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLightExtinction.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|Life
−	! scope="col" |Keyword	+	|NUT_STRESS_TRESHOLD
−	! scope="col" |Keyword description	+	|Nutrient stress threshold (sedimentation)
−	! scope="col" |Options	+	|
−	! scope="col" |Option description	+	|
−	! scope="col" |Default Value	+	|
−	! scope="col" |Units	+	|
−	! scope="col" |Type	+	|
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|LW_EXTINCTION_COEF	+	|O2_CARB_CONVERS
−	|Long-wave extinction coeficient	+	|Oxygen to carbon conversion factor
		+	|
	|		|
	|		|
−	|0.333
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|LW_EXTINCTION_COLUMN	+	|O2_KS
−	|	+	|Oxygen half saturation constant
	|		|
	|		|
Line 1,512:		Line 1,589:
	|		|
	|-		|-
−	| rowspan="2" |Base 1	+	| Base 1
−	| rowspan="2" |LightExtinction	+	|Life
−	| rowspan="2" |LW_EXTINCTION_TYPE	+	|O2_LOW_ASS_EFIC
−	| rowspan="2" |The method used in light extinction estimate	+	|Oxygen concentration bollow which ass efic is low
−	|1
−	|Constant
−	| rowspan="2" |1
−	| rowspan="2" |
−	| rowspan="2" |
−	|-
−	|5
−	|Ascii file
−	|-
−	| Base 1
−	|LightExtinction
−	|LW_PERCENTAGE
	|		|
	|		|
	|		|
−	|0.4
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|SW_EXTINCTION_COEF	+	|PHOTOINHIBITION
−	|Short-wave extinction coeficient	+	|Photoinhibition
		+	|
	|		|
	|		|
−	|0.05
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|SW_EXTINCTION_COLUMN	+	|PO4_Ks
−	|	+	|PO4 uptake affinity
	|		|
	|		|
Line 1,554:		Line 1,618:
	|		|
	|		|
−	|-
−	| rowspan="6" |Base 1
−	| rowspan="6" |LightExtinction
−	| rowspan="6" |SW_EXTINCTION_TYPE
−	| rowspan="6" |The method used in light extinction estimate
−	|1
−	|Constant
−	| rowspan="6" |1
−	| rowspan="6" |
−	| rowspan="6" |
−	|-
−	|2
−	|Parsons Ocean
−	|-
−	|3
−	|Portela-Tagus Estuary
−	|-
−	|4
−	|Combined Parsons-Portela
−	|-
−	|5
−	|Ascii file
−	|-
−	|6
−	|Multiparameter
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|SW_KW	+	|POM_BAC_KS
−	|Short wave absorption coefficient	+	|Bacteria mediated POM Hydrolysis MM constant
	|		|
	|		|
Line 1,591:		Line 1,630:
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|SW_LW_EXTINCTION_FILE	+	|POM_BAC_VMAX
−	|	+	|Vmax for POM Hydrolysis
	|		|
	|		|
Line 1,601:		Line 1,640:
	|-		|-
	| Base 1		| Base 1
−	|LightExtinction	+	|Life
−	|SW_PERCENTAGE	+	|Q10_VALUE
		+	|Q10 value for temperature limitation
	|		|
	|		|
	|		|
−	|0.6
	|		|
	|		|
−	|}
−
−	=== Module MacroAlgae===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleMacroAlgae.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|BEACHED_MORT_RATE	+	|REDFIELD_NC
−	|Beached drifting macroalgae mortality rate	+	|Redfield N:C ratio
	|		|
	|		|
Line 1,636:		Line 1,660:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|DEPLIM	+	|REDFIELD_PC
−	|Maximum SPM deposition flux allowed for macroalgae to grow	+	|Redfield P:C ratio
	|		|
	|		|
Line 1,646:		Line 1,670:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|DISSDON	+	|REDFIELD_SiC
−	|fraction of dissolved organic material excreted by macroalgae	+	|Standard Si:C ratio
	|		|
	|		|
Line 1,656:		Line 1,680:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|DT	+	|REF_TEMP
−	|Time step compute macroalgae biogeochemical processes	+	|Reference temperature
	|		|
	|		|
Line 1,666:		Line 1,690:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|ENDREPC	+	|REF_TEMP_Q10
−	|Macroalgae endogenous respiration rate	+	|Reference temperature for Q10 method
	|		|
	|		|
Line 1,676:		Line 1,700:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|EROCRITSS	+	|REL_EXCESS_SI
−	|Critical shear stress for macroalgae detachment to occur	+	|Release rate of excess silicate
	|		|
	|		|
Line 1,686:		Line 1,710:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|EXCRCONS	+	|RESP_BASAL
−	|Macroalgae excretion rate	+	|Basal respiration rate
	|		|
	|		|
Line 1,696:		Line 1,720:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|GRAZCONS	+	|RESP_FRAC_PROD
−	|Grazing rate over macroalgae	+	|Respired fraction of production
	|		|
	|		|
Line 1,706:		Line 1,730:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|GROWMAX	+	|REST_RESP_@10C
−	|macroalgae maximum growth rate	+	|Rest respiration @ 10ºC
	|		|
	|		|
Line 1,716:		Line 1,740:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|MACROALGAE_MINCONC	+	|SED_MIN
−	|Minimum residual value for macroalgae abundance	+	|Minimal sedimentation rate
	|		|
	|		|
Line 1,726:		Line 1,750:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|MIN_OXYGEN	+	|SED_NUT_STRESS
−	|Minimum oxygen concentration for macroalgae growth	+	|Nutrient stress sedimentation rate
	|		|
	|		|
Line 1,736:		Line 1,760:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|MORTCON	+	|SEDIM_MIN
−	|Macroalgae mortality half saturation constant	+	|Minimal sedimentation rate
	|		|
	|		|
Line 1,746:		Line 1,770:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|MORTMAX	+	|SEDIM_NUT_STRESS
−	|Macroalgae natural mortality rate	+	|Nutrient stress threshold (sedimentation)
	|		|
	|		|
Line 1,756:		Line 1,780:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|NITROGEN	+	|SI_UPTAKE_KS
−	|Defines if the user wishes to compute the nitrogen cycle	+	|Silicate uptake Michaelis constant
	|		|
	|		|
Line 1,766:		Line 1,790:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|NSATCONS	+	|SILICA_USE
−	|nitrogen half-saturation constant for macroalgae	+	|Set Silica use by the producer
	|		|
	|		|
Line 1,776:		Line 1,800:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|Life
−	|PELAGIC_MODEL	+	|TEMP_LIM_METHOD
−	|Pelagic biogeochemical module coupled	+	|Temperature limitation method
	|		|
	|		|
Line 1,784:		Line 1,808:
	|		|
	|		|
		+	|}
		+
		+	=== Module LightExtinction===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLightExtinction.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|PHOSPHORUS	+	|COEF_PARSONS_PORTELA
−	|Defines if the user wishes to compute the phosphorus cycle	+	|Correct Default Coefficient for Parsons Portela SW Radiation parameterisation
−	|	+	|Needs SW_EXTINCTION_TYPE: 4
−	|
−	|
	|		|
		+	|0.04
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|PHOTOIN	+	|LW_EXTINCTION_COEF
−	|macroalgae optimum radiation value	+	|Long-wave extinction coeficient
−	|
	|		|
	|		|
		+	|0.333
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|PHOTORES	+	|LW_EXTINCTION_COLUMN
−	|Macroalgae photorespiration rate	+	|
	|		|
	|		|
Line 1,814:		Line 1,853:
	|		|
	|		|
		+	|-
		+	| rowspan="2" |Base 1
		+	| rowspan="2" |LightExtinction
		+	| rowspan="2" |LW_EXTINCTION_TYPE
		+	| rowspan="2" |The method used in light extinction estimate
		+	|1
		+	|Constant
		+	| rowspan="2" |1
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|5
		+	|Ascii file
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|PSATCONS	+	|LW_PERCENTAGE
−	|phosphorus half-saturation constant for macroalgae
	|		|
	|		|
	|		|
		+	|0.4
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|RATIONC	+	|SW_EXTINCTION_COEF
−	|Macroalgae nitrogen/carbon ratio	+	|Short-wave extinction coeficient
−	|
−	|
	|		|
	|		|
		+	|0.05
	|		|
		+	|Real
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|RATIOPC	+	|SW_EXTINCTION_COLUMN
−	|Macroalgae phosphorus/carbon ratio	+	|
	|		|
	|		|
Line 1,844:		Line 1,896:
	|		|
	|		|
		+	|-
		+	| rowspan="6" |Base 1
		+	| rowspan="6" |LightExtinction
		+	| rowspan="6" |SW_EXTINCTION_TYPE
		+	| rowspan="6" |The method used in light extinction estimate
		+	|1
		+	|Constant
		+	| rowspan="6" |1
		+	| rowspan="6" |
		+	| rowspan="6" |
		+	|-
		+	|2
		+	|Parsons Ocean
		+	|-
		+	|3
		+	|Portela-Tagus Estuary
		+	|-
		+	|4
		+	|Combined Parsons-Portela
		+	|-
		+	|5
		+	|Ascii file
		+	|-
		+	|6
		+	|Multiparameter
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|SALT_EFFECT	+	|SW_KW
−	|Include salinity limitation on macroalgae growth	+	|Short wave absorption coefficient
	|		|
	|		|
Line 1,856:		Line 1,933:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|SALTCRIT	+	|SW_LW_EXTINCTION_FILE
−	|Macroalgae critical salinity limit growth	+	|
	|		|
	|		|
Line 1,866:		Line 1,943:
	|-		|-
	| Base 1		| Base 1
−	|MacroAlgae	+	|LightExtinction
−	|SALTMAX	+	|SW_PERCENTAGE
−	|Macroalgae maximum salinity for growth
	|		|
	|		|
	|		|
		+	|0.6
	|		|
	|		|
		+	|}
		+
		+	=== Module MacroAlgae===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleMacroAlgae.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|SALTMIN	+	|BEACHED_MORT_RATE
−	|Macroalgae minimum salinity for growth	+	|Beached drifting macroalgae mortality rate
	|		|
	|		|
Line 1,887:		Line 1,979:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|SALTOPT	+	|DEPLIM
−	|Macroalgae optimum salinity for growth	+	|Maximum SPM deposition flux allowed for macroalgae to grow
	|		|
	|		|
Line 1,897:		Line 1,989:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|SOLEXCR	+	|DISSDON
−	|Fraction of soluble inorganic material excreted by macroalgae	+	|fraction of dissolved organic material excreted by macroalgae
	|		|
	|		|
Line 1,907:		Line 1,999:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TCONST1	+	|DT
−	|Constant to control temperature response curve shape	+	|Time step compute macroalgae biogeochemical processes
	|		|
	|		|
Line 1,917:		Line 2,009:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TCONST2	+	|ENDREPC
−	|Constant to control temperature response curve shape	+	|Macroalgae endogenous respiration rate
	|		|
	|		|
Line 1,927:		Line 2,019:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TCONST3	+	|EROCRITSS
−	|Constant to control temperature response curve shape	+	|Critical shear stress for macroalgae detachment to occur
	|		|
	|		|
Line 1,937:		Line 2,029:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TCONST4	+	|EXCRCONS
−	|Constant to control temperature response curve shape	+	|Macroalgae excretion rate
	|		|
	|		|
Line 1,947:		Line 2,039:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TMIN	+	|GRAZCONS
−	|Macroalgae minimum temperature for growth	+	|Grazing rate over macroalgae
	|		|
	|		|
Line 1,957:		Line 2,049:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TOPTMAX	+	|GROWMAX
−	|Macroalgae optimum maximum temperature for growth	+	|macroalgae maximum growth rate
	|		|
	|		|
Line 1,967:		Line 2,059:
	| Base 1		| Base 1
	|MacroAlgae		|MacroAlgae
−	|TOPTMIN	+	|MACROALGAE_MINCONC
−	|Macroalgae optimum minimum temperature for growth	+	|Minimum residual value for macroalgae abundance
	|		|
	|		|
Line 1,974:		Line 2,066:
	|		|
	|		|
−	|}
−
−	=== Module Profile===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleProfile.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|MacroAlgae
−	! scope="col" |Keyword	+	|MIN_OXYGEN
−	! scope="col" |Keyword description	+	|Minimum oxygen concentration for macroalgae growth
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 1
−	|Profile
−	|DT_OUTPUT_TIME
−	|Time step to perform profile outputs in HDF5
	|		|
	|		|
Line 2,001:		Line 2,078:
	|-		|-
	| Base 1		| Base 1
−	|Profile	+	|MacroAlgae
−	|LOCALIZATION_I	+	|MORTCON
−	|Grid cell index I where to perform profile output	+	|Macroalgae mortality half saturation constant
	|		|
	|		|
Line 2,011:		Line 2,088:
	|-		|-
	| Base 1		| Base 1
−	|Profile	+	|MacroAlgae
−	|LOCALIZATION_J	+	|MORTMAX
−	|Grid cell index J where to perform profile output	+	|Macroalgae natural mortality rate
	|		|
	|		|
Line 2,021:		Line 2,098:
	|-		|-
	| Base 1		| Base 1
−	|Profile	+	|MacroAlgae
−	|NAME	+	|NITROGEN
−	|Name of profile output	+	|Defines if the user wishes to compute the nitrogen cycle
	|		|
	|		|
Line 2,029:		Line 2,106:
	|		|
	|		|
−	|}
−
−	=== Module SedimentQuality===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleSedimentQuality.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|NSATCONS
−	|Coefficient for labile OM decay rate	+	|nitrogen half-saturation constant for macroalgae
	|		|
	|		|
Line 2,056:		Line 2,118:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|PELAGIC_MODEL
−	|Acoef for Heterotrophs decay rate	+	|Pelagic biogeochemical module coupled
	|		|
	|		|
Line 2,066:		Line 2,128:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|PHOSPHORUS
−	|Acoef for Autotrophs C specific decay (death) Rate	+	|Defines if the user wishes to compute the phosphorus cycle
	|		|
	|		|
Line 2,076:		Line 2,138:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|PHOTOIN
−	|Acoef for the Anaerobic C specific decay (death) Rate	+	|macroalgae optimum radiation value
	|		|
	|		|
Line 2,086:		Line 2,148:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|PHOTORES
−	|Calculates the AmmoniaToNitrate (nitrification) specific Rate	+	|Macroalgae photorespiration rate
	|		|
	|		|
Line 2,096:		Line 2,158:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|PSATCONS
−	|A coef for the AmmoniaImobilization specific Rate	+	|phosphorus half-saturation constant for macroalgae
	|		|
	|		|
Line 2,106:		Line 2,168:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|RATIONC
−	|Acoef for for the NitrateToNgas specific Rate (denitrification)	+	|Macroalgae nitrogen/carbon ratio
	|		|
	|		|
Line 2,116:		Line 2,178:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|Acoef	+	|RATIOPC
−	|Acoef for the  NitrateImobilization specific Rate	+	|Macroalgae phosphorus/carbon ratio
	|		|
	|		|
Line 2,126:		Line 2,188:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|SALT_EFFECT
−	|Activation Energy for labil organic mater carbon decay rate	+	|Include salinity limitation on macroalgae growth
	|		|
	|		|
Line 2,136:		Line 2,198:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|SALTCRIT
−	|Coeficient for refractory OM decay rate	+	|Macroalgae critical salinity limit growth
	|		|
	|		|
Line 2,146:		Line 2,208:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|SALTMAX
−	|AE for Heterotrophs decay rate	+	|Macroalgae maximum salinity for growth
	|		|
	|		|
Line 2,156:		Line 2,218:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|SALTMIN
−	|AE activation energy for the Autotrophs C specific decay (death) Rate	+	|Macroalgae minimum salinity for growth
	|		|
	|		|
Line 2,166:		Line 2,228:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|SALTOPT
−	|AE for the Anaerobic C specific decay (death) Rate	+	|Macroalgae optimum salinity for growth
	|		|
	|		|
Line 2,176:		Line 2,238:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|SOLEXCR
−	|Calculates the AmmoniaToNitrate (nitrification) specific Rate.	+	|Fraction of soluble inorganic material excreted by macroalgae
	|		|
	|		|
Line 2,186:		Line 2,248:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|TCONST1
−	|Calculates the AmmoniaImobilization specific Rate	+	|Constant to control temperature response curve shape
	|		|
	|		|
Line 2,196:		Line 2,258:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|TCONST2
−	|Activation Energy for the NitrateToNgas specific Rate	+	|Constant to control temperature response curve shape
	|		|
	|		|
Line 2,206:		Line 2,268:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|ActivationE	+	|TCONST3
−	|Activation Energy for the  NitrateImobilization specific Rate	+	|Constant to control temperature response curve shape
	|		|
	|		|
Line 2,216:		Line 2,278:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|CARBON	+	|TCONST4
−	|Determines if calculations of carbon related properties is performed	+	|Constant to control temperature response curve shape
	|		|
	|		|
Line 2,226:		Line 2,288:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|CARBON_EFICIENCY	+	|TMIN
−	|Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2	+	|Macroalgae minimum temperature for growth
	|		|
	|		|
Line 2,236:		Line 2,298:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|CARBON_EFICIENCY	+	|TOPTMAX
−	|Carbon assimilation efficiency for Anaerobic population	+	|Macroalgae optimum maximum temperature for growth
	|		|
	|		|
Line 2,246:		Line 2,308:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|MacroAlgae
−	|CN_RATIO	+	|TOPTMIN
−	|CN ratio of Hetrotrophs biomass	+	|Macroalgae optimum minimum temperature for growth
	|		|
	|		|
Line 2,254:		Line 2,316:
	|		|
	|		|
		+	|}
		+
		+	=== Module Profile===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleProfile.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|Profile
−	|CN_RATIO	+	|DT_OUTPUT_TIME
−	|CN ratio of Autotrophs biomass	+	|Time step to perform profile outputs in HDF5
	|		|
	|		|
Line 2,266:		Line 2,343:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|Profile
−	|CN_RATIO	+	|LOCALIZATION_I
−	|CN ratio of anaerobic population.	+	|Grid cell index I where to perform profile output
	|		|
	|		|
Line 2,276:		Line 2,353:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|Profile
−	|DTSECONDS	+	|LOCALIZATION_J
−	|Time step for sediment quality calculation	+	|Grid cell index J where to perform profile output
	|		|
	|		|
Line 2,286:		Line 2,363:
	|-		|-
	| Base 1		| Base 1
−	|SedimentQuality	+	|Profile
−	|EXPLICIT	+	|NAME
−	|Sistem is solved with explicit formulation	+	|Name of profile output
	|		|
	|		|
Line 2,294:		Line 2,371:
	|		|
	|		|
		+	|}
		+
		+	=== Module SedimentQuality===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleSedimentQuality.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|MINIMUM_POPULATION	+	|Acoef
−	|Minimum population for death rate to occur (below value no death)	+	|Coefficient for labile OM decay rate
	|		|
	|		|
Line 2,307:		Line 2,399:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|MINIMUM_POPULATION	+	|Acoef
−	|Minimum population for death rated to take place	+	|Acoef for Heterotrophs decay rate
	|		|
	|		|
Line 2,317:		Line 2,409:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|MINIMUM_POPULATION	+	|Acoef
−	|Minimum population for death rate top occur	+	|Acoef for Autotrophs C specific decay (death) Rate
	|		|
	|		|
Line 2,327:		Line 2,419:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|NITROGEN	+	|Acoef
−	|Option to activate or deactivate the calculation of Nitrogen related properties	+	|Acoef for the Anaerobic C specific decay (death) Rate
	|		|
	|		|
Line 2,337:		Line 2,429:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|NITROGEN_EFICIENCY	+	|Acoef
−	|NITROGEN EFICIENCY for autotrophic population	+	|Calculates the AmmoniaToNitrate (nitrification) specific Rate
	|		|
	|		|
Line 2,347:		Line 2,439:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|NITROGEN_EFICIENCY	+	|Acoef
−	|Nitrogen assimilation efficiency of anaerobic population	+	|A coef for the AmmoniaImobilization specific Rate
	|		|
	|		|
Line 2,357:		Line 2,449:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|POPULATION_CARBON_RATIO	+	|Acoef
−	|Convertion form carbon concentration to population for Anaerobic populations	+	|Acoef for for the NitrateToNgas specific Rate (denitrification)
	|		|
	|		|
Line 2,367:		Line 2,459:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|POPULATION_CARBON_RATIO	+	|Acoef
−	|COnversion form Carbon mass of hetrotrphs to population nºs	+	|Acoef for the  NitrateImobilization specific Rate
	|		|
	|		|
Line 2,377:		Line 2,469:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|POPULATION_CARBON_RATIO	+	|ActivationE
−	|Convertion form carbon biomass to nº of individual cells	+	|Activation Energy for labil organic mater carbon decay rate
	|		|
	|		|
Line 2,387:		Line 2,479:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Temperature for Autotrophs C specific decay (death) Rate	+	|Coeficient for refractory OM decay rate
	|		|
	|		|
Line 2,397:		Line 2,489:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Optimum temperature for the Anaerobic C specific decay (death) Rate	+	|AE for Heterotrophs decay rate
	|		|
	|		|
Line 2,407:		Line 2,499:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate	+	|AE activation energy for the Autotrophs C specific decay (death) Rate
	|		|
	|		|
Line 2,417:		Line 2,509:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Optimum temperature for the AmmoniaImobilization specific Rate	+	|AE for the Anaerobic C specific decay (death) Rate
	|		|
	|		|
Line 2,427:		Line 2,519:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|OPtimum temperature for the NitrateToNgas specific Rate	+	|Calculates the AmmoniaToNitrate (nitrification) specific Rate.
	|		|
	|		|
Line 2,437:		Line 2,529:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Optimum temperature for the NitrateImobilization specific Rate	+	|Calculates the AmmoniaImobilization specific Rate
	|		|
	|		|
Line 2,447:		Line 2,539:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Optimum temperature for decay rate	+	|Activation Energy for the NitrateToNgas specific Rate
	|		|
	|		|
Line 2,457:		Line 2,549:
	| Base 1		| Base 1
	|SedimentQuality		|SedimentQuality
−	|Temperature	+	|ActivationE
−	|Optimum Temperature for rate	+	|Activation Energy for the  NitrateImobilization specific Rate
	|		|
	|		|
Line 2,464:		Line 2,556:
	|		|
	|		|
−	|}
−
−	=== Module WaterQuality===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleWaterQuality.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|AFG	+	|CARBON
−	|Growth coefficient dependent of fishfood availability HalfSaturationConstant	+	|Determines if calculations of carbon related properties is performed
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|AGE
−	|Water "Age" : Lagrangean property
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|ASS_EFIC	+	|CARBON_EFICIENCY
−	|Phytoplankton: Assimilation efficiency of flagellates by the zooplankton	+	|Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|ATG
−	|Growth coefficient dependent of temperature
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|ATZ	+	|CARBON_EFICIENCY
−	|Death coefficient dependent of temperature	+	|Carbon assimilation efficiency for Anaerobic population
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|AWG
−	|Growth coefficient dependent of larvae weight
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|AWZ	+	|CN_RATIO
−	|Death coefficient dependent of larvae weight	+	|CN ratio of Hetrotrophs biomass
−	|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BACINGCIL
−	|Ciliates: Proportion of bacteria in microzooplankton ingestion
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BACMINSUB
−	|Bacteria: Minimum substract concentration for bacteria uptake
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BACNCONS	+	|CN_RATIO
−	|Bacteria: Half-saturation constant for bacteria nutrient uptake	+	|CN ratio of Autotrophs biomass
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BACTERIA
−	|Bacteria: Processes Simulation
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BACTRATIOOC	+	|CN_RATIO
−	|Oxygen: Bacteria Oxygen/Carbon Ratio	+	|CN ratio of anaerobic population.
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BARESPCO
−	|Bacteria: Excretion Rate
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BMAXUPTA	+	|DTSECONDS
−	|Bacteria: Maximum nutrient uptake at the reference temperature	+	|Time step for sediment quality calculation
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BOD
−	|BOD: Processes Simulation
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BODCOEF	+	|EXPLICIT
−	|BOD: BOD oxidation coefficient	+	|Sistem is solved with explicit formulation
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BODOSSAT
−	|BOD: Oxygen limitation half-saturation constant
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BODREF	+	|MINIMUM_POPULATION
−	|BOD: BOD oxidation at the reference temperature	+	|Minimum population for death rate to occur (below value no death)
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BRATIONC
−	|Bacteria: Nitrogen/Carbon Ratio
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BTG	+	|MINIMUM_POPULATION
−	|Growth coefficient dependent of temperature	+	|Minimum population for death rated to take place
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BTZ
−	|Death coefficient dependent of temperature
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|BWG	+	|MINIMUM_POPULATION
−	|Growth coefficient dependent of larvae weight	+	|Minimum population for death rate top occur
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|BWZ
−	|Death coefficient dependent of larvae weight
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CEXCCONS	+	|NITROGEN
−	|Ciliates: Excretion constant curve	+	|Option to activate or deactivate the calculation of Nitrogen related properties
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CEXCFAC
−	|Ciliates: Excretion factor
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CILBACASS	+	|NITROGEN_EFICIENCY
−	|Ciliates: Assimilation coefficient of bacteria by microzooplankton	+	|NITROGEN EFICIENCY for autotrophic population
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CILCORATIO
−	|Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CILEFFCAPBA	+	|NITROGEN_EFICIENCY
−	|Ciliates: Capture efficiency of bacteria	+	|Nitrogen assimilation efficiency of anaerobic population
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CILEFFCAPPHY
−	|Ciliates: Capture efficiency of phytoplankton
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CILIATE	+	|POPULATION_CARBON_RATIO
−	|Ciliates: Processes Simulation	+	|Convertion form carbon concentration to population for Anaerobic populations
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CILPHYASS
−	|Ciliates: Assimilation coefficient of flagellates by microzooplankton
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CILPREYMIN	+	|POPULATION_CARBON_RATIO
−	|Ciliates: Minimum prey concentration for grazing	+	|COnversion form Carbon mass of hetrotrphs to population nºs
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CILRATINGZOO
−	|Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CINGMAX	+	|POPULATION_CARBON_RATIO
−	|Ciliates: Maximum ingestion rate	+	|Convertion form carbon biomass to nº of individual cells
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CRATIONC
−	|Ciliates: Nitrogen/Carbon Ratio
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|CRATIOPC	+	|Temperature
−	|Ciliates: Phosphorus/Carbon Ratio	+	|Temperature for Autotrophs C specific decay (death) Rate
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|CREFRESP
−	|Ciliates: Carbon consumption rate by respiration
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DENITREF	+	|Temperature
−	|Nitrogen: Reference denitirfication rate	+	|Optimum temperature for the Anaerobic C specific decay (death) Rate
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DENSATCO
−	|Nitrogen: Denitrification half-saturation constant
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DIASS_EFIC	+	|Temperature
−	|Diatoms: Assimilation efficiency of diatoms by zooplankton	+	|Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DIATOMS
−	|Diatoms: Processes Simulation
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DIDISSDON	+	|Temperature
−	|Diatoms: Fraction of dissolved organic material in excretions	+	|Optimum temperature for the AmmoniaImobilization specific Rate
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DIEXCRCONS
−	|Diatoms: Excretion constant
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DIFENDREPC	+	|Temperature
−	|Diatoms: Endogenous respiration constant	+	|OPtimum temperature for the NitrateToNgas specific Rate
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DIGRAZMIN
−	|Zooplankton: Minimum diatoms concentration for grazing
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DIGROWMAX	+	|Temperature
−	|Diatoms: Maximum gross growth rate	+	|Optimum temperature for the  NitrateImobilization specific Rate
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DIMORTCON	+	|Temperature
−	|Diatoms: Mortality half-saturation Constant	+	|Optimum temperature for decay rate
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 1		| Base 1
−	|WaterQuality	+	|SedimentQuality
−	|DIMORTMAX	+	|Temperature
−	|Diatoms: Maximum Mortality Rate	+	|Optimum Temperature for rate
		+	|
		+	|
		+	|
	|		|
	|		|
		+	|}
		+
		+	=== Module WaterQuality===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleWaterQuality.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DINSATCONS	+	|AFG
−	|Diatoms: Nitrogen half-saturation constant	+	|Growth coefficient dependent of fishfood availability HalfSaturationConstant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,825:		Line 2,834:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIPHOTOIN	+	|AGE
−	|Diatoms: Optimum light intensity for photosynthesis	+	|Water "Age" : Lagrangean property
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,832:		Line 2,844:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIPHOTORES	+	|ASS_EFIC
−	|Diatoms: Fraction of actual photosynthesis oxidized by photorespiration	+	|Phytoplankton: Assimilation efficiency of flagellates by the zooplankton
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DIPSATCONS
−	|Diatoms: Phosphorus half-saturation constant
	|		|
	|		|
Line 2,846:		Line 2,854:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIRATINGZOO	+	|ATG
−	|Zooplankton: Proportion of diatoms in mesozooplankton ingestion	+	|Growth coefficient dependent of temperature
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DIRATIONC
−	|Diatoms: Nitrogen/Carbon Ratio
	|		|
	|		|
Line 2,860:		Line 2,864:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIRATIOPC	+	|ATZ
−	|Diatoms: Phosphorus/Carbon Ratio	+	|Death coefficient dependent of temperature
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,867:		Line 2,874:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIRATIOSIC	+	|AWG
−	|Diatoms: Silica/Carbon Ratio	+	|Growth coefficient dependent of larvae weight
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,874:		Line 2,884:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DISISATCONS	+	|AWZ
−	|Diatoms: Silicate half-saturation constant	+	|Death coefficient dependent of larvae weight
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,881:		Line 2,894:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DISOLEXCR	+	|BACINGCIL
−	|Diatoms: Fraction of soluble inorganic material in excretions	+	|Ciliates: Proportion of bacteria in microzooplankton ingestion
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,888:		Line 2,904:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITCONST1	+	|BACMINSUB
−	|Diatoms: Constant to control temperature response curve shape	+	|Bacteria: Minimum substract concentration for bacteria uptake
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,895:		Line 2,914:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITCONST2	+	|BACNCONS
−	|Diatoms: Constant to control temperature response curve shape	+	|Bacteria: Half-saturation constant for bacteria nutrient uptake
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,902:		Line 2,924:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITCONST3	+	|BACTERIA
−	|Diatoms: Constant to control temperature response curve shape	+	|Bacteria: Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,909:		Line 2,934:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITCONST4	+	|BACTRATIOOC
−	|Diatoms: Constant to control temperature response curve shape	+	|Oxygen: Bacteria Oxygen/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,916:		Line 2,944:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITMAX	+	|BARESPCO
−	|Diatoms: Maximum temperature tolerable for growth	+	|Bacteria: Excretion Rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,923:		Line 2,954:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITMIN	+	|BMAXUPTA
−	|Diatoms: Minimum tolerable temperature for growth	+	|Bacteria: Maximum nutrient uptake at the reference temperature
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|DITOPTMAX
−	|Diatoms: Maximum temperature of the optimal interval for photosynthesis
	|		|
	|		|
Line 2,937:		Line 2,964:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DITOPTMIN	+	|BOD
−	|Diatoms: Minimum temperature of the optimal interval for photosynthesis	+	|BOD: Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,944:		Line 2,974:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIZOASS	+	|BODCOEF
−	|Zooplankton: Assimilation coefficient of diatoms by mesozooplankton	+	|BOD: BOD oxidation coefficient
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,951:		Line 2,984:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DIZOOEFFCAP	+	|BODOSSAT
−	|Zooplankton: Capture efficiency of diatoms	+	|BOD: Oxygen limitation half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,958:		Line 2,994:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|DTSECONDS	+	|BODREF
−	|Time step for water quality processes calculation	+	|BOD: BOD oxidation at the reference temperature
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,965:		Line 3,004:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|EXCRCONS	+	|BRATIONC
−	|Phytoplankton: Excretion constant	+	|Bacteria: Nitrogen/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,972:		Line 3,014:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|EXPLICIT	+	|BTG
−	|Explicit Method	+	|Growth coefficient dependent of temperature
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,979:		Line 3,024:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FDISSDON	+	|BTZ
−	|Phytoplankton: Fraction of dissolved organic material in excretions	+	|Death coefficient dependent of temperature
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,986:		Line 3,034:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FENDREPC	+	|BWG
−	|Phytoplankton: Endogenous respiration constant	+	|Growth coefficient dependent of larvae weight
		+	|
		+	|
		+	|
	|		|
	|		|
Line 2,993:		Line 3,044:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FINAL_AGE	+	|BWZ
−	|Larvae Final Age	+	|Death coefficient dependent of larvae weight
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,000:		Line 3,054:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FINAL_LENGTH	+	|CEXCCONS
−	|Larvae Final Length	+	|Ciliates: Excretion constant curve
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|FISHFOOD_REF
−	|Reference food availability
	|		|
	|		|
Line 3,014:		Line 3,064:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FMORTCON	+	|CEXCFAC
−	|Phytoplankton: Mortality half saturation rate	+	|Ciliates: Excretion factor
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,021:		Line 3,074:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FMORTMAX	+	|CILBACASS
−	|Phytoplankton: Maximum mortality	+	|Ciliates: Assimilation coefficient of bacteria by microzooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,028:		Line 3,084:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FRATIONC	+	|CILCORATIO
−	|Phytoplankton: Nitrogen/Carbon Ratio	+	|Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,035:		Line 3,094:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FRATIOPC	+	|CILEFFCAPBA
−	|Phytoplankton: Phosphorus/Carbon ratio	+	|Ciliates: Capture efficiency of bacteria
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,042:		Line 3,104:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FREGSATC	+	|CILEFFCAPPHY
−	|Nutrients: Nutrient regeneration half-saturation rate	+	|Ciliates: Capture efficiency of phytoplankton
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,049:		Line 3,114:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|FSOLEXCR	+	|CILIATE
−	|Phytoplankton: Fraction of soluble inorganic in excretions	+	|Ciliates: Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,056:		Line 3,124:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|GRAZBACMIN	+	|CILPHYASS
−	|Ciliates: Minimum flagellates concentration for grazing	+	|Ciliates: Assimilation coefficient of flagellates by microzooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,063:		Line 3,134:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|GRAZCILMIN	+	|CILPREYMIN
−	|Zooplankton: Minimum microzooplankton concentration for grazing	+	|Ciliates: Minimum prey concentration for grazing
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,070:		Line 3,144:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|GRAZFITOMIN	+	|CILRATINGZOO
−	|Zooplankton: Minimum fagellates concentration for grazing	+	|Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,077:		Line 3,154:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|GROWMAXF	+	|CINGMAX
−	|Phytoplankton: Maximum growth rate	+	|Ciliates: Maximum ingestion rate
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|GROWMAXZ
−	|Zooplankton: Maximum zooplankton growth rate
	|		|
	|		|
Line 3,091:		Line 3,164:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|IMPLICIT	+	|CRATIONC
−	|Implicit Method Calculation	+	|Ciliates: Nitrogen/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,098:		Line 3,174:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|INGCONSC	+	|CRATIOPC
−	|Ciliates: Half-saturation constant for grazing	+	|Ciliates: Phosphorus/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,105:		Line 3,184:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|INGCONSZ	+	|CREFRESP
−	|Zooplankton: Half-saturation constant for predation	+	|Ciliates: Carbon consumption rate by respiration
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,112:		Line 3,194:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|INIT_AGE	+	|DENITREF
−	|Larvae Inital Age	+	|Nitrogen: Reference denitirfication rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,119:		Line 3,204:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|INIT_LENGTH	+	|DENSATCO
−	|Larvae Inital Length	+	|Nitrogen: Denitrification half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,126:		Line 3,214:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|INTER_AGE	+	|DIASS_EFIC
−	|Larvae Intermediate Age	+	|Diatoms: Assimilation efficiency of diatoms by zooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,133:		Line 3,224:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|INTER_LENGTH	+	|DIATOMS
−	|Larvae Intermediate Length	+	|Diatoms: Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,140:		Line 3,234:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|IVLEVCON	+	|DIDISSDON
−	|Zooplankton: Ivlev grazing constant	+	|Diatoms: Fraction of dissolved organic material in excretions
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,147:		Line 3,244:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|LARVAE	+	|DIEXCRCONS
−	|Larvae Processes Simulation	+	|Diatoms: Excretion constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,154:		Line 3,254:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|LDENSITY	+	|DIFENDREPC
−	|Larvae density factor	+	|Diatoms: Endogenous respiration constant
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|LSHAPE
−	|Larvae shape factor
	|		|
	|		|
Line 3,168:		Line 3,264:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MAXMORTCI	+	|DIGRAZMIN
−	|Ciliates: Maximum Mortality Rate	+	|Zooplankton: Minimum diatoms concentration for grazing
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,175:		Line 3,274:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MAXMORTZ	+	|DIGROWMAX
−	|Zooplankton: Maximum mortality rate	+	|Diatoms: Maximum gross growth rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,182:		Line 3,284:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MINMORTCI	+	|DIMORTCON
−	|Ciliates: Minimum Mortality rate	+	|Diatoms: Mortality half-saturation Constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,189:		Line 3,294:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MINMORTZ	+	|DIMORTMAX
−	|Zooplankton: Minimum mortality rate	+	|Diatoms: Maximum Mortality Rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,196:		Line 3,304:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MINOXYGEN	+	|DINSATCONS
−	|Oxygen: Minimum oxygen concentration allowed	+	|Diatoms: Nitrogen half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,203:		Line 3,314:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MORTCICOEF	+	|DIPHOTOIN
−	|Ciliates: Mortality coefficient	+	|Diatoms: Optimum light intensity for photosynthesis
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,210:		Line 3,324:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|MORTZCOEF	+	|DIPHOTORES
−	|Zooplankton: Shape factor for the mortality curve of zooplankton	+	|Diatoms: Fraction of actual photosynthesis oxidized by photorespiration
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,217:		Line 3,334:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NATMORB	+	|DIPSATCONS
−	|Bacteria: Natural mortality rate	+	|Diatoms: Phosphorus half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,224:		Line 3,344:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NITONRAT	+	|DIRATINGZOO
−	|Oxygen: Oxygen/Carbon in Nitrate	+	|Zooplankton: Proportion of diatoms in mesozooplankton ingestion
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,231:		Line 3,354:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NITRIREF	+	|DIRATIONC
−	|Nitrogen: Reference nitrification rate	+	|Diatoms: Nitrogen/Carbon Ratio
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|NITROGEN
−	|Nitrogen: Biogeochemical Processes Simulation
	|		|
	|		|
Line 3,245:		Line 3,364:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NITSATCO	+	|DIRATIOPC
−	|Nitrogen: Nitrification half-saturation constant	+	|Diatoms: Phosphorus/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,252:		Line 3,374:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NMINENR	+	|DIRATIOSIC
−	|Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)	+	|Diatoms: Silica/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,259:		Line 3,384:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NMINR	+	|DISISATCONS
−	|Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)	+	|Diatoms: Silicate half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,266:		Line 3,394:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NOPCOEF	+	|DISOLEXCR
−	|Nitrogen: PON decomposition temperature coefficient	+	|Diatoms: Fraction of soluble inorganic material in excretions
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,273:		Line 3,404:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NOPREF	+	|DITCONST1
−	|Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)	+	|Diatoms: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,280:		Line 3,414:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NPHASES	+	|DITCONST2
−	|Number of larvae phases (valid values are 1 and 2)	+	|Diatoms: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,287:		Line 3,424:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|NSATCONS	+	|DITCONST3
−	|Phytoplankton: Nitrogen half-saturation constant	+	|Diatoms: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,294:		Line 3,434:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|OCRATIO	+	|DITCONST4
−	|Oxygen: Oxygen/Carbon in CO2	+	|Diatoms: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,301:		Line 3,444:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|OMRATIONC	+	|DITMAX
−	|Oxygen: Organic Matter Nitrogen/Carbon Ratio	+	|Diatoms: Maximum temperature tolerable for growth
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,308:		Line 3,454:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|OMRATIOPC	+	|DITMIN
−	|Oxygen: Organic Matter Phosphorus/Carbon Ratio	+	|Diatoms: Minimum tolerable temperature for growth
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|PHDECOMP
−	|Nitrogen: Fraction of PON available for mineralization
	|		|
	|		|
Line 3,322:		Line 3,464:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHOSOPRAT	+	|DITOPTMAX
−	|Oxygen: Oxygen/Carbon in Phosphate	+	|Diatoms: Maximum temperature of the optimal interval for photosynthesis
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,329:		Line 3,474:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHOSPHOR	+	|DITOPTMIN
−	|Phosphorus: Biogeochemical Processes Simulation	+	|Diatoms: Minimum temperature of the optimal interval for photosynthesis
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,336:		Line 3,484:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHOTOIN	+	|DIZOASS
−	|Phytoplankton: Optimum light intensity for photosyntesis	+	|Zooplankton: Assimilation coefficient of diatoms by mesozooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,343:		Line 3,494:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHOTORES	+	|DIZOOEFFCAP
−	|Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration	+	|Zooplankton: Capture efficiency of diatoms
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,350:		Line 3,504:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHOTOSOC	+	|DTSECONDS
−	|Oxygen: Photosynthesis Oxygen/Carbon ratio	+	|Time step for water quality processes calculation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,357:		Line 3,514:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHYINGCIL	+	|EXCRCONS
−	|Ciliates: Proportion of flagellates in microzooplankton ingestion	+	|Phytoplankton: Excretion constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,364:		Line 3,524:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHYRATING	+	|EXPLICIT
−	|Zooplankton: proportion of phytoplankton in mesozooplankton ingestion	+	|Explicit Method
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,371:		Line 3,534:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PHYTO	+	|FDISSDON
−	|Phytoplankton: Processes Simulation	+	|Phytoplankton: Fraction of dissolved organic material in excretions
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,378:		Line 3,544:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PLANK_OC_RAT	+	|FENDREPC
−	|Oxygen: Oxygen/Carbon ratio in plankton respiration	+	|Phytoplankton: Endogenous respiration constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,385:		Line 3,554:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PMINNR	+	|FINAL_AGE
−	|Phosphorus: DOPnr mineralization rate at reference temperature	+	|Larvae Final Age
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|PMINNRCOEF
−	|Phosphorus: DOPnr mineralization temperature coefficient
	|		|
	|		|
Line 3,399:		Line 3,564:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PMINR	+	|FINAL_LENGTH
−	|Phosphorus: DOPre mineralization rate at reference tempearture	+	|Larvae Final Length
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,406:		Line 3,574:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PMINRCOEF	+	|FISHFOOD_REF
−	|Phosphorus: DOPre mineralization temperature coefficient	+	|Reference food availability
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,413:		Line 3,584:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PPARTMIN	+	|FMORTCON
−	|Phosphorus: POP decomposition rate at reference temperature	+	|Phytoplankton: Mortality half saturation rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,420:		Line 3,594:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|PSATCONS	+	|FMORTMAX
−	|Phytoplankton: Phosphorus half-saturation constant	+	|Phytoplankton: Maximum mortality
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,427:		Line 3,604:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|SEMIIMP	+	|FRATIONC
−	|Semi-implicit Method Calculation	+	|Phytoplankton: Nitrogen/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,434:		Line 3,614:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|SIDISSTCOEF	+	|FRATIOPC
−	|Silica: Biogenic silica dissolution temperature coefficient	+	|Phytoplankton: Phosphorus/Carbon ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,441:		Line 3,624:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|SIKDISS	+	|FREGSATC
−	|Silica: Biogenic silica dissolution rate in the water column at the reference temperature	+	|Nutrients: Nutrient regeneration half-saturation rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,448:		Line 3,634:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|SILICA	+	|FSOLEXCR
−	|Silica: Processes Simulation	+	|Phytoplankton: Fraction of soluble inorganic in excretions
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,455:		Line 3,644:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TBCONST1	+	|GRAZBACMIN
−	|Bacteria: Constant to control temperature response curve shape	+	|Ciliates: Minimum flagellates concentration for grazing
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,462:		Line 3,654:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TBCONST2	+	|GRAZCILMIN
−	|Bacteria: Constant to control temperature response curve shape	+	|Zooplankton: Minimum microzooplankton concentration for grazing
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|TBCONST3
−	|Bacteria: Constant to control temperature response curve shape
	|		|
	|		|
Line 3,476:		Line 3,664:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TBCONST4	+	|GRAZFITOMIN
−	|Bacteria: Constant to control temperature response curve shape	+	|Zooplankton: Minimum fagellates concentration for grazing
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,483:		Line 3,674:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TBMAX	+	|GROWMAXF
−	|Bacteria: Maximum temperature tolerable temperature for growth	+	|Phytoplankton: Maximum growth rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,490:		Line 3,684:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TBMIN	+	|GROWMAXZ
−	|Bacteria: Minimum temperature tolerable for growth	+	|Zooplankton: Maximum zooplankton growth rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,497:		Line 3,694:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TDENCOEF	+	|IMPLICIT
−	|Nitrogen: Denitrification Temperature Coefficient	+	|Implicit Method Calculation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,504:		Line 3,704:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TEMPERATURE_REF	+	|INGCONSC
−	|Larvae Reference temperature	+	|Ciliates: Half-saturation constant for grazing
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,511:		Line 3,714:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TFCONST1	+	|INGCONSZ
−	|Phytoplankton: Constant to control temperature response curve shape	+	|Zooplankton: Half-saturation constant for predation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,518:		Line 3,724:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TFCONST2	+	|INIT_AGE
−	|Phytoplankton: Constant to control temperature response curve shape	+	|Larvae Inital Age
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,525:		Line 3,734:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TFCONST3	+	|INIT_LENGTH
−	|Phytoplankton: Constant to control temperature response curve shape	+	|Larvae Inital Length
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,532:		Line 3,744:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TFCONST4	+	|INTER_AGE
−	|Phytoplankton: Constant to control temperature response curve shape	+	|Larvae Intermediate Age
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,539:		Line 3,754:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TFMAX	+	|INTER_LENGTH
−	|Phytoplankton: Maximum temperature tolerable for growth	+	|Larvae Intermediate Length
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|TFMIN
−	|Phytoplankton: Minimum  temperature tolerable for growth
	|		|
	|		|
Line 3,553:		Line 3,764:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TMINNR	+	|IVLEVCON
−	|Nitrogen: DONnr mineralization temperature coefficient	+	|Zooplankton: Ivlev grazing constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,560:		Line 3,774:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TMINR	+	|LARVAE
−	|Nitrogen: DONr mineralization temperature coefficient	+	|Larvae Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,567:		Line 3,784:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TNITCOEF	+	|LDENSITY
−	|Nitrogen: Nitrification temperature coefficient	+	|Larvae density factor
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,574:		Line 3,794:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TOPTBMAX	+	|LSHAPE
−	|Bacteria: Maximum temperature of the optimal interval for growth	+	|Larvae shape factor
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,581:		Line 3,804:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TOPTBMIN	+	|MAXMORTCI
−	|Bacteria: Minimum temperature of the optimal interval for growth	+	|Ciliates: Maximum Mortality Rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,588:		Line 3,814:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TOPTFMAX	+	|MAXMORTZ
−	|Phytoplankton: Maximum temperature of the optimal interval for photosyntesis	+	|Zooplankton: Maximum mortality rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,595:		Line 3,824:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TOPTFMIN	+	|MINMORTCI
−	|Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis	+	|Ciliates: Minimum Mortality rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,602:		Line 3,834:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TOPTZMAX	+	|MINMORTZ
−	|Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth	+	|Zooplankton: Minimum mortality rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,609:		Line 3,844:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TOPTZMIN	+	|MINOXYGEN
−	|Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth	+	|Oxygen: Minimum oxygen concentration allowed
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,616:		Line 3,854:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TPPARTMINCOEF	+	|MORTCICOEF
−	|Phosphorus: POP decomposition temperature coefficient	+	|Ciliates: Mortality coefficient
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|TZCONST1
−	|Zooplankton: Constant to control temperature response curve shape
	|		|
	|		|
Line 3,630:		Line 3,864:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TZCONST2	+	|MORTZCOEF
−	|Zooplankton: Constant to control temperature response curve shape	+	|Zooplankton: Shape factor for the mortality curve of zooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,637:		Line 3,874:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TZCONST3	+	|NATMORB
−	|Zooplankton: Constant to control temperature response curve shape	+	|Bacteria: Natural mortality rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,644:		Line 3,884:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TZCONST4	+	|NITONRAT
−	|Zooplankton: Constant to control temperature response curve shape	+	|Oxygen: Oxygen/Carbon in Nitrate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,651:		Line 3,894:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TZMAX	+	|NITRIREF
−	|Zooplankton: Maximum temperature tolerable for growth	+	|Nitrogen: Reference nitrification rate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,658:		Line 3,904:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|TZMIN	+	|NITROGEN
−	|Zooplankton: Minimum temperature tolerable for growth	+	|Nitrogen: Biogeochemical Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,665:		Line 3,914:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZDISSDON	+	|NITSATCO
−	|Zooplankton: Dissolved organic fraction in excretions	+	|Nitrogen: Nitrification half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,672:		Line 3,924:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZEXCCONS	+	|NMINENR
−	|Zooplankton: Excretion constant for zooplankton	+	|Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,679:		Line 3,934:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZEXCFAC	+	|NMINR
−	|Zooplankton: Excretion Factor	+	|Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,686:		Line 3,944:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZINGMAX	+	|NOPCOEF
−	|Zooplankton: Maximun ingestion rate	+	|Nitrogen: PON decomposition temperature coefficient
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,693:		Line 3,954:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZOCILASS	+	|NOPREF
−	|Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton	+	|Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)
		+	|
	|		|
	|		|
−	|-
−	| Base 1
−	|WaterQuality
−	|ZOCRATIO
−	|Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
	|		|
	|		|
Line 3,707:		Line 3,964:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZOO	+	|NPHASES
−	|Zooplankton: Processes Simulation	+	|Number of larvae phases (valid values are 1 and 2)
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,714:		Line 3,974:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZOOEFFCAPCIL	+	|NSATCONS
−	|Zooplankton: Capture efficiency of microzoolankton	+	|Phytoplankton: Nitrogen half-saturation constant
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,721:		Line 3,984:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZOOEFFCAPHY	+	|OCRATIO
−	|Zooplankton: Capture efficiency of phytoplankton	+	|Oxygen: Oxygen/Carbon in CO2
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,728:		Line 3,994:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZOOPREYMIN	+	|OMRATIONC
−	|Zooplankton: Minimum prey concentration for grazing	+	|Oxygen: Organic Matter Nitrogen/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,735:		Line 4,004:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZOPHYASS	+	|OMRATIOPC
−	|Zooplankton: Assimilation coefficient of flagellates by mesozooplankton	+	|Oxygen: Organic Matter Phosphorus/Carbon Ratio
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,742:		Line 4,014:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZPREDMOR	+	|PHDECOMP
−	|Zooplankton: Predatory mortality rate (predation by higher trophic levels)	+	|Nitrogen: Fraction of PON available for mineralization
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,749:		Line 4,024:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZRATIONC	+	|PHOSOPRAT
−	|Zooplankton: Nitrogen/Carbon Ratio	+	|Oxygen: Oxygen/Carbon in Phosphate
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,756:		Line 4,034:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZRATIOPC	+	|PHOSPHOR
−	|Zooplankton: Phosphorus/Carbon ratio	+	|Phosphorus: Biogeochemical Processes Simulation
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,763:		Line 4,044:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZREFRESP	+	|PHOTOIN
−	|Zooplankton: Carbon consumption rate by respiration	+	|Phytoplankton: Optimum light intensity for photosyntesis
		+	|
		+	|
		+	|
	|		|
	|		|
Line 3,770:		Line 4,054:
	| Base 1		| Base 1
	|WaterQuality		|WaterQuality
−	|ZSOLEXCR	+	|PHOTORES
−	|Zooplankton: Soluble inorganic fraction in excretions	+	|Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration
	|		|
	|		|
Line 3,777:		Line 4,061:
	|		|
	|		|
−	|}	+	|-
−		+	| Base 1
−	==MOHID Base 2==	+	|WaterQuality
−		+	|PHOTOSOC
−	=== Module Atmosphere===	+	|Oxygen: Photosynthesis Oxygen/Carbon ratio
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleAtmosphere.F90 Source Code]	+	|
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 2
−	|Atmosphere
−	|BOX_TIME_SERIE
−	|Output of property values in time series files, integrated in boxes.
	|		|
	|		|
−	|-
−	| Base 2
−	|Atmosphere
−	|DATA_COLUMN
−	|Number of column in the time series file.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|FILENAME	+	|PHYINGCIL
−	|Path to the file with the time series.	+	|Ciliates: Proportion of flagellates in microzooplankton ingestion
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Atmosphere
−	|IRRIGATION
−	|Property added by irrigation
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|NO_INTERPOLATION	+	|PHYRATING
−	|This keyword is deprecated. Use accumulated values use instead.	+	|Zooplankton: proportion of phytoplankton in mesozooplankton ingestion
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Atmosphere
−	|ACCUMULATE_VALUES
−	|Use mm with ACCUMULATE_VALUES = 1.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|USE_ORIGINAL_VALUES	+	|PHYTO
−	|use a FLUX (ex. mm/hour) with USE_ORIGINAL_VALUES = 1.	+	|Phytoplankton: Processes Simulation
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Atmosphere
−	|OUTPUT_HDF
−	|Output of property values in HDF files.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|OUTPUT_TIME	+	|PLANK_OC_RAT
−	|Output instants of HDF5 file.	+	|Oxygen: Oxygen/Carbon ratio in plankton respiration
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	| rowspan="2" | RADIATION_METHOD	+	|PMINNR
−	| rowspan="2" | Method to compute solar radiation	+	|Phosphorus: DOPnr mineralization rate at reference temperature
−	|1	+	|
−	|Climatologic solar radiation algorithm	+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|2	+	|PMINNRCOEF
−	|CEQUALW2 solar radiation algorithm	+	|Phosphorus: DOPnr mineralization temperature coefficient
−	|-	+	|
−	| Base 2
−	|Atmosphere
−	|RANDOM_COMPONENT
−	|Random component of property.
	|		|
	|		|
−	|-
−	| Base 2
−	|Atmosphere
−	|STATISTICS
−	|Choose to compute the statistics of this property
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|STATISTICS_FILE	+	|PMINR
−	|Path to the file with the statistics definition for this property.	+	|Phosphorus: DOPre mineralization rate at reference tempearture
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Atmosphere
−	|TIME_SERIE
−	|Output of property values in time series files.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Atmosphere	+	|WaterQuality
−	|TIME_SERIE_LOCATION	+	|PMINRCOEF
−	|Path to the file that has the time series location characteristics.	+	|Phosphorus: DOPre mineralization temperature coefficient
	|		|
	|		|
Line 3,907:		Line 4,151:
	|		|
	|		|
−	|}
−
−	=== Module Geometry===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|WaterQuality
−	! scope="col" |Keyword	+	|PPARTMIN
−	! scope="col" |Keyword description	+	|Phosphorus: POP decomposition rate at reference temperature
−	! scope="col" |Options	+	|
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 2
−	|Geometry
−	|DISPLACEMENT_LIMIT
−	|the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1)
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|DOMAINDEPTH
−	|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|EMPTY_TOP_LAYERS	+	|PSATCONS
−	|Number of empty layers counting from top	+	|Phytoplankton: Phosphorus half-saturation constant
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|EQUIDISTANT
−	|Thickness of layers admitting that all the layers have the same thickness
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	| rowspan="2" |FACES_OPTION	+	|SEMIIMP
−	| rowspan="2" |Methodology to compute areas between cells	+	|Semi-implicit Method Calculation
−	|2
−	|Average thickness of the adjacent water columns (advised option)
−	|-
−	| Base 2
−	|Geometry
−	|3
−	|Minimum thickness of the adjacent water columns (advanced user option)
−	|-
−	| Base 2
−	|Geometry
−	|GRIDMOVEMENTDUMP
	|		|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|ID
−	|Domain ID
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|IMPER_COEF_U	+	|SIDISSTCOEF
−	|U Coefficient to compute faces areas in U points	+	|Silica: Biogenic silica dissolution temperature coefficient
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|IMPER_COEF_V
−	|V Coefficient to compute faces areas in V points
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|IMPER_COEFX_U	+	|SIKDISS
−	|X_U Coefficient to compute faces areas in U points	+	|Silica: Biogenic silica dissolution rate in the water column at the reference temperature
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|IMPER_COEFX_V
−	|X_V Coefficient to compute faces areas in V points
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|IMPERMEABILITY	+	|SILICA
−	|Consider impermeable cell faces	+	|Silica: Processes Simulation
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	| rowspan="2" |INITIALIZATION_METHOD
−	| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
−	|CARTESIAN
−	|Cartesian type coordinates
−	|-
−	| Base 2
−	|Geometry
−	|SIGMA
−	|Sigma type coordinates
−	|-
−	| Base 2
−	|Geometry
−	|LAYERS
−	|Number of layers
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|LAYERTHICKNESS	+	|TBCONST1
−	|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers	+	|Bacteria: Constant to control temperature response curve shape
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|MIN_TOP_THICKNESS
−	|minimum thickness of collapsing cells of the Harmonic domain
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|MINEVOLVELAYERTHICKNESS	+	|TBCONST2
−	|Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1)	+	|Bacteria: Constant to control temperature response curve shape
	|		|
−	|
−	|-
−	| Base 2
−	|Geometry
−	|MINIMUMDEPTH
−	|water column thickness below which the cell is considered uncovered
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|MININITIALLAYERTHICKNESS
−	|minimal thickness of the bottom cells
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|TOLERANCEDEPTH	+	|TBCONST3
−	|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate	+	|Bacteria: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|TOTALTHICKNESS	+	|TBCONST4
−	|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates	+	|Bacteria: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	| rowspan="8" |TYPE	+	|TBMAX
−	| rowspan="8" |Type of vertical coordinate of the domain	+	|Bacteria: Maximum temperature tolerable temperature for growth
−	|CARTESIAN	+	|
−	|Cartesian coordinates	+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|CARTESIANTOP	+	|TBMIN
−	|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)	+	|Bacteria: Minimum temperature tolerable for growth
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|FIXSEDIMENT	+	|TDENCOEF
−	|Fixed Sediment coordinates	+	|Nitrogen: Denitrification Temperature Coefficient
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|FIXSPACING	+	|TEMPERATURE_REF
−	|Fixed Spacing coordinates - used to study flows close to the bottom	+	|Larvae Reference temperature
−	|-	+	|
−	| Base 2	+	|
−	|Geometry
−	|HARMONIC
−	|Harmonic coordinates - the horizontal faces close to the surface
−	expand and collapse depending on the variation of the surface elevation. This
−	coordinate was implemented in the geometry module to simulate reservoirs.
−	|-
−	| Base 2
−	|Geometry
−	|LAGRANGIAN
−	|Lagrangian coordinates - moves the upper and
−	lower faces with the vertical flow velocity.
−	|-
−	| Base 2
−	|Geometry
−	|REMOVE_LAND_BOTTOM_LAYERS
−	|Keywork do remove bottom layers with no water cells
−	|-
−	| Base 2
−	|Geometry
−	|SIGMA
−	|Sigma coordinates
−	|-
−	| Base 2
−	|Geometry
−	|SIGMATOP
−	|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
	|		|
	|		|
	|		|
−	|}
−
−	=== Module BoxDif===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleBoxDif.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|WaterQuality
−	! scope="col" |Keyword	+	|TFCONST1
−	! scope="col" |Keyword description	+	|Phytoplankton: Constant to control temperature response curve shape
−	! scope="col" |Options	+	|
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 2
−	|BoxDif
−	|OUTPUT_FILE
−	|Output file location
	|		|
	|		|
−	|-
−	| Base 2
−	|BoxDif
−	|TYPE
−	|Coordinate Type
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|BoxDif	+	|WaterQuality
−	|WRITE_BOXES	+	|TFCONST2
−	|Option to write boxes output file	+	|Phytoplankton: Constant to control temperature response curve shape
	|		|
	|		|
Line 4,171:		Line 4,311:
	|		|
	|		|
−	|}
−
−	=== Module FillMatrix===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleFillMatrix.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|WaterQuality
−	! scope="col" |Keyword	+	|TFCONST3
−	! scope="col" |Keyword description	+	|Phytoplankton: Constant to control temperature response curve shape
−	! scope="col" |Options	+	|
−	! scope="col" |Option description	+	|
−	! scope="col" |Default Value	+	|
−	! scope="col" |Units	+	|
−	! scope="col" |Type	+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|BOXES_VALUES	+	|TFCONST4
−	|Sequence of values for each box starting from box 1.	+	|Phytoplankton: Constant to control temperature response curve shape
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|CoefA	+	|TFMAX
−	|Coeficient to compute analytical profile.	+	|Phytoplankton: Maximum temperature tolerable for growth
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|CoefB	+	|TFMIN
−	|Coeficient to compute analytical profile	+	|Phytoplankton: Minimum  temperature tolerable for growth
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|DATA_COLUMN	+	|TMINNR
−	|DATA_COLUMN is the number of the relevant column in the time series file.	+	|Nitrogen: DONnr mineralization temperature coefficient
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|DEFAULTVALUE	+	|TMINR
−	|Default value when INITIALIZATION_METHOD is used.	+	|Nitrogen: DONr mineralization temperature coefficient
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|FillMatrix
−	|DEPTH_PROFILE
−	|Sequence of depth values. Used with PROFILE option.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	| rowspan="4" | FILE_IN_TIME	+	|TNITCOEF
−	| rowspan="4" | Defines the kind of reading operation performed in time to modify the field	+	|Nitrogen: Nitrification temperature coefficient
−	|NONE	+	|
−	|Matrix is not modified from reading values from file	+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|HDF	+	|TOPTBMAX
−	|Reads data from an HDF5 file. There are restrictions regarding file format:	+	|Bacteria: Maximum temperature of the optimal interval for growth
−	1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid.	+	|
−	2) In the Grid folder it is required to have the data sets: "Bathymetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints".	+	|
−	3) The name of the fields must be recognised by MOHID (see list of supported names)	+	|
−	4) Time data set must contain as many instants as the field data sets	+	|
−	5) Time data set must also contain dates for a period of the same or greater duration of the simulation.	+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|PROFILE_TIME_SERIE	+	|TOPTBMIN
−	|Read solution from various profiles in time	+	|Bacteria: Minimum temperature of the optimal interval for growth
−	|-	+	|
−	| Base 2
−	|FillMatrix
−	|TIMESERIE
−	|The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN.
−	|-
−	| Base 2
−	|FillMatrix
−	|FILENAME
−	|Path to the file containing imposed data
	|		|
	|		|
−	|-
−	| Base 2
−	|FillMatrix
−	|FILENAME_DEFAULT
−	|Path to the file containing data for initialization of default value.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|HDF_FIELD_NAME	+	|TOPTFMAX
−	|HDF5 group name	+	|Phytoplankton: Maximum temperature of the optimal interval for photosyntesis
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|FillMatrix
−	|INITIALIZATION_DEFAULT
−	|Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	| rowspan="9" | INITIALIZATION_METHOD	+	|TOPTFMIN
−	| rowspan="9" | Initial condition data input method.	+	|Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis
−	|ANALYTIC PROFILE	+	|
−	|Initialization made by an analytical vertical profile.	+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|ASCII_FILE	+	|TOPTZMAX
−	|Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.	+	|Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth
−	If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.	+	|
−	|-	+	|
−	| Base 2	+	|
−	|FillMatrix
−	|BOXES
−	|Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
−	|-
−	| Base 2
−	|FillMatrix
−	|CONSTANT
−	|Constant value for all domain.
−	|-
−	| Base 2
−	|FillMatrix
−	|HDF
−	|Reads initial field from a HDF file. Field is interpolated in time if necessary.
−	|-
−	| Base 2
−	|FillMatrix
−	|LAYERS
−	|Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword.
−	|-
−	| Base 2
−	|FillMatrix
−	|PROFILE
−	|Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
−	|-
−	| Base 2
−	|FillMatrix
−	|PROFILE_TIMESERIE
−	|Read initial field from various profiles.
−	|-
−	| Base 2
−	|FillMatrix
−	|TIMESERIE
−	|Reads initial values from a time series file. If necessary the initial value is interpolated in time.
−	|-
−	| Base 2
−	|FillMatrix
−	|LAYERS_VALUES
−	|Sequence of values for each layer starting from the bottom layer.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|MULTIPLYING_FACTOR	+	|TOPTZMIN
−	|Data field multiplying factor. HDF5 only.	+	|Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|FillMatrix
−	|NDEPTHS
−	|Number of values that the define the profile.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	| rowspan="2" | PROFILE_TYPE	+	|TPPARTMINCOEF
−	| rowspan="2" | Type of analytical profile	+	|Phosphorus: POP decomposition temperature coefficient
−	|EXPONENTIAL	+	|
−	|Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)	+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| Base 1
−	|FillMatrix	+	|WaterQuality
−	|LINEAR	+	|TZCONST1
−	|Profile has a linear format, given by the following expression:	+	|Zooplankton: Constant to control temperature response curve shape
−	Value = DefaultValue + CoefA * CellDepth / CoefB
−	|-
−	| Base 2
−	|FillMatrix
−	|PROFILE_VALUES
−	|Sequence of values that constitute the profile.
	|		|
	|		|
Line 4,375:		Line 4,461:
	|		|
	|		|
−	|}
−
−	=== Module Geometry===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|WaterQuality
−	! scope="col" |Keyword	+	|TZCONST2
−	! scope="col" |Keyword description	+	|Zooplankton: Constant to control temperature response curve shape
−	! scope="col" |Options	+	|
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 2
−	|Geometry
−	|DISPLACEMENT_LIMIT
−	|the maximum displacement that the model allow cell faces to move vertically in meters
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|DOMAINDEPTH
−	|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|EMPTY_TOP_LAYERS	+	|TZCONST3
−	|Number of empty layers counting from top	+	|Zooplankton: Constant to control temperature response curve shape
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|EQUIDISTANT
−	|Thickness of layers admitting that all the layers have the same thickness
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	| rowspan="2" |FACES_OPTION	+	|TZCONST4
−	| rowspan="2" |Methodology to compute areas between cells	+	|Zooplankton: Constant to control temperature response curve shape
−	|2
−	|Average thickness of the adjacent water columns (advised option)
−	|-
−	| Base 2
−	|Geometry
−	|3
−	|Minimum thickness of the adjacent water columns (advanced user option)
−	|-
−	| Base 2
−	|Geometry
−	|GRIDMOVEMENTDUMP
	|		|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|ID
−	|Domain ID
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|IMPER_COEF_U	+	|TZMAX
−	|U Coefficient to compute faces areas in U points	+	|Zooplankton: Maximum temperature tolerable for growth
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|IMPER_COEF_V
−	|V Coefficient to compute faces areas in V points
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|IMPER_COEFX_U	+	|TZMIN
−	|X_U Coefficient to compute faces areas in U points	+	|Zooplankton: Minimum temperature tolerable for growth
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|IMPER_COEFX_V
−	|X_V Coefficient to compute faces areas in V points
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|IMPERMEABILITY	+	|ZDISSDON
−	|Consider impermeable cell faces	+	|Zooplankton: Dissolved organic fraction in excretions
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	| rowspan="2" |INITIALIZATION_METHOD
−	| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
−	|CARTESIAN
−	|Cartesian type coordinates
−	|-
−	| Base 2
−	|Geometry
−	|SIGMA
−	|Sigma type coordinates
−	|-
−	| Base 2
−	|Geometry
−	|LAGRANGIAN
−	|Indicates that the defined domain can evolve in size as a lagrangian domain
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|LAYERS	+	|ZEXCCONS
−	|Number of layers	+	|Zooplankton: Excretion constant for zooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|LAYERTHICKNESS	+	|ZEXCFAC
−	|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers	+	|Zooplankton: Excretion Factor
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|MIN_TOP_THICKNESS	+	|ZINGMAX
−	|minimum thickness of colapsing cells of the Harmonic domain	+	|Zooplankton: Maximun ingestion rate
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|MINEVOLVELAYERTHICKNESS	+	|ZOCILASS
−	|coeficient which indicates how much a Lagrangian layer	+	|Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|MINIMUMDEPTH	+	|ZOCRATIO
−	|water column thickness below which the cell is considered uncovered	+	|Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|MININITIALLAYERTHICKNESS
−	|minimal thickness of the bottom cells
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	|TOLERANCEDEPTH	+	|ZOO
−	|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate	+	|Zooplankton: Processes Simulation
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Geometry
−	|TOTALTHICKNESS
−	|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|Geometry	+	|WaterQuality
−	| rowspan="8" |TYPE	+	|ZOOEFFCAPCIL
−	| rowspan="8" |Type of vertical coordinate of the domain	+	|Zooplankton: Capture efficiency of microzoolankton
−	|CARTESIAN	+	|
−	|Cartesian coordinates	+	|
−	|-
−	| Base 2
−	|Geometry
−	|CARTESIANTOP
−	|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
−	|-
−	| Base 2
−	|Geometry
−	|FIXSEDIMENT
−	|Fixed Sediment coordinates
−	|-
−	| Base 2
−	|Geometry
−	|FIXSPACING
−	|Fixed Spacing coordinates - used to study flows close to the bottom
−	|-
−	| Base 2
−	|Geometry
−	|HARMONIC
−	|Harmonic coordinates - the horizontal faces close to the surface
−	expand and collapse depending on the variation of the surface elevation. This
−	coordinate was implemented in the geometry module to simulate reservoirs.
−	|-
−	| Base 2
−	|Geometry
−	|LAGRANGIAN
−	|Lagrangian coordinates - moves the upper and
−	lower faces with the vertical flow velocity.
−	|-
−	| Base 2
−	|Geometry
−	|SIGMA
−	|Sigma coordinates
−	|-
−	| Base 2
−	|Geometry
−	|SIGMATOP
−	|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
	|		|
	|		|
	|		|
−	|}
−
−	=== Module GridData===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGridData.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|WaterQuality
−	! scope="col" |Keyword	+	|ZOOEFFCAPHY
−	! scope="col" |Keyword description	+	|Zooplankton: Capture efficiency of phytoplankton
−	! scope="col" |Options	+	|
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 2
−	|GridData
−	|EVOLUTION
−	|Gets if the bathymetry can change in time
	|		|
	|		|
−	|-
−	| Base 2
−	|GridData
−	|EVOLUTION_FILE
−	|Path to file that describes the time evolution.
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|GridData	+	|WaterQuality
−	|FILL_VALUE	+	|ZOOPREYMIN
−	|Default value for points with no data	+	|Zooplankton: Minimum prey concentration for grazing
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|GridData
−	|PROPERTY_NAME
−	|Name of the property that will change in time
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|GridData	+	|WaterQuality
−	|TYPE_ZUV	+	|ZOPHYASS
−	|Matrix Types (Centered in Z, U or V)	+	|Zooplankton: Assimilation coefficient of flagellates by mesozooplankton
	|		|
	|		|
Line 4,655:		Line 4,621:
	|		|
	|		|
−	|}
−
−	=== Module HorizontalGrid===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleHorizontalGrid.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 1
−	! scope="col" |Module	+	|WaterQuality
−	! scope="col" |Keyword	+	|ZPREDMOR
−	! scope="col" |Keyword description	+	|Zooplankton:  Predatory mortality rate (predation by higher trophic levels)
−	! scope="col" |Options	+	|
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Base 2
−	|HorizontalGrid
−	|CONSTANT_SPACING_X
−	|Check if the spacing in X is constant
	|		|
	|		|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|CONSTANT_SPACING_Y
−	|Check if constant Spacing in y is used
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|HorizontalGrid	+	|WaterQuality
−	|COORD_TIP	+	|ZRATIONC
−	|Coordinate type of grid	+	|Zooplankton: Nitrogen/Carbon Ratio
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|DX
−	|Grid spacing dx
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|HorizontalGrid	+	|WaterQuality
−	|DY	+	|ZRATIOPC
−	|Gets DY spacing	+	|Zooplankton: Phosphorus/Carbon ratio
	|		|
	|		|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|GRID_ANGLE
−	|Grid angle with north
	|		|
−	|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|ILB_IUB
−	|minimum and maximum i in grid
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|HorizontalGrid	+	|WaterQuality
−	|JLB_JUB	+	|ZREFRESP
−	|minimum and maximum J in grid	+	|Zooplankton: Carbon consumption rate by respiration
	|		|
−	|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|LATITUDE
−	|Latitude of grid
	|		|
	|		|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|LONGITUDE
−	|Longitude of grid
	|		|
	|		|
	|-		|-
−	| Base 2	+	| Base 1
−	|HorizontalGrid	+	|WaterQuality
−	|ORIGIN	+	|ZSOLEXCR
−	|X and Y origin of grid	+	|Zooplankton: Soluble inorganic fraction in excretions
−	|
−	|
−	|-
−	| Base 2
−	|HorizontalGrid
−	|ZONE
−	|UTM zone of coordinate
	|		|
	|		|
Line 4,759:		Line 4,673:
	|}		|}
−	=== Module Interpolation===	+	==MOHID Base 2==
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleInterpolation.F90 Source Code]	+
		+	=== Module Atmosphere===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleAtmosphere.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 4,774:		Line 4,690:
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|EXTRAPOLATE_2D	+	|BOX_TIME_SERIE
		+	|Output of property values in time series files, integrated in boxes.
		+	|
		+	|
	|		|
	|		|
Line 4,781:		Line 4,700:
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|EXTRAPOLATE_PROFILE	+	|DATA_COLUMN
−	|Check if the user wants to extrapolate in the vertical	+	|Number of column in the time series file.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|IWD_N	+	|FILENAME
−	|Coefficient use in the inverse weight interpolation	+	|Path to the file with the time series.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|KERNEL_TYPE	+	|IRRIGATION
−	|Type of kernel used in the convolution interpolations	+	|Property added by irrigation
−	|Exponential	+	|
		+	|
		+	|
		+	|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|KERNEL_TYPE	+	|NO_INTERPOLATION
−	|Type of kernel used in the convolution interpolations	+	|This keyword is deprecated. Use accumulated values use instead.
−	|Gaussian	+	|
		+	|
		+	|
		+	|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|MAX_DISTANCE	+	|ACCUMULATE_VALUES
−	|Max distance for points to be consider in the inverse weight interpolation	+	|Use mm with ACCUMULATE_VALUES = 1.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|MAX_ITERATIONS	+	|USE_ORIGINAL_VALUES
−	|Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.	+	|use a FLUX (ex. mm/hour) with USE_ORIGINAL_VALUES = 1.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	| rowspan="6" |METHODOLOGY	+	|OUTPUT_HDF
−	| rowspan="6" |The methodology used in the interpolation process	+	|Output of property values in HDF files.
−	|1	+	|
−	|Conservative convolution	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|2	+	|OUTPUT_TIME
−	|NonConservative convolution	+	|Output instants of HDF5 file.
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
−	| Base 2	+	| rowspan="2" |Base 2
−	|Interpolation	+	| rowspan="2" |Atmosphere
−	|3	+	| rowspan="2" | RADIATION_METHOD
−	|Triangulation	+	| rowspan="2" | Method to compute solar radiation
		+	|1
		+	|Climatologic solar radiation algorithm
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
	|-		|-
−	| Base 2	+	|2
−	|Interpolation	+	|CEQUALW2 solar radiation algorithm
−	|4
−	|Bilinear
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|5	+	|RANDOM_COMPONENT
−	|Spline 2D	+	|Random component of property.
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|6	+	|STATISTICS
−	|Inverse weight	+	|Choose to compute the statistics of this property
−	|-	+	|
−	| Base 2
−	|Interpolation
−	|N_DIM
−	|The number of dimensions of the field to interpolate
	|		|
	|		|
−	|-
−	| Base 2
−	|Interpolation
−	|N_GROUPS
−	|Number of groups generated for each dimension in the data-oriented convolution.
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	| rowspan="3" |NC_TYPE	+	|STATISTICS_FILE
−	| rowspan="3" |Checks what class of NonConservative convolution process to use	+	|Path to the file with the statistics definition for this property.
−	|1	+	|
−	|User defined kernel for the NonConservative convolution
−	|-
−	| Base 2
−	|Interpolation
−	|2
−	|Smoothes the field using the PHI value
−	|-
−	| Base 2
−	|Interpolation
−	|3
−	|Data
−	|-
−	| Base 2
−	|Interpolation
−	|PHI
−	|Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
	|		|
	|		|
−	|-
−	| Base 2
−	|Interpolation
−	|POLI_DEGREE_VERT
−	|The order of the polynomial use to interpolate in the vertical
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|SAMPLE_SIZE	+	|TIME_SERIE
−	|Number of observations needed for the logistic regression in the data-oriented convolution.	+	|Output of property values in time series files.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Interpolation	+	|Atmosphere
−	|TYPE_ZUV	+	|TIME_SERIE_LOCATION
−	|Where points are defined in the cell (Z - center; U - Face U; V : Face V)	+	|Path to the file that has the time series location characteristics.
	|		|
	|		|
Line 4,917:		Line 4,843:
	|}		|}
−	=== Module Statistic===	+	=== Module Geometry===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleStatistic.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 4,932:		Line 4,858:
	|-		|-
	| Base 2		| Base 2
−	|Statistic	+	|Geometry
−	|DAILY_STATISTIC	+	|DISPLACEMENT_LIMIT
−	|Performs daily integration of statistic values	+	|the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1)
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Statistic
−	|GEOMETRIC_MEAN
−	|Performs geometric mean calculation for non negative parameters
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Statistic	+	|Geometry
−	|GLOBAL_STATISTIC	+	|DOMAINDEPTH
−	|Performs statistic calculation of every timestep	+	|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Statistic
−	|LAYER_DEFINITION
−	|Layer definition
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Statistic	+	|Geometry
−	|MAX_DEPTH	+	|EMPTY_TOP_LAYERS
−	|Max depth of layer	+	|Number of empty layers counting from top
		+	|
	|		|
	|		|
−	|-
−	| Base 2
−	|Statistic
−	|MAX_LAYER
−	|Max layer k index
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Statistic	+	|Geometry
−	|METHOD_STATISTIC	+	|EQUIDISTANT
−	|Way to perform the statistics (full matrix, layers, etc)	+	|Thickness of layers admitting that all the layers have the same thickness
−	|
	|		|
−	|-
−	| Base 2
−	|Statistic
−	|MIN_DEPTH
−	|Minimum depth of layer
	|		|
	|		|
−	|-
−	| Base 2
−	|Statistic
−	|MIN_LAYER
−	|Layer lower index start
	|		|
	|		|
		+	|-
		+	| rowspan="2" |Base 2
		+	| rowspan="2" |Geometry
		+	| rowspan="2" |FACES_OPTION
		+	| rowspan="2" |Methodology to compute areas between cells
		+	|2
		+	|Average thickness of the adjacent water columns (advised option)
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|3
		+	|Minimum thickness of the adjacent water columns (advanced user option)
	|-		|-
	| Base 2		| Base 2
−	|Statistic	+	|Geometry
−	|MONTHLY_STATISTIC	+	|GRIDMOVEMENTDUMP
−	|Performs monthly integration of statistic values	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Base 2		| Base 2
−	|Statistic	+	|Geometry
−	|PERCENTILE	+	|ID
		+	|Domain ID
		+	|
		+	|
		+	|
		+	|
	|		|
		+	|-
		+	| Base 2
		+	|Geometry
		+	|IMPER_COEF_U
		+	|U Coefficient to compute faces areas in U points
	|		|
	|		|
Line 5,010:		Line 4,939:
	|		|
	|		|
−	|}
−
−	==MOHID Land==
−
−	=== Module Runoff ===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunOff.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 2
−	! scope="col" |Module	+	|Geometry
−	! scope="col" |Keyword	+	|IMPER_COEF_V
−	! scope="col" |Keyword description	+	|V Coefficient to compute faces areas in V points
−	! scope="col" |Options	+	|
−	! scope="col" |Option description	+	|
−	! scope="col" |Default Value	+	|
−	! scope="col" |Units	+	|
−	! scope="col" |Type	+	|
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|ADJUST_SLOPE	+	|IMPER_COEFX_U
−	|Slope correction	+	|X_U Coefficient to compute faces areas in U points
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	| rowspan="3" |HYDRODYNAMIC_APROX
−	| rowspan="3" |The overland flow routing method.
−	|1
−	|Kinematic Wave
−	| rowspan="3" |2
−	| rowspan="3" |
−	| rowspan="3" |Int
−	|-
−	| Land
−	|Runoff
−	|2
−	|Diffusion Wave
−	|-
−	| Land
−	|Runoff
−	|3
−	|Dynamic Wave
−	|-
−	| Land
−	|Runoff
−	|MIN_WATER_COLUMN
−	|Minimum water column for overland flow
	|		|
	|		|
−	|0.001
−	|m
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|STABILIZE	+	|IMPER_COEFX_V
−	|Connect/disconnect stability criteria	+	|X_V Coefficient to compute faces areas in V points
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	|STABILIZE_FACTOR
−	|Fraction of cell volume allowed for volume variation in one time step
	|		|
−	|Needed if STABILIZE : 1
−	|0.1
−	|%
−	|Real
−	|-
−	| Land
−	|Runoff
−	|MIN_ITERATIONS
−	|Minimum number of internal iteration to start asking for a lower global dt
	|		|
	|		|
−	|1
	|		|
−	|Int
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|MAX_ITERATIONS	+	|IMPERMEABILITY
−	|Maximum number of internal iterations allowed for the module	+	|Consider impermeable cell faces
		+	|
	|		|
	|		|
−	|1024
	|		|
−	|Int
−	|-
−	| Land
−	|Runoff
−	|LIMIT_DT_COURANT
−	|Connect/disconnect limitation of dt by courant number
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| rowspan="2" |Base 2
−	|Runoff	+	| rowspan="2" |Geometry
−	|MAX_COURANT	+	| rowspan="2" |INITIALIZATION_METHOD
−	|Maximum value for Courant number	+	| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
		+	|CARTESIAN
		+	|Cartesian type coordinates
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|SIGMA
		+	|Sigma type coordinates
		+	|-
		+	| Base 2
		+	|Geometry
		+	|LAYERS
		+	|Number of layers
	|		|
−	|Needed if LIMIT_DT_COURANT : 1
−	|1.0
	|		|
−	|Real
−	|-
−	| Land
−	|Runoff
−	|DT_FACTOR
−	|Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise)
	|		|
	|		|
−	|1.25
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|DT_SPLIT_FACTOR	+	|LAYERTHICKNESS
−	|Factor to predict next number of iteration	+	|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers
		+	|
		+	|
	|		|
	|		|
−	|2.0
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|IMPOSE_BOUNDARY_VALUE	+	|MIN_TOP_THICKNESS
−	|Connect/disconnect imposing boundary value	+	|minimum thickness of collapsing cells of the Harmonic domain
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	|BOUNDARY_VALUE
−	|Imposed boundary value
	|		|
−	|Needed if IMPOSE_BOUNDARY_VALUE : 1
	|		|
−	|m
−	|Real
−	|-
−	| Land
−	|Runoff
−	|SIMPLE_CHANNEL_FLOW
	|		|
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|ROUTE_D4	+	|MINEVOLVELAYERTHICKNESS
−	|Connect/disconnect route of water in 8 direction if accumulation cells exist	+	|Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1)
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	|ROUTE_D4_ON_DN
−	|Connect/disconnect route of water in 8 direction on cells that have drainage network
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	|ADVECTION
−	|Connect/disconnect advection
−	|0/1
−	|Inactive/Active
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	|MIN_WATER_COLUMN_ADVECTION
−	|Minimum water column for advection
	|		|
−	|Needed if ADVECTION : 1
−	|0.0
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	| rowspan="2" |WATER_COLUMN_FACE	+	|MINIMUMDEPTH
−	| rowspan="2" |Method for computing water column in the face	+	|water column thickness below which the cell is considered uncovered
−	|1	+	|
−	|Using maximum level and maximum bottom
−	| rowspan="2" |1
−	| rowspan="2" |
−	| rowspan="2" |Int
−	|-
−	| Land
−	|Runoff
−	|2
−	|Using maximum level and average of bottom
−	|-
−	| Land
−	|Runoff
−	|HYDRAULIC_RADIUS_MARGINS
	|		|
−	|0/1
−	|Inactive/Active
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|Runoff
−	|IMPOSE_MAX_VELOCITY
	|		|
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|MAX_VELOCITY	+	|MININITIALLAYERTHICKNESS
		+	|minimal thickness of the bottom cells
		+	|
		+	|
	|		|
	|		|
−	|Needed if IMPOSE_MAX_VELOCITY : 1
−	|0.1
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|DYNAMIC_ADJUST_MANNING	+	|REMOVE_LAND_BOTTOM_LAYERS
		+	|Remove bottom layers with no water cells
		+	|
	|		|
−	|0/1
−	|Inactive/Active
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|Runoff	+	|Geometry
−	|ALLOW_BOUNDARY_INFLOW	+	|TOLERANCEDEPTH
−	|Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall	+	|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|0	+	|
		+	|
	|		|
−	|Boolean
−	|}
−
−	=== Module Basin ===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleBasin.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 2
−	! scope="col" |Module	+	|Geometry
−	! scope="col" |Keyword	+	|TOTALTHICKNESS
−	! scope="col" |Keyword description	+	|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
−	! scope="col" |Options	+	|
−	! scope="col" |Option description	+	|
−	! scope="col" |Default Value	+	|
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Land
−	|Basin
−	|ATMOSPHERE
−	|Use Module Atmosphere
−	|0/1
−	|Inactive/Active
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|Basin
−	|DRAINAGE_NET
−	|Use Module DrainageNetork
−	|0/1
−	|Inactive/Active
−	|1
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| rowspan="8" |Base 2
−	|Basin	+	| rowspan="8" |Geometry
−	|POROUS_MEDIA	+	| rowspan="8" |TYPE
−	|Use Module Porous Media	+	| rowspan="8" |Type of vertical coordinate of the domain
−	|0/1	+	|CARTESIAN
−	|Inactive/Active	+	|Cartesian coordinates
−	|1	+	| rowspan="8" |
−	|	+	| rowspan="8" |
−	|Boolean	+	| rowspan="8" |
		+	|-
		+	|CARTESIANTOP
		+	|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
		+	|-
		+	|FIXSEDIMENT
		+	|Fixed Sediment coordinates
		+	|-
		+	|FIXSPACING
		+	|Fixed Spacing coordinates - used to study flows close to the bottom
		+	|-
		+	|HARMONIC
		+	|Harmonic coordinates - the horizontal faces close to the surface
		+	expand and collapse depending on the variation of the surface elevation. This
		+	coordinate was implemented in the geometry module to simulate reservoirs.
		+	|-
		+	|LAGRANGIAN
		+	|Lagrangian coordinates - moves the upper and
		+	lower faces with the vertical flow velocity.
		+	|-
		+	|SIGMA
		+	|Sigma coordinates
		+	|-
		+	|SIGMATOP
		+	|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
		+	|}
		+
		+	=== Module BoxDif===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleBoxDif.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Land	+	! scope="col" |Project
−	|Basin	+	! scope="col" |Module
−	|RUN_OFF	+	! scope="col" |Keyword
−	|Use Module RunOff	+	! scope="col" |Keyword description
−	|0/1	+	! scope="col" |Options
−	|Inactive/Active	+	! scope="col" |Option description
−	|1	+	! scope="col" |Default Value
−	|	+	! scope="col" |Units
−	|Boolean	+	! scope="col" |Type
	|-		|-
−	| Land	+	| Base 2
−	|Basin	+	|BoxDif
−	|	+	|OUTPUT_FILE
−	|	+	|Output file location
	|		|
	|		|
Line 5,348:		Line 5,140:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|Basin	+	|BoxDif
		+	|TYPE
		+	|Coordinate Type
	|		|
	|		|
	|		|
	|		|
		+	|
		+	|-
		+	| Base 2
		+	|BoxDif
		+	|WRITE_BOXES
		+	|Option to write boxes output file
	|		|
	|		|
	|		|
		+	|
		+	|
		+	|}
		+
		+	=== Module FillMatrix===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleFillMatrix.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Land	+	! scope="col" |Project
−	|Basin	+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Base 2
		+	|FillMatrix
		+	|BOXES_VALUES
		+	|Sequence of values for each box starting from box 1.
		+	|
	|		|
	|		|
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|FillMatrix
		+	|CoefA
		+	|Coeficient to compute analytical profile.
	|		|
	|		|
	|		|
−	|-
−	| Land
−	|Basin
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|FillMatrix
		+	|CoefB
		+	|Coeficient to compute analytical profile
	|		|
	|		|
Line 5,378:		Line 5,205:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|Basin	+	|FillMatrix
		+	|DATA_COLUMN
		+	|DATA_COLUMN is the number of the relevant column in the time series file.
		+	|
	|		|
	|		|
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|FillMatrix
		+	|DEFAULTVALUE
		+	|Default value when INITIALIZATION_METHOD is used.
	|		|
	|		|
	|		|
−	|-
−	| Land
−	|Basin
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|FillMatrix
		+	|DEPTH_PROFILE
		+	|Sequence of depth values. Used with PROFILE option.
	|		|
	|		|
Line 5,397:		Line 5,234:
	|		|
	|		|
−	|}
−
−	=== Module Irrigation ===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleIrrigation.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| rowspan="4" |Base 2
−	! scope="col" |Module	+	| rowspan="4" |FillMatrix
−	! scope="col" |Keyword	+	| rowspan="4" |FILE_IN_TIME
−	! scope="col" |Keyword description	+	| rowspan="4" |Defines the kind of reading operation performed in time to modify the field
−	! scope="col" |Options	+	|NONE
−	! scope="col" |Option description	+	|Matrix is not modified from reading values from file
−	! scope="col" |Default Value	+	| rowspan="4" |
−	! scope="col" |Units	+	| rowspan="4" |
−	! scope="col" |Type	+	| rowspan="4" |
		+	|-
		+	|HDF
		+	|Reads data from an HDF5 file. There are restrictions regarding file format:
		+	1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid.
		+	2) In the Grid folder it is required to have the data sets: "Bathymetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints".
		+	3) The name of the fields must be recognised by MOHID (see list of supported names)
		+	4) Time data set must contain as many instants as the field data sets
		+	5) Time data set must also contain dates for a period of the same or greater duration of the simulation.
		+	|-
		+	|PROFILE_TIME_SERIE
		+	|Read solution from various profiles in time
		+	|-
		+	|TIMESERIE
		+	|The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN.
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|ACTIVE	+	|FILENAME
		+	|Path to the file containing imposed data
		+	|
	|		|
	|		|
	|		|
−	|1
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|NAME	+	|FILENAME_DEFAULT
		+	|Path to the file containing data for initialization of default value.
	|		|
	|		|
Line 5,431:		Line 5,278:
	|		|
	|		|
−	|String
	|-		|-
−	| rowspan="3"| Land	+	| Base 2
−	| rowspan="3"|Irrigation	+	|FillMatrix
−	| rowspan="3"|METHOD	+	|HDF_FIELD_NAME
−	| rowspan="3"|	+	|HDF5 group name
−	|1	+	|
−	|Fixed Irrigation (Fixed irrigation is provided by the user)	+	|
−	| rowspan="3"|1
−	| rowspan="3"|
−	| rowspan="3"|Integer
−	|-
−	|2
−	|IrrigationBySteps
−	|-
−	|3
−	|ContinuousIrrigation
−	|-
−	| Land
−	|Irrigation
−	|SINGLE_SYSTEM
	|		|
−	|0/1
	|		|
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|HEAD_THRESHOLD	+	|INITIALIZATION_DEFAULT
		+	|Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
	|		|
	|		|
	|		|
−	| -6.0	+	|
−	|m	+	|
−	|Real	+	|-
		+	| rowspan="9" |Base 2
		+	| rowspan="9" |FillMatrix
		+	| rowspan="9" |INITIALIZATION_METHOD
		+	| rowspan="9" |Initial condition data input method.
		+	|ANALYTIC PROFILE
		+	|Initialization made by an analytical vertical profile.
		+	| rowspan="9" |
		+	| rowspan="9" |
		+	| rowspan="9" |
		+	|-
		+	|ASCII_FILE
		+	|Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.
		+	If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.
		+	|-
		+	|BOXES
		+	|Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
		+	|-
		+	|CONSTANT
		+	|Constant value for all domain.
		+	|-
		+	|HDF
		+	|Reads initial field from a HDF file. Field is interpolated in time if necessary.
		+	|-
		+	|LAYERS
		+	|Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword.
		+	|-
		+	|PROFILE
		+	|Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
		+	|-
		+	|PROFILE_TIMESERIE
		+	|Read initial field from various profiles.
		+	|-
		+	|TIMESERIE
		+	|Reads initial values from a time series file. If necessary the initial value is interpolated in time.
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|HEAD_TARGET	+	|LAYERS_VALUES
		+	|Sequence of values for each layer starting from the bottom layer.
		+	|
		+	|
	|		|
	|		|
	|		|
−	| -10.0
−	|m
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|MIN_INTERVAL_BETWEEN_EVENTS	+	|MULTIPLYING_FACTOR
−	|	+	|Data field multiplying factor. HDF5 only.
	|		|
	|		|
−	|86400.0
−	|seconds
−	|Integer
−	|-
−	| Land
−	|Irrigation
−	|MAX_CONSECUTIVE_DAYS
	|		|
	|		|
	|		|
−	|2
−	|days
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|MAX_DAILY_IRRIGATION_TIME	+	|NDEPTHS
		+	|Number of values that the define the profile.
		+	|
	|		|
	|		|
	|		|
−	|86400.0	+	|
−	|seconds	+	|-
−	|Integer	+	| rowspan="2" |Base 2
		+	| rowspan="2" |FillMatrix
		+	| rowspan="2" |PROFILE_TYPE
		+	| rowspan="2" |Type of analytical profile
		+	|EXPONENTIAL
		+	|Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|LINEAR
		+	|Profile has a linear format, given by the following expression:
		+	Value = DefaultValue + CoefA * CellDepth / CoefB
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|FillMatrix
−	|START_INSTANT_THRESHOLD	+	|PROFILE_VALUES
		+	|Sequence of values that constitute the profile.
		+	|
		+	|
		+	|
	|		|
−	|0-23
	|		|
−	|0.0	+	|}
−	|hours	+
−	|Integer	+	=== Module Geometry===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|Geometry
−	|END_INSTANT_THRESHOLD	+	|DISPLACEMENT_LIMIT
		+	|the maximum displacement that the model allow cell faces to move vertically in meters
	|		|
−	|0-23
	|		|
−	|23.0
−	|hours
−	|Integer
−	|-
−	| Land
−	|Irrigation
−	|MAX_DEPTH_TO_CHECK
	|		|
	|		|
	|		|
−	|0.2
−	|m
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|Geometry
−	|SATURATION_THRESHOLD	+	|DOMAINDEPTH
		+	|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
	|		|
−	|0-1
	|		|
−	|0.9
	|		|
−	|Real
−	|-
−	| Land
−	|Irrigation
−	|MAX_SATURATED_FRACTION
	|		|
−	|0-1
	|		|
−	|0.3	+	|-
		+	| Base 2
		+	|Geometry
		+	|EMPTY_TOP_LAYERS
		+	|Number of empty layers counting from top
		+	|
		+	|
		+	|
		+	|
	|		|
−	|Real
	|-		|-
−	| rowspan="5"| Land	+	| Base 2
−	| rowspan="5"|Irrigation	+	|Geometry
−	| rowspan="5"|GEAR_TYPE	+	|EQUIDISTANT
−	| rowspan="5"|	+	|Thickness of layers admitting that all the layers have the same thickness
−	|1	+	|
−	|CenterPivot	+	|
−	| rowspan="5"|1	+	|
−	| rowspan="5"|	+	|
−	| rowspan="5"|Integer	+	|
	|-		|-
		+	| rowspan="2" |Base 2
		+	| rowspan="2" |Geometry
		+	| rowspan="2" |FACES_OPTION
		+	| rowspan="2" |Methodology to compute areas between cells
	|2		|2
−	|LinearPivot	+	|Average thickness of the adjacent water columns (advised option)
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
	|-		|-
	|3		|3
−	|Sprinkler	+	|Minimum thickness of the adjacent water columns (advanced user option)
	|-		|-
−	|4	+	| Base 2
−	|GravitySystem	+	|Geometry
−	|-	+	|GRIDMOVEMENTDUMP
−	|5
−	|DripIrrigation
−	|-
−	| Land
−	|Irrigation
−	|GEAR_EFFICIENCY
	|		|
	|		|
	|		|
−	|0.85
−	|
−	|Real
−	|-
−	| Land
−	|Irrigation
−	|GEAR_DEBIT
	|		|
	|		|
	|		|
−	|10.0
−	|mm
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|Geometry
−	|GEAR_MIN_VEL	+	|ID
		+	|Domain ID
		+	|
	|		|
	|		|
	|		|
−	|0.2
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|Geometry
−	|GEAR_MAX_VEL	+	|IMPER_COEF_U
		+	|U Coefficient to compute faces areas in U points
		+	|
	|		|
	|		|
	|		|
−	|4.0
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|Geometry
−	|START_TIME	+	|IMPER_COEF_V
−	|	+	|V Coefficient to compute faces areas in V points
	|		|
	|		|
Line 5,631:		Line 5,496:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|Irrigation	+	|Geometry
−	|STOP_TIME	+	|IMPER_COEFX_U
		+	|X_U Coefficient to compute faces areas in U points
	|		|
	|		|
Line 5,639:		Line 5,505:
	|		|
	|		|
−	|
−	|}
−
−	=== Module ModulePorousMedia ===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMedia.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Base 2
−	! scope="col" |Module	+	|Geometry
−	! scope="col" |Keyword	+	|IMPER_COEFX_V
−	! scope="col" |Keyword description	+	|X_V Coefficient to compute faces areas in V points
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−
−	|-
−	| Land
−	|PorousMedia
−	|ALPHA
	|		|
	|		|
Line 5,665:		Line 5,515:
	|		|
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|BOTTOM_FILE	+	|IMPERMEABILITY
−	|Path to Bottom Topography File	+	|Consider impermeable cell faces
	|		|
	|		|
−	| -
	|		|
−	|String
−	|-
−	| Land
−	|PorousMedia
−	|CALC_DRAINAGE_FLUX
−	|
−	|0/1
	|		|
−	|1
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| rowspan="2" |Base 2
−	|PorousMedia	+	| rowspan="2" |Geometry
−	|CALC_HORIZONTAL	+	| rowspan="2" |INITIALIZATION_METHOD
−	|	+	| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
−	|0/1	+	|CARTESIAN
		+	|Cartesian type coordinates
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|SIGMA
		+	|Sigma type coordinates
		+	|-
		+	| Base 2
		+	|Geometry
		+	|LAGRANGIAN
		+	|Indicates that the defined domain can evolve in size as a lagrangian domain
	|		|
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|PorousMedia
−	|COMPUTE_HYDRO_PRESSURE
	|		|
−	|0/1
	|		|
−	|1
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|COMPUTE_SOIL_FIELD	+	|LAYERS
		+	|Number of layers
		+	|
		+	|
	|		|
−	|0/1
	|		|
−	|0
	|		|
−	|Boolean
	|-		|-
−	|rowspan=5| Land	+	| Base 2
−	|rowspan=5|PorousMedia	+	|Geometry
−	|rowspan=5|CONDUTIVITYFACE	+	|LAYERTHICKNESS
−	|rowspan=5|Way to interpolate conducivity face	+	|If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers
−	|1
−	|Average
−	|rowspan=5| 1
−	|rowspan=5| -
−	|rowspan=5| Integer
−	|-
−	|2
−	|Maximum
−	|-
−	|3
−	|Minimum
−	|-
−	|4
−	|Weigthed
−	|-
−	|5
−	|Geometric Average
−	|-
−	| Land
−	|PorousMedia
−	|CONTINUOUS_OUTPUT_FILE
−	|Writes "famous" iter.log
−	|0/1
	|		|
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|PorousMedia
−	|CUT_OFF_THETA_HIGH
−	|Set Theta = ThetaS when Theta > ThetaS
	|		|
	|		|
−	|1e-15
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|CUT_OFF_THETA_LOW	+	|MIN_TOP_THICKNESS
−	|Disables calculation when Theta is near ThetaR	+	|minimum thickness of colapsing cells of the Harmonic domain
	|		|
	|		|
−	|1e-6
	|		|
−	|Real
−	|-
−	| Land
−	|PorousMedia
−	|DECREASE_DT
−	|Decrease of DT when iter > MAX_ITER
	|		|
	|		|
−	|0.70
−	|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|DN_LINK	+	|MINEVOLVELAYERTHICKNESS
−	|	+	|coeficient which indicates how much a Lagrangian layer
	|		|
	|		|
Line 5,789:		Line 5,589:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|DN_LINK_AREA_METHOD	+	|MINIMUMDEPTH
		+	|water column thickness below which the cell is considered uncovered
	|		|
	|		|
Line 5,797:		Line 5,598:
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|FC_K_FACTOR	+	|MININITIALLAYERTHICKNESS
		+	|minimal thickness of the bottom cells
	|		|
	|		|
Line 5,807:		Line 5,608:
	|		|
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|GW_SAT_FACTOR	+	|TOLERANCEDEPTH
		+	|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
		+	|
	|		|
	|		|
	|		|
−	|0.99
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|Geometry
−	|HEAD_LIMIT	+	|TOTALTHICKNESS
		+	|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
	|		|
	|		|
−	|
−	| -100.0
−	|m
−	|Real
−	|-
−	| Land
−	|PorousMedia
−	|HORIZONTAL_K_FACTOR
−	|Factor for Horizontal Conductivity = Kh / Kv
	|		|
	|		|
−	|1
	|		|
−	|Real
	|-		|-
−	| Land	+	| rowspan="8" |Base 2
−	|PorousMedia	+	| rowspan="8" |Geometry
−	|ID	+	| rowspan="8" |TYPE
		+	| rowspan="8" |Type of vertical coordinate of the domain
		+	|CARTESIAN
		+	|Cartesian coordinates
		+	| rowspan="8" |
		+	| rowspan="8" |
		+	| rowspan="8" |
		+	|-
		+	|CARTESIANTOP
		+	|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
		+	|-
		+	|FIXSEDIMENT
		+	|Fixed Sediment coordinates
		+	|-
		+	|FIXSPACING
		+	|Fixed Spacing coordinates - used to study flows close to the bottom
		+	|-
		+	|HARMONIC
		+	|Harmonic coordinates - the horizontal faces close to the surface
		+	expand and collapse depending on the variation of the surface elevation. This
		+	coordinate was implemented in the geometry module to simulate reservoirs.
		+	|-
		+	|LAGRANGIAN
		+	|Lagrangian coordinates - moves the upper and
		+	lower faces with the vertical flow velocity.
		+	|-
		+	|SIGMA
		+	|Sigma coordinates
		+	|-
		+	|SIGMATOP
		+	|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
		+	|}
		+
		+	=== Module GridData===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGridData.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Base 2
		+	|GridData
		+	|EVOLUTION
		+	|Gets if the bathymetry can change in time
	|		|
	|		|
Line 5,847:		Line 5,687:
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|GridData
−	|IGNORE_WATER_COLUMN_ON_EVAP	+	|EVOLUTION_FILE
		+	|Path to file that describes the time evolution.
		+	|
		+	|
	|		|
−	|0/1
	|		|
−	|1
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|GridData
−	|IMPOSE_BOUNDARY_VALUE	+	|FILL_VALUE
		+	|Default value for points with no data
		+	|
		+	|
	|		|
−	|0/1
	|		|
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|GridData
−	|IMPOSE_BOUNDARY_BOTTOM	+	|PROPERTY_NAME
		+	|Name of the property that will change in time
		+	|
		+	|
	|		|
−	|0/1
	|		|
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|GridData
−	|IMPOSE_BOUNDARY_BOTTOM_CONDITION	+	|TYPE_ZUV
		+	|Matrix Types (Centered in Z, U or V)
	|		|
	|		|
	|		|
	|		|
		+	|
		+	|}
		+
		+	=== Module HorizontalGrid===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleHorizontalGrid.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Base 2
		+	|HorizontalGrid
		+	|CONSTANT_SPACING_X
		+	|Check if the spacing in X is constant
	|		|
	|		|
−	|-
−	| Land
−	|PorousMedia
−	|INCREASE_DT
−	|Increase of DT when iter < MIN_ITER
	|		|
	|		|
−	|1.25
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|INFIL_CONDUCTIVITY	+	|CONSTANT_SPACING_Y
−	|	+	|Check if constant Spacing in y is used
	|		|
	|		|
Line 5,909:		Line 5,763:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|L_FIT	+	|COORD_TIP
		+	|Coordinate type of grid
	|		|
	|		|
Line 5,917:		Line 5,772:
	|		|
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|LIMIT_EVAP_HEAD	+	|DX
		+	|Grid spacing dx
		+	|
		+	|
	|		|
−	|0/1
	|		|
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|LIMIT_EVAP_WATER_VEL	+	|DY
		+	|Gets DY spacing
		+	|
		+	|
	|		|
−	|0/1
	|		|
−	|0
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|MAX_DTM_FOR_BOUNDARY	+	|GRID_ANGLE
		+	|Grid angle with north
	|		|
	|		|
Line 5,947:		Line 5,802:
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|HorizontalGrid
		+	|ILB_IUB
		+	|minimum and maximum i in grid
	|		|
−	|-
−	| Land
−	|PorousMedia
−	|MIN_THETAF_FOR_BOUNDARY
	|		|
	|		|
	|		|
−	|0
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|N_FIT	+	|JLB_JUB
		+	|minimum and maximum J in grid
	|		|
	|		|
Line 5,967:		Line 5,822:
	|		|
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|SAT_K	+	|LATITUDE
−	|Saturation conductivity	+	|Latitude of grid
	|		|
	|		|
	|		|
	|		|
−	|Real
−	|-
−	| Land
−	|PorousMedia
−	|START_WITH_FIELD
−	|Sets Theta initial Field Capacity
−	|0/1
−	|
−	|1
	|		|
−	|Boolean
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|STOP_ON_WRONG_DATE	+	|LONGITUDE
−	|Stops if previous run end is different from actual Start	+	|Longitude of grid
−	|0/1
	|		|
−	|1
	|		|
−	|Boolean
−	|-
−	| Land
−	|PorousMedia
−	|THETA_HYDRO_COEF
	|		|
	|		|
	|		|
−	|0.98
−	|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|THETA_R	+	|ORIGIN
−	|Residual water content	+	|X and Y origin of grid
	|		|
	|		|
	|		|
−	|
−	|Real
−	|-
−	| Land
−	|PorousMedia
−	|THETA_S
−	|Saturation water content
	|		|
	|		|
−	|
−	|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|PorousMedia	+	|HorizontalGrid
−	|THETA_TOLERANCE	+	|ZONE
−	|Converge Parameter	+	|UTM zone of coordinate
	|		|
	|		|
−	|0.001
−	|
−	|Real
−	|-
−	| Land
−	|PorousMedia
−	|VEL_HYDRO_COEF
	|		|
	|		|
	|		|
−	|1
−	|
−	|Real
	|}		|}
−	=== ModulePorousMediaProperties===	+	=== Module Interpolation===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMediaProperties.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleInterpolation.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 6,064:		Line 5,878:
	! scope="col" |Type		! scope="col" |Type
	|-		|-
−	| Land	+	| Base 2
−	|PorousMediaProperties	+	|Interpolation
−	|	+	|EXTRAPOLATE_2D
	|		|
	|		|
Line 6,074:		Line 5,888:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|PorousMediaProperties	+	|Interpolation
		+	|EXTRAPOLATE_PROFILE
		+	|Check if the user wants to extrapolate in the vertical
	|		|
	|		|
Line 6,081:		Line 5,897:
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|Interpolation
		+	|IWD_N
		+	|Coefficient use in the inverse weight interpolation
	|		|
	|		|
−	|-
−	| Land
−	|PorousMediaProperties
	|		|
	|		|
	|		|
		+	|-
		+	| Base 2
		+	|Interpolation
		+	|KERNEL_TYPE
		+	|Type of kernel used in the convolution interpolations
		+	|Exponential
	|		|
	|		|
	|		|
	|		|
−	|}	+	|-
−		+	| Base 2
−	=== ModuleReservoirs ===	+	|Interpolation
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]	+	|KERNEL_TYPE
−	{| class="wikitable"	+	|Type of kernel used in the convolution interpolations
−	|-	+	|Gaussian
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Land
−	|Reservoirs
−	|RESERVOIR_FILE
−	|Path to reservoirs properties  File
	|		|
	|		|
	|		|
	|		|
−	|String
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Interpolation
−	|DISCHARGES	+	|MAX_DISTANCE
−	|Connect or Disconnect discharges	+	|Max distance for points to be consider in the inverse weight interpolation
−	|0/1	+	|
	|		|
−	|0
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|SURFACE_FLUXES
−	|Connect or Disconnect surface fluxes
−	|0/1
	|		|
−	|0
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Interpolation
−	|BOTTOM_FLUXES	+	|MAX_ITERATIONS
−	|Connect or Disconnect bottom fluxes	+	|Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.
−	|0/1
−	|
−	|0
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|PROP_COMPUTE_METHOD
−	|Water properties concentration
−	|1/2
−	|1 instant mixing; 2 retention time full mixing
−	|1
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|CONTINUOUS
−	|Computations follow from another simulation
−	|0/1
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| rowspan="6" |Base 2
−	|Reservoirs	+	| rowspan="6" |Interpolation
−	|INITIAL_VOLUME_DEFAULT_METHOD	+	| rowspan="6" |METHODOLOGY
−	|start percentage full	+	| rowspan="6" |The methodology used in the interpolation process
−	|0/1	+	|1
		+	|Conservative convolution
		+	| rowspan="6" |
		+	| rowspan="6" |
		+	| rowspan="6" |
		+	|-
		+	|2
		+	|NonConservative convolution
		+	|-
		+	|3
		+	|Triangulation
		+	|-
		+	|4
		+	|Bilinear
		+	|-
		+	|5
		+	|Spline 2D
		+	|-
		+	|6
		+	|Inverse weight
		+	|-
		+	| Base 2
		+	|Interpolation
		+	|N_DIM
		+	|The number of dimensions of the field to interpolate
		+	|
		+	|
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Interpolation
−	|START_PERCENTAGE_FULL	+	|N_GROUPS
−	|percentage of max volume at start	+	|Number of groups generated for each dimension in the data-oriented convolution.
−	|0/100.0
	|		|
	|		|
	|		|
−	|Real
−	|-
−	| Land
−	|Reservoirs
−	|TIME_SERIE
−	|Checks if the user wants to write time series of the particle properties
−	|0/1
	|		|
	|		|
		+	|-
		+	| rowspan="3" |Base 2
		+	| rowspan="3" |Interpolation
		+	| rowspan="3" |NC_TYPE
		+	| rowspan="3" |Checks what class of NonConservative convolution process to use
		+	|1
		+	|User defined kernel for the NonConservative convolution
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|2
		+	|Smoothes the field using the PHI value
		+	|-
		+	|3
		+	|Data
		+	|-
		+	| Base 2
		+	|Interpolation
		+	|PHI
		+	|Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|TIME_SERIE_LOCATION
−	|Path to time serie locations file
	|		|
	|		|
	|		|
	|		|
−	|String	+	|-
−	|}	+	| Base 2
		+	|Interpolation
		+	|POLI_DEGREE_VERT
		+	|The order of the polynomial use to interpolate in the vertical
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Base 2
		+	|Interpolation
		+	|SAMPLE_SIZE
		+	|Number of observations needed for the logistic regression in the data-oriented convolution.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Base 2
		+	|Interpolation
		+	|TYPE_ZUV
		+	|Where points are defined in the cell (Z - center; U - Face U; V : Face V)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
−	=== Reservoir Parameters ===	+	=== Module Statistic===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleStatistic.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 6,224:		Line 6,064:
	! scope="col" |Type		! scope="col" |Type
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|ID	+	|DAILY_STATISTIC
−	|Reservoir ID	+	|Performs daily integration of statistic values
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|Name	+	|GEOMETRIC_MEAN
−	|Reservoir name	+	|Performs geometric mean calculation for non negative parameters
	|		|
	|		|
Line 6,244:		Line 6,084:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|CONSTRUCTION_YEAR	+	|GLOBAL_STATISTIC
−	|The year when the reservoir begin to operate	+	|Performs statistic calculation of every timestep
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|COORDINATES	+	|LAYER_DEFINITION
−	|Longitude and latitude geographic coordenates of the reservoir	+	|Layer definition
	|		|
	|		|
Line 6,264:		Line 6,104:
	|		|
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|GRID_I	+	|MAX_DEPTH
−	| Cell row where the reservoir is located in the GRID	+	|Max depth of layer
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|GRID_J	+	|MAX_LAYER
−	| Cell column where the reservoir is located in the GRID	+	|Max layer k index
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|DN_NODE_ID:	+	|METHOD_STATISTIC
−	|ID location of the reservoir in the Drainage Network	+	|Way to perform the statistics (full matrix, layers, etc)
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|MIN_VOLUME	+	|MIN_DEPTH
−	|minimum volume the reservoir operates	+	|Minimum depth of layer
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|MAX_VOLUME	+	|MIN_LAYER
−	|maximum volume the reservoir can operate	+	|Layer lower index start
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Real
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|OPERATION_TYPE	+	|MONTHLY_STATISTIC
−	| rowspan="5"|Type of operation for the outflow in the reservoir	+	|Performs monthly integration of statistic values
−	| 1	+	|
−	|Operation is defined by the water level and the outflow
	|		|
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|OPERATION_TYPE
−	|2
−	| Operation is defined by the water level and the outflow as a percentage of the inflow
	|		|
	|		|
−	|Integer
	|-		|-
−	| Land	+	| Base 2
−	|Reservoirs	+	|Statistic
−	|OPERATION_TYPE	+	|PERCENTILE
−	|3
−	|Operation is defined by the percentage of reservoir volume and the outflow
	|		|
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|OPERATION_TYPE
−	|4
−	|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the inflow
	|		|
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|OPERATION_TYPE
−	|5
−	|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the maximum outflow
	|		|
	|		|
−	|Integer
−	|-
−	| Land
−	|Reservoirs
−	|MIN_OUTFLOW
−	|Enviromental flow
−	|
−	|
−	|0
−	|
−	|Real
−	|-
−	| Land
−	|Reservoirs
−	|MAX_OUTFLOW
−	|Maximum outflow the reservoir can operate
−	|
−	|
−	|
−	|
−	|Real
	|}		|}
−	=== ModuleRunoffProperties===	+	==MOHID Land==
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunoffProperties.F90 Source Code]	+
		+	=== Module Runoff ===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunOff.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 6,396:		Line 6,192:
	|-		|-
	| Land		| Land
−	|RunoffProperties	+	|Runoff
−	|	+	|ADJUST_SLOPE
−	|	+	|Slope correction
		+	|0/1
		+	|Inactive/Active
		+	|1
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Runoff
		+	|ADVECTION
		+	|Connect/disconnect advection
		+	|0/1
		+	|Inactive/Active
		+	|1
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Runoff
		+	|ALLOW_BOUNDARY_INFLOW
		+	|Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall
		+	|0/1
		+	|Inactive/Active
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Runoff
		+	|BOUNDARY_VALUE
		+	|Imposed boundary value
	|		|
		+	|Needed if IMPOSE_BOUNDARY_VALUE : 1
	|		|
		+	|m
		+	|Real
	|-		|-
	| Land		| Land
−	|RunoffProperties	+	|Runoff
−	|	+	|DT_FACTOR
		+	|Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise)
	|		|
	|		|
		+	|1.25
	|		|
		+	|Real
		+	|-
		+	| Land
		+	|Runoff
		+	|DT_SPLIT_FACTOR
		+	|Factor to predict next number of iteration
	|		|
	|		|
		+	|2.0
	|		|
		+	|Real
	|-		|-
	| Land		| Land
−	|RunoffProperties	+	|Runoff
		+	|DYNAMIC_ADJUST_MANNING
	|		|
		+	|0/1
		+	|Inactive/Active
		+	|0
	|		|
−	|	+	|Boolean
−	|	+	|-
−	|	+	| rowspan="3" |Land
−	|	+	| rowspan="3" |Runoff
−	|	+	| rowspan="3" |HYDRODYNAMIC_APROX
−	|}	+	| rowspan="3" |The overland flow routing method.
−		+	|1
−	=== ModuleSnow ===	+	|Kinematic Wave
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleSnow.F90 Source Code]	+	| rowspan="3" |2
−	{| class="wikitable"	+	| rowspan="3" |
		+	| rowspan="3" |Integer
		+	|-
		+	|2
		+	|Diffusion Wave
	|-		|-
−	! scope="col" |Project	+	|3
−	! scope="col" |Module	+	|Dynamic Wave
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Land		| Land
−	|Snow	+	|Runoff
−	|	+	|HYDRAULIC_RADIUS_MARGINS
−	|
−	|
−	|
	|		|
		+	|0/1
		+	|Inactive/Active
		+	|1
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Runoff
		+	|IMPOSE_BOUNDARY_VALUE
		+	|Connect/disconnect imposing boundary value
		+	|0/1
		+	|Inactive/Active
		+	|0
	|		|
		+	|Boolean
	|-		|-
	| Land		| Land
−	|Snow	+	|Runoff
−	|	+	|IMPOSE_MAX_VELOCITY
−	|
	|		|
		+	|0/1
		+	|Inactive/Active
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Runoff
		+	|LIMIT_DT_COURANT
		+	|Connect/disconnect limitation of dt by courant number
		+	|0/1
		+	|Inactive/Active
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Runoff
		+	|MAX_COURANT
		+	|Maximum value for Courant number
	|		|
		+	|Needed if LIMIT_DT_COURANT : 1
		+	|1.0
	|		|
		+	|Real
	|-		|-
	| Land		| Land
−	|Snow	+	|Runoff
		+	|MAX_ITERATIONS
		+	|Maximum number of internal iterations allowed for the module
	|		|
	|		|
		+	|1024
	|		|
		+	|Integer
		+	|-
		+	| Land
		+	|Runoff
		+	|MAX_VELOCITY
	|		|
	|		|
		+	|Needed if IMPOSE_MAX_VELOCITY : 1
		+	|0.1
	|		|
−	|	+	|Real
−	|}
−
−	=== ModuleVegetation ===
−
−	==== Vegetation.dat ====
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|ADJUST_RUE_FOR_CO2	+	|MIN_ITERATIONS
−	|Connects/disconnects CO2 limitation on plant growth	+	|Minimum number of internal iteration to start asking for a lower global dt
−	|0/1	+	|
−	|Inactive/Active	+	|
	|1		|1
−	| -	+	|
−	|Boolean	+	|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|ADJUST_RUE_FOR_VPD	+	|MIN_WATER_COLUMN
−	|Connects/disconnects Vapour Pressure Deficit limitation plant growth	+	|Minimum water column for overland flow
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|1	+	|0.001
−	| -	+	|m
−	|Boolean	+	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|ATMOSPHERE_CO2	+	|MIN_WATER_COLUMN_ADVECTION
−	|Atmosphere CO2 concentrations - should be atmosphere prop	+	|Minimum water column for advection
	|		|
		+	|Needed if ADVECTION : 1
		+	|0.0
	|		|
−	|330
−	| ppm
	|Real		|Real
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Runoff
		+	| rowspan="2" |WATER_COLUMN_FACE
		+	| rowspan="2" |Method for computing water column in the face
		+	|1
		+	|Using maximum level and maximum bottom
		+	| rowspan="2" |1
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
		+	|-
		+	|2
		+	|Using maximum level and average of bottom
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|ATMOSPHERE_OUTPUT	+	|ROUTE_D4
−	|Output averaged atmosphere properties during dt	+	|Connect/disconnect route of water in 8 direction if accumulation cells exist
	|0/1		|0/1
−	|Inactive/Active	+	|Inactive/Active
	|0		|0
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|CHANGE_CANOPY_HEIGHT	+	|ROUTE_D4_ON_DN
−	|Changes made to swat code because showed error with grazing	+	|Connect/disconnect route of water in 8 direction on cells that have drainage network
	|0/1		|0/1
−	|Inactive/Active	+	|Inactive/Active
	|0		|0
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|CHANGE_LAI_SENESCENCE	+	|SIMPLE_CHANNEL_FLOW
−	|Changes made to swat code because showed error with grazing	+	|
	|0/1		|0/1
−	|Inactive/Active	+	|Inactive/Active
	|0		|0
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	|DORMANCY	+	|STABILIZE
−	|Connects/disconnects dormancy	+	|Connect/disconnect stability criteria
	|0/1		|0/1
−	|Inactive/Active	+	|Inactive/Active
	|0		|0
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Runoff
−	| rowspan="2" |EVOLUTION	+	|STABILIZE_FACTOR
−	| rowspan="2" |Global properties evolution	+	|Fraction of cell volume allowed for volume variation in one time step
−	|1
−	|Read from file
−	| rowspan="2" | -
	|		|
−	|Integer	+	|Needed if STABILIZE : 1
		+	|0.1
		+	|%
		+	|Real
		+	|}
		+
		+	=== Module Basin ===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleBasin.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Land	+	! scope="col" |Project
−	|Vegetation	+	! scope="col" |Module
−	|2	+	! scope="col" |Keyword
−	|Vegetation growth model	+	! scope="col" |Keyword description
−	|	+	! scope="col" |Options
−	|Integer	+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Basin
−	|FEDDES_DATABASE	+	|ATMOSPHERE
−	|Readed if not using growth simulation	+	|Use Module Atmosphere
−	| -	+	|0/1
		+	|Inactive/Active
		+	|1
	|		|
−	|	+	|Boolean
−	| -
−	|String
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Basin
−	|FERTILIZATION	+	|DRAINAGE_NET
−	|Connects/disconnects fertilization	+	|Use Module DrainageNetork
	|0/1		|0/1
−	|Inactive/Active	+	|Inactive/Active
−	|0	+	|1
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Basin
−	|FERTILIZER_DATABASE	+	|POROUS_MEDIA
−	|Readed if growth simulation and if FERTILIZATION : 1	+	|Use Module Porous Media
−	| -	+	|0/1
		+	|Inactive/Active
		+	|1
	|		|
−	|	+	|Boolean
−	| -
−	|String
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Basin
−	|FLUXES_TO_SOIL_OUTPUT	+	|RUN_OFF
−	|Output fluxes to soil	+	|Use Module RunOff
	|0/1		|0/1
	|Inactive/Active		|Inactive/Active
−	|0	+	|1
−	| -	+	|
	|Boolean		|Boolean
		+	|}
		+
		+	=== Module Irrigation ===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleIrrigation.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|GRAZING	+	|ACTIVE
−	|Connects/disconnects grazing	+	|
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|0	+	|1
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|GROWTH_DATABASE	+	|END_INSTANT_THRESHOLD
−	|Growth parameters for each vegetation type - read in case of vegetation growth simulation	+	|
−	| -	+	|0-23
	|		|
−	|	+	|23.0
−	| -	+	|hours
−	|String	+	|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|HARVEST_KILL	+	|GEAR_DEBIT
−	|Connects/disconnects Harvest and/or Kill	+	|
−	|0/1
−	|Inactive/Active
−	|0
−	| -
−	|Boolean
−	|-
−	| Land
−	|Vegetation
−	|INTEGRATION_DT
−	|DT to integrate external variables until vegetation is called (vegetation DT)
	|		|
	|		|
−	| 86400	+	|10.0
−	| seconds	+	|mm
	|Real		|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|LIMIT_TRANSP_WATER_VEL	+	|GEAR_EFFICIENCY
−	|!Read if WATER_UPTAKE_METHOD == 1	+	|
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|0	+	|0.85
−	| -	+	|
−	|Boolean	+	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	| rowspan="2" |MODEL_EVOLUTION	+	|GEAR_MAX_VEL
−	| rowspan="2" |Global properties evolution	+	|
−	|1	+	|
−	|Vegetation growth will NOT be modeled	+	|
−	|rowspan="2" | -	+	|4.0
	|		|
−	|Integer	+	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
		+	|GEAR_MIN_VEL
		+	|
		+	|
		+	|
		+	|0.2
		+	|
		+	|Real
		+	|-
		+	| rowspan="5"| Land
		+	| rowspan="5"|Irrigation
		+	| rowspan="5"|GEAR_TYPE
		+	| rowspan="5"|
		+	|1
		+	|CenterPivot
		+	| rowspan="5"|1
		+	| rowspan="5"|
		+	| rowspan="5"|Integer
		+	|-
	|2		|2
−	|SWAT method will be used to model vegetation growth	+	|LinearPivot
−	|	+	|-
−	|Integer	+	|3
		+	|Sprinkler
		+	|-
		+	|4
		+	|GravitySystem
		+	|-
		+	|5
		+	|DripIrrigation
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|NITROGEN_DISTRIBUTION_PARAMETER	+	|HEAD_TARGET
	|		|
	|		|
	|		|
−	| 20	+	| -10.0
−	|	+	|m
	|Real		|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|NITROGEN_STRESS	+	|HEAD_THRESHOLD
−	|Connects/disconnects N limitation on plant growth	+	|
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|0	+	| -6.0
−	| -	+	|m
−	|Boolean	+	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|NUTRIENT_FLUXES_WITH_SOIL	+	|MAX_CONSECUTIVE_DAYS
−	|Connects/disconnects nutrient fluxes with soil	+	|
−	|0/1	+	|
−	|Inactive/Active
−	|1
−	| -
−	|Boolean
−	|-
−	| Land
−	|Vegetation
−	| rowspan="3" |NUTRIENT_UPTAKE_METHOD
−	| rowspan="3" | -
−	|1
−	|uptake is: concentration * water uptake
−	|rowspan="3" |2
	|		|
		+	|2
		+	|days
	|Integer		|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|2	+	|MAX_DAILY_IRRIGATION_TIME
−	|SWAT based (independent of water uptake)	+	|
		+	|
	|		|
		+	|86400.0
		+	|seconds
	|Integer		|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|3	+	|MAX_DEPTH_TO_CHECK
−	|NO nutrient uptake	+	|
		+	|
	|		|
−	|Integer	+	|0.2
		+	|m
		+	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	| rowspan="2" |NUTRIENT_STRESS_METHOD	+	|MAX_SATURATED_FRACTION
−	| rowspan="2" | -	+	|
−	|1	+	|0-1
−	|Effective/optimal
−	|rowspan="2" |2
	|		|
−	|Integer	+	|0.3
−	|-
−	| Land
−	|Vegetation
−	|2
−	|SWAT based
	|		|
−	|Integer	+	|Real
	|-		|-
−	| Land	+	| rowspan="3"| Land
−	|Vegetation	+	| rowspan="3"|Irrigation
−	|PARAMETERS_FILE	+	| rowspan="3"|METHOD
−	|Agricultural practices definition	+	| rowspan="3"|
−	| -	+	|1
−	|	+	|Fixed Irrigation (Fixed irrigation is provided by the user)
−	|	+	| rowspan="3"|1
−	| -	+	| rowspan="3"|
−	|String	+	| rowspan="3"|Integer
		+	|-
		+	|2
		+	|IrrigationBySteps
		+	|-
		+	|3
		+	|ContinuousIrrigation
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|PESTICIDE	+	|MIN_INTERVAL_BETWEEN_EVENTS
−	|Connects/disconnects pesticides	+	|
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|0	+	|86400.0
−	| -	+	|seconds
−	|Boolean	+	|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|PESTICIDE_DATABASE	+	|NAME
−	|Readed if growth simulation and PESTICIDE : 1	+	|
−	| -	+	|
		+	|
		+	|
	|		|
−	|
−	| -
	|String		|String
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|PHOSPHORUS_DISTRIBUTION_PARAMETER	+	|SATURATION_THRESHOLD
	|		|
		+	|0-1
	|		|
		+	|0.9
	|		|
−	| 20
−	|
	|Real		|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|PHOSPHORUS_STRESS	+	|SINGLE_SYSTEM
−	|Connects/disconnects P limitation on plant growth	+	|
	|0/1		|0/1
−	|Inactive/Active	+	|
	|0		|0
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	| rowspan="3" |ROOT_PROFILE	+	|START_INSTANT_THRESHOLD
−	| rowspan="3" |if WATER_UPTAKE_METHOD = 1	+	|
−	|1	+	|0-23
−	|Triangular
−	|rowspan="3" |1
	|		|
		+	|0.0
		+	|hours
	|Integer		|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|2	+	|START_TIME
−	|Constant	+	|
−	||	+	|
−	|Integer	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Land		| Land
−	|Vegetation	+	|Irrigation
−	|3	+	|STOP_TIME
−	|Exponential(SWAT-like)	+	|
−	||	+	|
−	|Integer	+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module PorousMedia ===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMedia.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	| rowspan="2" |SALINITY_STRESS_METHOD	+	|ALPHA
−	| rowspan="2" |if WATER_UPTAKE_METHOD = 1	+	|
−	|1	+	|
−	|Threshold/Slope	+	|
−	|rowspan="2" |1
	|		|
−	|Integer	+	|1/m
		+	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|2	+	|BOTTOM_FILE
−	|VanGenuchten(not implemented yet)	+	|Path to Bottom Topography File
		+	|
		+	|
		+	| -
	|		|
−	|Integer	+	|String
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|TEMPERATURE_STRESS	+	|CALC_DRAINAGE_FLUX
−	|Connects/disconnects temp. limitation on plant growth	+	|
	|0/1		|0/1
−	|Inactive/Active	+	|
−	|0	+	|1
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|VEGETATION_ID_FILE	+	|CALC_HORIZONTAL
−	|Vegetation distribution grid path
−	| -
	|		|
−	|	+	|0/1
−	| -
−	|String
−	|-
−	| Land
−	|Vegetation
−	|VEGETATION_DT
−	|Vegetation DT
−	| -
	|		|
		+	|1
	|		|
−	|seconds	+	|Boolean
−	|Real
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|WATER_UPTAKE	+	|COMPUTE_HYDRO_PRESSURE
	|		|
	|0/1		|0/1
−	|Inactive/Active	+	|
	|1		|1
−	| -	+	|
	|Boolean		|Boolean
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|WATER_UPTAKE_COMPENSATION_FACTOR	+	|COMPUTE_SOIL_FIELD
−	|Factor for uptake compensation from lower layers if computed layer demand is not met if zero there will exist no compensation. If 1. total demand no met may come from lower layers	+	|
		+	|0/1
	|		|
		+	|0
	|		|
−	|0.	+	|Boolean
−	|
−	|real
	|-		|-
−	| Land	+	|rowspan=5| Land
−	|Vegetation	+	|rowspan=5|PorousMedia
−	| rowspan="2" |WATER_UPTAKE_METHOD	+	|rowspan=5|CONDUTIVITYFACE
−	| rowspan="2" | -	+	|rowspan=5|Way to interpolate conducivity face
	|1		|1
−	|according to root profile	+	|Average
−	|rowspan="2" |1	+	|rowspan=5| 1
−	|	+	|rowspan=5| -
−	|Integer	+	|rowspan=5| Integer
	|-		|-
−	| Land
−	|Vegetation
	|2		|2
−	|SWAT based (exponential and thresholds)	+	|Maximum
−	||
−	|Integer
	|-		|-
−	| Land	+	|3
−	|Vegetation	+	|Minimum
−	| rowspan="2" |WATER_UPTAKE_STRESS_METHOD	+	|-
−	| rowspan="2" |if WATER_UPTAKE_METHOD = 1	+	|4
−	|1	+	|Weigthed
−	|Feddes
−	|rowspan="2" |1
−	|
−	|Integer
	|-		|-
−	| Land	+	|5
−	|Vegetation	+	|Geometric Average
−	|2
−	|VanGenuchten
−	|
−	|Integer
	|-		|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|WATER_STRESS	+	|CONTINUOUS_OUTPUT_FILE
−	|Connects/disconnects water limitation on plant growth	+	|Writes "famous" iter.log
	|0/1		|0/1
−	|Inactive/Active	+	|
	|1		|1
−	| -	+	|
	|Boolean		|Boolean
−	|}
−
−	==== Vegetation Parameters File ====
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|AGRIC_PRACT_ID	+	|CUT_OFF_THETA_HIGH
		+	|Set Theta = ThetaS when Theta > ThetaS
	|		|
	|		|
		+	|1e-15
	|		|
−	|	+	|Real
−	|	+	|-
−	|Integer
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|NAME	+	|CUT_OFF_THETA_LOW
		+	|Disables calculation when Theta is near ThetaR
	|		|
	|		|
		+	|1e-6
	|		|
−	|	+	|Real
−	|	+	|-
−	|String
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|VEGETATION_ID	+	|DECREASE_DT
−	|crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database)	+	|Decrease of DT when iter > MAX_ITER
	|		|
	|		|
−	|	+	|0.70
−	|	+	|
−	|Integer	+	|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|PLANTING_JULIANDAY	+	|DN_LINK
−	|Julian day when planting will occur
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	| Land
−	|Vegetation
−	|PLANTING_HUBASE
−	|Percentage of POTENTIAL YEARLY HU when planting will occur
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	| Land
−	|Vegetation
−	|MATURITY_HU
−	|Total PLANT ACCUMULATED HU when reaching maturity
	|		|
	|		|
−	|	+	|-
−	|
−	|Integer
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|FILENAME	+	|DN_LINK_AREA_METHOD
	|		|
	|		|
	|		|
−	|
−	|
−	|String
−	|-
−	| Land
−	|Vegetation
−	|HARVESTKILL_JULIANDAY
−	|julian day when harvestkill operation occur
	|		|
	|		|
−	|
−	|
	|Integer		|Integer
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|HARVESTKILL_PLANTHU	+	|FC_K_FACTOR
−	|Percentage of PLANT ACCUMULATED HU when harvestkill operation occur	+	|
		+	|
		+	|
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|HARVEST_JULIANDAY	+	|GW_SAT_FACTOR
−	|julian day when harvest operation occur	+	|
		+	|
	|		|
		+	|0.99
	|		|
−	|	+	|Real
−	|	+	|-
−	|Integer
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|HARVEST_PLANTHU	+	|HEAD_LIMIT
−	|Percentage of PLANT ACCUMULATED HU when harvest operation occur	+	|
	|		|
	|		|
−	|	+	| -100.0
−	|	+	|m
−	|Real	+	|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|HARVEST_EFFICIENCY	+	|HORIZONTAL_K_FACTOR
−	|Efficiency for harvest operation (residue if lower than 1)	+	|Factor for Horizontal Conductivity = Kh / Kv
		+	|
	|		|
		+	|1
	|		|
−	|	+	|Real
−	|	+	|-
−	|Real
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|KILL_JULIANDAY	+	|ID
−	|julian day when harvestkill operation occur
	|		|
−	|
−	|
−	|
−	|Integer
−	|-
−	| Land
−	|Vegetation
−	|KILL_PLANTHU
−	|Percentage of PLANT ACCUMULATED HU when kill operation occur
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	| Land
−	|Vegetation
−	|GRAZING_START_JULIANDAY
−	|julian day when grazing will occur
	|		|
	|		|
−	|
−	|
	|Integer		|Integer
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|GRAZING_START_PLANTHU	+	|IGNORE_WATER_COLUMN_ON_EVAP
−	|Percentage of POTENTIAL YEARLY HU when grazing will occur	+	|
		+	|0/1
	|		|
		+	|1
	|		|
−	|	+	|Boolean
−	|	+	|-
−	|Real
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|GRAZING_DAYS	+	|IMPOSE_BOUNDARY_VALUE
−	|Days of grazing (continuous)	+	|
		+	|0/1
	|		|
		+	|0
	|		|
−	|	+	|Boolean
−	|	+	|-
−	|Integer
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|MINIMUM_BIOMASS_FOR_GRAZING	+	|IMPOSE_BOUNDARY_BOTTOM
−	|minimum biomass for grazing	+	|
		+	|0/1
	|		|
		+	|0
	|		|
−	|	+	|Boolean
−	|kg/ha	+	|-
−	|Real
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|GRAZING_BIOMASS	+	|IMPOSE_BOUNDARY_BOTTOM_CONDITION
−	|grazed biomass	+	|
		+	|
	|		|
	|		|
−	|
−	|kh/ha.day
−	|Real
−	|-
−	| Land
−	|Vegetation
−	|GRAZING_FRACTION_TO_MANURE
−	|fraction of grazed biomass that goes to manure in same cell and day (0-1)
	|		|
	|		|
−	|	+	|-
−	|
−	|Real
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|GRAZING_MANURE_NFRACTION	+	|INCREASE_DT
−	|fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio)	+	|Increase of DT when iter < MIN_ITER
		+	|
	|		|
		+	|1.25
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|GRAZING_MANURE_NUREAFRACTION	+	|INFIL_CONDUCTIVITY
−	|fraction of manure N that is Urea (0-1). The remainder will be organic N	+	|
		+	|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	| Land
−	|Vegetation
−	|TRAMPLING_BIOMASS
−	|biomass not eaten but removed from plant and moved to soil, related to grazing efficiency
	|		|
	|		|
−	|
−	|kg/ha.day
−	|Real
−	|}
−
−	==== Fertilization Parameters File ====
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|FERTILIZER_ID	+	|L_FIT
−	|Fertilizer used in autofertilization (see fertilizer database)	+	|
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	| Land
−	|Vegetation
−	|NITROGEN_TRESHOLD
−	|Percentage of stress below which autofertilization starts (0-1)
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|NITROGEN_APPLICATION_MAX	+	|LIMIT_EVAP_HEAD
−	|Maximum amount of fertilizer in one application	+	|
		+	|0/1
	|		|
		+	|0
	|		|
−	|	+	|Boolean
−	|kg/ha	+	|-
−	|Real
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|NITROGEN_ANNUAL_MAX	+	|LIMIT_EVAP_WATER_VEL
−	|Maximum amount of fertilizer in one year	+	|
		+	|0/1
	|		|
		+	|0
	|		|
−	|	+	|Boolean
−	|kg/ha
−	|Real
	|-		|-
−	| rowspan="2" | Land	+	| Land
−	| rowspan="2" |Vegetation	+	|PorousMedia
−	| rowspan="2" |EXPLICIT_PHOSPHORUS	+	|MAX_DTM_FOR_BOUNDARY
−	| rowspan="2" |	+	|
−	|1	+	|
−	|Explicit add phosphorus if needed	+	|
−	| rowspan="2" | -	+	|
−	| rowspan="2" |	+	|
−	| rowspan="2" |Boolean	+	|
	|-		|-
−	|0
−	|Add phosphorus if nitrogen needed (SWAT method)
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|PHOSPHORUS_TRESHOLD	+	|MIN_THETAF_FOR_BOUNDARY
−	|only read if EXPLICIT_PHOSPHORUS : 1	+	|
		+	|
	|		|
		+	|0
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|PHOSPHORUS_APPLICATION_MAX	+	|N_FIT
−	|only read if EXPLICIT_PHOSPHORUS : 1	+	|
		+	|
		+	|
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|PHOSPHORUS_ANNUAL_MAX	+	|SAT_K
−	|only read if EXPLICIT_PHOSPHORUS : 1	+	|Saturation conductivity
		+	|
	|		|
	|		|
−	|	+	|m/s
−	|
	|Real		|Real
	|-		|-
−	| rowspan="2" |Land	+	| Land
−	| rowspan="2" |Vegetation	+	|PorousMedia
−	| rowspan="2" |N_STRESS_TYPE	+	|START_WITH_FIELD
−	| rowspan="2" |	+	|Sets Theta initial Field Capacity
		+	|0/1
		+	|
	|1		|1
−	|NTarget	+	|
−	| rowspan="2" | -	+	|Boolean
−	| rowspan="2" |
−	| rowspan="2" |Integer
	|-		|-
−	|2
−	|Annual Max approach
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|FERTILIZER_APPLICATION_JDAY	+	|STOP_ON_WRONG_DATE
−	|julian day when pesticide application will occur	+	|Stops if previous run end is different from actual Start
		+	|0/1
	|		|
		+	|1
	|		|
−	|	+	|Boolean
−	|	+	|-
−	|Integer
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|FERTILIZER_APPLICATION_HU	+	|THETA_HYDRO_COEF
−	|Percentage of POTENTIAL YEARLY HU when pesticide application will occur	+	|
		+	|
	|		|
		+	|0.98
	|		|
−	|
−	|
	|Real		|Real
	|-		|-
−	| rowspan="2" |Land
−	| rowspan="2" |Vegetation
−	| rowspan="2" |FERTILIZER_CONT_ON S
−	| rowspan="2" |
−	|1
−	|If this is a continuous fertilizer application
−	| rowspan="2" | -
−	| rowspan="2" |
−	| rowspan="2" |Boolean
−	|-
−	|0
−	|or absent if not
−	|-
	| Land		| Land
−	|Vegetation	+	|PorousMedia
−	|FERTILIZER_CONT_DAYS	+	|THETA_R
−	|how many days of continuous application (read if FERTILIZER_CONT_ON : 1)	+	|Residual water content
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	| Land
−	|Vegetation
−	|FERTILIZER_APPLICATION_KG_HA
−	|Amount of fertilizer applied
	|		|
	|		|
−	|
−	|kg/ha
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|PorousMedia
−	|PESTICIDE_ID	+	|THETA_S
−	|Pesticide used in this application (see pesticide database)	+	|Saturation water content
−	|
−	|
−	|
−	|
−	|Integer
−	|-
−	|Land
−	|Vegetation
−	|PESTICIDE_APPLICATION_JDAY
−	|julian day when pesticide application will occur
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	|Land
−	|Vegetation
−	|PESTICIDE_APPLICATION_HU
−	|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|PorousMedia
−	|PESTICIDE_APPLICATION_KG_HA	+	|THETA_TOLERANCE
−	|Amount of pesticide applied	+	|Converge Parameter
		+	|
	|		|
		+	|0.001
	|		|
−	|
−	|kg/ha
	|Real		|Real
	|-		|-
−	| rowspan="2" |Land	+	| Land
−	| rowspan="2" |Vegetation	+	|PorousMedia
−	| rowspan="2" |PESTICIDE_CONT_ON	+	|VEL_HYDRO_COEF
−	| rowspan="2" |	+	|
		+	|
		+	|
	|1		|1
−	|If this is a continuous pesticide application
−	| rowspan="2" | -
−	| rowspan="2" |
−	| rowspan="2" |Boolean
−	|-
−	|0
−	|or absent if not
−	|-
−	|Land
−	|Vegetation
−	|PESTICIDE_CONT_DAYS
−	|how many days of continuous application (read if PESTICIDE_CONT_ON : 1)
	|		|
−	|	+	|Real
−	|
−	|
−	|Integer
	|}		|}
−	==== Growth Database File ====	+	=== ModulePorousMediaProperties===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMediaProperties.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 7,425:		Line 7,160:
	! scope="col" |Units		! scope="col" |Units
	! scope="col" |Type		! scope="col" |Type
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|PorousMediaProperties
−	|PLANT_TYPE	+	|
		+	|
	|		|
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_NITROGENFRACTION_N1
	|		|
	|		|
		+	|-
		+	| Land
		+	|PorousMediaProperties
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_NITROGENFRACTION_N2
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_NITROGENFRACTION_N3
	|		|
	|		|
	|		|
−	|	+	|-
−	|	+	| Land
−	|Real	+	|PorousMediaProperties
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_PHOSPHORUSFRACTION_P1
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_PHOSPHORUSFRACTION_P2
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_PHOSPHORUSFRACTION_P3
	|		|
		+	|}
		+
		+	=== ModuleReservoirs ===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Land
		+	|Reservoirs
		+	|BOTTOM_FLUXES
		+	|Connect or Disconnect bottom fluxes
		+	|0/1
	|		|
		+	|0
	|		|
−	|	+	|Boolean
−	|	+	|-
−	|Real	+	| Land
−	|-	+	|Reservoirs
−	|Land	+	|CONTINUOUS
−	|Vegetation	+	|Computations follow from another simulation
−	|BASE_TEMPERATURE	+	|0/1
	|		|
	|		|
	|		|
−	|	+	|Boolean
−	|	+	|-
−	|Real	+	| Land
−	|-	+	|Reservoirs
−	|Land	+	|DISCHARGES
−	|Vegetation	+	|Connect or Disconnect discharges
−	|OPTIMAL_TEMPERATURE	+	|0/1
	|		|
		+	|0
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Reservoirs
		+	|INITIAL_VOLUME_DEFAULT_METHOD
		+	|start percentage full
		+	|0/1
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|RADIATION_EXTINCTION_COEF
	|		|
	|		|
		+	|Integer
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Reservoirs
		+	| rowspan="2" |PROP_COMPUTE_METHOD
		+	| rowspan="2" |Water properties concentration
		+	|1
		+	|instant mixing
		+	| rowspan="2" |1
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
		+	|-
		+	|2
		+	|retention time full mixing
		+	|-
		+	| Land
		+	|Reservoirs
		+	|RESERVOIR_FILE
		+	|Path to reservoirs properties  File
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|BIOMASS_ENERGY_RATIO
	|		|
	|		|
	|		|
−	|	+	|String
−	|	+	|-
−	|Real	+	| Land
−	|-	+	|Reservoirs
−	|Land	+	|START_PERCENTAGE_FULL
−	|Vegetation	+	|percentage of max volume at start
−	|CO2_HIGH	+	|0/100.0
	|		|
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|Reservoirs
−	|BIOMASS_ENERGY_RATIO_HIGH	+	|SURFACE_FLUXES
		+	|Connect or Disconnect surface fluxes
		+	|0/1
	|		|
		+	|0
		+	|
		+	|Boolean
		+	|-
		+	| Land
		+	|Reservoirs
		+	|TIME_SERIE
		+	|Checks if the user wants to write time series of the particle properties
		+	|0/1
	|		|
−	|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|RUE_DECLINE_RATE
	|		|
	|		|
		+	|Boolean
		+	|-
		+	| Land
		+	|Reservoirs
		+	|TIME_SERIE_LOCATION
		+	|Path to time serie locations file
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|LAI_MAX
	|		|
	|		|
	|		|
−	|	+	|String
−	|	+	|}
−	|Real	+
−	|-	+	=== Reservoir Parameters ===
−	|Land	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]
−	|Vegetation	+	{| class="wikitable"
−	|OPTIMAL_LAIMAXFRACTION_1	+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Land
		+	|Reservoirs
		+	|CONSTRUCTION_YEAR
		+	|The year when the reservoir begin to operate
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_LAIMAXFRACTION_2
	|		|
		+	|Integer
		+	|-
		+	| Land
		+	|Reservoirs
		+	|COORDINATES
		+	|Longitude and latitude geographic coordenates of the reservoir
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|GROWFRACTION_1
	|		|
	|		|
	|		|
−	|	+	|-
−	|	+	| Land
−	|Real	+	|Reservoirs
−	|-	+	|DN_NODE_ID:
−	|Land	+	|ID location of the reservoir in the Drainage Network
−	|Vegetation
−	|GROWFRACTION_2
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|GROWFRACTION_LAIDECLINE
	|		|
		+	|Integer
		+	|-
		+	| Land
		+	|Reservoirs
		+	|GRID_I
		+	| Cell row where the reservoir is located in the GRID
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|ROOT_DEPTH_MAX
	|		|
		+	|
		+	|Integer
		+	|-
		+	| Land
		+	|Reservoirs
		+	|GRID_J
		+	| Cell column where the reservoir is located in the GRID
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|CANOPY_HEIGHT_MAX
	|		|
	|		|
		+	|Integer
		+	|-
		+	| Land
		+	|Reservoirs
		+	|ID
		+	|Reservoir ID
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|OPTIMAL_HARVEST_INDEX
	|		|
	|		|
	|		|
−	|	+	|Integer
−	|	+	|-
−	|Real	+	| Land
−	|-	+	|Reservoirs
−	|Land	+	|NAME
−	|Vegetation	+	|Reservoir name
−	|MINIMUM_HARVEST_INDEX
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|YELD_NITROGENFRACTION
	|		|
	|		|
		+	|-
		+	| Land
		+	|Reservoirs
		+	|MAX_OUTFLOW
		+	|Maximum outflow the reservoir can operate
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|YELD_PHOSPHORUSFRACTION
	|		|
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|Reservoirs
−	|TREE_YEARSTOMATURITY	+	|MAX_VOLUME
		+	|maximum volume the reservoir can operate
	|		|
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	|Land
−	|Vegetation
−	|TREE_MAXIMUMBIOMASS
	|		|
−	|
−	|
−	|
−	|
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|Reservoirs
−	|BIOMASS_FRAC_REMOVED_DORMANCY	+	|MIN_OUTFLOW
		+	|Enviromental flow
	|		|
	|		|
		+	|0
	|		|
−	|
−	|
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|Reservoirs
−	|LAI_MIN_DORMANCY	+	|MIN_VOLUME
		+	|minimum volume the reservoir operates
		+	|
	|		|
	|		|
	|		|
−	|
−	|
	|Real		|Real
−	|}
−
−	==== Pesticide Database File ====
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| rowspan="5" |Land
−	! scope="col" |Module	+	| rowspan="5" |Reservoirs
		+	| rowspan="5" |OPERATION_TYPE
		+	| rowspan="5" |Type of operation for the outflow in the reservoir
		+	|1
		+	|Operation is defined by the water level and the outflow
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |Integer
		+	|-
		+	|2
		+	|Operation is defined by the water level and the outflow as a percentage of the inflow
		+	|-
		+	|3
		+	|Operation is defined by the percentage of reservoir volume and the outflow
		+	|-
		+	|4
		+	|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the inflow
		+	|-
		+	|5
		+	|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the maximum outflow
		+	|}
		+
		+	=== ModuleRunoffProperties===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunoffProperties.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
	! scope="col" |Keyword		! scope="col" |Keyword
	! scope="col" |Keyword description		! scope="col" |Keyword description
Line 7,740:		Line 7,470:
	! scope="col" |Units		! scope="col" |Units
	! scope="col" |Type		! scope="col" |Type
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|RunoffProperties
−	|PESTICIDE_ID	+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Land
		+	|RunoffProperties
		+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|		|
−	|	+	|-
−	|	+	| Land
−	|Integer	+	|RunoffProperties
−	|-
−	|Land
−	|Vegetation
−	|PESTICIDE_NAME
	|		|
	|		|
	|		|
−	|
−	|
−	|String
−	|-
−	|Land
−	|Vegetation
−	|PESTICIDE_APPLICATION_JDAY
−	|julian day when pesticide application will occur
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	|Land
−	|Vegetation
−	|PESTICIDE_APPLICATION_KG_HA
−	|Amount of pesticide applied
	|		|
	|		|
−	|
−	|kg/ha
−	|Real
	|}		|}
−	==== Fertilizer Database File ====	+	=== ModuleSnow ===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleSnow.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 7,795:		Line 7,515:
	! scope="col" |Units		! scope="col" |Units
	! scope="col" |Type		! scope="col" |Type
−	|-	+	|-
−	|Land	+	| Land
−	|Vegetation	+	|Snow
−	|FERTILIZER_ID
	|		|
	|		|
	|		|
−	|
−	|
−	|Integer
−	|-
−	|Land
−	|Vegetation
−	|FERTILIZER_NAME
	|		|
	|		|
	|		|
−	|
−	|
−	|String
−	|-
−	|Land
−	|Vegetation
−	|MINERAL_N_FRACTION_IN_FERTILIZER
	|		|
		+	|-
		+	| Land
		+	|Snow
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|ORGANIC_N_FRACTION_IN_FERTILIZER
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|AMMONIA_FRACTION_IN_MINERAL_N
	|		|
	|		|
		+	|-
		+	| Land
		+	|Snow
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|MINERAL_P_FRACTION_IN_FERTILIZER
−	|
−	|
−	|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|ORGANIC_P_FRACTION_IN_FERTILIZER
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
−	|-
−	|Land
−	|Vegetation
−	|FERTILIZER_FRACTION_IN_SURFACE
	|		|
	|		|
	|		|
−	|
−	|
−	|Real
	|}		|}
−	==== Feddes Database File ====	+	=== ModuleVegetation ===
		+
		+	==== Vegetation.dat ====
	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]		[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
Line 7,890:		Line 7,562:
	! scope="col" |Units		! scope="col" |Units
	! scope="col" |Type		! scope="col" |Type
−	|-	+
−	|Land	+	|-
		+	| Land
	|Vegetation		|Vegetation
−	|VEGETATION_ID	+	|ADJUST_RUE_FOR_CO2
−	|	+	|Connects/disconnects CO2 limitation on plant growth
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|
−	|
−	|Integer
−	|-
−	|rowspan="3" |Land
−	|rowspan="3" |Vegetation
−	|rowspan="3" |FEDDES_TYPE
−	|rowspan="3" |
	|1		|1
−	|Normal	+	| -
−	|rowspan="3" | 1	+	|Boolean
−	|rowspan="3" | -	+	|-
−	|rowspan="3" |Integer	+	| Land
−	|-
−	|2
−	|With points
−	|-
−	|3
−	|Variable consoant the transpiration
−	|-
−	|Land
	|Vegetation		|Vegetation
−	|FEDDES_H1	+	|ADJUST_RUE_FOR_VPD
−	|higher head for transpiration (saturation and oxygen loss)	+	|Connects/disconnects Vapour Pressure Deficit limitation plant growth
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|	+	|1
−	|m	+	| -
−	|Real	+	|Boolean
−	|-	+	|-
−	|Land	+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_H2	+	|ATMOSPHERE_CO2
−	|1st optimal head for transpiration	+	|Atmosphere CO2 concentrations - should be atmosphere prop
	|		|
	|		|
−	|	+	|330
−	|m	+	| ppm
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_H3	+	|ATMOSPHERE_OUTPUT
−	|2nd optimal head for transpiration	+	|Output averaged atmosphere properties during dt
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|	+	|0
−	|m	+	| -
−	|Real	+	|Boolean
−	|-	+	|-
−	|Land	+	| Land
		+	|Vegetation
		+	|CHANGE_CANOPY_HEIGHT
		+	|Changes made to swat code because showed error with grazing
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| Land
		+	|Vegetation
		+	|CHANGE_LAI_SENESCENCE
		+	|Changes made to swat code because showed error with grazing
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| Land
		+	|Vegetation
		+	|DORMANCY
		+	|Connects/disconnects dormancy
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Vegetation
		+	| rowspan="2" |EVOLUTION
		+	| rowspan="2" |Global properties evolution
		+	|1
		+	|Read from file
		+	| rowspan="2" | -
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
		+	|-
		+	|2
		+	|Vegetation growth model
		+	|-
		+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_H3H	+	|FEDDES_DATABASE
−	|	+	|Readed if not using growth simulation
−	|	+	| -
	|		|
	|		|
−	|m	+	| -
−	|Real	+	|String
−	|-	+	|-
−	|Land	+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_H3L	+	|FERTILIZATION
−	|	+	|Connects/disconnects fertilization
−	|	+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| Land
		+	|Vegetation
		+	|FERTILIZER_DATABASE
		+	|Readed if growth simulation and if FERTILIZATION : 1
		+	| -
	|		|
	|		|
−	|m	+	| -
−	|Real	+	|String
−	|-	+	|-
−	|Land	+	| Land
		+	|Vegetation
		+	|FLUXES_TO_SOIL_OUTPUT
		+	|Output fluxes to soil
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| Land
		+	|Vegetation
		+	|GRAZING
		+	|Connects/disconnects grazing
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_H4	+	|GROWTH_DATABASE
−	|lower head  for transpiration (wilting)	+	|Growth parameters for each vegetation type - read in case of vegetation growth simulation
−	|	+	| -
	|		|
	|		|
−	|m	+	| -
−	|Real	+	|String
−	|-	+	|-
−	|Land	+	| Land
		+	|Vegetation
		+	|HARVEST_KILL
		+	|Connects/disconnects Harvest and/or Kill
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_R2L	+	|INTEGRATION_DT
		+	|DT to integrate external variables until vegetation is called (vegetation DT)
	|		|
	|		|
−	|	+	| 86400
−	|	+	| seconds
−	|m
	|Real		|Real
−	|-	+	|-
−	|Land	+	| Land
		+	|Vegetation
		+	|LIMIT_TRANSP_WATER_VEL
		+	|!Read if WATER_UPTAKE_METHOD == 1
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Vegetation
		+	| rowspan="2" |MODEL_EVOLUTION
		+	| rowspan="2" |Global properties evolution
		+	|1
		+	|Vegetation growth will NOT be modeled
		+	| rowspan="2" | -
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
		+	|-
		+	|2
		+	|SWAT method will be used to model vegetation growth
		+	|-
		+	| Land
	|Vegetation		|Vegetation
−	|FEDDES_R2H	+	|NITROGEN_DISTRIBUTION_PARAMETER
	|		|
	|		|
	|		|
		+	| 20
	|		|
−	|m
	|Real		|Real
−	|-
−	|rowspan="2" |Land
−	|rowspan="2" |Vegetation
−	|rowspan="2" |USE_SALINITY
−	|rowspan="2" |
−	|1
−	|Yes
−	|rowspan="2" | 0
−	|rowspan="2" | -
−	|rowspan="2" |Boolean
	|-		|-
		+	| Land
		+	|Vegetation
		+	|NITROGEN_STRESS
		+	|Connects/disconnects N limitation on plant growth
		+	|0/1
		+	|Inactive/Active
	|0		|0
−	|No	+	| -
−	|-	+	|Boolean
−	|Land	+	|-
		+	| Land
	|Vegetation		|Vegetation
−	|SALINITY_STRESS_THRESHOLD	+	|NUTRIENT_FLUXES_WITH_SOIL
−	|	+	|Connects/disconnects nutrient fluxes with soil
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|	+	|1
−	|	+	| -
−	|	+	|Boolean
−	|-	+	|-
−	|Land	+	| rowspan="3" |Land
−	|Vegetation	+	| rowspan="3" |Vegetation
−	|SALINITY_STRESS_SLOPE	+	| rowspan="3" |NUTRIENT_UPTAKE_METHOD
−	|	+	| rowspan="3" | -
−	|
−	|
−	|
−	|
−	|
−	|-
−	|rowspan="3" |Land
−	|rowspan="3" |Vegetation
−	|rowspan="3" |STRESS_INTERACTION
−	|rowspan="3" |
	|1		|1
−	|Additive	+	|uptake is: concentration * water uptake
−	|rowspan="3" | 1	+	| rowspan="3" |2
−	|rowspan="3" | -	+	| rowspan="3" |
−	|rowspan="3" |Integer	+	| rowspan="3" |Integer
−	|-	+	|-
	|2		|2
−	|Multiplicative	+	|SWAT based (independent of water uptake)
−	|-
−	|3
−	|Min of all
−	|-
−	|}
−
−	==MOHID Water==
−
−	=== Module Assimilation===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleAssimilation.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	|3
−	! scope="col" |Module	+	|NO nutrient uptake
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
−	| Water	+	| rowspan="2" |Land
−	|Assimilation	+	| rowspan="2" |Vegetation
−	|COLD_RELAX_PERIOD	+	| rowspan="2" |NUTRIENT_STRESS_METHOD
−	|Period of time along which relaxation has a linear increase	+	| rowspan="2" | -
−	|	+	|1
−	|	+	|Effective/optimal
−	|-	+	| rowspan="2" |2
−	| Water	+	| rowspan="2" |
−	|Assimilation	+	| rowspan="2" |Integer
−	|DESCRIPTION
−	|Short description about the assimilation property
−	|
−	|
	|-		|-
−	| Water
−	|Assimilation
−	| rowspan="2" |DIMENSION
−	| rowspan="2" |Number of dimensions of the assimilation field
	|2		|2
−	|Two-Dimensional property	+	|SWAT based
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|3	+	|PARAMETERS_FILE
−	|Three-Dimensional property	+	|Agricultural practices definition
−	|-	+	| -
−	| Water
−	|Assimilation
−	|NAME
−	|Name of the assimilation property
−	|
	|		|
		+	|
		+	| -
		+	|String
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|OUTPUT_HDF	+	|PESTICIDE
−	|Output HDF results for assimilation property	+	|Connects/disconnects pesticides
−	|	+	|0/1
−	|	+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|OUTPUT_TIME	+	|PESTICIDE_DATABASE
−	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.	+	|Readed if growth simulation and PESTICIDE : 1
		+	| -
	|		|
		+	|
		+	| -
		+	|String
		+	|-
		+	| Land
		+	|Vegetation
		+	|PHOSPHORUS_DISTRIBUTION_PARAMETER
	|		|
−	|-
−	| Water
−	|Assimilation
−	|TIME_SERIE
−	|Output time series for assimilation property
	|		|
	|		|
		+	| 20
		+	|
		+	|Real
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|TIME_SERIE_LOCATION	+	|PHOSPHORUS_STRESS
−	|Path to time serie locations file	+	|Connects/disconnects P limitation on plant growth
−	|	+	|0/1
−	|	+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
	|-		|-
−	| Water	+	| rowspan="3" |Land
−	|Assimilation	+	| rowspan="3" |Vegetation
−	| rowspan="3" |TYPE_ZUV	+	| rowspan="3" |ROOT_PROFILE
−	| rowspan="3" |Reference of the field to the grid.	+	| rowspan="3" |if WATER_UPTAKE_METHOD = 1
−	|U	+	|1
−	|Variable is referenced to the XX faces of the control volume	+	|Triangular
		+	| rowspan="3" |1
		+	| rowspan="3" |
		+	| rowspan="3" |Integer
		+	|-
		+	|2
		+	|Constant
		+	|-
		+	|3
		+	|Exponential(SWAT-like)
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Vegetation
		+	| rowspan="2" |SALINITY_STRESS_METHOD
		+	| rowspan="2" |if WATER_UPTAKE_METHOD = 1
		+	|1
		+	|Threshold/Slope
		+	| rowspan="2" |1
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
	|-		|-
−	| Water	+	|2
−	|Assimilation	+	|VanGenuchten(not implemented yet)
−	|V
−	|Variable is referenced to the YY faces of the control volume
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|Z	+	|TEMPERATURE_STRESS
−	|Variable is defined in the center of the control volume	+	|Connects/disconnects temp. limitation on plant growth
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	| -
		+	|Boolean
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|UNITS	+	|VEGETATION_ID_FILE
−	|Assimilation property units	+	|Vegetation distribution grid path
−	|	+	| -
	|		|
		+	|
		+	| -
		+	|String
	|-		|-
−	| Water	+	| Land
−	|Assimilation	+	|Vegetation
−	|VGROUP_PATH	+	|VEGETATION_DT
−	|	+	|Vegetation DT
		+	| -
	|		|
	|		|
		+	|seconds
		+	|Real
		+	|-
		+	| Land
		+	|Vegetation
		+	|WATER_UPTAKE
	|		|
		+	|0/1
		+	|Inactive/Active
		+	|1
		+	| -
		+	|Boolean
		+	|-
		+	| Land
		+	|Vegetation
		+	|WATER_UPTAKE_COMPENSATION_FACTOR
		+	|Factor for uptake compensation from lower layers if computed layer demand is not met if zero there will exist no compensation. If 1. total demand no met may come from lower layers
	|		|
	|		|
		+	|0.
		+	|
		+	|real
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Vegetation
		+	| rowspan="2" |WATER_UPTAKE_METHOD
		+	| rowspan="2" | -
		+	|1
		+	|according to root profile
		+	| rowspan="2" |1
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
		+	|-
		+	|2
		+	|SWAT based (exponential and thresholds)
		+	|-
		+	| rowspan="2" |Land
		+	| rowspan="2" |Vegetation
		+	| rowspan="2" |WATER_UPTAKE_STRESS_METHOD
		+	| rowspan="2" |if WATER_UPTAKE_METHOD = 1
		+	|1
		+	|Feddes
		+	| rowspan="2" |1
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
		+	|-
		+	|2
		+	|VanGenuchten
		+	|-
		+	| Land
		+	|Vegetation
		+	|WATER_STRESS
		+	|Connects/disconnects water limitation on plant growth
		+	|0/1
		+	|Inactive/Active
		+	|1
		+	| -
		+	|Boolean
	|}		|}
−	=== Module Consolidation===	+	==== Vegetation Parameters File ====
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleConsolidation.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 8,173:		Line 7,988:
	! scope="col" |Units		! scope="col" |Units
	! scope="col" |Type		! scope="col" |Type
−	|-	+	|-
−	| Water	+	| Land
−	|Consolidation	+	|Vegetation
−	|BOXFLUXES	+	|AGRIC_PRACT_ID
−	|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
−	|
	|		|
−	|-
−	| Water
−	|Consolidation
−	|COMPUTE_SHEAR_STRESS
−	|Compute shear stress or read from file
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Integer
−	|CONSOLIDATION	+	|-
−	|Specifies if consolidation is to be computed	+	| Land
		+	|Vegetation
		+	|FILENAME
		+	|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|String
−	|CONSOLIDATION_DT	+	|-
−	|Time step for consolidation	+	| Land
		+	|Vegetation
		+	|GRAZING_BIOMASS
		+	|grazed biomass
	|		|
	|		|
−	|-	+	|
−	| Water	+	|kh/ha.day
−	|Consolidation	+	|Real
−	|CONTINUOUS	+	|-
−	|Speficies if initialization is based in previous run	+	| Land
		+	|Vegetation
		+	|GRAZING_DAYS
		+	|Days of grazing (continuous)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Integer
−	|CSE_COEF	+	|-
−	|Coeficient to compute exponential increase of critical shear stress for erosion with depth	+	| Land
		+	|Vegetation
		+	|GRAZING_FRACTION_TO_MANURE
		+	|fraction of grazed biomass that goes to manure in same cell and day (0-1)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|DECAYMENT	+	|-
−	|Computes porosity decayment (compaction) inside the sediment compartment	+	| Land
		+	|Vegetation
		+	|GRAZING_MANURE_NFRACTION
		+	|fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|DECAYTIME	+	|-
−	|Decay factor for consolidation	+	| Land
		+	|Vegetation
		+	|GRAZING_MANURE_NUREAFRACTION
		+	|fraction of manure N that is Urea (0-1). The remainder will be organic N
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|INFINITE_CSE	+	|-
−	|Maximum critical shear stress for erosion	+	| Land
		+	|Vegetation
		+	|GRAZING_START_JULIANDAY
		+	|julian day when grazing will occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Integer
−	|MAX_THICKNESS	+	|-
−	|Maximum layer thickness allowed for a sediment layer	+	| Land
		+	|Vegetation
		+	|GRAZING_START_PLANTHU
		+	|Percentage of POTENTIAL YEARLY HU when grazing will occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|MIN_THICKNESS	+	|-
−	|Minimum thickness allowed for a sediment layer	+	| Land
		+	|Vegetation
		+	|HARVEST_EFFICIENCY
		+	|Efficiency for harvest operation (residue if lower than 1)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|OUTPUT_HDF	+	|-
−	|Output HDF results	+	| Land
		+	|Vegetation
		+	|HARVEST_JULIANDAY
		+	|julian day when harvest operation occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Integer
−	|OUTPUT_TIME	+	|-
−	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.	+	| Land
		+	|Vegetation
		+	|HARVEST_PLANTHU
		+	|Percentage of PLANT ACCUMULATED HU when harvest operation occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|SURFACE_CSE	+	|-
−	|Critical shear stress for erosion for the top layer	+	| Land
		+	|Vegetation
		+	|HARVESTKILL_JULIANDAY
		+	|julian day when harvestkill operation occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Integer
−	|TIME_SERIE	+	|-
−	|Output time series	+	| Land
		+	|Vegetation
		+	|HARVESTKILL_PLANTHU
		+	|Percentage of PLANT ACCUMULATED HU when harvestkill operation occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Consolidation	+	|Real
−	|TIME_SERIE_LOCATION	+	|-
−	|Path to time serie locations file	+	| Land
		+	|Vegetation
		+	|KILL_JULIANDAY
		+	|julian day when harvestkill operation occur
	|		|
	|		|
		+	|
		+	|
		+	|Integer
		+	|-
		+	| Land
		+	|Vegetation
		+	|KILL_PLANTHU
		+	|Percentage of PLANT ACCUMULATED HU when kill operation occur
	|		|
	|		|
−	|	+	|
−	|}	+	|
−		+	|Real
−	=== Module FreeVerticalMovement===	+	|-
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleFreeVerticalMovement.F90 Source Code]	+	| Land
−	{| class="wikitable"	+	|Vegetation
−	|-	+	|MATURITY_HU
−	! scope="col" |Project	+	|Total PLANT ACCUMULATED HU when reaching maturity
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Water
−	|FreeVerticalMovement
−	|CHS
−	|Hindered settling concentration threshold
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|FreeVerticalMovement	+	|Integer
−	|DEPOSITION	+	|-
−	|Compute deposition for particulate property	+	| Land
		+	|Vegetation
		+	|MINIMUM_BIOMASS_FOR_GRAZING
		+	|minimum biomass for grazing
	|		|
	|		|
−	|-	+	|
−	| Water	+	|kg/ha
−	|FreeVerticalMovement	+	|Real
−	| rowspan="2" |FREEVERT_IMPEXP_ADV	+	|-
−	| rowspan="2" |Coeficient to compute vertical movement through implicit or explicit methods	+	| Land
−	|0.0	+	|Vegetation
−	|Implicit	+	|NAME
−	|-	+	|
−	| Water
−	|FreeVerticalMovement
−	|1.0
−	|Explicit
−	|-
−	| Water
−	|FreeVerticalMovement
−	|KL
−	|Parameter to compute settling velocity based on cohesive sediment concentration
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|FreeVerticalMovement	+	|String
−	|KL1	+	|-
−	|Parameter to compute settling velocity based on cohesive sediment concentration	+	| Land
		+	|Vegetation
		+	|PLANTING_HUBASE
		+	|Percentage of POTENTIAL YEARLY HU when planting will occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|FreeVerticalMovement	+	|Real
−	|M	+	|-
−	|Parameter to compute settling velocity based on cohesive sediment concentration	+	| Land
		+	|Vegetation
		+	|PLANTING_JULIANDAY
		+	|Julian day when planting will occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|FreeVerticalMovement	+	|Integer
−	|ML	+	|-
−	|Parameter to compute settling velocity based on cohesive sediment concentration	+	| Land
−	|	+	|Vegetation
−	|	+	|TRAMPLING_BIOMASS
−	|-	+	|biomass not eaten but removed from plant and moved to soil, related to grazing efficiency
−	| Water
−	|FreeVerticalMovement
−	|SALTINT
−	|Definition of free vertical movement being function of salinity
−	|
−	|
−	|-
−	| Water
−	|FreeVerticalMovement
−	|SALTINTVALUE
−	|Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
−	|
−	|
−	|-
−	| Water
−	|FreeVerticalMovement
−	| rowspan="2" |WS_TYPE
−	| rowspan="2" |Method to compute settling velocity
−	|1
−	|Prescribe a constant settling velocity for particulate property
−	|-
−	| Water
−	|FreeVerticalMovement
−	|2
−	|Compute settling velocity as function of cohesive sediment concentration
−	|-
−	| Water
−	|FreeVerticalMovement
−	|ws_value
−	|
−	|
−	|
−	|-
−	| Water
−	|FreeVerticalMovement
−	|WS_VALUE
−	|Prescribed constant settling velocity
−	|
	|		|
	|		|
		+	|
		+	|kg/ha.day
		+	|Real
		+	|-
		+	| Land
		+	|Vegetation
		+	|VEGETATION_ID
		+	|crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database)
	|		|
	|		|
		+	|
		+	|
		+	|Integer
	|}		|}
−	=== Module Hydrodynamic===	+	==== Fertilization Parameters File ====
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamic.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 8,416:		Line 8,234:
	! scope="col" |Type		! scope="col" |Type
	|-		|-
−	| Water	+	| rowspan="2" | Land
−	|Hydrodynamic	+	| rowspan="2" |Vegetation
−	|ADV_METHOD_H	+	| rowspan="2" |EXPLICIT_PHOSPHORUS
−	|Defines the horizontal numerical method of advection.	+	| rowspan="2" |
−	|	+	|1
−	|	+	|Explicit add phosphorus if needed
		+	| rowspan="2" | -
		+	| rowspan="2" |
		+	| rowspan="2" |Boolean
	|-		|-
−	| Water	+	|0
−	|Hydrodynamic	+	|Add phosphorus if nitrogen needed (SWAT method)
−	|ADV_METHOD_V	+	|-
		+	| Land
		+	|Vegetation
		+	|FERTILIZER_APPLICATION_HU
		+	|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	| Land
		+	|Vegetation
		+	|FERTILIZER_APPLICATION_JDAY
		+	|julian day when pesticide application will occur
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|ATM_PRESSURE
−	|Checks if the user wants to consider the effect of the Atmospheric Pressure
	|		|
		+	|
		+	|
		+	|Integer
		+	|-
		+	| Land
		+	|Vegetation
		+	|FERTILIZER_APPLICATION_KG_HA
		+	|Amount of fertilizer applied
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="3" |ATM_PRESSURE_TYPE
−	| rowspan="3" |Defines the atmospheric reference field
−	|0
−	|no atmospheric reference field
−	|-
−	| Water
−	|Hydrodynamic
−	|1
−	|use "atmospheric pressure" from Module Atmosphere
−	|-
−	| Water
−	|Hydrodynamic
−	|2
−	|use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
−	|-
−	| Water
−	|Hydrodynamic
−	|BAROCLINIC
−	|Checks if the user pretends to compute the baroclinic pressure
−	|
−	|
−	|-
−	| Water
−	|Hydrodynamic
−	|BAROCLINIC_METHOD
	|		|
		+	|
		+	|kg/ha
		+	|Real
		+	|-
		+	| Land
		+	|Vegetation
		+	|FERTILIZER_CONT_DAYS
		+	|how many days of continuous application (read if FERTILIZER_CONT_ON : 1)
	|		|
	|		|
		+	|
		+	|
		+	|Integer
	|-		|-
−	| Water	+	| rowspan="2" |Land
−	|Hydrodynamic	+	| rowspan="2" |Vegetation
−	|BAROCLINIC_OBC_DISCRET	+	| rowspan="2" |FERTILIZER_CONT_ON
−	|	+	| rowspan="2" |
−	|	+	|1
−	|	+	|If this is a continuous fertilizer application
		+	| rowspan="2" | -
		+	| rowspan="2" |
		+	| rowspan="2" |Boolean
	|-		|-
−	| Water	+	|0
−	|Hydrodynamic	+	|or absent if not
−	|BAROCLINIC_POLIDEGREE	+	|-
−	|	+	| Land
		+	|Vegetation
		+	|FERTILIZER_ID
		+	|Fertilizer used in autofertilization (see fertilizer database)
	|		|
	|		|
		+	|
		+	|
		+	|Integer
	|-		|-
−	| Water	+	| rowspan="2" |Land
−	|Hydrodynamic	+	| rowspan="2" |Vegetation
−	| rowspan="3" |BAROCLINIC_RADIATION	+	| rowspan="2" |N_STRESS_TYPE
−	| rowspan="3" |Check if the user wants to radiate internal tides	+	| rowspan="2" |
−	|0
−	|No radiation
−	|-
−	| Water
−	|Hydrodynamic
	|1		|1
−	|Horizontal	+	|NTarget
		+	| rowspan="2" | -
		+	| rowspan="2" |
		+	| rowspan="2" |Integer
	|-		|-
−	| Water
−	|Hydrodynamic
	|2		|2
−	|Vertical	+	|Annual Max approach
−	|-	+	|-
−	| Water	+	| Land
−	|Hydrodynamic	+	|Vegetation
−	|BAROCLINIC_WAVE_DT	+	|NITROGEN_ANNUAL_MAX
		+	|Maximum amount of fertilizer in one year
	|		|
	|		|
		+	|
		+	|kg/ha
		+	|Real
		+	|-
		+	| Land
		+	|Vegetation
		+	|NITROGEN_APPLICATION_MAX
		+	|Maximum amount of fertilizer in one application
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|begin_dragcoef
	|		|
		+	|
		+	|kg/ha
		+	|Real
		+	|-
		+	| Land
		+	|Vegetation
		+	|NITROGEN_TRESHOLD
		+	|Percentage of stress below which autofertilization starts (0-1)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|BIHARMONIC	+	|-
−	|Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation	+	|Land
		+	|Vegetation
		+	|PESTICIDE_APPLICATION_HU
		+	|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|BIHARMONIC_COEF	+	|-
−	|horizontal diffusion ocefficent used when the bi-harmonic option is on	+	|Land
		+	|Vegetation
		+	|PESTICIDE_APPLICATION_JDAY
		+	|julian day when pesticide application will occur
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Integer
−	|BOTTOMVISC_COEF	+	|-
−	|Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer	+	|Land
		+	|Vegetation
		+	|PESTICIDE_APPLICATION_KG_HA
		+	|Amount of pesticide applied
	|		|
	|		|
−	|-	+	|
−	| Water	+	|kg/ha
−	|Hydrodynamic	+	|Real
−	|BOTTOMVISC_LIM	+	|-
−	|Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.	+	|Land
		+	|Vegetation
		+	|PESTICIDE_ID
		+	|Pesticide used in this application (see pesticide database)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Integer
−	|BOTTOMWATERFLUX	+	|-
−	|Checks if the user want to consider the effect of the soil infiltration or consolidation	+	|Land
		+	|Vegetation
		+	|PESTICIDE_CONT_DAYS
		+	|how many days of continuous application (read if PESTICIDE_CONT_ON : 1)
	|		|
	|		|
		+	|
		+	|
		+	|Integer
	|-		|-
−	| Water	+	| rowspan="2" |Land
−	|Hydrodynamic	+	| rowspan="2" |Vegetation
−	|BOUNDARYBAROCLINIC	+	| rowspan="2" |PESTICIDE_CONT_ON
−	|Check if the user wants to compute the baroclinic force in the boundary faces	+	| rowspan="2" |
−	|	+	|1
−	|	+	|If this is a continuous pesticide application
		+	| rowspan="2" | -
		+	| rowspan="2" |
		+	| rowspan="2" |Boolean
	|-		|-
−	| Water	+	|0
−	|Hydrodynamic	+	|or absent if not
−	|BOUNDARYFILE	+	|-
−	|The file name of 3D file where the relaxation coefficient are.	+	| Land
		+	|Vegetation
		+	|PHOSPHORUS_ANNUAL_MAX
		+	|only read if EXPLICIT_PHOSPHORUS : 1
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|BOXFLUXES	+	|-
−	|The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes	+	| Land
		+	|Vegetation
		+	|PHOSPHORUS_APPLICATION_MAX
		+	|only read if EXPLICIT_PHOSPHORUS : 1
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|BRCORIOLIS	+	|-
−	|Checks if the user wants to relax the coriolis force	+	| Land
		+	|Vegetation
		+	|PHOSPHORUS_TRESHOLD
		+	|only read if EXPLICIT_PHOSPHORUS : 1
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|}
		+
		+	==== Growth Database File ====
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Water	+	! scope="col" |Project
−	|Hydrodynamic	+	! scope="col" |Module
−	|BRFORCE	+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	|Land
		+	|Vegetation
		+	|BASE_TEMPERATURE
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|BRROX	+	|-
−	|Checks if the user wants to relax the baroclinic force	+	|Land
		+	|Vegetation
		+	|BIOMASS_ENERGY_RATIO
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|BRTRANSPORT
−	|Checks if the user wants to relax the horizontal momentum transport
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|BIOMASS_ENERGY_RATIO_HIGH
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|BRVELOCITY
−	|Checks if the user wants to relax the horizontal velocity
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|BRWATERLEVEL	+	|-
−	|Checks if the user wants to relax the water level	+	|Land
		+	|Vegetation
		+	|BIOMASS_FRAC_REMOVED_DORMANCY
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|CELERITY_TYPE
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|CANOPY_HEIGHT_MAX
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|CENTRIFUGAL
−	|Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|CO2_HIGH
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|CONSERVATIVE_HOR_DIF
−	|Check if the user wants to compute the horizontal diffusion in a conservative way.
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|CONTINUOUS	+	|-
−	|Checks if the user pretends to continue a old run	+	|Land
		+	|Vegetation
		+	|GROWFRACTION_1
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|CORIOLIS
−	|Checks  if the user pretends to compute the coriolis force effect
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|GROWFRACTION_2
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|CORRECT_WATERLEVEL
−	|check if the user wants to corrected the water level when it is lower than a reference water level
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|CYCLIC_BOUNDARY	+	|-
−	|Check if the user wants to impose a CYCLIC boundary condition	+	|Land
		+	|Vegetation
		+	|GROWFRACTION_LAIDECLINE
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="3" |CYCLIC_DIRECTION
−	| rowspan="3" |Check along which direction the user wants to impose a CYCLIC boundary condition
−	|DirectionX_
−	|Direction x
−	|-
−	| Water
−	|Hydrodynamic
−	|DirectionY_
−	|Direction Y
−	|-
−	| Water
−	|Hydrodynamic
−	|DirectionXY_
−	|Directions X and Y
−	|-
−	| Water
−	|Hydrodynamic
−	|DATA_ASSIMILATION
−	|Checks if the user want to impose a flow relaxation boundary condition. By default do not use flow relaxation boundary condition
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|LAI_MAX
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|DEADZONE
−	|Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|DEADZONE_FILE	+	|-
−	|Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.	+	|Land
		+	|Vegetation
		+	|LAI_MIN_DORMANCY
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|DECAY_IN
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|MINIMUM_HARVEST_INDEX
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|DECAY_OUT
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_HARVEST_INDEX
	|		|
−	|
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="2" |DISCRETIZATION
−	| rowspan="2" |Check what type of implicit discretization in time is choose for the global equations
−	|1
−	|Abbott Scheme - 4 equations per iteration
−	|-
−	| Water
−	|Hydrodynamic
−	|2
−	|Leendertse Scheme - 6 equations per iteration
−	|-
−	| Water
−	|Hydrodynamic
−	|DT_OUTPUT_TIME
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_LAIMAXFRACTION_1
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|ENERGY
−	|Check if the user want to compute the potential and kinetic energy of the entire domain
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|ENERGY_DT	+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_LAIMAXFRACTION_2
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|ENERGY_WINDOW	+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_NITROGENFRACTION_N1
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|ENTERING_WAVE	+	|-
−	|Checks if the wave imposed in the boundary is entering in the domain or leaving it	+	|Land
		+	|Vegetation
		+	|OPTIMAL_NITROGENFRACTION_N2
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="5" |EVOLUTION
−	| rowspan="5" |Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
−	|No_hydrodynamic
−	|No hydrodynamic
−	|-
−	| Water
−	|Hydrodynamic
−	|Read_File
−	|Read File
−	|-
−	| Water
−	|Hydrodynamic
−	|Residual_hydrodynamic
−	|Residual hydrodynamic
−	|-
−	| Water
−	|Hydrodynamic
−	|Solve_Equations
−	|Solve equations
−	|-
−	| Water
−	|Hydrodynamic
−	|Vertical1D
−	|1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
−	|-
−	| Water
−	|Hydrodynamic
−	|HMIN_ADVECTION
−	|The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_NITROGENFRACTION_N3
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|HMIN_CHEZY
−	|Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|HMIN_CONVECTION	+	|-
−	|	+	|Land
		+	|Vegetation
		+	|OPTIMAL_PHOSPHORUSFRACTION_P1
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|
−	|HORIZONTALADVECTION	+	|Real
−	|Checks  if the user pretends to compute the horizontal advection effect	+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_PHOSPHORUSFRACTION_P2
		+	|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|HORIZONTALCONVECTION	+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_PHOSPHORUSFRACTION_P3
		+	|
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|OPTIMAL_TEMPERATURE
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|HORIZONTALDIFFUSION
−	|Checks  if the user pretends to compute the horizontal diffusion effect
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|IMPLICIT_HORADVECTION	+	|-
−	|Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly	+	|Land
		+	|Vegetation
		+	|PLANT_TYPE
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|IMPLICIT_HORCONVECTION
	|		|
		+	|
		+	|
		+	|Integer
		+	|-
		+	|Land
		+	|Vegetation
		+	|RADIATION_EXTINCTION_COEF
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="3" |IMPLICIT_VERTADVECTION
−	| rowspan="3" |Check if the vertical advection is implicit
−	|0.0
−	|Explicit
−	|-
−	| Water
−	|Hydrodynamic
−	|0.5
−	|Hybrid for option in (0.0, 1.0)
−	|-
−	| Water
−	|Hydrodynamic
−	|1.0
−	|Implicit
−	|-
−	| Water
−	|Hydrodynamic
−	|IMPLICIT_VERTCONVECTION
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|ROOT_DEPTH_MAX
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="3" |IMPLICIT_VERTDIFFUSION
−	| rowspan="3" |Check if the vertical advection is implicit
−	|0.0
−	|Explicit
−	|-
−	| Water
−	|Hydrodynamic
−	|0.5
−	|Hybrid for option in (0.0, 1.0)
−	|-
−	| Water
−	|Hydrodynamic
−	|1.0
−	|Implicit
−	|-
−	| Water
−	|Hydrodynamic
−	|INERTIAL_PERIODS
−	|The period after which the total effect of the baroclinic force is compute
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|RUE_DECLINE_RATE
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|INITIAL_ELEVATION
−	|Checks if the user wants to impose a initial elevation
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|INITIAL_ELEVATION_VALUE	+	|-
−	|The user define with this keyword the initial elevation value	+	|Land
		+	|Vegetation
		+	|TREE_MAXIMUMBIOMASS
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|INITIAL_VEL_U
−	|Checks  if the user pretends to impose a initial U (X) velocity
	|		|
−	|	+	|
−	|-	+	|
−	| Water	+	|Real
−	|Hydrodynamic	+	|-
−	|INITIAL_VEL_V	+	|Land
−	|Checks  if the user pretends to impose a initial V (Y) velocity	+	|Vegetation
		+	|TREE_YEARSTOMATURITY
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|INVERTED_BAROMETER_COEF
−	|The user can change the inverted barometer solution using this calibration coefficient
−	|1
−	|Imposed water level using the inverted barometer simplified solution
−	|-
−	| Water
−	|Hydrodynamic
−	|INVERTED_BAROMETER_REF_ATM_PRESSURE
−	|The user can also change the reference atmospheric pressure of the inverted barometer solution via this keyword
−	|101325
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Integer
−	|INTERNAL_CELERITY	+	|-
		+	|Land
		+	|Vegetation
		+	|YELD_NITROGENFRACTION
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|LOCAL_DENSITY	+	|-
−	|Check if the user want to divide the baroclinic pressure by the local density to compute. if this option is false is used the reference density	+	|Land
		+	|Vegetation
		+	|YELD_PHOSPHORUSFRACTION
		+	|
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|}
		+
		+	==== Pesticide Database File ====
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Water	+	! scope="col" |Project
−	|Hydrodynamic	+	! scope="col" |Module
−	| rowspan="7" |LOCAL_SOLUTION	+	! scope="col" |Keyword
−	| rowspan="7" |Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions	+	! scope="col" |Keyword description
−	|1	+	! scope="col" |Options
−	|No local solution	+	! scope="col" |Option description
−	|-	+	! scope="col" |Default Value
−	| Water	+	! scope="col" |Units
−	|Hydrodynamic	+	! scope="col" |Type
−	|2	+	|-
−	|Submodel	+	|Land
−	|-	+	|Vegetation
−	| Water	+	|PESTICIDE_APPLICATION_JDAY
−	|Hydrodynamic	+	|julian day when pesticide application will occur
−	|3
−	|AssimilationField
−	|-
−	| Water
−	|Hydrodynamic
−	|4
−	|Gauge
−	|-
−	| Water
−	|Hydrodynamic
−	|5
−	|AssimilaPlusSubModel
−	|-
−	| Water
−	|Hydrodynamic
−	|6
−	|GaugePlusSubModel
−	|-
−	| Water
−	|Hydrodynamic
−	|7
−	|AssimilaGaugeSubModel
−	|-
−	| Water
−	|Hydrodynamic
−	|MIN_COMPONENT
−	|The minimum component of the radiative wave below which the radiation process is canceled
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Integer
−	|MIN_VELOCITY	+	|-
−	|The minimum velocity in the open boundary below which the radiation is canceled	+	|Land
		+	|Vegetation
		+	|PESTICIDE_APPLICATION_KG_HA
		+	|Amount of pesticide applied
		+	|
	|		|
		+	|
		+	|kg/ha
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|PESTICIDE_ID
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|MIN_WATERLEVEL
−	|reference level below which the water level is corrected.
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Integer
−	|MINVEL_BAROCLINIC	+	|-
		+	|Land
		+	|Vegetation
		+	|PESTICIDE_NAME
	|		|
	|		|
	|		|
		+	|
		+	|
		+	|String
		+	|}
		+
		+	==== Fertilizer Database File ====
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Water	+	! scope="col" |Project
−	|Hydrodynamic	+	! scope="col" |Module
−	|MISSING_NULL	+	! scope="col" |Keyword
−	|Check if the user wants to replace the missing values by zero	+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	|Land
		+	|Vegetation
		+	|AMMONIA_FRACTION_IN_MINERAL_N
		+	|
		+	|
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|FERTILIZER_ID
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|MOMENTUM_DISCHARGE
−	|Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Integer
−	|NH_ALPHA_LU	+	|-
		+	|Land
		+	|Vegetation
		+	|FERTILIZER_FRACTION_IN_SURFACE
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|NH_IMPLICIT_COEF_W	+	|-
		+	|Land
		+	|Vegetation
		+	|FERTILIZER_NAME
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|String
−	|NH_MAXIT	+	|-
		+	|Land
		+	|Vegetation
		+	|MINERAL_N_FRACTION_IN_FERTILIZER
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|
−	|Hydrodynamic	+	|Real
−	|NH_NORMALIZED_RESIDUAL	+	|-
		+	|Land
		+	|Vegetation
		+	|MINERAL_P_FRACTION_IN_FERTILIZER
		+	|
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|ORGANIC_N_FRACTION_IN_FERTILIZER
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|NH_RESIDUAL
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|ORGANIC_P_FRACTION_IN_FERTILIZER
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|NONHYDROSTATIC
−	|Checks if the user want to compute the effect of local vertical acceleration over the pressure field
	|		|
	|		|
		+	|
		+	|
		+	|Real
		+	|}
		+
		+	==== Feddes Database File ====
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Water	+	! scope="col" |Project
−	|Hydrodynamic	+	! scope="col" |Module
−	|NORMAL_BAROCLINIC	+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_H1
		+	|higher head for transpiration (saturation and oxygen loss)
	|		|
	|		|
		+	|
		+	|m
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_H2
		+	|1st optimal head for transpiration
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|NULL_BOUND_HORADV
−	|Checks if the user wants to assume null horizontal advection in the open boundary
	|		|
		+	|
		+	|m
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_H3
		+	|2nd optimal head for transpiration
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|NULL_BOUND_HORCONV
	|		|
		+	|
		+	|m
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_H3H
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|OBSTACLE
−	|Checks if the user want to parameterize the influence of an
−	OBSTACLE in the flow, giving a determined drag coefficient
−
	|		|
		+	|
		+	|m
		+	|Real
		+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_H3L
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|OUTPUT_FACES
−	|Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.
	|		|
	|		|
−	|-	+	|
−	| Water	+	|m
−	|Hydrodynamic	+	|Real
−	|OUTPUT_PROFILE	+	|-
−	|Perform profile outputs in HDF5 format	+	|Land
		+	|Vegetation
		+	|FEDDES_H4
		+	|lower head  for transpiration (wilting)
	|		|
	|		|
−	|-	+	|
−	| Water	+	|m
−	|Hydrodynamic	+	|Real
−	|OUTPUT_TIME	+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_R2L
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|m
−	|Hydrodynamic	+	|Real
−	|POTENTIAL_ALGORITHM	+	|-
		+	|Land
		+	|Vegetation
		+	|FEDDES_R2H
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water	+	|m
−	|Hydrodynamic	+	|Real
−	| rowspan="4" |RADIATION	+	|-
−	| rowspan="4" |Checks if the user wants to impose the Flather 1974 radiation boundary condition or other	+	|rowspan="3" |Land
−	|0	+	|rowspan="3" |Vegetation
−	|No Radiation	+	|rowspan="3" |FEDDES_TYPE
−	|-	+	|rowspan="3" |
−	| Water
−	|Hydrodynamic
	|1		|1
−	|FlatherWindWave_	+	|Normal
−	|-	+	|rowspan="3" | 1
−	| Water	+	|rowspan="3" | -
−	|Hydrodynamic	+	|rowspan="3" |Integer
		+	|-
	|2		|2
−	|FlatherLocalSolution_	+	|With points
−	|-	+	|-
−	| Water	+	|3
−	|Hydrodynamic	+	|Variable consoant the transpiration
−	|3	+	|-
−	|BlumbergKantha_	+	|Land
−	|-	+	|Vegetation
−	| Water	+	|SALINITY_STRESS_SLOPE
−	|Hydrodynamic
−	|RAMP
−	|Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
−	|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|RAMP_START
−	|This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
	|		|
	|		|
−	|-	+	|
−	| Water
−	|Hydrodynamic
−	|RECORDING
−	|Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
	|		|
	|		|
−	|-	+	|-
−	| Water	+	|Land
−	|Hydrodynamic	+	|Vegetation
−	|REF_BOUND_WATERLEVEL	+	|SALINITY_STRESS_THRESHOLD
	|		|
	|		|
	|		|
−	|-	+	|
−	| Water
−	|Hydrodynamic
−	|RELAX_REF_VEL
−	|
	|		|
	|		|
		+	|-
		+	|rowspan="3" |Land
		+	|rowspan="3" |Vegetation
		+	|rowspan="3" |STRESS_INTERACTION
		+	|rowspan="3" |
		+	|1
		+	|Additive
		+	|rowspan="3" | 1
		+	|rowspan="3" | -
		+	|rowspan="3" |Integer
		+	|-
		+	|2
		+	|Multiplicative
		+	|-
		+	|3
		+	|Min of all
	|-		|-
−	| Water	+	|-
−	|Hydrodynamic	+	|rowspan="2" |Land
−	|RESIDUAL	+	|rowspan="2" |Vegetation
−	|Check if the user want to compute the residual flow	+	|rowspan="2" |USE_SALINITY
		+	|rowspan="2" |
		+	|1
		+	|Yes
		+	|rowspan="2" | 0
		+	|rowspan="2" | -
		+	|rowspan="2" |Boolean
		+	|-
		+	|0
		+	|No
		+	|-
		+	|Land
		+	|Vegetation
		+	|VEGETATION_ID
		+	|
	|		|
	|		|
		+	|
		+	|
		+	|Integer
		+	|}
		+
		+	==MOHID Water==
		+
		+	=== Module Assimilation===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleAssimilation.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|RESTART_FILE_OUTPUT_TIME	+	|COLD_RELAX_PERIOD
−	|Output Time to write restart files	+	|Period of time along which relaxation has a linear increase
−	|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|RESTART_FILE_OVERWRITE
−	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|SLIPPING_CONDITION
−	|Checks if the user want to consider the slipping condition for horizontal diffusion
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|SLOWSTART	+	|DESCRIPTION
−	|Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplied by a coefficient that has linear evolution between 0 and 1.	+	|Short description about the assimilation property
−	By default this period is zero seconds	+	|
		+	|
		+	|
	|		|
	|		|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Assimilation
		+	| rowspan="2" |DIMENSION
		+	| rowspan="2" |Number of dimensions of the assimilation field
		+	|2
		+	|Two-Dimensional property
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|3
		+	|Three-Dimensional property
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|STATISTICS	+	|NAME
−	|Checks out if the user pretends the statistics of the hydrodynamic properties	+	|Name of the assimilation property
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|STATISTICS_FILE
−	|The statistics definition file of the hydrodynamic properties
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|SUBMODEL	+	|OUTPUT_HDF
−	|Check if the user wants to run this model as a submodel	+	|Output HDF results for assimilation property
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|SURFACEWATERFLUX
−	|Checks if the user want to consider the effect of precipitation and evaporation
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|TIDE	+	|OUTPUT_TIME
−	|Checks if the user pretends to impose a wave tide in the open boundary	+	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|TIDEPOTENTIAL
−	|Checks if the user want to consider the effect of the potential tide
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
	|TIME_SERIE		|TIME_SERIE
−	|Checks out if the user pretends to write a time serie	+	|Output time series for assimilation property
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
	|TIME_SERIE_LOCATION		|TIME_SERIE_LOCATION
		+	|Path to time serie locations file
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|TLAG_FILE
−	|The name file where are the relaxation times defined for the radiation boundary condition
	|		|
	|		|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Assimilation
		+	| rowspan="3" |TYPE_ZUV
		+	| rowspan="3" |Reference of the field to the grid.
		+	|U
		+	|Variable is referenced to the XX faces of the control volume
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|V
		+	|Variable is referenced to the YY faces of the control volume
		+	|-
		+	|Z
		+	|Variable is defined in the center of the control volume
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|TVD_METHOD_H	+	|UNITS
		+	|Assimilation property units
		+	|
		+	|
	|		|
	|		|
Line 9,289:		Line 9,209:
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Assimilation
−	|TVD_METHOD_V	+	|VGROUP_PATH
		+	|
		+	|
		+	|
	|		|
	|		|
	|		|
		+	|}
		+
		+	=== Module Consolidation===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleConsolidation.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Water	+	! scope="col" |Project
−	|Hydrodynamic	+	! scope="col" |Module
−	| rowspan="3" |UP_CENTER	+	! scope="col" |Keyword
−	| rowspan="3" |Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme	+	! scope="col" |Keyword description
−	|0.0	+	! scope="col" |Options
−	|Centred differences	+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|0.5	+	|BOXFLUXES
−	|Hybrid for option in (0,1)	+	|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|1.0	+	|COMPUTE_SHEAR_STRESS
−	|Upstream	+	|Compute shear stress or read from file
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	| rowspan="2" |VELNORMALBOUNDARY	+	|CONSOLIDATION
−	| rowspan="2" |Checks the velocities the user want to impose in the exterior faces	+	|Specifies if consolidation is to be computed
−	|1	+	|
−	|null value	+	|
−	|-	+	|
−	| Water
−	|Hydrodynamic
−	|2
−	|null gradient
−	|-
−	| Water
−	|Hydrodynamic
−	| rowspan="2" |VELTANGENTIALBOUNDARY
−	| rowspan="2" |Checks the velocities the user want to impose between two boundary points
−	|1
−	|null value
−	|-
−	| Water
−	|Hydrodynamic
−	|2
−	|null gradient
−	|-
−	| Water
−	|Hydrodynamic
−	|VERTICAL_AXISYMMETRIC
−	|Checks if the user wants to simulate implicit the sea level evolution (by default is ADI). This option only works if the flow has only one horizontal dimension. (0 - ADI; 1 - X always implicit; 2 - Y always implicit)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|VERTICALADVECTION	+	|CONSOLIDATION_DT
−	|Checks  if the user pretends to compute the vertical advection effect	+	|Time step for consolidation
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|VERTICALCONVECTION
	|		|
	|		|
Line 9,358:		Line 9,274:
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|VERTICALDIFFUSION	+	|CONTINUOUS
−	|Checks  if the user pretends to compute the vertical diffusion effect	+	|Speficies if initialization is based in previous run
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|VMIN_CHEZY
−	|Checks the minimum velocity (Vmin_Chezy) below which the chezy coefficient is constant if the water column is smaller than Hmin_Chezy. By default Vmin_Chezy is equal to 0.10 m/s
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|VOLUME_RELATION_MAX	+	|CSE_COEF
		+	|Coeficient to compute exponential increase of critical shear stress for erosion with depth
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|VOLUMEVARIATION
−	|Checks  if the user pretends to compute the volume variation effect
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|WATER_DISCHARGES	+	|DECAYMENT
−	|Check if the user want to water discharges	+	|Computes porosity decayment (compaction) inside the sediment compartment
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Hydrodynamic
−	|WATERCOLUMN2D
−	|water column thickness below which the 3D processes are disconnected
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|WATERLEVEL_MAX_MIN	+	|DECAYTIME
−	|Computes the spatial maps of the maximum and of the minimum water elevation.	+	|Decay factor for consolidation
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|WAVE_DIRECTION	+	|INFINITE_CSE
−	|The user with this keyword give a direction to a wave entering the domain	+	|Maximum critical shear stress for erosion
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|WAVE_STRESS	+	|MAX_THICKNESS
−	|Checks if the user want to consider the effect of the waves stress. By default the waves stress is not compute	+	|Maximum layer thickness allowed for a sediment layer
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	| rowspan="3" |WIND	+	|MIN_THICKNESS
−	| rowspan="3" |Checks if the user want to consider the effect of the wind stress. By default the wind stress is not computed	+	|Minimum thickness allowed for a sediment layer
−	|0	+	|
−	|No wind forcing	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|1	+	|OUTPUT_HDF
−	|wind forcing	+	|Output HDF results
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|2	+	|OUTPUT_TIME
−	|wind forcing with a smooth start	+	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Hydrodynamic	+	|Consolidation
−	|WIND_SMOOTH_PERIOD	+	|SURFACE_CSE
−	|The user specify the wind smooth period	+	|Critical shear stress for erosion for the top layer
	|		|
	|		|
Line 9,446:		Line 9,372:
	|		|
	|		|
−	|}
−
−	=== Module HydrodynamicFile===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamicFile.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Water
		+	|Consolidation
		+	|TIME_SERIE
		+	|Output time series
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Consolidation
		+	|TIME_SERIE_LOCATION
		+	|Path to time serie locations file
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module FreeVerticalMovement===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleFreeVerticalMovement.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
	! scope="col" |Module		! scope="col" |Module
	! scope="col" |Keyword		! scope="col" |Keyword
Line 9,463:		Line 9,409:
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	| rowspan="2" |BAT_INTEGRATION_TYPE	+	|CHS
−	| rowspan="2" |It is possible to calculate the new bathymetry (spacial integration) using two different options	+	|Hindered settling concentration threshold
−	|MaxVal_Type	+	|
−	|Each new integrated cell has the maximum value of the cells used to do the integration of that cell	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	|MeanVal_Type	+	|DEPOSITION
−	|The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.	+	|Compute deposition for particulate property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |FreeVerticalMovement
		+	| rowspan="2" |FREEVERT_IMPEXP_ADV
		+	| rowspan="2" |Coeficient to compute vertical movement through implicit or explicit methods
		+	|0.0
		+	|Implicit
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|1.0
		+	|Explicit
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	|DT_HYDROFILE	+	|KL
−	|Time Step of the hydrodynamic file	+	|Parameter to compute settling velocity based on cohesive sediment concentration
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|IN_FIELD
−	|Input File Name
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	| rowspan="2" |IN_FILE_TYPE	+	|KL1
−	| rowspan="2" |Input File Type	+	|Parameter to compute settling velocity based on cohesive sediment concentration
−	|BeginEnd_type	+	|
		+	|
		+	|
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|M2_Tide_type
	|		|
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	| rowspan="2" |IN_FILE_VERSION	+	|M
−	| rowspan="2" |Input File Version	+	|Parameter to compute settling velocity based on cohesive sediment concentration
−	|1
−	|Only available if LOAD_TO_MEMORY = 0
−	|-
−	| Water
−	|HydrodynamicFile
−	|2
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|LOAD_TO_MEMORY
−	|Load all information to memory
	|		|
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|N_ITEGRATION_CELLS
−	|Number of cells that will be integrated (the integration space step)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	|NEW_BATIM	+	|ML
−	|Gets the name of the new bathymetry	+	|Parameter to compute settling velocity based on cohesive sediment concentration
	|		|
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|OUT_FIELD
−	|Ouput Data File
	|		|
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	| rowspan="2" |OUT_FILE_VERSION
−	| rowspan="2" |Controls the version of the output file
−	|1
	|		|
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	|2	+	|SALTINT
		+	|Definition of free vertical movement being function of salinity
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|SPACE_INTEGRATION
−	|Verifies if the integration of fluxes in space is to be done
	|		|
	|		|
−	|-
−	| Water
−	|HydrodynamicFile
−	|TIME_INTEGRATION
−	|Performs an integration in time,
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|HydrodynamicFile	+	|FreeVerticalMovement
−	|WINDOW	+	|SALTINTVALUE
−	|It is possible to define a window inside a bathymetry, where we want to record values to the hydrodynamic file	+	|Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |FreeVerticalMovement
		+	| rowspan="2" |WS_TYPE
		+	| rowspan="2" |Method to compute settling velocity
		+	|1
		+	|Prescribe a constant settling velocity for particulate property
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|Compute settling velocity as function of cohesive sediment concentration
		+	|-
		+	| Water
		+	|FreeVerticalMovement
		+	|WS_VALUE
		+	|Prescribed constant settling velocity
	|		|
	|		|
Line 9,577:		Line 9,525:
	|}		|}
−	=== Module InterfaceSedimentWater===	+	=== Module Hydrodynamic===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleInterfaceSedimentWater.F90 Source Code]	+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamic.F90 Source Code]
	{| class="wikitable"		{| class="wikitable"
	|-		|-
Line 9,592:		Line 9,540:
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|begin_diff_coef	+	|ADV_METHOD_H
		+	|Defines the horizontal numerical method of advection.
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|BENTHOS
−	|Compute property benthic ecological processes
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|BOX_TIME_SERIE	+	|ADV_METHOD_V
−	|Outputs property results in box time series
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|BOXFLUXES
−	|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|CEQUALW2
−	|Compute property CEQUALW2 benthic ecological processes
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|CONSOLIDATION	+	|ATM_PRESSURE
−	|Activates consolidation processes as well as erosion from consolidated sediment compartment	+	|Checks if the user wants to consider the effect of the Atmospheric Pressure
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|DEPOSITION
−	|Compute property deposition
	|		|
−	|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|DESCRIPTION
−	|Brief description of the property
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="3" |Water
−	|InterfaceSedimentWater	+	| rowspan="3" |Hydrodynamic
−	|DESCRIPTION	+	| rowspan="3" |ATM_PRESSURE_TYPE
−	|Description of the rate to perform output	+	| rowspan="3" |Defines the atmospheric reference field
−	|	+	|0
−	|	+	|no atmospheric reference field
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|1
		+	|use "atmospheric pressure" from Module Atmosphere
		+	|-
		+	|2
		+	|use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|DETRITUS	+	|BAROCLINIC
−	|Compute property as detritus	+	|Checks if the user pretends to compute the baroclinic pressure
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|EROSION
−	|Compute property erosion
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|FIRSTPROP	+	|BAROCLINIC_METHOD
−	|Name of the first property involved in the rate
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|MASS_LIMITATION
−	|Property mass is finite
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|MASS_MIN
−	|Minimum mass allowed for the property if MASS_LIMITATION is on. Values of zero are allowed.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|NAME	+	|BAROCLINIC_OBC_DISCRET
−	|Name of the property
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|NAME
−	|Name of the rate to perform output
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|OLD
−	|Initialization is made based on previous run (overrides FillMatrix keywords)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|OUTPUT_HDF	+	|BAROCLINIC_POLIDEGREE
−	|Outputs property results in HDF5 format
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|OUTPUT_SHEAR_STRESS
−	|Output shear stress in HDF format
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|OUTPUT_TIME
−	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="3" |Water
−	|InterfaceSedimentWater	+	| rowspan="3" |Hydrodynamic
−	|PARTICULATE	+	| rowspan="3" |BAROCLINIC_RADIATION
−	|Property physical state: 0 - Dissolved; 1 - Particulate	+	| rowspan="3" |Check if the user wants to radiate internal tides
−	|	+	|0
−	|	+	|No radiation
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|1
		+	|Horizontal
		+	|-
		+	|2
		+	|Vertical
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|REFERENCE_DEPTH	+	|BAROCLINIC_WAVE_DT
−	|Reference depth below which shear stress is limited. Keyword is only read if SHEAR_STRESS_LIMITATION is on.
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|REFERENCE_SHEAR_STRESS
−	|Shear stress value assumed in limited cells when SHEAR_STRESS_LIMITATION is on
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|RESTART_FILE_OUTPUT_TIME
−	|Output Time to write restart files
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|RESTART_FILE_OVERWRITE	+	|begin_dragcoef
−	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|SAND_TRANSPORT
−	|Compute sand tranport
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|SECONDPROP
−	|Name of the second property involved in the rate
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|SEDIMENT_FLUXES	+	|BIHARMONIC
−	|Compute property fluxes between interface sediment-water and sediment column	+	|Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|SEDIMENT_WATER_FLUXES
−	|Compute property fluxes between sediment and water column
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|SHEAR_STRESS_LIMITATION	+	|BIHARMONIC_COEF
−	|Limit shear stress values in shallow zones	+	|horizontal diffusion ocefficent used when the bi-harmonic option is on
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|STATISTICS_SHEAR
−	|Perform statistics to shear velocity
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|STATISTICS_SHEAR_FILE	+	|BOTTOMVISC_COEF
−	|Path to statistics input data file. Only read if STATISTICS_SHEAR is on.	+	|Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|TIME_SERIE	+	|BOTTOMVISC_LIM
−	|Outputs property results in time series	+	|Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|TIME_SERIE_LOCATION
−	|Path to time serie locations file
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|UNITS	+	|BOTTOMWATERFLUX
−	|Property units	+	|Checks if the user want to consider the effect of the soil infiltration or consolidation
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|InterfaceSedimentWater
−	|WATER_FLUXES
−	|Compute property fluxes to/from water column
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|InterfaceSedimentWater	+	|Hydrodynamic
−	|WAVETENSION	+	|BOUNDARYBAROCLINIC
−	|Compute wave induced shear stress	+	|Check if the user wants to compute the baroclinic force in the boundary faces
	|		|
	|		|
Line 9,852:		Line 9,720:
	|		|
	|		|
−	|}
−
−	=== Module Jet===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleJet.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|BOTTOM_SALINITY	+	|BOUNDARYFILE
−	|ambient bottom salinity when a LINEAR water column is admitted	+	|The file name of 3D file where the relaxation coefficient are.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|BOTTOM_TEMPERATURE	+	|BOXFLUXES
−	|ambient bottom temperature when a LINEAR water column is admitted	+	|The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|BOTTOM_VELU
−	|ambient bottom velocity U when a LINEAR water column is admitted
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|BOTTOM_VELV	+	|BRCORIOLIS
−	|ambient bottom velocity V when a LINEAR water column is admitted	+	|Checks if the user wants to relax the coriolis force
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|DEFAULT_SALINITY	+	|BRFORCE
−	|ambient salinity when a UNIFORM water column is admitted	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|DEFAULT_TEMPERATURE	+	|BRROX
−	|ambient temperature when a UNIFORM water column is admitted	+	|Checks if the user wants to relax the baroclinic force
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|DEFAULT_VELU	+	|BRTRANSPORT
−	|ambient velocity U when a UNIFORM water column is admitted	+	|Checks if the user wants to relax the horizontal momentum transport
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|DEFAULT_VELV	+	|BRVELOCITY
−	|ambient velocity V when a UNIFORM water column is admitted	+	|Checks if the user wants to relax the horizontal velocity
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|DT_OUTPUT	+	|BRWATERLEVEL
−	|Time interval between outputs	+	|Checks if the user wants to relax the water level
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|INITIAL_TRACER_CONCENTRATION	+	|CELERITY_TYPE
−	|Initial concentration of generic tracer	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|LAGRANGIAN	+	|CENTRIFUGAL
		+	|Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
		+	|
		+	|
	|		|
	|		|
Line 9,946:		Line 9,822:
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	| rowspan="3" |LOCAL_TYPE	+	|CONSERVATIVE_HOR_DIF
−	| rowspan="3" |Methodology to define the ambient variables	+	|Check if the user wants to compute the horizontal diffusion in a conservative way.
−	|FIELD3D	+	|
−	|3D field generated by the MOHID system
−	|-
−	| Water
−	|Jet
−	|LINEAR
−	|Water column where the density and velocity have a linear profile
−	|-
−	| Water
−	|Jet
−	|UNIFORM
−	|Uniform water column
−	|-
−	| Water
−	|Jet
−	|MAX_DT
−	|Maximum time step interval
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|MAX_DV
−	|Maximum volume variation between time steps
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|MAX_PLUME_DIAMETER	+	|CONTINUOUS
−	|Plume diameter from which initial dilution stops. This value is used to simulate the jets overlapping	+	|Checks if the user pretends to continue a old run
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|OUTFALL_ANGLE
−	|Outfall angle
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|OUTFALL_LENGTH	+	|CORIOLIS
−	|Outfall length	+	|Checks  if the user pretends to compute the coriolis force effect
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|OUTPUT_TYPE
−	|The output can be made given the exact information in specific output times or a cloud of particles for each output time
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	| rowspan="2" |PARAMETERIZATION	+	|CORRECT_WATERLEVEL
−	| rowspan="2" |Parametrization used to simulate the entrainment process	+	|check if the user wants to corrected the water level when it is lower than a reference water level
−	|CORJET	+	|
−	|Parameterization based on CORJET model
−	|-
−	| Water
−	|Jet
−	|JETLAG
−	|Parameterization based on JETLAG model
−	|-
−	| Water
−	|Jet
−	|PARTICLES_NUMBER
−	|In case of OUTPUT_TYPE = CLOUD this is the number of output tracer per output time interval
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|PORT_ANGLE_HZ
−	|Port vertical angle
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|PORT_ANGLE_XY	+	|CYCLIC_BOUNDARY
−	|Port horizontal angle	+	|Check if the user wants to impose a CYCLIC boundary condition
		+	|
		+	|
	|		|
	|		|
		+	|Boolean
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Hydrodynamic
		+	| rowspan="3" |CYCLIC_DIRECTION
		+	| rowspan="3" |Check along which direction the user wants to impose a CYCLIC boundary condition
		+	|DirectionX_
		+	|Direction x
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|DirectionY_
		+	|Direction Y
		+	|-
		+	|DirectionXY_
		+	|Directions X and Y
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|PORT_BOTTOM_DISTANCE	+	|DATA_ASSIMILATION
−	|Port distance from the bottom	+	|Checks if the user want to impose a flow relaxation boundary condition. By default do not use flow relaxation boundary condition
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|PORT_DIAMETER
−	|Diameter of each port
	|		|
	|		|
		+	|Boolean
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|PORTS_NUMBER	+	|DEADZONE
−	|Number of Ports	+	|Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|RUN_MAX_PERIOD
−	|Maximum run period
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|RUN_MIN_PERIOD	+	|DEADZONE_FILE
−	|Minimum run period	+	|Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|SEDIMENT_COLUMN
	|		|
	|		|
Line 10,080:		Line 9,918:
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|SURFACE_SALINITY	+	|DECAY_IN
−	|ambient surface salinity when a LINEAR water column is admitted
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|SURFACE_TEMPERATURE
−	|ambient surface temperature when a LINEAR water column is admitted
	|		|
	|		|
−	|-
−	| Water
−	|Jet
−	|SURFACE_VELU
−	|ambient surface velocity U when a LINEAR water column is admitted
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Jet	+	|Hydrodynamic
−	|SURFACE_VELV	+	|DECAY_OUT
−	|ambient surface velocity V when a LINEAR water column is admitted
−	|
−	|
−	|-
−	| Water
−	|Jet
−	|WAVES
	|		|
	|		|
Line 10,116:		Line 9,936:
	|		|
	|		|
−	|
−	|
−	|
−	|}
−
−	=== Module Lagrangian===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleLagrangian.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| rowspan="2" |Water
−	! scope="col" |Module	+	| rowspan="2" |Hydrodynamic
−	! scope="col" |Keyword	+	| rowspan="2" |DISCRETIZATION
−	! scope="col" |Keyword description	+	| rowspan="2" |Check what type of implicit discretization in time is choose for the global equations
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	| Water
−	|Lagrangian
−	| rowspan="2" |ACCIDENT_METHOD
−	| rowspan="2" |How to distribute initially the particles if the emission type is accident
	|1		|1
−	|The "Fay" option	+	|Abbott Scheme - 4 equations per iteration
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
	|-		|-
−	| Water
−	|Lagrangian
	|2		|2
−	|The "Thickness" option	+	|Leendertse Scheme - 6 equations per iteration
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|ACCIDENT_TIME	+	|DT_OUTPUT_TIME
−	|Time when the accident occur.
−	By default is equal to the model start time
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|ADVECTION
−	|Move Particle due to horizontal velocity.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|AMBIENT_CONC
−	|Ambient concentration.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|ASSOCIATE_BEACH_PROB	+	|ENERGY
−	|Checks if the user want to associate beaching probability to the particles	+	|Check if the user want to compute the potential and kinetic energy of the entire domain
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|BEACHING
	|		|
	|		|
Line 10,184:		Line 9,971:
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|BEACHING_BOX_FILENAME	+	|ENERGY_DT
−	|Link to the data file which contains the definition of the boxes used for defining the beaching probability.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|BEACHING_LIMIT
−	|Maximum distance between particles and coast for particle beaching
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|BOTTOM_DISTANCE
−	|Distance from bottom below which the tracer can sediment.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|BOTTOM_EMISSION	+	|ENERGY_WINDOW
−	|Checks if the tracers are emited from the bottom.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|BOX_NUMBER
−	|Number of box to associate to origin.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|BOXES_BEACHING_PROB
−	|List of Inbox Beaching Probability.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|BOXVOLINIC	+	|ENTERING_WAVE
−	|Initial Volume of a particle in the box.	+	|Checks if the wave imposed in the boundary is entering in the domain or leaving it
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|COEF_INITIAL_MIXING
−	|Coefficient use to control volume increase due to initial mixing
	|		|
	|		|
		+	|-
		+	| rowspan="5" |Water
		+	| rowspan="5" |Hydrodynamic
		+	| rowspan="5" |EVOLUTION
		+	| rowspan="5" |Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
		+	|No_hydrodynamic
		+	|No hydrodynamic
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	|-
		+	|Read_File
		+	|Read File
		+	|-
		+	|Residual_hydrodynamic
		+	|Residual hydrodynamic
		+	|-
		+	|Solve_Equations
		+	|Solve equations
		+	|-
		+	|Vertical1D
		+	|1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|COMPUTE_AGE	+	|HMIN_ADVECTION
−	|This logical option allows to compute the age of each tracer.	+	|The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|COMPUTE_BUOYANCY
−	|Computes Particle vertical velocity evolution due to density gradients
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|COMPUTE_PLUME	+	|HMIN_CHEZY
−	|Computes Particle Plume due density gradients	+	|Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|CONC_COLUMN	+	|HMIN_CONVECTION
−	|Column of the time serie input where is defined a variable concentration.	+	|
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|CONC_VARIABLE
−	|Check if the user wants a variable concentration.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|CONCENTRATION	+	|HORIZONTALADVECTION
−	|Concentration of the property.	+	|Checks  if the user pretends to compute the horizontal advection effect
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|D50
	|		|
	|		|
Line 10,289:		Line 10,063:
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|DEFAULT_BEACHING_PROB	+	|HORIZONTALCONVECTION
−	|The probability a particle "beaches" when beaching is enabled
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	| rowspan="3" |DENSITY_METHOD
−	| rowspan="3" |Formula to calculate particle density
−	|1
−	|Leendertse
−	|-
−	| Water
−	|Lagrangian
−	|2
−	|UNESCO
−	|-
−	| Water
−	|Lagrangian
−	|3
−	|Constant
−	|-
−	| Water
−	|Lagrangian
−	|DEPOSITION
−	|Checks if the tracers can deposited.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|DEPTH_CELLS
−	|Depth in Cells (from bottom)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|DEPTH_METERS	+	|HORIZONTALDIFFUSION
−	|Depth of emission relativ to surface.	+	|Checks  if the user pretends to compute the horizontal diffusion effect
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|DISCHARGE_FILE
−	|A Link to the data file whichs contains the time serie of the variable flow
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|DT_EMIT	+	|IMPLICIT_HORADVECTION
−	|The interval between emissions. By default this value is equal to DT_PARTIC	+	|Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|DT_PARTIC	+	|IMPLICIT_HORCONVECTION
−	|Particle Time Step	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="3" |Water
−	|Lagrangian	+	| rowspan="3" |Hydrodynamic
−	| rowspan="3" |EMISSION_SPATIAL	+	| rowspan="3" |IMPLICIT_VERTADVECTION
−	| rowspan="3" |Type of spatial emission.	+	| rowspan="3" |Check if the vertical advection is implicit
−	|Accident	+	|0.0
−	|Emission as accident	+	|Explicit
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
	|-		|-
−	| Water	+	|0.5
−	|Lagrangian	+	|Hybrid for option in (0.0, 1.0)
−	|Box
−	|Emission from a Box
	|-		|-
−	| Water	+	|1.0
−	|Lagrangian	+	|Implicit
−	|Point
−	|Emission at a single point
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	| rowspan="2" |EMISSION_TEMPORAL	+	|IMPLICIT_VERTCONVECTION
−	| rowspan="2" |Type of temporal emission
−	|Continuous
−	|Continuous emission
−	|-
−	| Water
−	|Lagrangian
−	|Instantaneous
−	|Instantaneous emission
−	|-
−	| Water
−	|Lagrangian
−	|EROSION_RATE
−	|Rate of tracers erosion.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|EULERIAN_MONITOR
−	|Path to a boxes file to integrate eulerian  concentrations based on lagrangian tracers
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|EXTINCTION_PARAMETER
−	|This property has an extinction parameter. This parameter can be use
−	to compute the effect of this property in the light extinction
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="3" |Water
−	|Lagrangian	+	| rowspan="3" |Hydrodynamic
−	|FLOAT	+	| rowspan="3" |IMPLICIT_VERTDIFFUSION
−	|Indicates if the particle is a floating particle (e.g. oil)	+	| rowspan="3" |Check if the vertical advection is implicit
		+	|0.0
		+	|Explicit
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|0.5
		+	|Hybrid for option in (0.0, 1.0)
		+	|-
		+	|1.0
		+	|Implicit
		+	|-
		+	| Water
		+	|Hydrodynamic
		+	|INERTIAL_PERIODS
		+	|The period after which the total effect of the baroclinic force is compute
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|FLOW
−	|The flow of the point emission
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|FLOW_COLUMN	+	|INITIAL_ELEVATION
−	|The data column of the flow values which define the time serie of the variable flow	+	|Checks if the user wants to impose a initial elevation
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|FLOW_VARIABLE
−	|Checks if the flow of the point emission is variable DT
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|GROUP_ID	+	|INITIAL_ELEVATION_VALUE
−	|The Group ID to which the origin belongs	+	|The user define with this keyword the initial elevation value
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|INCRP
−	|Increment of grid cells to fill Boxes.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|JET_DATA_FILE	+	|INITIAL_VEL_U
−	|Link to the data file which contains the Plume / Jet parameterizations	+	|Checks  if the user pretends to impose a initial U (X) velocity
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|JET_DT
−	|Time interval for the actualization of Plume Jet properties
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|KILL_LAND_PARTICLES	+	|INITIAL_VEL_V
−	|Kills particles which are located in a Waterpoint which is not a OpenPoint	+	|Checks  if the user pretends to impose a initial V (Y) velocity
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|MAINTAIN_RELATIVE_POSITION
−	|Check is the user wants to maintain
−	the vertical relative position of the origin
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|MIN_CONCENTRATION	+	|INVERTED_BAROMETER_COEF
		+	|The user can change the inverted barometer solution using this calibration coefficient
		+	|1
		+	|Imposed water level using the inverted barometer simplified solution
	|		|
	|		|
Line 10,484:		Line 10,205:
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|MIN_SED_VELOCITY	+	|INVERTED_BAROMETER_REF_ATM_PRESSURE
−	|Minimum Sedimention velocity.	+	|The user can also change the reference atmospheric pressure of the inverted barometer solution via this keyword
		+	|101325
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|MONITOR_BOX
−	|Link to the data file which contains the definition of the boxes used for particle "monitoring" (Residence Time)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|MONITOR_BOX_PROP_MASS	+	|INTERNAL_CELERITY
−	|Name of property to monitor mass in a box
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	| rowspan="2" |MOVEMENT
−	| rowspan="2" |Type of particle aleatory horizontal movement
−	|NotRandom
−	|Do not consider any aleatory horizontal component
−	|-
−	| Water
−	|Lagrangian
−	|SullivanAllen
−	|Parameterization based on Sullivan Allen formulation
−	|-
−	| Water
−	|Lagrangian
−	|MOVING_ORIGIN
−	|Checks if the Origin has a moving location
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|MOVING_ORIGIN_COLUMN_X
−	|The data column in which the X position values are given
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|MOVING_ORIGIN_COLUMN_Y	+	|LOCAL_DENSITY
−	|The data column in which the Y position values are given	+	|Check if the user want to divide the baroclinic pressure by the local density to compute. if this option is false is used the reference density
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|MOVING_ORIGIN_FILE
−	|A Link to the data file which contains the time serie of the position of the origin
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="7" |Water
−	|Lagrangian	+	| rowspan="7" |Hydrodynamic
−	| rowspan="2" |MOVING_ORIGIN_UNITS	+	| rowspan="7" |LOCAL_SOLUTION
−	| rowspan="2" |Units in which the moving origin position is given	+	| rowspan="7" |Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
−	|Meters	+	|1
−	|The units are meters	+	|No local solution
		+	| rowspan="7" |
		+	| rowspan="7" |
		+	| rowspan="7" |
		+	|-
		+	|2
		+	|Submodel
	|-		|-
−	| Water	+	|3
−	|Lagrangian	+	|AssimilationField
−	|Cells	+	|-
−	|The units are given as cells	+	|4
		+	|Gauge
		+	|-
		+	|5
		+	|AssimilaPlusSubModel
		+	|-
		+	|6
		+	|GaugePlusSubModel
		+	|-
		+	|7
		+	|AssimilaGaugeSubModel
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|NAME	+	|MIN_COMPONENT
−	|Name of the property.	+	|The minimum component of the radiative wave below which the radiation process is canceled
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|NBR_PARTIC	+	|MIN_VELOCITY
−	|Number of Particles in each emission.	+	|The minimum velocity in the open boundary below which the radiation is canceled
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|NOWQM	+	|MIN_WATERLEVEL
−	|To compute age without running moduleWQM.	+	|reference level below which the water level is corrected.
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|OLD
−	|If the computation of this origin is continued from a previous run
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|ORIGIN_NAME	+	|MINVEL_BAROCLINIC
−	|Name of the Origin. Origin Names must be unic.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	| rowspan="2" |OUTPUT_CONC
−	| rowspan="2" |Output Integration Type
−	|1
−	|Uses maximum values for integration
−	|-
−	| Water
−	|Lagrangian
−	|2
−	|Uses average values for integration
−	|-
−	| Water
−	|Lagrangian
−	|OUTPUT_MAX_TRACER
−	|Checks if the users wants to output the maximum tracer concentration in each cell
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|OUTPUT_TIME
−	|Output Time
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|OVERLAY_VELOCITY	+	|MISSING_NULL
−	|Checks if the user wants to add an aditional velocity to the particles	+	|Check if the user wants to replace the missing values by zero
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|PARTIC_BOX
−	|Link to the data file which contains the definition of the boxes used for particle emission
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|PARTITION_COEF_SED	+	|MOMENTUM_DISCHARGE
−	|Partition coefficent in the sediment.	+	|Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|PARTITION_COEF_WATER
−	|Partition coefficient in the water column.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|PARTITION_COUPLE_SED	+	|NH_ALPHA_LU
−	|Concentration of the dissolved phase in the intersticial water. The dissolved phase is admitted with a constant concentration.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|PARTITION_COUPLE_WATER
−	|Concentration of the dissolved phase. The dissolved phase is admitted with a constant
−	concentration
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|PARTITION_RATE_SED
−	|Rate of transfer between the two phases.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|PARTITION_RATE_WATER	+	|NH_IMPLICIT_COEF_W
−	|Rate of transfer between the two phases.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|PARTITION_SED
−	|Checks if the tracers has two phases
−	(adsorbe and dissolved) in the sediment
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|PARTITION_WATER
−	|Checks if the tracers has two phases
−	(adsorbe and dissolved) in the water column.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|POINT_VOLUME	+	|NH_MAXIT
−	|Volume of instantanous emission
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|POSITION_CELLS
−	|X and Y Position of the origin in grid cells.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|POSITION_METERS
−	|X and Y Position of the origin in meters.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|RESTART_FILE_OUTPUT_TIME	+	|NH_NORMALIZED_RESIDUAL
−	|Output Time to write restart files	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|RESTART_FILE_OVERWRITE	+	|NH_RESIDUAL
−	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|SED_VELOCITY	+	|NONHYDROSTATIC
−	|Sedimentation Velocity.	+	|Checks if the user want to compute the effect of local vertical acceleration over the pressure field
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	| rowspan="2" |SEDIMENTATION	+	|NORMAL_BAROCLINIC
−	| rowspan="2" |Sedimentation type.
−	|Imposed
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|Stokes
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|SPLIT_PART
−	|Split big particles.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|START_PARTIC_EMIT
−	|The Start Time of the continuous emission. By default is equal to the model start time.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|STATISTICS	+	|NULL_BOUND_HORADV
−	|Wheter to calculate or not the statistic.	+	|Checks if the user wants to assume null horizontal advection in the open boundary
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|STATISTICS_FILE
−	|File name with the statistics definition.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|STATISTICS_LAG	+	|NULL_BOUND_HORCONV
−	|Do a frequency analysis tracer by tracer.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|STOP_PARTIC_EMIT
−	|The Stop Time of the continuous emission. By default is equal to the model end time.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|T90
−	|Coliform Decay rate.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	| rowspan="2" |T90_VAR_METHOD_1	+	|OBSTACLE
−	| rowspan="2" |Method to compute T90 function.	+	|Checks if the user want to parameterize the influence of an
−	|1	+	OBSTACLE in the flow, giving a determined drag coefficient
−	|Fecal decay according to Canteras ''et al.'' (1995)	+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|2	+	|OUTPUT_FACES
−	|Fecal decay according to Chapra (1997)	+	|Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|T90_VARIABLE	+	|OUTPUT_PROFILE
−	|Check if the user wants to compute T90 function of ambient properties: salinity,temperature,light.	+	|Perform profile outputs in HDF5 format
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|TAU_DEP
−	|Critical shear stress of deposition.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|TAU_ERO	+	|OUTPUT_TIME
−	|Critical shear stress of erosion.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|THEORIC_AREA
−	|Uses Theoric Area for Oil Processes.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|THICKNESS_METERS
−	|The initial thickness of the particles. (For floating particle only). (Used to calculate the area if the emission is accident and the total number of particles if the emission is box)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|TIME_DECAY	+	|POTENTIAL_ALGORITHM
−	|Decay time is used to compute a relxation term that makes the critical shear stress of erosion tend to the average tracer erosion rate of the cell where the tracer is deposited.
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|TIME_SERIE
−	|Checks if the user wants to write time series of the particle properties
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|TIME_SERIE_LOCATION
−	|Gets the position of the water points in the Map Module.
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="4" |Water
−	|Lagrangian	+	| rowspan="4" |Hydrodynamic
−	| rowspan="2" |TURB_V	+	| rowspan="4" |RADIATION
−	| rowspan="2" |Vertical turbulence parameterization	+	| rowspan="4" |Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
−	|Constant	+	|0
−	|Constant Parameterization	+	|No Radiation
		+	| rowspan="4" |
		+	| rowspan="4" |
		+	| rowspan="4" |
		+	|-
		+	|1
		+	|FlatherWindWave_
		+	|-
		+	|2
		+	|FlatherLocalSolution_
	|-		|-
−	| Water	+	|3
−	|Lagrangian	+	|BlumbergKantha_
−	|Profile
−	|Parameterization based on the velocity profile
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|TVOL200	+	|RAMP
−	|Time needed for a particle to double volume.	+	|Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
−	Turns particles volume variation on.	+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|UNITS	+	|RAMP_START
−	|Units of the property.	+	|This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|VARVELH	+	|RECORDING
−	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH	+	|Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|VARVELHX	+	|REF_BOUND_WATERLEVEL
−	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity  UStandardDeviation = VarVelHX * Vel + VarVelH
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|VARVELV
−	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|VARVELVX
−	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|VISCCINREF	+	|RELAX_REF_VEL
		+	|
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|Lagrangian
−	|VOLFAC
−	|Factor which indicates when a particle with variable volume is to be deleted (Volume > Initial Volume * VOLFAC)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	| rowspan="2" |VOLUME_INCREASE	+	|RESIDUAL
−	| rowspan="2" |How volume increase is calculated	+	|Check if the user want to compute the residual flow
−	|Double	+	|
−	|The doublication occur after the time given by TVOL200	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|Velocity	+	|RESTART_FILE_OUTPUT_TIME
−	|The doublication occur after the time given by TVOL200, but also depends on the local velocity	+	|Output Time to write restart files
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|WINDCOEF	+	|RESTART_FILE_OVERWRITE
−	|Wind transfer Coefficient	+	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|WINDXY	+	|SLIPPING_CONDITION
−	|If this keyword is defined than the wind velocity defined in the atmosphere module is override and the wind use by the tracers is this one	+	|Checks if the user want to consider the slipping condition for horizontal diffusion
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Lagrangian	+	|Hydrodynamic
−	|WQM_DATA_FILE	+	|SLOWSTART
−	|Location of the File defining the Water Quality configuration.	+	|Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplied by a coefficient that has linear evolution between 0 and 1.
		+	By default this period is zero seconds
	|		|
	|		|
Line 10,965:		Line 10,582:
	|		|
	|		|
−	|}
−
−	=== Module Model===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleModel.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Water
−	! scope="col" |Module	+	|Hydrodynamic
−	! scope="col" |Keyword	+	|STATISTICS
−	! scope="col" |Keyword description	+	|Checks out if the user pretends the statistics of the hydrodynamic properties
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
−	|Water
−	|Model
−	|OPENMP_NUM_THREADS
−	|Sets the number of threads to use with openmp.
	|		|
	|		|
Line 10,991:		Line 10,593:
	|		|
	|-		|-
−	|Land	+	| Water
−	|Model	+	|Hydrodynamic
−	|SYNC_DT	+	|STATISTICS_FILE
−	|Provide results at the exacts time	+	|The statistics definition file of the hydrodynamic properties
−	|0/1	+	|
−	|Inactive/Active	+	|
−	|0	+	|
		+	|
	|		|
−	|Boolean
−	|}
−
−	=== Module Oil===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleOil.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| Water
−	! scope="col" |Module	+	|Hydrodynamic
−	! scope="col" |Keyword	+	|SUBMODEL
−	! scope="col" |Keyword description	+	|Check if the user wants to run this model as a submodel
−	! scope="col" |Options	+	|
−	! scope="col" |Option description	+	|
−	! scope="col" |Default Value	+	|
−	! scope="col" |Units	+	|
−	! scope="col" |Type	+	|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|API	+	|SURFACEWATERFLUX
−	|American Petroleum Institute (API) Gravity	+	|Checks if the user want to consider the effect of precipitation and evaporation
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|ASPHALTENECONTENT	+	|TIDE
−	|Asphaltene Content	+	|Checks if the user pretends to impose a wave tide in the open boundary
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|CEMULS	+	|TIDEPOTENTIAL
−	|Emulsification Constant ((% of evaporated oil before emulsification brgins)	+	|Checks if the user want to consider the effect of the potential tide
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|CPDISTEXP	+	|TIME_SERIE
−	|Cumulative Volume Fraction of Oil Distilled	+	|Checks out if the user pretends to write a time serie
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	| rowspan="2" |DISPERSIONMETHOD	+	|TIME_SERIE_LOCATION
−	| rowspan="2" |Method for Dispersion	+	|
−	|Delvigne	+	|
−	|Dispersion parameterized with Delvigne formulation	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|Mackay	+	|TLAG_FILE
−	|Dispersion parameterized with Mackay formulation	+	|The name file where are the relaxation times defined for the radiation boundary condition
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|DT_OIL_INTPROCESSES	+	|TVD_METHOD_H
−	|Time Step used in computation of oil internal processes	+	|
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|EFFICIENCY
−	|% of Area sprayed effectively dispersed
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	| rowspan="2" |EMULSIFICATIONMETHOD	+	|TVD_METHOD_V
−	| rowspan="2" |Method for Emulsification
−	|Mackay
−	|Emulsification parameterized following Mackay formulation
−	|-
−	| Water
−	|Oil
−	|Rasmussen
−	|Emulsification parameterized following Rasmussen formulation
−	|-
−	| Water
−	|Oil
−	|EmulsParameter
−	|Water Uptake Parameter
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|END_CHEM_DISPERSION
−	|Ending Time of Dispersant Application
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|END_MEC_CLEANUP
−	|Ending Time of Mechanical Cleanup Operation
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="3" |Water
−	|Oil	+	| rowspan="3" |Hydrodynamic
−	| rowspan="3" |EVAPORATIONMETHOD	+	| rowspan="3" |UP_CENTER
−	| rowspan="3" |Method for Evaporation	+	| rowspan="3" |Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme
−	|EvaporativeExposure	+	|0.0
−	|Evaporation computed with evaporative exposure method	+	|Centred differences
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
	|-		|-
−	| Water	+	|0.5
−	|Oil	+	|Hybrid for option in (0,1)
−	|Fingas	+	|-
−	|Evaporation computed with Fingas formulations	+	|1.0
		+	|Upstream
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Hydrodynamic
		+	| rowspan="2" |VELNORMALBOUNDARY
		+	| rowspan="2" |Checks the velocities the user want to impose in the exterior faces
		+	|1
		+	|null value
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|null gradient
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Hydrodynamic
		+	| rowspan="2" |VELTANGENTIALBOUNDARY
		+	| rowspan="2" |Checks the velocities the user want to impose between two boundary points
		+	|1
		+	|null value
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|null gradient
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Hydrodynamic
		+	| rowspan="3" |VERTICAL_AXISYMMETRIC
		+	| rowspan="3" |Checks if the user wants to simulate implicit the sea level evolution. This option only works if the flow has only one horizontal dimension.
		+	|0
		+	|ADI
		+	| rowspan="3" |0
		+	| rowspan="3" |
		+	| rowspan="3" |INTEGER
		+	|-
		+	|1
		+	|X always implicit
	|-		|-
−	| Water	+	|2
−	|Oil	+	|Y always implicit
−	|PseudoComponents
−	|Evaporation computed with pseudocomponents method
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|FINGAS_EVAP_CONST1	+	|VERTICALADVECTION
−	|Fingas Empirical Constant 1 (Necessary If Fingas_Evap_Emp_Data = 1)	+	|Checks  if the user pretends to compute the vertical advection effect
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|FINGAS_EVAP_CONST2	+	|VERTICALCONVECTION
−	|Fingas Empirical Constant 2 (Necessary If Fingas_Evap_Emp_Data = 1)	+	|
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|FINGAS_EVAP_EMP_DATA	+	|VERTICALDIFFUSION
−	|Knowledge of Empirical Data for Evaporation	+	|Checks  if the user pretends to compute the vertical diffusion effect
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	| rowspan="2" |FINGAS_EVAP_EQTYPE	+	|VMIN_CHEZY
−	| rowspan="2" |Evaporation Equation Type	+	|Checks the minimum velocity (Vmin_Chezy) below which the chezy coefficient is constant if the water column is smaller than Hmin_Chezy. By default Vmin_Chezy is equal to 0.10 m/s
−	|Logarithmic	+	|
−	|Logarithmic Equation Type for Evaporation
−	|-
−	| Water
−	|Oil
−	|SquareRoot
−	|Square Root Equation Type for Evaporation
−	|-
−	| Water
−	|Oil
−	|MAXVWATERCONTENT
−	|Maximum Volume Water Content
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|NBRDISTCUTS
−	|Number of Distillation Cuts
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|OIL_CHEM_DISPERSION	+	|VOLUME_RELATION_MAX
−	|Computes Chemical Dispersants Application
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|OIL_DISPERSION
−	|Computes Oil Dispersion Process
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|OIL_DISSOLUTION
−	|Computes Oil Dissolution Process
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|OIL_EMULSIFICATION	+	|VOLUMEVARIATION
−	|Computes oil emulsification process	+	|Checks  if the user pretends to compute the volume variation effect
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|OIL_EVAPORATION
−	|Computes Oil Evaporation Process
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|OIL_MEC_CLEANUP	+	|WATER_DISCHARGES
−	|Computes Mechanical Cleanup Operation	+	|Check if the user want to water discharges
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|OIL_SEDIMENTATION
−	|Computes Oil Sedimentation Process
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|OIL_SPREADING	+	|WATERCOLUMN2D
−	|Computes Oil Spreading Process	+	|water column thickness below which the 3D processes are disconnected
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|OIL_TIMESERIE
−	|Name of the Output results file
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	| rowspan="2" |OILTYPE	+	|WATERLEVEL_MAX_MIN
−	| rowspan="2" |Oil Type	+	|Computes the spatial maps of the maximum and of the minimum water elevation.
−	|Crude	+	|
−	|Crude Oil
−	|-
−	| Water
−	|Oil
−	|Refined
−	|Refined oil
−	|-
−	| Water
−	|Oil
−	|OWINTERFACIALTENSION
−	|Oil-Water Interfacial Tension
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|P_AREA_SPRAYED
−	|% of Spill Area sprayed whit dispersant
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|PERC_MASSDIST180	+	|WAVE_DIRECTION
−	|%(Wheight) of Oil Evaporated until 180ºC (Necessary If Fingas_Evap_Emp_Data = 0)	+	|The user with this keyword give a direction to a wave entering the domain
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|POURPOINT
−	|Pour Point
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|RECOVERY	+	|WAVE_STRESS
−	|rate or volume of Emulsion Recovered	+	|Checks if the user want to consider the effect of the waves stress. By default the waves stress is not compute
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|RECOVERY_DATAFORM
−	|DataForm of emulsion recovered
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="3" |Water
−	|Oil	+	| rowspan="3" |Hydrodynamic
−	| rowspan="2" |SPREADINGMETHOD	+	| rowspan="3" |WIND
−	| rowspan="2" |Method for Spreading	+	| rowspan="3" |Checks if the user want to consider the effect of the wind stress. By default the wind stress is not computed
−	|Fay	+	|0
−	|Mechanical spreading simply based on Fay theory	+	|No wind forcing
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|1
		+	|wind forcing
	|-		|-
−	| Water	+	|2
−	|Oil	+	|wind forcing with a smooth start
−	|ThicknessGradient
−	|Oil mechanical spreading based on thickness gradients, parameterised with fay theory
	|-		|-
	| Water		| Water
−	|Oil	+	|Hydrodynamic
−	|START_CHEM_DISPERSION	+	|WIND_SMOOTH_PERIOD
−	|Starting Time of Dispersant Application	+	|The user specify the wind smooth period
	|		|
	|		|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module HydrodynamicFile===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamicFile.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |HydrodynamicFile
		+	| rowspan="2" |BAT_INTEGRATION_TYPE
		+	| rowspan="2" |It is possible to calculate the new bathymetry (spacial integration) using two different options
		+	|MaxVal_Type
		+	|Each new integrated cell has the maximum value of the cells used to do the integration of that cell
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|MeanVal_Type
		+	|The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.
	|-		|-
	| Water		| Water
−	|Oil	+	|HydrodynamicFile
−	|START_MEC_CLEANUP	+	|DT_HYDROFILE
−	|Starting Time of Mechanical Cleanup Operation	+	|Time Step of the hydrodynamic file
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|TDISTEXP
−	|Vapour Temperature of Distillate
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|HydrodynamicFile
−	|TEMPVISCREF	+	|IN_FIELD
−	|Temperature of Reference Viscosity	+	|Input File Name
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|USERCOEFVELMANCHA
−	|Empirical Thickness Gradient's Spreading Velocity Coefficient
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|HydrodynamicFile
−	|VISCCINREF	+	| rowspan="2" |IN_FILE_TYPE
−	|Reference Cinematic Viscosity	+	| rowspan="2" |Input File Type
		+	|BeginEnd_type
	|		|
	|		|
−	|-
−	| Water
−	|Oil
−	|VISCREF
−	|Reference Dynamic Viscosity
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Oil	+	|HydrodynamicFile
−	|WAXCONTENT	+	|M2_Tide_type
−	|Wax Content
	|		|
	|		|
	|		|
	|		|
−	|
−	|}
−
−	=== Module Sand===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSand.F90 Source Code]
−	{| class="wikitable"
	|-		|-
−	! scope="col" |Project	+	| rowspan="2" |Water
−	! scope="col" |Module	+	| rowspan="2" |HydrodynamicFile
−	! scope="col" |Keyword	+	| rowspan="2" |IN_FILE_VERSION
−	! scope="col" |Keyword description	+	| rowspan="2" |Input File Version
−	! scope="col" |Options	+	|1
−	! scope="col" |Option description	+	|Only available if LOAD_TO_MEMORY = 0
−	! scope="col" |Default Value	+	| rowspan="2" |
−	! scope="col" |Units	+	| rowspan="2" |
−	! scope="col" |Type	+	| rowspan="2" |
		+	|-
		+	|2
		+	|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|BATHYM_EVOLUTION	+	|LOAD_TO_MEMORY
−	|it´s a conditional keyword: check if the user wants to let the bathymetry evolve due to sand transport	+	|Load all information to memory
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|BATIM_DT
−	|The time step of the BATIM evolution
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|BOUNDARY	+	|N_ITEGRATION_CELLS
−	|check what type off boundary condition the user wants: 1 -> NullGradient, 2 -> Cyclic	+	|Number of cells that will be integrated (the integration space step)
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|BOX_FILENAME
−	|path to the file where the boxes are defined
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|BOXFLUXES	+	|NEW_BATIM
−	|It´s a conditional keyword to compute fluxes between boxes	+	|Gets the name of the new bathymetry
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|CLASS_ID
−	|??
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|CLASS_NAME	+	|OUT_FIELD
−	|??	+	|Ouput Data File
−		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|CLASSES_NUMBER
−	|The number of sand classes the user wants to define
	|		|
	|		|
	|-		|-
−	| Water	+	| rowspan="2" |Water
−	|Sand	+	| rowspan="2" |HydrodynamicFile
−	|CRITICAL_SLOP	+	| rowspan="2" |OUT_FILE_VERSION
−	|slope above which there is lateral erosion.	+	| rowspan="2" |Controls the version of the output file
		+	|1
	|		|
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|DENS_SAND	+	|SPACE_INTEGRATION
−	|Sand density	+	|Verifies if the integration of fluxes in space is to be done
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|DISCHARGES
−	|??
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|FILTER_RADIUS	+	|TIME_INTEGRATION
		+	|Performs an integration in time,
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|FILTER_SCHEME
−	|the keyword can be equal to NO FILTER or MODIFY LAX.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|HydrodynamicFile
−	|FLUX_SLOP	+	|WINDOW
−	|??	+	|It is possible to define a window inside a bathymetry, where we want to record values to the hydrodynamic file
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|OLD
−	|it´s a conditional keyword: check if the user wants to start from the final condition of a previous run
	|		|
	|		|
		+	|}
		+
		+	=== Module InterfaceSedimentWater===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleInterfaceSedimentWater.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|Sand	+	|InterfaceSedimentWater
−	|OUTPUT_TIME	+	|BEGIN_DIFF_COEF
−	|output time step
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|POROSITY
−	|porosity of the sediments
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|SAND_DT
−	|The time step of the SAND evolution
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|InterfaceSedimentWater
−	|SAND_MIN	+	|BENTHOS
−	|The minimum sand layer thickness	+	|Compute property benthic ecological processes
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|SMOOTH_SLOP
−	|it´s a conditional keyword: check if the user wants to compute transport in strong slopes
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|InterfaceSedimentWater
−	|TAU_MAX	+	|BOX_TIME_SERIE
−	|the maximum bottom shear stress	+	|Outputs property results in box time series
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|TIME_SERIE
−	|it´s a conditional keyword: checks out if the user pretends to write a time serie for the transport fluxes
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|InterfaceSedimentWater
−	|TIME_SERIE_LOCATION	+	|BOXFLUXES
−	|path to the file where the boxes are defined	+	|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Sand
−	|TRANSPORT_FACTOR
−	|it´s a factor to amplify the transport
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Sand	+	|InterfaceSedimentWater
−	|TRANSPORT_METHOD	+	|CEQUALW2
−	|Methodology use to compute the sand transport	+	|Compute property CEQUALW2 benthic ecological processes
	|		|
	|		|
Line 11,548:		Line 11,113:
	|		|
	|		|
−	|}
−
−	=== Module SedimentProperties===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSedimentProperties.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|ADVECTION_DIFFUSION	+	|CONSOLIDATION
−	|Compute property advection-diffusion	+	|Activates consolidation processes as well as erosion from consolidated sediment compartment
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|BIOTURBATION
−	|Compute bioturbation processes
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|BIOTURBATION_COEF	+	|DEPOSITION
−	|Bioturbation diffusion coefficient	+	|Compute property deposition
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|BIOTURBATION_DECAY_COEF
−	|Decay factor to compute decay of bioturbation effect
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|BIOTURBATION_DEPTH	+	|DESCRIPTION
−	|Depth till which bioturbation diffusion is constant (m)	+	|Brief description of the property
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|BOX_TIME_SERIE
−	|Ouputs results in box time series
	|		|
−	|
−	|-
−	| Water
−	|SedimentProperties
−	|BOXFLUXES
−	|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
	|DESCRIPTION		|DESCRIPTION
−	|Brief description of the property	+	|Description of the rate to perform output
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	| rowspan="2" |DIFFUSION_METHOD
−	| rowspan="2" |Method to compute diffusion coefficient correction for the sediments
−	|1
−	|Berner, 1980
−	|-
−	| Water
−	|SedimentProperties
−	|2
−	|Soetaert, 1996
−	|-
−	| Water
−	|SedimentProperties
−	|IS_COEF
−	|Conversion factor to I.S. units
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|MIN_VALUE	+	|DETRITUS
−	|Minimum allowed value of property concentration	+	|Compute property as detritus
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|MOLECULAR_DIFF_COEF
−	|Infinite dilution molecular diffusion coefficient
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|NAME	+	|EROSION
−	|Property name	+	|Compute property erosion
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|OLD
−	|Initialization from previous run (overrides FillMatrix)
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|OUTPUT_HDF	+	|FIRSTPROP
−	|Ouputs results in HDF5 format	+	|Name of the first property involved in the rate
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|OUTPUT_TIME	+	|MASS_LIMITATION
−	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.	+	|Property mass is finite
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|PARTICULATE	+	|MASS_MIN
−	|Property physical state: 0 - Dissolved ; 1 - Particulate	+	|Minimum mass allowed for the property if MASS_LIMITATION is on. Values of zero are allowed.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|PARTITION	+	|NAME
−	|Compute partition between dissolved-particulate phases	+	|Name of the property
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|PARTITION_COUPLE	+	|NAME
−	|Name of the property (oposite phase) to compute partition	+	|Name of the rate to perform output
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|SEDIMENT_QUALITY	+	|OLD
−	|Compute sediment quality processes	+	|Initialization is made based on previous run (overrides FillMatrix keywords)
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|SURFACE_FLUXES
−	|Compute fluxes at the sediment surface
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|TIME_SERIE	+	|OUTPUT_HDF
−	|Output time series for sediment property	+	|Outputs property results in HDF5 format
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|SedimentProperties
−	|TIME_SERIE_LOCATION
−	|Path to time serie locations file
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|SedimentProperties	+	|InterfaceSedimentWater
−	|UNITS	+	|OUTPUT_SHEAR_STRESS
−	|Property units	+	|Output shear stress in HDF format
	|		|
	|		|
Line 11,739:		Line 11,253:
	|		|
	|		|
−	|}
−
−	=== Module Turbine===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbine.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|CD	+	|OUTPUT_TIME
−	|Drag coef for the structure	+	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
	|		|
−	|Not yet implemented
	|		|
	|		|
−	|
−	|-
−	| Water
−	|Turbine
−	|CP
−	|Power coefficient value. Power coefficient that quantifies the amount of power extracted from the flow
−	|0-1
−	|percentage between 0 and 1
	|		|
	|		|
−	|Real
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|CT	+	|PARTICULATE
−	|Thrust coefficient value. Power coefficient that quantifies the forced exerted by the turbine to the flow	+	|Property physical state: 0 - Dissolved; 1 - Particulate
−	|0-1
−	|percentage between 0 and 1
	|		|
	|		|
−	|Real
−	|-
−	| Water
−	|Turbine
−	|DIAMETER
−	|Device diameter length
	|		|
	|		|
	|		|
−	|m
−	|Real
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|HEIGHT	+	|REFERENCE_DEPTH
−	|The heigh of the centre of the turbine respect the floor	+	|Reference depth below which shear stress is limited. Keyword is only read if SHEAR_STRESS_LIMITATION is on.
	|		|
	|		|
	|		|
−	|m
−	|Real
−	|-
−	| Water
−	|Turbine
−	|LOWER_VEL
−	|Cut-in speed. The minimum speed at which the device starts working
	|		|
	|		|
−	|0
−	|m/s
−	|Real
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|POS_LAT	+	|REFERENCE_SHEAR_STRESS
−	|Latitude position in geographic coordinates or y position in metric coordinates.	+	|Shear stress value assumed in limited cells when SHEAR_STRESS_LIMITATION is on
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Real
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|POS_LONG	+	|RESTART_FILE_OUTPUT_TIME
−	|Longitude position in geographic coordinates and x position in metric coordinates.	+	|Output Time to write restart files
		+	|
	|		|
	|		|
	|		|
	|		|
−	|Real
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|TIMESERIE	+	|RESTART_FILE_OVERWRITE
−	|Activates the timeserie module and prints the output data of the turbine	+	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
−	|0/1	+	|
−	|activates the ouput data
	|		|
	|		|
−	|Boolean
−	|-
−	| Water
−	|Turbine
−	|UPPER_VEL
−	|Design speed.
	|		|
	|		|
−	|10
−	|m/s
−	|Real
	|-		|-
	| Water		| Water
−	|Turbine	+	|InterfaceSedimentWater
−	|WIDTH_STRUCT	+	|SAND_TRANSPORT
−	|Width of the structure	+	|Compute sand tranport
		+	|
	|		|
−	|Not yet implemented
	|		|
	|		|
	|		|
−	|-
−	|}
−
−	=== Module Turbulence===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbulence.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|Background_Viscosity	+	|SECONDPROP
−	|Background viscosity/diffusivity.	+	|Name of the second property involved in the rate
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|CONST_MIXING_LENGTH_HORIZONTAL
−	|Default horizontal mixing length. Used to compute the random trajectory of particle (Lagrangian Module
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|CONTINUOUS	+	|SEDIMENT_FLUXES
−	|Check if the user wants to perform a simulation startinf from a previous run (1) or not (0).	+	|Compute property fluxes between interface sediment-water and sediment column
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|DT_OUTPUT_TIME
−	|Time interval for time serie.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|HORCON	+	|SEDIMENT_WATER_FLUXES
−	|Smaagorinsky coefficient. Used only if MODVISH is "smagorinsky".	+	|Compute property fluxes between sediment and water column
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|HREF_VIS	+	|SHEAR_STRESS_LIMITATION
−	|Water column reference thickness used in the for the option MODVISH "estuary".	+	|Limit shear stress values in shallow zones
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|MIXLENGTH_MAX	+	|STATISTICS_SHEAR
−	|Maximum allowed mixing length. Parameter used in the Nihoul and Leendertse parameterization.	+	|Perform statistics to shear velocity
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|MIXLENGTH_V	+	|STATISTICS_SHEAR_FILE
−	|Default vertical mixing length. Used to compute the random trajectory of particle (Lagrangian Module).	+	|Path to statistics input data file. Only read if STATISTICS_SHEAR is on.
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|MLD	+	|TIME_SERIE
−	|Checks out if the user pretends to compute the mixed layer length (1) or not (0).	+	|Outputs property results in time series
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|MLD_BOTTOM	+	|TIME_SERIE_LOCATION
−	|Checks out if the user pretends to compute the bottom mixed layer length (1) or not (0).	+	|Path to time serie locations file
		+	|
		+	|
		+	|
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	| rowspan="3" |MLD_Method	+	|UNITS
−	| rowspan="3" |	+	|Property units
−	|1	+	|
−	|Turbulent kinetic energy (TKE) inferior to a predefined minimum.	+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|2	+	|WATER_FLUXES
−	|Richardson number (Ri) superior to a critical value.	+	|Compute property fluxes to/from water column
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|InterfaceSedimentWater
−	|3	+	|WAVETENSION
−	|Maximum value of Brunt-Vaisalla frequency (N)	+	|Compute wave induced shear stress
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module Jet===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleJet.F90 Source Code]
		+	{| class="wikitable"
	|-		|-
−	| Water	+	! scope="col" |Project
−	|Turbulence	+	! scope="col" |Module
−	| rowspan="7" |MODTURB	+	! scope="col" |Keyword
−	| rowspan="7" |Vertical eddy viscosity model	+	! scope="col" |Keyword description
−	|backhaus	+	! scope="col" |Options
−	|Uses Backhaus turbulence scheme.	+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|constant	+	|BOTTOM_SALINITY
−	|Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing.	+	|ambient bottom salinity when a LINEAR water column is admitted
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|file2D	+	|BOTTOM_TEMPERATURE
−	|Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)	+	|ambient bottom temperature when a LINEAR water column is admitted
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|leendertsee	+	|BOTTOM_VELU
−	|Uses Leendertsee turbulence scheme.	+	|ambient bottom velocity U when a LINEAR water column is admitted
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|nihoul	+	|BOTTOM_VELV
−	|Uses Nihoul turbulence scheme.	+	|ambient bottom velocity V when a LINEAR water column is admitted
		+	|
		+	|
		+	|
		+	|
		+	|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|pacanowski	+	|DEFAULT_SALINITY
−	|Uses Pacanowski turbulence scheme.	+	|ambient salinity when a UNIFORM water column is admitted
−	|-
−	| Water
−	|Turbulence
−	|turbulence_equation
−	|Uses a turbulence equation for closure. This is only to be used with GOTM module.
−	|-
−	| Water
−	|Turbulence
−	| rowspan="4" |MODVISH
−	| rowspan="4" |Horizontal eddy viscosity model.
−	|constant
−	|Constant horizontal viscosity
−	|-
−	| Water
−	|Turbulence
−	|estuary
	|		|
−	|-
−	| Water
−	|Turbulence
−	|file2D
−	|Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
−	|-
−	| Water
−	|Turbulence
−	|smagorinsky
−	|Smagorinsky turbulence scheme.
−	|-
−	| Water
−	|Turbulence
−	|NYQUIST
−	|Nyquist frequency used for mixing length calculation.
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|OUTPUT_PROFILE
−	|Perform profile outputs in HDF5
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|OUTPUT_TIDE	+	|DEFAULT_TEMPERATURE
−	|Checks out if the user pretends to write tidal information in HDF output (1) or not (0).	+	|ambient temperature when a UNIFORM water column is admitted
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|OUTPUT_TIME
−	|Intrevals of time between outputs.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|PRANDTL_0	+	|DEFAULT_VELU
−	|Vertical Prandtl number	+	|ambient velocity U when a UNIFORM water column is admitted
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|RESTART_FILE_OVERWRITE
−	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|RICH_MLD	+	|DEFAULT_VELV
−	|Ri used to compute the surface mixing length based on the Ri number.	+	|ambient velocity V when a UNIFORM water column is admitted
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|STATISTICS_MLD
−	|Checks out if the user pretends to output statics for the surface mixing length (1) or not (0).
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|STATISTICS_MLD_FILE	+	|DT_OUTPUT
−	|File name for output statistics of surface mixing length.	+	|Time interval between outputs
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|TIME_SERIE
−	|Checks out if the user pretends to write time series of this property (1) or not (0).
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|TIME_SERIE_LOCATION	+	|INITIAL_TRACER_CONCENTRATION
−	|Path to time serie location file	+	|Initial concentration of generic tracer
		+	|
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|TKE_MLD
−	|TKE limit used to compute the surface mixing length based on the TKE.
	|		|
	|		|
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|VISCOSITY_H	+	|LAGRANGIAN
−	|Default horizontal viscosity.
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|VISCOSITY_V
−	|Default vertical viscosity.
	|		|
	|		|
−	|-
−	| Water
−	|Turbulence
−	|VISH_REF
−	|Horizontal viscosity used as the minimum value for viscosity if MODVISH is either "estuary" or
−	"smagorinsky".
	|		|
	|		|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Jet
		+	| rowspan="3" |LOCAL_TYPE
		+	| rowspan="3" |Methodology to define the ambient variables
		+	|FIELD3D
		+	|3D field generated by the MOHID system
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|LINEAR
		+	|Water column where the density and velocity have a linear profile
		+	|-
		+	|UNIFORM
		+	|Uniform water column
	|-		|-
	| Water		| Water
−	|Turbulence	+	|Jet
−	|VREF_VIS	+	|MAX_DT
−	|Reference velocity used if MODVISH is "estuary".	+	|Maximum time step interval
	|		|
	|		|
Line 12,143:		Line 11,584:
	|		|
	|		|
−	|}	+	|-
−
−	=== Module WaterProperties===
−	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleWaterProperties.F90 Source Code]
−	{| class="wikitable"
−	|-
−	! scope="col" |Project
−	! scope="col" |Module
−	! scope="col" |Keyword
−	! scope="col" |Keyword description
−	! scope="col" |Options
−	! scope="col" |Option description
−	! scope="col" |Default Value
−	! scope="col" |Units
−	! scope="col" |Type
−	|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|ADV_DIF_NUM_STABILITY	+	|MAX_DV
−	|Verifies advection-diffusion numerical stability for this property.	+	|Maximum volume variation between time steps
	|		|
	|		|
Line 12,170:		Line 11,596:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	| rowspan="5" |ADV_METHOD_H	+	|MAX_PLUME_DIAMETER
−	| rowspan="5" |Horizontal advection discretization.	+	|Plume diameter from which initial dilution stops. This value is used to simulate the jets overlapping
−	|1
−	|UpwindOrder1
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|2
−	|UpwindOrder2
	|		|
	|		|
Line 12,188:		Line 11,606:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|3	+	|OUTFALL_ANGLE
−	|UpwindOrder3	+	|Outfall angle
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|4
−	|P2_TVD
	|		|
	|		|
Line 12,204:		Line 11,616:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|5	+	|OUTFALL_LENGTH
−	|CentralDif	+	|Outfall length
−	|
	|		|
	|		|
−	|-
−	| Water
−	|WaterProperties
−	| rowspan="5" |ADV_METHOD_V
−	| rowspan="5" |Vertical advection discretization.
−	|1
−	|UpwindOrder1
	|		|
	|		|
Line 12,222:		Line 11,626:
	|-		|-
	| Water		| Water
−	|WaterProperties.	+	|Jet
−	|2	+	|OUTPUT_TYPE
−	|UpwindOrder2	+	|The output can be made given the exact information in specific output times or a cloud of particles for each output time
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|3
−	|UpwindOrder3
	|		|
	|		|
	|		|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Jet
		+	| rowspan="2" |PARAMETERIZATION
		+	| rowspan="2" |Parametrization used to simulate the entrainment process
		+	|CORJET
		+	|Parameterization based on CORJET model
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|JETLAG
		+	|Parameterization based on JETLAG model
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|4	+	|PARTICLES_NUMBER
−	|P2_TVD	+	|In case of OUTPUT_TYPE = CLOUD this is the number of output tracer per output time interval
		+	|
		+	|
	|		|
	|		|
Line 12,246:		Line 11,659:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|5	+	|PORT_ANGLE_HZ
−	|CentralDif	+	|Port vertical angle
		+	|
		+	|
	|		|
	|		|
Line 12,254:		Line 11,669:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|ADVECTION_DIFFUSION	+	|PORT_ANGLE_XY
−	|Property transported by advection and diffusion.	+	|Port horizontal angle
	|		|
	|		|
Line 12,264:		Line 11,679:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	| rowspan="2" |ADVECTION_H_IMP_EXP	+	|PORT_BOTTOM_DISTANCE
−	| rowspan="2" |Horizontal advection computed using a implicit/explicit discretization for this property.	+	|Port distance from the bottom
−	|0
−	|Implicit discretization
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|1
−	|Explicit discretization
	|		|
	|		|
Line 12,282:		Line 11,689:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	| rowspan="2" |ADVECTION_V_IMP_EXP	+	|PORT_DIAMETER
−	| rowspan="2" |Vertical advection computed using a implicit/explicit discretization for this property.	+	|Diameter of each port
−	|0
−	|Implicit discretization.
−	|
	|		|
	|		|
−	|-
−	| Water
−	|WaterProperties
−	|1
−	|Explicit discretization.
	|		|
	|		|
Line 12,300:		Line 11,699:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|AGE_USING_WATERPOINTS	+	|PORTS_NUMBER
−	|Compute age using Waterpoints. If FALSE then age is computed using Openpoints.	+	|Number of Ports
	|		|
	|		|
Line 12,310:		Line 11,709:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|ALTITUDE	+	|RUN_MAX_PERIOD
−	|	+	|Maximum run period
	|		|
	|		|
Line 12,320:		Line 11,719:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|BOTTOM_FLUXES	+	|RUN_MIN_PERIOD
−	|This property has bottom fluxes	+	|Minimum run period
	|		|
	|		|
Line 12,330:		Line 11,729:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	| rowspan="7" |BOUNDARY_CONDITION	+	|SEDIMENT_COLUMN
−	| rowspan="7" |Boundary condition for this property.
−	|1
−	|MassConservation
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|WaterProperties
−	|2
−	|ImposedValue
	|		|
	|		|
Line 12,348:		Line 11,739:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|3	+	|SURFACE_SALINITY
−	|VerticalDiffusion	+	|ambient surface salinity when a LINEAR water column is admitted
		+	|
		+	|
	|		|
	|		|
Line 12,356:		Line 11,749:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|4	+	|SURFACE_TEMPERATURE
−	|NullGradient	+	|ambient surface temperature when a LINEAR water column is admitted
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|5
−	|SubModel
	|		|
	|		|
Line 12,372:		Line 11,759:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|6	+	|SURFACE_VELU
−	|Orlanski	+	|ambient surface velocity U when a LINEAR water column is admitted
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|8
−	|CyclicBoundary
	|		|
	|		|
Line 12,388:		Line 11,769:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	| rowspan="2" |BOUNDARY_INITIALIZATION	+	|SURFACE_VELV
−	| rowspan="2" |Processes considered to initialize the boundary values of this property	+	|ambient surface velocity V when a LINEAR water column is admitted
−	|EXTERIOR
−	|A value exterior to the domain is be imposed (a constant value).
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|INTERIOR
−	|Boundaries equal to the values given
−	in the same cells during the domain initialization.
	|		|
	|		|
Line 12,407:		Line 11,779:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Jet
−	|BOX_TIME_SERIE	+	|WAVES
−	|Checks to see if the user pretends to write a time serie inside each box for this property
	|		|
	|		|
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|BOXFLUXES
−	|Path to the file with the boxes definitions.
	|		|
	|		|
Line 12,425:		Line 11,790:
	|		|
	|		|
		+	|}
		+
		+	=== Module Lagrangian===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleLagrangian.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |ACCIDENT_METHOD
		+	| rowspan="2" |How to distribute initially the particles if the emission type is accident
		+	|1
		+	|The "Fay" option
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|The "Thickness" option
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|CEQUALW2	+	|ACCIDENT_TIME
−	|This property has CEQUALW2 model as a sink and source	+	|Time when the accident occur.
		+	By default is equal to the model start time
	|		|
	|		|
Line 12,437:		Line 11,831:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DATA_ASSIMILATION	+	|ADVECTION
−	|Data assimilation scheme	+	|Move Particle due to horizontal velocity.
	|		|
	|		|
Line 12,447:		Line 11,841:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DECAY_TIME	+	|AMBIENT_CONC
−	|Decay time of this property in the boundary.	+	|Ambient concentration.
−	|0	+	|
−	|Property value at the boundary remains constant.	+	|
	|		|
	|		|
Line 12,457:		Line 11,851:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DEFAULTBOUNDARY	+	|ASSOCIATE_BEACH_PROB
−	|The default value of a specific water property imposed in the open boundary	+	|Checks if the user want to associate beaching probability to the particles
	|		|
	|		|
Line 12,467:		Line 11,861:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	| rowspan="5" |DENSITY_METHOD	+	|BEACHING
−	| rowspan="5" |Method to compute water density
−	|1
−	|Leendertse
	|		|
	|		|
	|		|
−	|-
−	| Water
−	|WaterProperties
−	|2
−	|UNESCO (''in situ'' temperature)
	|		|
	|		|
Line 12,485:		Line 11,871:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|3	+	|BEACHING_BOX_FILENAME
−	|Linear	+	|Link to the data file which contains the definition of the boxes used for defining the beaching probability.
		+	|
		+	|
	|		|
	|		|
Line 12,493:		Line 11,881:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|4	+	|BEACHING_LIMIT
−	|Mellor 1996	+	|Maximum distance between particles and coast for particle beaching
		+	|
		+	|
	|		|
	|		|
Line 12,501:		Line 11,891:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|5	+	|BOTTOM_DISTANCE
−	|Jackett and McDougall 1995	+	|Distance from bottom below which the tracer can sediment.
		+	|
		+	|
	|		|
	|		|
Line 12,509:		Line 11,901:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DESCRIPTION	+	|BOTTOM_EMISSION
−	|Description of this property	+	|Checks if the tracers are emited from the bottom.
	|		|
	|		|
Line 12,519:		Line 11,911:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DESCRIPTION	+	|BOX_NUMBER
−	|Rate description ex: zooplankton grazing over phytoplankton	+	|Number of box to associate to origin.
	|		|
	|		|
Line 12,529:		Line 11,921:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	| rowspan="2" |DIFFUSION_V_IMP_EXP	+	|BOXES_BEACHING_PROB
−	| rowspan="2" |Vertical diffusion computed using a implicit/explicit discretization for this property.	+	|List of Inbox Beaching Probability.
−	|0	+	|
−	|Implicit discretization.	+	|
	|		|
	|		|
Line 12,539:		Line 11,931:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|1	+	|BOXVOLINIC
−	|Explicit discretization.	+	|Initial Volume of a particle in the box.
		+	|
		+	|
	|		|
	|		|
Line 12,547:		Line 11,941:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DISCHARGES	+	|COEF_INITIAL_MIXING
−	|Property is discharged.	+	|Coefficient use to control volume increase due to initial mixing
	|		|
	|		|
Line 12,557:		Line 11,951:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|DISCHARGES_TRACKING	+	|COMPUTE_AGE
−	|This property writes discharges as time serie	+	|This logical option allows to compute the age of each tracer.
	|		|
	|		|
Line 12,567:		Line 11,961:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	| rowspan="3" |DOSAT_TYPE	+	|COMPUTE_BUOYANCY
−	| rowspan="3" |Method to compute dissolved oxygen saturation	+	|Computes Particle vertical velocity evolution due to density gradients
−	|1
−	|Apha
	|		|
	|		|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|2
−	|Henry
	|		|
	|		|
Line 12,585:		Line 11,971:
	|-		|-
	| Water		| Water
−	|WaterProperties	+	|Lagrangian
−	|3	+	|COMPUTE_PLUME
−	|Mortimer	+	|Computes Particle Plume due density gradients
−	|	+	|
−	|	+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|CONC_COLUMN
		+	|Column of the time serie input where is defined a variable concentration.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|CONC_VARIABLE
		+	|Check if the user wants a variable concentration.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|CONCENTRATION
		+	|Concentration of the property.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|D50
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DEFAULT_BEACHING_PROB
		+	|The probability a particle "beaches" when beaching is enabled
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Lagrangian
		+	| rowspan="3" |DENSITY_METHOD
		+	| rowspan="3" |Formula to calculate particle density
		+	|1
		+	|Leendertse
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|2
		+	|UNESCO
		+	|-
		+	|3
		+	|Constant
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DEPOSITION
		+	|Checks if the tracers can deposited.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DEPTH_CELLS
		+	|Depth in Cells (from bottom)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DEPTH_METERS
		+	|Depth of emission relativ to surface.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DISCHARGE_FILE
		+	|A Link to the data file whichs contains the time serie of the variable flow
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DT_EMIT
		+	|The interval between emissions. By default this value is equal to DT_PARTIC
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|DT_PARTIC
		+	|Particle Time Step
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Lagrangian
		+	| rowspan="3" |EMISSION_SPATIAL
		+	| rowspan="3" |Type of spatial emission.
		+	|Accident
		+	|Emission as accident
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|Box
		+	|Emission from a Box
		+	|-
		+	|Point
		+	|Emission at a single point
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |EMISSION_TEMPORAL
		+	| rowspan="2" |Type of temporal emission
		+	|Continuous
		+	|Continuous emission
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Instantaneous
		+	|Instantaneous emission
		+	|-
		+	| Water
		+	|Lagrangian
		+	|EROSION_RATE
		+	|Rate of tracers erosion.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|EULERIAN_MONITOR
		+	|Path to a boxes file to integrate eulerian  concentrations based on lagrangian tracers
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|EXTINCTION_PARAMETER
		+	|This property has an extinction parameter. This parameter can be use
		+	to compute the effect of this property in the light extinction
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|FLOAT
		+	|Indicates if the particle is a floating particle (e.g. oil)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|FLOW
		+	|The flow of the point emission
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|FLOW_COLUMN
		+	|The data column of the flow values which define the time serie of the variable flow
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|FLOW_VARIABLE
		+	|Checks if the flow of the point emission is variable DT
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|GROUP_ID
		+	|The Group ID to which the origin belongs
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|INCRP
		+	|Increment of grid cells to fill Boxes.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|JET_DATA_FILE
		+	|Link to the data file which contains the Plume / Jet parameterizations
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|JET_DT
		+	|Time interval for the actualization of Plume Jet properties
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|KILL_LAND_PARTICLES
		+	|Kills particles which are located in a Waterpoint which is not a OpenPoint
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MAINTAIN_RELATIVE_POSITION
		+	|Check is the user wants to maintain
		+	the vertical relative position of the origin
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MIN_CONCENTRATION
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MIN_SED_VELOCITY
		+	|Minimum Sedimention velocity.
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MONITOR_BOX
		+	|Link to the data file which contains the definition of the boxes used for particle "monitoring" (Residence Time)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MONITOR_BOX_PROP_MASS
		+	|Name of property to monitor mass in a box
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |MOVEMENT
		+	| rowspan="2" |Type of particle aleatory horizontal movement
		+	|NotRandom
		+	|Do not consider any aleatory horizontal component
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|SullivanAllen
		+	|Parameterization based on Sullivan Allen formulation
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MOVING_ORIGIN
		+	|Checks if the Origin has a moving location
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MOVING_ORIGIN_COLUMN_X
		+	|The data column in which the X position values are given
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MOVING_ORIGIN_COLUMN_Y
		+	|The data column in which the Y position values are given
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|MOVING_ORIGIN_FILE
		+	|A Link to the data file which contains the time serie of the position of the origin
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |MOVING_ORIGIN_UNITS
		+	| rowspan="2" |Units in which the moving origin position is given
		+	|Meters
		+	|The units are meters
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Cells
		+	|The units are given as cells
		+	|-
		+	| Water
		+	|Lagrangian
		+	|NAME
		+	|Name of the property.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|NBR_PARTIC
		+	|Number of Particles in each emission.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|NOWQM
		+	|To compute age without running moduleWQM.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|OLD
		+	|If the computation of this origin is continued from a previous run
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|ORIGIN_NAME
		+	|Name of the Origin. Origin Names must be unic.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |OUTPUT_CONC
		+	| rowspan="2" |Output Integration Type
		+	|1
		+	|Uses maximum values for integration
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|Uses average values for integration
		+	|-
		+	| Water
		+	|Lagrangian
		+	|OUTPUT_MAX_TRACER
		+	|Checks if the users wants to output the maximum tracer concentration in each cell
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|OUTPUT_TIME
		+	|Output Time
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|OVERLAY_VELOCITY
		+	|Checks if the user wants to add an aditional velocity to the particles
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTIC_BOX
		+	|Link to the data file which contains the definition of the boxes used for particle emission
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_COEF_SED
		+	|Partition coefficent in the sediment.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_COEF_WATER
		+	|Partition coefficient in the water column.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_COUPLE_SED
		+	|Concentration of the dissolved phase in the intersticial water. The dissolved phase is admitted with a constant concentration.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_COUPLE_WATER
		+	|Concentration of the dissolved phase. The dissolved phase is admitted with a constant
		+	concentration
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_RATE_SED
		+	|Rate of transfer between the two phases.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_RATE_WATER
		+	|Rate of transfer between the two phases.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_SED
		+	|Checks if the tracers has two phases
		+	(adsorbe and dissolved) in the sediment
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|PARTITION_WATER
		+	|Checks if the tracers has two phases
		+	(adsorbe and dissolved) in the water column.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|POINT_VOLUME
		+	|Volume of instantanous emission
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|POSITION_CELLS
		+	|X and Y Position of the origin in grid cells.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|POSITION_METERS
		+	|X and Y Position of the origin in meters.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|RESTART_FILE_OUTPUT_TIME
		+	|Output Time to write restart files
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|RESTART_FILE_OVERWRITE
		+	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|SED_VELOCITY
		+	|Sedimentation Velocity.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |SEDIMENTATION
		+	| rowspan="2" |Sedimentation type.
		+	|Imposed
		+	|
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Stokes
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|SPLIT_PART
		+	|Split big particles.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|START_PARTIC_EMIT
		+	|The Start Time of the continuous emission. By default is equal to the model start time.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|STATISTICS
		+	|Wheter to calculate or not the statistic.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|STATISTICS_FILE
		+	|File name with the statistics definition.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|STATISTICS_LAG
		+	|Do a frequency analysis tracer by tracer.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|STOP_PARTIC_EMIT
		+	|The Stop Time of the continuous emission. By default is equal to the model end time.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|T90
		+	|Coliform Decay rate.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |T90_VAR_METHOD_1
		+	| rowspan="2" |Method to compute T90 function.
		+	|1
		+	|Fecal decay according to Canteras ''et al.'' (1995)
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|Fecal decay according to Chapra (1997)
		+	|-
		+	| Water
		+	|Lagrangian
		+	|T90_VARIABLE
		+	|Check if the user wants to compute T90 function of ambient properties: salinity,temperature,light.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|TAU_DEP
		+	|Critical shear stress of deposition.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|TAU_ERO
		+	|Critical shear stress of erosion.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|THEORIC_AREA
		+	|Uses Theoric Area for Oil Processes.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|THICKNESS_METERS
		+	|The initial thickness of the particles. (For floating particle only). (Used to calculate the area if the emission is accident and the total number of particles if the emission is box)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|TIME_DECAY
		+	|Decay time is used to compute a relxation term that makes the critical shear stress of erosion tend to the average tracer erosion rate of the cell where the tracer is deposited.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|TIME_SERIE
		+	|Checks if the user wants to write time series of the particle properties
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|TIME_SERIE_LOCATION
		+	|Gets the position of the water points in the Map Module.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |TURB_V
		+	| rowspan="2" |Vertical turbulence parameterization
		+	|Constant
		+	|Constant Parameterization
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Profile
		+	|Parameterization based on the velocity profile
		+	|-
		+	| Water
		+	|Lagrangian
		+	|TVOL200
		+	|Time needed for a particle to double volume.
		+	Turns particles volume variation on.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|UNITS
		+	|Units of the property.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|VARVELH
		+	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|VARVELHX
		+	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity  UStandardDeviation = VarVelHX * Vel + VarVelH
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|VARVELV
		+	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|VARVELVX
		+	|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|VISCCINREF
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|VOLFAC
		+	|Factor which indicates when a particle with variable volume is to be deleted (Volume > Initial Volume * VOLFAC)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Lagrangian
		+	| rowspan="2" |VOLUME_INCREASE
		+	| rowspan="2" |How volume increase is calculated
		+	|Double
		+	|The doublication occur after the time given by TVOL200
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Velocity
		+	|The doublication occur after the time given by TVOL200, but also depends on the local velocity
		+	|-
		+	| Water
		+	|Lagrangian
		+	|WINDCOEF
		+	|Wind transfer Coefficient
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|WINDXY
		+	|If this keyword is defined than the wind velocity defined in the atmosphere module is override and the wind use by the tracers is this one
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Lagrangian
		+	|WQM_DATA_FILE
		+	|Location of the File defining the Water Quality configuration.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module Model===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleModel.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	|Water
		+	|Model
		+	|OPENMP_NUM_THREADS
		+	|Sets the number of threads to use with openmp.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	|Land
		+	|Model
		+	|SYNC_DT
		+	|Provide results at the exacts time
		+	|0/1
		+	|Inactive/Active
		+	|0
		+	|
		+	|Boolean
		+	|}
		+
		+	=== Module Oil===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleOil.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Water
		+	|Oil
		+	|API
		+	|American Petroleum Institute (API) Gravity
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|ASPHALTENECONTENT
		+	|Asphaltene Content
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|CEMULS
		+	|Emulsification Constant ((% of evaporated oil before emulsification brgins)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|CPDISTEXP
		+	|Cumulative Volume Fraction of Oil Distilled
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Oil
		+	| rowspan="2" |DISPERSIONMETHOD
		+	| rowspan="2" |Method for Dispersion
		+	|Delvigne
		+	|Dispersion parameterized with Delvigne formulation
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Mackay
		+	|Dispersion parameterized with Mackay formulation
		+	|-
		+	| Water
		+	|Oil
		+	|DT_OIL_INTPROCESSES
		+	|Time Step used in computation of oil internal processes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|EFFICIENCY
		+	|% of Area sprayed effectively dispersed
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Oil
		+	| rowspan="2" |EMULSIFICATIONMETHOD
		+	| rowspan="2" |Method for Emulsification
		+	|Mackay
		+	|Emulsification parameterized following Mackay formulation
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Rasmussen
		+	|Emulsification parameterized following Rasmussen formulation
		+	|-
		+	| Water
		+	|Oil
		+	|EmulsParameter
		+	|Water Uptake Parameter
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|END_CHEM_DISPERSION
		+	|Ending Time of Dispersant Application
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|END_MEC_CLEANUP
		+	|Ending Time of Mechanical Cleanup Operation
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Oil
		+	| rowspan="3" |EVAPORATIONMETHOD
		+	| rowspan="3" |Method for Evaporation
		+	|EvaporativeExposure
		+	|Evaporation computed with evaporative exposure method
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|Fingas
		+	|Evaporation computed with Fingas formulations
		+	|-
		+	|PseudoComponents
		+	|Evaporation computed with pseudocomponents method
		+	|-
		+	| Water
		+	|Oil
		+	|FINGAS_EVAP_CONST1
		+	|Fingas Empirical Constant 1 (Necessary If Fingas_Evap_Emp_Data = 1)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|FINGAS_EVAP_CONST2
		+	|Fingas Empirical Constant 2 (Necessary If Fingas_Evap_Emp_Data = 1)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|FINGAS_EVAP_EMP_DATA
		+	|Knowledge of Empirical Data for Evaporation
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Oil
		+	| rowspan="2" |FINGAS_EVAP_EQTYPE
		+	| rowspan="2" |Evaporation Equation Type
		+	|Logarithmic
		+	|Logarithmic Equation Type for Evaporation
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|SquareRoot
		+	|Square Root Equation Type for Evaporation
		+	|-
		+	| Water
		+	|Oil
		+	|MAXVWATERCONTENT
		+	|Maximum Volume Water Content
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|NBRDISTCUTS
		+	|Number of Distillation Cuts
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_CHEM_DISPERSION
		+	|Computes Chemical Dispersants Application
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_DISPERSION
		+	|Computes Oil Dispersion Process
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_DISSOLUTION
		+	|Computes Oil Dissolution Process
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_EMULSIFICATION
		+	|Computes oil emulsification process
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_EVAPORATION
		+	|Computes Oil Evaporation Process
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_MEC_CLEANUP
		+	|Computes Mechanical Cleanup Operation
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_SEDIMENTATION
		+	|Computes Oil Sedimentation Process
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_SPREADING
		+	|Computes Oil Spreading Process
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|OIL_TIMESERIE
		+	|Name of the Output results file
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Oil
		+	| rowspan="2" |OILTYPE
		+	| rowspan="2" |Oil Type
		+	|Crude
		+	|Crude Oil
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|Refined
		+	|Refined oil
		+	|-
		+	| Water
		+	|Oil
		+	|OWINTERFACIALTENSION
		+	|Oil-Water Interfacial Tension
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|P_AREA_SPRAYED
		+	|% of Spill Area sprayed whit dispersant
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|PERC_MASSDIST180
		+	|%(Wheight) of Oil Evaporated until 180ºC (Necessary If Fingas_Evap_Emp_Data = 0)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|POURPOINT
		+	|Pour Point
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|RECOVERY
		+	|rate or volume of Emulsion Recovered
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|RECOVERY_DATAFORM
		+	|DataForm of emulsion recovered
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |Oil
		+	| rowspan="2" |SPREADINGMETHOD
		+	| rowspan="2" |Method for Spreading
		+	|Fay
		+	|Mechanical spreading simply based on Fay theory
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|ThicknessGradient
		+	|Oil mechanical spreading based on thickness gradients, parameterised with fay theory
		+	|-
		+	| Water
		+	|Oil
		+	|START_CHEM_DISPERSION
		+	|Starting Time of Dispersant Application
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|START_MEC_CLEANUP
		+	|Starting Time of Mechanical Cleanup Operation
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|TDISTEXP
		+	|Vapour Temperature of Distillate
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|TEMPVISCREF
		+	|Temperature of Reference Viscosity
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|USERCOEFVELMANCHA
		+	|Empirical Thickness Gradient's Spreading Velocity Coefficient
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|VISCCINREF
		+	|Reference Cinematic Viscosity
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|VISCREF
		+	|Reference Dynamic Viscosity
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Oil
		+	|WAXCONTENT
		+	|Wax Content
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module Sand===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSand.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Water
		+	|Sand
		+	|BATHYM_EVOLUTION
		+	|it´s a conditional keyword: check if the user wants to let the bathymetry evolve due to sand transport
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|BATIM_DT
		+	|The time step of the BATIM evolution
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|BOUNDARY
		+	|check what type off boundary condition the user wants: 1 -> NullGradient, 2 -> Cyclic
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|BOX_FILENAME
		+	|path to the file where the boxes are defined
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|BOXFLUXES
		+	|It´s a conditional keyword to compute fluxes between boxes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|CLASS_ID
		+	|??
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|CLASS_NAME
		+	|??
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|CLASSES_NUMBER
		+	|The number of sand classes the user wants to define
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|CRITICAL_SLOP
		+	|slope above which there is lateral erosion.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|DENS_SAND
		+	|Sand density
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|DISCHARGES
		+	|??
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|FILTER_RADIUS
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|FILTER_SCHEME
		+	|the keyword can be equal to NO FILTER or MODIFY LAX.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|FLUX_SLOP
		+	|??
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|OLD
		+	|it´s a conditional keyword: check if the user wants to start from the final condition of a previous run
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|OUTPUT_TIME
		+	|output time step
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|POROSITY
		+	|porosity of the sediments
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|SAND_DT
		+	|The time step of the SAND evolution
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|SAND_MIN
		+	|The minimum sand layer thickness
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|SMOOTH_SLOP
		+	|it´s a conditional keyword: check if the user wants to compute transport in strong slopes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|TAU_MAX
		+	|the maximum bottom shear stress
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|TIME_SERIE
		+	|it´s a conditional keyword: checks out if the user pretends to write a time serie for the transport fluxes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|TIME_SERIE_LOCATION
		+	|path to the file where the boxes are defined
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|TRANSPORT_FACTOR
		+	|it´s a factor to amplify the transport
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Sand
		+	|TRANSPORT_METHOD
		+	|Methodology use to compute the sand transport
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module SedimentProperties===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSedimentProperties.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|ADVECTION_DIFFUSION
		+	|Compute property advection-diffusion
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|BIOTURBATION
		+	|Compute bioturbation processes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|BIOTURBATION_COEF
		+	|Bioturbation diffusion coefficient
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|BIOTURBATION_DECAY_COEF
		+	|Decay factor to compute decay of bioturbation effect
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|BIOTURBATION_DEPTH
		+	|Depth till which bioturbation diffusion is constant (m)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|BOX_TIME_SERIE
		+	|Ouputs results in box time series
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|BOXFLUXES
		+	|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|DESCRIPTION
		+	|Brief description of the property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |SedimentProperties
		+	| rowspan="2" |DIFFUSION_METHOD
		+	| rowspan="2" |Method to compute diffusion coefficient correction for the sediments
		+	|1
		+	|Berner, 1980
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|2
		+	|Soetaert, 1996
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|IS_COEF
		+	|Conversion factor to I.S. units
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|MIN_VALUE
		+	|Minimum allowed value of property concentration
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|MOLECULAR_DIFF_COEF
		+	|Infinite dilution molecular diffusion coefficient
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|NAME
		+	|Property name
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|OLD
		+	|Initialization from previous run (overrides FillMatrix)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|OUTPUT_HDF
		+	|Ouputs results in HDF5 format
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|OUTPUT_TIME
		+	|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|PARTICULATE
		+	|Property physical state: 0 - Dissolved ; 1 - Particulate
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|PARTITION
		+	|Compute partition between dissolved-particulate phases
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|PARTITION_COUPLE
		+	|Name of the property (oposite phase) to compute partition
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|SEDIMENT_QUALITY
		+	|Compute sediment quality processes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|SURFACE_FLUXES
		+	|Compute fluxes at the sediment surface
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|TIME_SERIE
		+	|Output time series for sediment property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|TIME_SERIE_LOCATION
		+	|Path to time serie locations file
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|SedimentProperties
		+	|UNITS
		+	|Property units
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module Turbine===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbine.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+
		+	|-
		+	| Water
		+	|Turbine
		+	|CD
		+	|Drag coef for the structure
		+	|
		+	|Not yet implemented
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbine
		+	|CP
		+	|Power coefficient value. Power coefficient that quantifies the amount of power extracted from the flow
		+	|0-1
		+	|percentage between 0 and 1
		+	|
		+	|
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|CT
		+	|Thrust coefficient value. Power coefficient that quantifies the forced exerted by the turbine to the flow
		+	|0-1
		+	|percentage between 0 and 1
		+	|
		+	|
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|DIAMETER
		+	|Device diameter length
		+	|
		+	|
		+	|
		+	|m
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|HEIGHT
		+	|The heigh of the centre of the turbine respect the floor
		+	|
		+	|
		+	|
		+	|m
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|LOWER_VEL
		+	|Cut-in speed. The minimum speed at which the device starts working
		+	|
		+	|
		+	|0
		+	|m/s
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|POS_LAT
		+	|Latitude position in geographic coordinates or y position in metric coordinates.
		+	|
		+	|
		+	|
		+	|
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|POS_LONG
		+	|Longitude position in geographic coordinates and x position in metric coordinates.
		+	|
		+	|
		+	|
		+	|
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|TIMESERIE
		+	|Activates the timeserie module and prints the output data of the turbine
		+	|0/1
		+	|activates the ouput data
		+	|
		+	|
		+	|Boolean
		+	|-
		+	| Water
		+	|Turbine
		+	|UPPER_VEL
		+	|Design speed.
		+	|
		+	|
		+	|10
		+	|m/s
		+	|Real
		+	|-
		+	| Water
		+	|Turbine
		+	|WIDTH_STRUCT
		+	|Width of the structure
		+	|
		+	|Not yet implemented
		+	|
		+	|
		+	|
		+	|-
		+	|}
		+
		+	=== Module Turbulence===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbulence.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Water
		+	|Turbulence
		+	|BACKGROUND_VISCOSITY
		+	|Background viscosity/diffusivity.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|CONST_MIXING_LENGTH_HORIZONTAL
		+	|Default horizontal mixing length. Used to compute the random trajectory of particle (Lagrangian Module
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|CONTINUOUS
		+	|Check if the user wants to perform a simulation startinf from a previous run (1) or not (0).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|DT_OUTPUT_TIME
		+	|Time interval for time serie.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|HORCON
		+	|Smaagorinsky coefficient. Used only if MODVISH is "smagorinsky".
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|HREF_VIS
		+	|Water column reference thickness used in the for the option MODVISH "estuary".
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|MIXLENGTH_MAX
		+	|Maximum allowed mixing length. Parameter used in the Nihoul and Leendertse parameterization.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|MIXLENGTH_V
		+	|Default vertical mixing length. Used to compute the random trajectory of particle (Lagrangian Module).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|MLD
		+	|Checks out if the user pretends to compute the mixed layer length (1) or not (0).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|MLD_BOTTOM
		+	|Checks out if the user pretends to compute the bottom mixed layer length (1) or not (0).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |Turbulence
		+	| rowspan="3" |MLD_Method
		+	| rowspan="3" |
		+	|1
		+	|Turbulent kinetic energy (TKE) inferior to a predefined minimum.
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|2
		+	|Richardson number (Ri) superior to a critical value.
		+	|-
		+	|3
		+	|Maximum value of Brunt-Vaisalla frequency (N)
		+	|-
		+	| rowspan="7" |Water
		+	| rowspan="7" |Turbulence
		+	| rowspan="7" |MODTURB
		+	| rowspan="7" |Vertical eddy viscosity model
		+	|backhaus
		+	|Uses Backhaus turbulence scheme.
		+	| rowspan="7" |
		+	| rowspan="7" |
		+	| rowspan="7" |
		+	|-
		+	|constant
		+	|Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing.
		+	|-
		+	|file2D
		+	|Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
		+	|-
		+	|leendertsee
		+	|Uses Leendertsee turbulence scheme.
		+	|-
		+	|nihoul
		+	|Uses Nihoul turbulence scheme.
		+	|-
		+	|pacanowski
		+	|Uses Pacanowski turbulence scheme.
		+	|-
		+	|turbulence_equation
		+	|Uses a turbulence equation for closure. This is only to be used with GOTM module.
		+	|-
		+	| rowspan="4" |Water
		+	| rowspan="4" |Turbulence
		+	| rowspan="4" |MODVISH
		+	| rowspan="4" |Horizontal eddy viscosity model.
		+	|constant
		+	|Constant horizontal viscosity
		+	| rowspan="4" |
		+	| rowspan="4" |
		+	| rowspan="4" |
		+	|-
		+	|estuary
		+	|
		+	|-
		+	|file2D
		+	|Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
		+	|-
		+	|smagorinsky
		+	|Smagorinsky turbulence scheme.
		+	|-
		+	| Water
		+	|Turbulence
		+	|NYQUIST
		+	|Nyquist frequency used for mixing length calculation.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|OUTPUT_PROFILE
		+	|Perform profile outputs in HDF5
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|OUTPUT_TIDE
		+	|Checks out if the user pretends to write tidal information in HDF output (1) or not (0).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|OUTPUT_TIME
		+	|Intrevals of time between outputs.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|PRANDTL_0
		+	|Vertical Prandtl number
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|RESTART_FILE_OVERWRITE
		+	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|RICH_MLD
		+	|Ri used to compute the surface mixing length based on the Ri number.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|STATISTICS_MLD
		+	|Checks out if the user pretends to output statics for the surface mixing length (1) or not (0).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|STATISTICS_MLD_FILE
		+	|File name for output statistics of surface mixing length.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|TIME_SERIE
		+	|Checks out if the user pretends to write time series of this property (1) or not (0).
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|TIME_SERIE_LOCATION
		+	|Path to time serie location file
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|TKE_MLD
		+	|TKE limit used to compute the surface mixing length based on the TKE.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|VISCOSITY_H
		+	|Default horizontal viscosity.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|VISCOSITY_V
		+	|Default vertical viscosity.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|VISH_REF
		+	|Horizontal viscosity used as the minimum value for viscosity if MODVISH is either "estuary" or
		+	"smagorinsky".
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|Turbulence
		+	|VREF_VIS
		+	|Reference velocity used if MODVISH is "estuary".
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|}
		+
		+	=== Module WaterProperties===
		+	[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleWaterProperties.F90 Source Code]
		+	{| class="wikitable"
		+	|-
		+	! scope="col" |Project
		+	! scope="col" |Module
		+	! scope="col" |Keyword
		+	! scope="col" |Keyword description
		+	! scope="col" |Options
		+	! scope="col" |Option description
		+	! scope="col" |Default Value
		+	! scope="col" |Units
		+	! scope="col" |Type
		+	|-
		+	| Water
		+	|WaterProperties
		+	|ADV_DIF_NUM_STABILITY
		+	|Verifies advection-diffusion numerical stability for this property.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="5" |Water
		+	| rowspan="5" |WaterProperties
		+	| rowspan="5" |ADV_METHOD_H
		+	| rowspan="5" |Horizontal advection discretization.
		+	|1
		+	|UpwindOrder1
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	|-
		+	|2
		+	|UpwindOrder2
		+	|-
		+	|3
		+	|UpwindOrder3
		+	|-
		+	|4
		+	|P2_TVD
		+	|-
		+	|5
		+	|CentralDif
		+	|-
		+	| rowspan="5" |Water
		+	| rowspan="5" |WaterProperties
		+	| rowspan="5" |ADV_METHOD_V
		+	| rowspan="5" |Vertical advection discretization.
		+	|1
		+	|UpwindOrder1
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	|-
		+	|2
		+	|UpwindOrder2
		+	|-
		+	|3
		+	|UpwindOrder3
		+	|-
		+	|4
		+	|P2_TVD
		+	|-
		+	|5
		+	|CentralDif
		+	|-
		+	| Water
		+	|WaterProperties
		+	|ADVECTION_DIFFUSION
		+	|Property transported by advection and diffusion.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |WaterProperties
		+	| rowspan="2" |ADVECTION_H_IMP_EXP
		+	| rowspan="2" |Horizontal advection computed using a implicit/explicit discretization for this property.
		+	|0
		+	|Implicit discretization
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|1
		+	|Explicit discretization
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |WaterProperties
		+	| rowspan="2" |ADVECTION_V_IMP_EXP
		+	| rowspan="2" |Vertical advection computed using a implicit/explicit discretization for this property.
		+	|0
		+	|Implicit discretization.
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|1
		+	|Explicit discretization.
		+	|-
		+	| Water
		+	|WaterProperties
		+	|AGE_USING_WATERPOINTS
		+	|Compute age using Waterpoints. If FALSE then age is computed using Openpoints.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|ALTITUDE
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|BOTTOM_FLUXES
		+	|This property has bottom fluxes
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="8" |Water
		+	| rowspan="8" |WaterProperties
		+	| rowspan="8" |BOUNDARY_CONDITION
		+	| rowspan="8" |Boundary condition for this property.
		+	|1
		+	|MassConservation
		+	| rowspan="8" |
		+	| rowspan="8" |
		+	| rowspan="8" |
		+	|-
		+	|2
		+	|ImposedValue
		+	|-
		+	|3
		+	|VerticalDiffusion
		+	|-
		+	|4
		+	|NullGradient
		+	|-
		+	|5
		+	|SubModel
		+	|-
		+	|6
		+	|Orlanski
		+	|-
		+	|7
		+	|MassConservation + NullGradient
		+	|-
		+	|8
		+	|CyclicBoundary
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |WaterProperties
		+	| rowspan="2" |BOUNDARY_INITIALIZATION
		+	| rowspan="2" |Processes considered to initialize the boundary values of this property
		+	|EXTERIOR
		+	|A value exterior to the domain is be imposed (a constant value).
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|INTERIOR
		+	|Boundaries equal to the values given
		+	in the same cells during the domain initialization.
		+	|-
		+	| Water
		+	|WaterProperties
		+	|BOX_TIME_SERIE
		+	|Checks to see if the user pretends to write a time serie inside each box for this property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|BOXFLUXES
		+	|Path to the file with the boxes definitions.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|CEQUALW2
		+	|This property has CEQUALW2 model as a sink and source
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DATA_ASSIMILATION
		+	|Data assimilation scheme
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DECAY_TIME
		+	|Decay time of this property in the boundary.
		+	|0
		+	|Property value at the boundary remains constant.
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DEFAULTBOUNDARY
		+	|The default value of a specific water property imposed in the open boundary
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="5" |Water
		+	| rowspan="5" |WaterProperties
		+	| rowspan="5" |DENSITY_METHOD
		+	| rowspan="5" |Method to compute water density
		+	|1
		+	|Leendertse
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	|-
		+	|2
		+	|UNESCO (''in situ'' temperature)
		+	|-
		+	|3
		+	|Linear
		+	|-
		+	|4
		+	|Mellor 1996
		+	|-
		+	|5
		+	|Jackett and McDougall 1995
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DESCRIPTION
		+	|Description of this property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="2" |Water
		+	| rowspan="2" |WaterProperties
		+	| rowspan="2" |DIFFUSION_V_IMP_EXP
		+	| rowspan="2" |Vertical diffusion computed using a implicit/explicit discretization for this property.
		+	|0
		+	|Implicit discretization.
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	| rowspan="2" |
		+	|-
		+	|1
		+	|Explicit discretization.
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DISCHARGES
		+	|Property is discharged.
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DISCHARGES_TRACKING
		+	|This property writes discharges as time serie
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| rowspan="3" |Water
		+	| rowspan="3" |WaterProperties
		+	| rowspan="3" |DOSAT_TYPE
		+	| rowspan="3" |Method to compute dissolved oxygen saturation
		+	|1
		+	|Apha
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	| rowspan="3" |
		+	|-
		+	|2
		+	|Henry
		+	|-
		+	|3
		+	|Mortimer
		+	|-
		+	| Water
		+	|WaterProperties
		+	|DT_INTERVAL
		+	|DT to compute this property evolution.
		+	Only defined if no advection_difusion or sink and source model chosen
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|EMPIRIC_COEF
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|EXTINCTION_PARAMETER
		+	|Parameter that multiplies by this property concentration to compute light extinction when SW_EXTINCTION_TYPE:6 (multiparameter option)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|FILTRATION
		+	|Compute filtration process as a sink
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|FIRSTPROP
		+	|First Property defined in a WQ rate relation
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|FREE_CONVECTION
		+	|Option to mix instable density profiles
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|INSTANT_MIXING
		+	|This option mix instantaneously the all water column for this property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|IS_COEF
		+	|Conversion factor between IS units and the user defined units for this property
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|LIFE
		+	|This property has Life model as a sink and source
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|LIGHT_EXTINCTION
		+	|Check if this property is used to compute light extinction when  SW_EXTINCTION_TYPE : 6 (multiparameter)
		+	|
		+	|
		+	|
		+	|
		+	|
		+	|-
		+	| Water
		+	|WaterProperties
		+	|MACROALGAE
		+	|Defines if property is included in macroalgae biogeochemical processes
		+	|
		+	|
		+	|
		+	|
	|		|
	|-		|-
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|DT_INTERVAL	+	|MACROALGAE_HEIGHT
−	|DT to compute this property evolution.	+	|Macroalgae reference height
−	Only defined if no advection_difusion or sink and source model chosen
	|		|
	|		|
Line 12,605:		Line 14,864:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|EMPIRIC_COEF	+	|MACROALGAE_MASS
−	|	+	|Initial distribution of macroalgae attached to the bottom
	|		|
	|		|
Line 12,615:		Line 14,874:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|EXTINCTION_PARAMETER	+	|MAX_VALUE
−	|Parameter that multiplies by this property concentration to compute light extinction when SW_EXTINCTION_TYPE:6 (multiparameter option)	+	|Maximum allowed value of property concentration
	|		|
	|		|
Line 12,625:		Line 14,884:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|FILTRATION	+	|MIN_VALUE
−	|Compute filtration process as a sink	+	|Mininum value of this property
	|		|
	|		|
Line 12,635:		Line 14,894:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|FIRSTPROP	+	|MODEL
−	|First Property defined in a WQ rate relation	+	|Name of the biogeochemical to which the rate belongs
	|		|
	|		|
Line 12,645:		Line 14,904:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|FREE_CONVECTION	+	|NAME
−	|Option to mix instable density profiles	+	|Name of this property
	|		|
	|		|
Line 12,655:		Line 14,914:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|INSTANT_MIXING	+	|NAME
−	|This option mix instantaneously the all water column for this property	+	|Rate name ex: PhyZoo
	|		|
	|		|
Line 12,665:		Line 14,924:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|IS_COEF	+	|NULLDIF
−	|Conversion factor between IS units and the user defined units for this property	+	|Consider null diffusion of this property if velocities are null.
	|		|
	|		|
Line 12,675:		Line 14,934:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|LIFE	+	|OLD
−	|This property has Life model as a sink and source	+	|Check if user wants to continue the run with results of a previous run.
	|		|
	|		|
Line 12,685:		Line 14,944:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|LIGHT_EXTINCTION	+	|OUTPUT_HDF
−	|Check if this property is used to compute light extinction when  SW_EXTINCTION_TYPE : 6 (multiparameter)	+	|Check to see if this property is to be written in the HDF file.
	|		|
	|		|
Line 12,695:		Line 14,954:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|MACROALGAE	+	|OUTPUT_PROFILE
−	|Defines if property is included in macroalgae biogeochemical processes	+	|Perform profile outputs in HDF5 format
	|		|
	|		|
Line 12,705:		Line 14,964:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|MACROALGAE_HEIGHT	+	|OUTPUT_TIME
−	|Macroalgae reference height	+	|Output times for HDF output file
	|		|
	|		|
Line 12,715:		Line 14,974:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|MACROALGAE_MASS	+	|PARTICULATE
−	|Initial distribution of macroalgae attached to the bottom	+	|Checks if the user wants this property to be particulate
	|		|
	|		|
Line 12,725:		Line 14,984:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|MAX_VALUE	+	|PARTITION
−	|Maximum allowed value of property concentration	+	|This property has partition as a sink and source
	|		|
	|		|
Line 12,735:		Line 14,994:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|MIN_VALUE	+	|PARTITION_COUPLE
−	|Mininum value of this property	+	|Name of property (dissolved/particulated) to couple this property
	|		|
	|		|
Line 12,745:		Line 15,004:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|MODEL	+	|PARTITION_FRACTION
−	|Name of the biogeochemical to which the rate belongs	+	|
	|		|
	|		|
Line 12,755:		Line 15,014:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|NAME	+	|PARTITION_RATE
−	|Name of this property	+	|
	|		|
	|		|
Line 12,765:		Line 15,024:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|NAME	+	|PRESSURE_CORRECTION
−	|Rate name ex: PhyZoo	+	|Check to see if Pressure correction is going to be computed.
	|		|
	|		|
Line 12,775:		Line 15,034:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|NULLDIF	+	|RATIO_C_CHLA
−	|Consider null diffusion of this property if velocities are null.	+	|Plankton Carbon/Chlorophyll Ratio
	|		|
	|		|
Line 12,785:		Line 15,044:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|OLD	+	|REFERENCE_DENSITY
−	|Check if user wants to continue the run with results of a previous run.	+	|Reference water density
	|		|
	|		|
Line 12,795:		Line 15,054:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|OUTPUT_HDF	+	|REFERENCE_SPECIFICHEAT
−	|Check to see if this property is to be written in the HDF file.	+	|Specific heat reference of water. seawater in GOTM - 3985 J/kg/ºC
		+	Freshwater in Chapra - 4180 J/kg/ºC
	|		|
	|		|
Line 12,805:		Line 15,065:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|OUTPUT_PROFILE	+	|RESTART_FILE_OUTPUT_TIME
−	|Perform profile outputs in HDF5 format	+	|Output Time to write restart files
	|		|
	|		|
Line 12,815:		Line 15,075:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|OUTPUT_TIME	+	|RESTART_FILE_OVERWRITE
−	|Output times for HDF output file	+	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
	|		|
	|		|
Line 12,825:		Line 15,085:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|PARTICULATE	+	|SALINITY_EFFECT
−	|Checks if the user wants this property to be particulate	+	|Compute partition coefficient between the particulate and the dissolved phase as a function of salinity, for this property
	|		|
	|		|
Line 12,835:		Line 15,095:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|PARTITION	+	|SCHMIDT_BACKGROUND_V
−	|This property has partition as a sink and source	+	|see SCHMIDT_COEF_V.
	|		|
	|		|
Line 12,845:		Line 15,105:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|PARTITION_COUPLE	+	|SCHMIDT_COEF_V
−	|Name of property (dissolved/particulated) to couple this property	+	|Schmidt number for the vertical.
	|		|
	|		|
Line 12,855:		Line 15,115:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|PARTITION_FRACTION	+	|SCHMIDT_NUMBER_H
−	|	+	|Schmidt number for the horizontal.
	|		|
	|		|
Line 12,865:		Line 15,125:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|PARTITION_RATE	+	|SECONDPROP
−	|	+	|Second property defined in a WQ rate relation
	|		|
	|		|
Line 12,875:		Line 15,135:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|PRESSURE_CORRECTION	+	|SED_REF_CONC
−	|Check to see if Pressure correction is going to be computed.	+	|Reference cohesive sediment concentration to use in this property
	|		|
	|		|
Line 12,885:		Line 15,145:
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|RATIO_C_CHLA	+	|SIMPLE_OUTPUT
−	|Plankton Carbon/Chlorophyll Ratio	+	|HDF outputs include only the basic properties
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|	+	|1
−	|
	|		|
		+	|Boolean
	|-		|-
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|REFERENCE_DENSITY	+	|SIMPLE_WINDOW_OUTPUT
−	|Reference water density	+	|HDF window outputs include only the basic properties
−	|	+	|0/1
−	|	+	|Inactive/Active
−	|	+	|1
−	|
	|		|
		+	|Boolean
	|-		|-
	| Water		| Water
	|WaterProperties		|WaterProperties
−	|REFERENCE_SPECIFICHEAT	+	|SMALLDEPTH_LIMIT
−	|Specific heat reference of water. seawater in GOTM - 3985 J/kg/ºC	+	|Water column thickness below which homogeneous water properties is assumed.
−	Freshwater in Chapra - 4180 J/kg/ºC
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|RESTART_FILE_OUTPUT_TIME
−	|Output Time to write restart files
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|RESTART_FILE_OVERWRITE
−	|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SALINITY_EFFECT
−	|Compute partition coefficient between the particulate and the dissolved phase as a function of salinity, for this property
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SCHMIDT_BACKGROUND_V
−	|see SCHMIDT_COEF_V.
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SCHMIDT_COEF_V
−	|Schmidt number for the vertical.
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SCHMIDT_NUMBER_H
−	|Schmidt number for the horizontal.
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SECONDPROP
−	|Second property defined in a WQ rate relation
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SED_REF_CONC
−	|Reference cohesive sediment concentration to use in this property
−	|
−	|
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|SMALLDEPTH_LIMIT
−	|Water column thickness below which homogeneous water properties is assumed.
	|		|
	|		|
Line 13,090:		Line 15,259:
	|		|
	|		|
−	|	+	|
		+	|-
		+	| rowspan="5" |Water
		+	| rowspan="5" |WaterProperties
		+	| rowspan="5" |TVD_LIMIT_H
		+	| rowspan="5" |Horizontal TVD limitation
		+	|1
		+	|MinMod
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	|-
		+	|2
		+	|VanLeer
		+	|-
		+	|3
		+	|Muscl
		+	|-
		+	|4
		+	|Superbee
		+	|-
		+	|5
		+	|PDM
		+	|-
		+	| rowspan="5" |Water
		+	| rowspan="5" |WaterProperties
		+	| rowspan="5" |TVD_LIMIT_V
		+	| rowspan="5" |Vertical TVD limitation
		+	|1
		+	|MinMod
		+	| rowspan="5" |
		+	| rowspan="5" |
		+	| rowspan="5" |
	|-		|-
−	| Water
−	|WaterProperties
−	| rowspan="5" |TVD_LIMIT_H
−	| rowspan="5" |Horizontal TVD limitation
−	|1
−	|MinMod
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
	|2		|2
	|VanLeer		|VanLeer
−	|
−	|
−	|
	|-		|-
−	| Water
−	|WaterProperties
	|3		|3
	|Muscl		|Muscl
−	|
−	|
−	|
	|-		|-
−	| Water
−	|WaterProperties
	|4		|4
	|Superbee		|Superbee
−	|
−	|
−	|
	|-		|-
−	| Water
−	|WaterProperties
	|5		|5
	|PDM		|PDM
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	| rowspan="5" |TVD_LIMIT_V
−	| rowspan="5" |Vertical TVD limitation
−	|1
−	|MinMod
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|2
−	|VanLeer
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|3
−	|Muscl
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|4
−	|Superbee
−	|
−	|
−	|
−	|-
−	| Water
−	|WaterProperties
−	|5
−	|PDM
−	|
−	|
−	|
	|-		|-
	| Water		| Water

---

Latest revision as of 01:05, 10 May 2025

MOHID Base 1

Module Benthos

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	Benthos	ANOXIA_RELEASE	Compute nutrient release under anoxic conditions			0		Boolean
Base 1	Benthos	BACMINSUB	Minimum substrate concentration for bacterial uptake			0.01		Real
Base 1	Benthos	BACNCONS	Nitrogen saturation constant for bacteria			0.08		Real
Base 1	Benthos	BACT	Compute bacteria			0		Boolean
Base 1	Benthos	BACT_MORTALITY	Mortality rate of bacteria			0.1		Real
Base 1	Benthos	BACT_NC_RATIO	Nitrogen to carbon ratio for bacteria			0.18		Real
Base 1	Benthos	BACT_PC_RATIO	Phosphorus to carbon ratio for bacteria			0.024		Real
Base 1	Benthos	BIOSI_DECAY_RATE	Biogenic silica dissolution rate			0.1		Real
Base 1	Benthos	BMAXUPTA	Maximum uptake rate of bacteria			0.2		Real
Base 1	Benthos	BOTTOMRDEPTH	Depth of the bottom reactor (m)			0.3		Real
Base 1	Benthos	DIATOMS	Compute diatoms mortality			0		Boolean
Base 1	Benthos	DIATOMS_MORTALITY	Diatoms mortality rate when deposited			0.03		Real
Base 1	Benthos	DIATOMS_NC_RATIO	Diatoms Nitrogen/Carbon ratio			0.18		Real
Base 1	Benthos	DIATOMS_PC_RATIO	Diatoms Phosphorus/Carbon ratio			0.024		Real
Base 1	Benthos	DIATOMS_SIC_RATIO	Diatoms Silica/Carbon ratio			0.07		Real
Base 1	Benthos	DT	Time step to compute benthic biogeochemical processes			3600	seconds	Real
Base 1	Benthos	MINERALIZATION	Compute mineralization of organic matter			1		Boolean
Base 1	Benthos	MIN_OXYGEN	Minimum oxygen concentration for mineralization to occur			1e-5		Real
Base 1	Benthos	NC_RATIO	Nitrogen/Carbon ratio of organic matter			0.18
Base 1	Benthos	NH4R	NH4 release rate from sediment under anoxia			0.001		Real
Base 1	Benthos	NH4R_TFACTOR	Temperature factor for NH4 release			1.02		Real
Base 1	Benthos	NITROGEN	Compute nitrogen processes			0		Boolean
Base 1	Benthos	OXYGEN	Compute oxygen processes			0		Boolean
Base 1	Benthos	O2_METHOD	Method for oxygen limitation	1	Default
				2	Monod
				3	Exponential
Base 1	Benthos	PC_RATIO	Phosphorus/Carbon ratio of organic matter			0.024		Real
Base 1	Benthos	PELAGIC_MODEL	Pelagic model name to which Module Benthos will be coupled (mandatory)	LifeModel
				WaterQuality
Base 1	Benthos	PHOSPHORUS	Compute phosphorus processes			0		Boolean
Base 1	Benthos	PHYTO	Compute phytoplankton mortality			0		Boolean
Base 1	Benthos	PHYTO_MORTALITY	Phytoplankton mortality rate when deposited			0.03
Base 1	Benthos	PHYTO_NC_RATIO	Phytoplankton Nitrogen/Carbon ratio			0.18
Base 1	Benthos	PHYTO_PC_RATIO	Phytoplankton Nitrogen/Carbon ratio			0.024
Base 1	Benthos	PO4R	PO4 release rate from sediment under anoxia			0.001		Real
Base 1	Benthos	PO4R_TFACTOR	Temperature factor for PO4 release			1.02		Real
Base 1	Benthos	POMPOOLS	Compute particulate organic matter pools			0		Boolean
Base 1	Benthos	PON_DECAY_RATE	Particulate organic nitrogen mineralization rate			0.1		Real
Base 1	Benthos	PON_DECAY_TFACTOR	Particulate Organic Nitrogen temperature influence factor in mineralization Rate			1.02		Real
Base 1	Benthos	POP_DECAY_RATE	Particulate organic phosphorus mineralization rate			0.03		Real
Base 1	Benthos	POP_DECAY_TFACTOR	Particulate Organic Phosphorus temperature influence factor in mineralization rate			1.08		Real
Base 1	Benthos	SILICA	Compute Silica parameters			0		Boolean
Base 1	Benthos	TBCONST1	Bacteria: Constant to control temperature response curve shape			0.05
Base 1	Benthos	TBCONST2	Bacteria: Constant to control temperature response curve shape			0.98
Base 1	Benthos	TBCONST3	Bacteria: Constant to control temperature response curve shape			0.98
Base 1	Benthos	TBCONST4	Bacteria: Constant to control temperature response curve shape			0.02
Base 1	Benthos	TBMAX	Bacteria: Maximum temperature tolerable temperature for growth			35	°C	Real
Base 1	Benthos	TBMIN	Bacteria: Minimum temperature tolerable for growth			5	°C	Real
Base 1	Benthos	TBMAX	Maximum optimal temperature for bacterial growth			25.1	°C	Real
Base 1	Benthos	TBMIN	Minimum optimal temperature for bacterial growth			24.8	°C	Real

Module CEQUALW2

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	CEQUALW2	DTSECONDS	time step, in seconds, between two CEQUALW2 calls
Base 1	CEQUALW2	NAME	Algae Property name as defined on Module GlobalData

Module Discharges

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	Discharges	ALTERNATIVE_LOCATIONS	Activates the automatic search for alternative locations, when the discharge point is not a covered point	0/1	Inactive/Active	0		Boolean
Base 1	Discharges	COORD_X	Longitude of the discharge in geographic coordinates					Real
Base 1	Discharges	COORD_Y	Activates the automatic search for alternative locations, when the discharge point is not a covered point	Latitude of the discharge in geographic coordinates				Real
Base 1	Discharges	CREST_HEIGTH	Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
Base 1	Discharges	DATA_BASE_FILE	Definition of the data base time series file. If there is one, model assumes that the discharge is time variable
Base 1	Discharges	DEFAULT_FLOW_VALUE	Default flow value
Base 1	Discharges	DEFAULT_VELOCITY_VALUE	Default velocity associated with the discharge. Important to compute momentum fluxes
Base 1	Discharges	DEFAULTVALUE	Water property value
Base 1	Discharges	DESCRIPTION	Discharge description
Base 1	Discharges	DISCHARGE_UNIFORM
Base 1	Discharges	FLOW_COLUMN	Column where the flow is defined in the data base time series file
Base 1	Discharges	FLOW_DISTRIBUTION	Chooses the hydrodynamic approximation to be solved in the momentum equation	by cell
				by water column
				by volume
Base 1	Discharges	FLOW_OVER	Computes a negative discharge, function of the water level, also known as spill flow
Base 1	Discharges	IGNORE_ON	This keyword must be active for MOHID MPI runs	0/1	Inactive/Active	0		Boolean
Base 1	Discharges	I_CELL	Line where the discharge is located. When defined, a grid-based discharged is assumed					Integer
Base 1	Discharges	J_CELL	Column where the discharge is located					Integer
Base 1	Discharges	K_CELL	Layer where the discharge is located					Integer
Base 1	Discharges	NAME	Discharge name
Base 1	Discharges	NODE_ID	ID of the discharge, when it isn't grid-based
Base 1	Discharges	TIME_SERIE_COLUMN	This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series.
Base 1	Discharges	U_COLUMN	This keyword is used to give to model the column where the velocity X is defined in the data base time series file
Base 1	Discharges	V_COLUMN	This keyword is used to give to model the column where the velocity Y is defined in the data base time series file
Base 1	Discharges	VERTICAL_DISCHARGE	Serves to specify the discharge distribution in the vertical direction	1	discharge in the bottom cell
				2	discharge in the surface cell
				3	discharge in the cell that intersects the depth defined in the keyword K_DEPTH (no default value)
				4	discharge in the layer defined in the keyword K_CELL (no default value)
				5	Assumes a uniform distribution along the entire water column
Base 1	Discharges	WEIR_COEF	Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
Base 1	Discharges	WEIR_LENGTH	Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).

Module DrainageNetwork

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	DrainageNetwork	ADVECTION_DIFUSION	Compute advection and diffusion of property
Base 1	DrainageNetwork	ADVECTION_SCHEME	Numerical Discretization of Advection.	1	UpwindOrder1 (Upwind scheme of 1st order)
				5	CentralDif (Central differences scheme)
Base 1	DrainageNetwork	CHECK_NODES	Check nodes consistency in the drainage network file
Base 1	DrainageNetwork	CHECK_REACHES	Check reaches consistency in the drainage network file (a reach connects 2 nodes)
Base 1	DrainageNetwork	CONTINUOUS	Computations follow from another simulation
Base 1	DrainageNetwork	DATA_COLUMN	Number of column in the time series file with the downstream water depth values
Base 1	DrainageNetwork	DEFAULT_VALUE	Default value for water depth at the downstream boundary condition
Base 1	DrainageNetwork	DEFAULT_VALUE	Default value for this property. Also used as initial value.
Base 1	DrainageNetwork	DESCRIPTION	Description of property
Base 1	DrainageNetwork	DIFFUSION_SCHEME	Numerical Discretization of Diffusion.	5	CentralDif (Central Differences discretization)
Base 1	DrainageNetwork	DIFFUSIVITY	Diffusivity of property
Base 1	DrainageNetwork	DISCHARGES	Use module discharges
Base 1	DrainageNetwork	DOWNSTREAM_BOUNDARY	Choose downstream boundary condition	0	Dam (flow at the outlet = 0.0)
				1	Normal (solves KynematicWave at the outlet)
				2	ImposedWaterDepth
				3	ImposedWaterLevel
				4	ImposedVelocity
Base 1	DrainageNetwork	FILE_IN_TIME	Downstream boundary condition evolution	NONE	Constant evolution of downstream boundary condition (constant water depth)
				TIMESERIE	Reads a time series with water depth for downstream boundary condition
Base 1	DrainageNetwork	FILENAME	Path to the file with the downstream water depth time serie values
Base 1	DrainageNetwork	GLOBAL_MANNING	Assigns a Manning rugosity coefficient to all the drainage network channels
Base 1	DrainageNetwork	HYDRODYNAMIC_APROX	Chooses the hydrodynamic approximation to be solved in the momentum equation	1	KinematicWave (friction = slope gradient)
				2	DiffusionWave (full St Venant equation except for advection)
				3	DynamicWave (full St Venant equation)
Base 1	DrainageNetwork	INITIAL_WATER_DEPTH	Assigns an initial water depth to all channels. only if continuous computation is not chosen.
Base 1	DrainageNetwork	INITIALIZATION_METHOD	Choose initialization method for this property.	CONSTANT	Constant initialization of property
Base 1	DrainageNetwork	LIMIT_DT_COURANT	Connect/disconnect limitation of dt by courant number	0/1	Inactive/Active	0		Boolean
Base 1	DrainageNetwork	MIN_VALUE	Minimum concentration of property.
Base 1	DrainageNetwork	MIN_WATER_DEPTH	Minimum water column for computations
Base 1	DrainageNetwork	NAME	Name of property
Base 1	DrainageNetwork	NETWORK_FILE	Path to the file that describes nodes and reaches
Base 1	DrainageNetwork	TIME_SERIE	Output of property values in time series files.
Base 1	DrainageNetwork	TIME_SERIE_LOCATION	Path to the file that has the time series location characteristics
Base 1	DrainageNetwork	UNITS	Units of property
Base 1	DrainageNetwork	XS_CALC	Method to compute trapezoidal cross section	1	Analytic
				2	Discretization dH

Module Life

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	Life	AFFINITY_NH4	Affinity for NH4 uptake
Base 1	Life	AFFINITY_NO3	Affinity for NO3 uptake
Base 1	Life	AFFINITY_PO4	Affinity for PO4 uptake
Base 1	Life	ALPHA_CHL	Chl specific initial slop of P vs I curve
Base 1	Life	ASS_EFFIC	Assimilation efficiency
Base 1	Life	ASS_EFFIC_LOW_O2	Assimilation efficiency @ low O2
Base 1	Life	ASSIMIL_EFFIC	Assimilation efficiency
Base 1	Life	BIO_SI_DISS	Biogenic silica dissolution rate
Base 1	Life	CHL_DEGRAD_RATE	Chla degradation rate constant
Base 1	Life	DENS_DEP_MORT	Density-dependence mortality rate
Base 1	Life	DOM_UP_KS	Half saturation value for DOM uptake
Base 1	Life	DOMSL_BAC_KS	Bacteria mediated DOMsl Hydrolysis
Base 1	Life	DOMSL_BAC_VMAX	Vmax for DOMsl Hydrolysis
Base 1	Life	EXC_DOM_SL_FRAC	DOM diverted to semi-labile pool
Base 1	Life	EXCRE_UP_FRAC	Excreted fraction of uptake
Base 1	Life	EXU_NUT_STRESS	Exudation under nutrient stress
Base 1	Life	GRAZ_AVAIL	Availability of Prey X
Base 1	Life	GRAZ_UP_KS	Half saturation value for uptake
Base 1	Life	LIGHT_LIM_METHOD	Light limitation method
Base 1	Life	LYS_REF_CON	Lysis_Ref_Con
Base 1	Life	MASS_XEK	Command to make a mass conservation test
Base 1	Life	MAX_ASSIMIL	Maximal assimilation rate
Base 1	Life	MAX_CHLN_RATIO	Maximal Chl:N ratio
Base 1	Life	MAX_NC_RATIO	Maximal N:C ratio
Base 1	Life	MAX_PC_RATIO	Maximal P:C ratio
Base 1	Life	MAX_SPEC_UP_@10C	Maximum specific uptake @ 10ºC
Base 1	Life	MAX_STORE_FILL	Maximal rate of storage filling
Base 1	Life	MIN_LYSIS	Minimal lysis rate
Base 1	Life	MIN_NC_RATIO	Minimal N:C ratio
Base 1	Life	MIN_PC_RATIO	Minimal P:C ratio
Base 1	Life	MIXOTROPHY	Hability to perform mixotrophy
Base 1	Life	MORT_DOM_SL_FRAC	DOC_SL_Frac
Base 1	Life	MORT_O2_DEP	Oxygen-dependent mortality rate
Base 1	Life	MORT_POM_FRAC	Fraction of mortality to POM
Base 1	Life	MORT_RATE	Temperature-independent mortality rate
Base 1	Life	NH4_Ks	PO4 uptake affinity
Base 1	Life	NIT_IN_COEF	Nitrification inhibition coefficient
Base 1	Life	NIT_O_N_CONV	Nitrification O:N consumption ratio
Base 1	Life	NITRIFRADLIM	Light radiation bellow which nitrification occurs
Base 1	Life	NITRIFRATE	Nitrification rate
Base 1	Life	NO3_Ks	NO3 uptake affinity
Base 1	Life	NUT_STRESS_TRESHOLD	Nutrient stress threshold (sedimentation)
Base 1	Life	O2_CARB_CONVERS	Oxygen to carbon conversion factor
Base 1	Life	O2_KS	Oxygen half saturation constant
Base 1	Life	O2_LOW_ASS_EFIC	Oxygen concentration bollow which ass efic is low
Base 1	Life	PHOTOINHIBITION	Photoinhibition
Base 1	Life	PO4_Ks	PO4 uptake affinity
Base 1	Life	POM_BAC_KS	Bacteria mediated POM Hydrolysis MM constant
Base 1	Life	POM_BAC_VMAX	Vmax for POM Hydrolysis
Base 1	Life	Q10_VALUE	Q10 value for temperature limitation
Base 1	Life	REDFIELD_NC	Redfield N:C ratio
Base 1	Life	REDFIELD_PC	Redfield P:C ratio
Base 1	Life	REDFIELD_SiC	Standard Si:C ratio
Base 1	Life	REF_TEMP	Reference temperature
Base 1	Life	REF_TEMP_Q10	Reference temperature for Q10 method
Base 1	Life	REL_EXCESS_SI	Release rate of excess silicate
Base 1	Life	RESP_BASAL	Basal respiration rate
Base 1	Life	RESP_FRAC_PROD	Respired fraction of production
Base 1	Life	REST_RESP_@10C	Rest respiration @ 10ºC
Base 1	Life	SED_MIN	Minimal sedimentation rate
Base 1	Life	SED_NUT_STRESS	Nutrient stress sedimentation rate
Base 1	Life	SEDIM_MIN	Minimal sedimentation rate
Base 1	Life	SEDIM_NUT_STRESS	Nutrient stress threshold (sedimentation)
Base 1	Life	SI_UPTAKE_KS	Silicate uptake Michaelis constant
Base 1	Life	SILICA_USE	Set Silica use by the producer
Base 1	Life	TEMP_LIM_METHOD	Temperature limitation method

Module LightExtinction

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	LightExtinction	COEF_PARSONS_PORTELA	Correct Default Coefficient for Parsons Portela SW Radiation parameterisation	Needs SW_EXTINCTION_TYPE: 4		0.04		Real
Base 1	LightExtinction	LW_EXTINCTION_COEF	Long-wave extinction coeficient			0.333
Base 1	LightExtinction	LW_EXTINCTION_COLUMN
Base 1	LightExtinction	LW_EXTINCTION_TYPE	The method used in light extinction estimate	1	Constant	1
				5	Ascii file
Base 1	LightExtinction	LW_PERCENTAGE				0.4
Base 1	LightExtinction	SW_EXTINCTION_COEF	Short-wave extinction coeficient			0.05		Real
Base 1	LightExtinction	SW_EXTINCTION_COLUMN
Base 1	LightExtinction	SW_EXTINCTION_TYPE	The method used in light extinction estimate	1	Constant	1
				2	Parsons Ocean
				3	Portela-Tagus Estuary
				4	Combined Parsons-Portela
				5	Ascii file
				6	Multiparameter
Base 1	LightExtinction	SW_KW	Short wave absorption coefficient
Base 1	LightExtinction	SW_LW_EXTINCTION_FILE
Base 1	LightExtinction	SW_PERCENTAGE				0.6

Module MacroAlgae

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	MacroAlgae	BEACHED_MORT_RATE	Beached drifting macroalgae mortality rate
Base 1	MacroAlgae	DEPLIM	Maximum SPM deposition flux allowed for macroalgae to grow
Base 1	MacroAlgae	DISSDON	fraction of dissolved organic material excreted by macroalgae
Base 1	MacroAlgae	DT	Time step compute macroalgae biogeochemical processes
Base 1	MacroAlgae	ENDREPC	Macroalgae endogenous respiration rate
Base 1	MacroAlgae	EROCRITSS	Critical shear stress for macroalgae detachment to occur
Base 1	MacroAlgae	EXCRCONS	Macroalgae excretion rate
Base 1	MacroAlgae	GRAZCONS	Grazing rate over macroalgae
Base 1	MacroAlgae	GROWMAX	macroalgae maximum growth rate
Base 1	MacroAlgae	MACROALGAE_MINCONC	Minimum residual value for macroalgae abundance
Base 1	MacroAlgae	MIN_OXYGEN	Minimum oxygen concentration for macroalgae growth
Base 1	MacroAlgae	MORTCON	Macroalgae mortality half saturation constant
Base 1	MacroAlgae	MORTMAX	Macroalgae natural mortality rate
Base 1	MacroAlgae	NITROGEN	Defines if the user wishes to compute the nitrogen cycle
Base 1	MacroAlgae	NSATCONS	nitrogen half-saturation constant for macroalgae
Base 1	MacroAlgae	PELAGIC_MODEL	Pelagic biogeochemical module coupled
Base 1	MacroAlgae	PHOSPHORUS	Defines if the user wishes to compute the phosphorus cycle
Base 1	MacroAlgae	PHOTOIN	macroalgae optimum radiation value
Base 1	MacroAlgae	PHOTORES	Macroalgae photorespiration rate
Base 1	MacroAlgae	PSATCONS	phosphorus half-saturation constant for macroalgae
Base 1	MacroAlgae	RATIONC	Macroalgae nitrogen/carbon ratio
Base 1	MacroAlgae	RATIOPC	Macroalgae phosphorus/carbon ratio
Base 1	MacroAlgae	SALT_EFFECT	Include salinity limitation on macroalgae growth
Base 1	MacroAlgae	SALTCRIT	Macroalgae critical salinity limit growth
Base 1	MacroAlgae	SALTMAX	Macroalgae maximum salinity for growth
Base 1	MacroAlgae	SALTMIN	Macroalgae minimum salinity for growth
Base 1	MacroAlgae	SALTOPT	Macroalgae optimum salinity for growth
Base 1	MacroAlgae	SOLEXCR	Fraction of soluble inorganic material excreted by macroalgae
Base 1	MacroAlgae	TCONST1	Constant to control temperature response curve shape
Base 1	MacroAlgae	TCONST2	Constant to control temperature response curve shape
Base 1	MacroAlgae	TCONST3	Constant to control temperature response curve shape
Base 1	MacroAlgae	TCONST4	Constant to control temperature response curve shape
Base 1	MacroAlgae	TMIN	Macroalgae minimum temperature for growth
Base 1	MacroAlgae	TOPTMAX	Macroalgae optimum maximum temperature for growth
Base 1	MacroAlgae	TOPTMIN	Macroalgae optimum minimum temperature for growth

Module Profile

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	Profile	DT_OUTPUT_TIME	Time step to perform profile outputs in HDF5
Base 1	Profile	LOCALIZATION_I	Grid cell index I where to perform profile output
Base 1	Profile	LOCALIZATION_J	Grid cell index J where to perform profile output
Base 1	Profile	NAME	Name of profile output

Module SedimentQuality

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	SedimentQuality	Acoef	Coefficient for labile OM decay rate
Base 1	SedimentQuality	Acoef	Acoef for Heterotrophs decay rate
Base 1	SedimentQuality	Acoef	Acoef for Autotrophs C specific decay (death) Rate
Base 1	SedimentQuality	Acoef	Acoef for the Anaerobic C specific decay (death) Rate
Base 1	SedimentQuality	Acoef	Calculates the AmmoniaToNitrate (nitrification) specific Rate
Base 1	SedimentQuality	Acoef	A coef for the AmmoniaImobilization specific Rate
Base 1	SedimentQuality	Acoef	Acoef for for the NitrateToNgas specific Rate (denitrification)
Base 1	SedimentQuality	Acoef	Acoef for the NitrateImobilization specific Rate
Base 1	SedimentQuality	ActivationE	Activation Energy for labil organic mater carbon decay rate
Base 1	SedimentQuality	ActivationE	Coeficient for refractory OM decay rate
Base 1	SedimentQuality	ActivationE	AE for Heterotrophs decay rate
Base 1	SedimentQuality	ActivationE	AE activation energy for the Autotrophs C specific decay (death) Rate
Base 1	SedimentQuality	ActivationE	AE for the Anaerobic C specific decay (death) Rate
Base 1	SedimentQuality	ActivationE	Calculates the AmmoniaToNitrate (nitrification) specific Rate.
Base 1	SedimentQuality	ActivationE	Calculates the AmmoniaImobilization specific Rate
Base 1	SedimentQuality	ActivationE	Activation Energy for the NitrateToNgas specific Rate
Base 1	SedimentQuality	ActivationE	Activation Energy for the NitrateImobilization specific Rate
Base 1	SedimentQuality	CARBON	Determines if calculations of carbon related properties is performed
Base 1	SedimentQuality	CARBON_EFICIENCY	Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2
Base 1	SedimentQuality	CARBON_EFICIENCY	Carbon assimilation efficiency for Anaerobic population
Base 1	SedimentQuality	CN_RATIO	CN ratio of Hetrotrophs biomass
Base 1	SedimentQuality	CN_RATIO	CN ratio of Autotrophs biomass
Base 1	SedimentQuality	CN_RATIO	CN ratio of anaerobic population.
Base 1	SedimentQuality	DTSECONDS	Time step for sediment quality calculation
Base 1	SedimentQuality	EXPLICIT	Sistem is solved with explicit formulation
Base 1	SedimentQuality	MINIMUM_POPULATION	Minimum population for death rate to occur (below value no death)
Base 1	SedimentQuality	MINIMUM_POPULATION	Minimum population for death rated to take place
Base 1	SedimentQuality	MINIMUM_POPULATION	Minimum population for death rate top occur
Base 1	SedimentQuality	NITROGEN	Option to activate or deactivate the calculation of Nitrogen related properties
Base 1	SedimentQuality	NITROGEN_EFICIENCY	NITROGEN EFICIENCY for autotrophic population
Base 1	SedimentQuality	NITROGEN_EFICIENCY	Nitrogen assimilation efficiency of anaerobic population
Base 1	SedimentQuality	POPULATION_CARBON_RATIO	Convertion form carbon concentration to population for Anaerobic populations
Base 1	SedimentQuality	POPULATION_CARBON_RATIO	COnversion form Carbon mass of hetrotrphs to population nºs
Base 1	SedimentQuality	POPULATION_CARBON_RATIO	Convertion form carbon biomass to nº of individual cells
Base 1	SedimentQuality	Temperature	Temperature for Autotrophs C specific decay (death) Rate
Base 1	SedimentQuality	Temperature	Optimum temperature for the Anaerobic C specific decay (death) Rate
Base 1	SedimentQuality	Temperature	Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate
Base 1	SedimentQuality	Temperature	Optimum temperature for the AmmoniaImobilization specific Rate
Base 1	SedimentQuality	Temperature	OPtimum temperature for the NitrateToNgas specific Rate
Base 1	SedimentQuality	Temperature	Optimum temperature for the NitrateImobilization specific Rate
Base 1	SedimentQuality	Temperature	Optimum temperature for decay rate
Base 1	SedimentQuality	Temperature	Optimum Temperature for rate

Module WaterQuality

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 1	WaterQuality	AFG	Growth coefficient dependent of fishfood availability HalfSaturationConstant
Base 1	WaterQuality	AGE	Water "Age" : Lagrangean property
Base 1	WaterQuality	ASS_EFIC	Phytoplankton: Assimilation efficiency of flagellates by the zooplankton
Base 1	WaterQuality	ATG	Growth coefficient dependent of temperature
Base 1	WaterQuality	ATZ	Death coefficient dependent of temperature
Base 1	WaterQuality	AWG	Growth coefficient dependent of larvae weight
Base 1	WaterQuality	AWZ	Death coefficient dependent of larvae weight
Base 1	WaterQuality	BACINGCIL	Ciliates: Proportion of bacteria in microzooplankton ingestion
Base 1	WaterQuality	BACMINSUB	Bacteria: Minimum substract concentration for bacteria uptake
Base 1	WaterQuality	BACNCONS	Bacteria: Half-saturation constant for bacteria nutrient uptake
Base 1	WaterQuality	BACTERIA	Bacteria: Processes Simulation
Base 1	WaterQuality	BACTRATIOOC	Oxygen: Bacteria Oxygen/Carbon Ratio
Base 1	WaterQuality	BARESPCO	Bacteria: Excretion Rate
Base 1	WaterQuality	BMAXUPTA	Bacteria: Maximum nutrient uptake at the reference temperature
Base 1	WaterQuality	BOD	BOD: Processes Simulation
Base 1	WaterQuality	BODCOEF	BOD: BOD oxidation coefficient
Base 1	WaterQuality	BODOSSAT	BOD: Oxygen limitation half-saturation constant
Base 1	WaterQuality	BODREF	BOD: BOD oxidation at the reference temperature
Base 1	WaterQuality	BRATIONC	Bacteria: Nitrogen/Carbon Ratio
Base 1	WaterQuality	BTG	Growth coefficient dependent of temperature
Base 1	WaterQuality	BTZ	Death coefficient dependent of temperature
Base 1	WaterQuality	BWG	Growth coefficient dependent of larvae weight
Base 1	WaterQuality	BWZ	Death coefficient dependent of larvae weight
Base 1	WaterQuality	CEXCCONS	Ciliates: Excretion constant curve
Base 1	WaterQuality	CEXCFAC	Ciliates: Excretion factor
Base 1	WaterQuality	CILBACASS	Ciliates: Assimilation coefficient of bacteria by microzooplankton
Base 1	WaterQuality	CILCORATIO	Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
Base 1	WaterQuality	CILEFFCAPBA	Ciliates: Capture efficiency of bacteria
Base 1	WaterQuality	CILEFFCAPPHY	Ciliates: Capture efficiency of phytoplankton
Base 1	WaterQuality	CILIATE	Ciliates: Processes Simulation
Base 1	WaterQuality	CILPHYASS	Ciliates: Assimilation coefficient of flagellates by microzooplankton
Base 1	WaterQuality	CILPREYMIN	Ciliates: Minimum prey concentration for grazing
Base 1	WaterQuality	CILRATINGZOO	Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
Base 1	WaterQuality	CINGMAX	Ciliates: Maximum ingestion rate
Base 1	WaterQuality	CRATIONC	Ciliates: Nitrogen/Carbon Ratio
Base 1	WaterQuality	CRATIOPC	Ciliates: Phosphorus/Carbon Ratio
Base 1	WaterQuality	CREFRESP	Ciliates: Carbon consumption rate by respiration
Base 1	WaterQuality	DENITREF	Nitrogen: Reference denitirfication rate
Base 1	WaterQuality	DENSATCO	Nitrogen: Denitrification half-saturation constant
Base 1	WaterQuality	DIASS_EFIC	Diatoms: Assimilation efficiency of diatoms by zooplankton
Base 1	WaterQuality	DIATOMS	Diatoms: Processes Simulation
Base 1	WaterQuality	DIDISSDON	Diatoms: Fraction of dissolved organic material in excretions
Base 1	WaterQuality	DIEXCRCONS	Diatoms: Excretion constant
Base 1	WaterQuality	DIFENDREPC	Diatoms: Endogenous respiration constant
Base 1	WaterQuality	DIGRAZMIN	Zooplankton: Minimum diatoms concentration for grazing
Base 1	WaterQuality	DIGROWMAX	Diatoms: Maximum gross growth rate
Base 1	WaterQuality	DIMORTCON	Diatoms: Mortality half-saturation Constant
Base 1	WaterQuality	DIMORTMAX	Diatoms: Maximum Mortality Rate
Base 1	WaterQuality	DINSATCONS	Diatoms: Nitrogen half-saturation constant
Base 1	WaterQuality	DIPHOTOIN	Diatoms: Optimum light intensity for photosynthesis
Base 1	WaterQuality	DIPHOTORES	Diatoms: Fraction of actual photosynthesis oxidized by photorespiration
Base 1	WaterQuality	DIPSATCONS	Diatoms: Phosphorus half-saturation constant
Base 1	WaterQuality	DIRATINGZOO	Zooplankton: Proportion of diatoms in mesozooplankton ingestion
Base 1	WaterQuality	DIRATIONC	Diatoms: Nitrogen/Carbon Ratio
Base 1	WaterQuality	DIRATIOPC	Diatoms: Phosphorus/Carbon Ratio
Base 1	WaterQuality	DIRATIOSIC	Diatoms: Silica/Carbon Ratio
Base 1	WaterQuality	DISISATCONS	Diatoms: Silicate half-saturation constant
Base 1	WaterQuality	DISOLEXCR	Diatoms: Fraction of soluble inorganic material in excretions
Base 1	WaterQuality	DITCONST1	Diatoms: Constant to control temperature response curve shape
Base 1	WaterQuality	DITCONST2	Diatoms: Constant to control temperature response curve shape
Base 1	WaterQuality	DITCONST3	Diatoms: Constant to control temperature response curve shape
Base 1	WaterQuality	DITCONST4	Diatoms: Constant to control temperature response curve shape
Base 1	WaterQuality	DITMAX	Diatoms: Maximum temperature tolerable for growth
Base 1	WaterQuality	DITMIN	Diatoms: Minimum tolerable temperature for growth
Base 1	WaterQuality	DITOPTMAX	Diatoms: Maximum temperature of the optimal interval for photosynthesis
Base 1	WaterQuality	DITOPTMIN	Diatoms: Minimum temperature of the optimal interval for photosynthesis
Base 1	WaterQuality	DIZOASS	Zooplankton: Assimilation coefficient of diatoms by mesozooplankton
Base 1	WaterQuality	DIZOOEFFCAP	Zooplankton: Capture efficiency of diatoms
Base 1	WaterQuality	DTSECONDS	Time step for water quality processes calculation
Base 1	WaterQuality	EXCRCONS	Phytoplankton: Excretion constant
Base 1	WaterQuality	EXPLICIT	Explicit Method
Base 1	WaterQuality	FDISSDON	Phytoplankton: Fraction of dissolved organic material in excretions
Base 1	WaterQuality	FENDREPC	Phytoplankton: Endogenous respiration constant
Base 1	WaterQuality	FINAL_AGE	Larvae Final Age
Base 1	WaterQuality	FINAL_LENGTH	Larvae Final Length
Base 1	WaterQuality	FISHFOOD_REF	Reference food availability
Base 1	WaterQuality	FMORTCON	Phytoplankton: Mortality half saturation rate
Base 1	WaterQuality	FMORTMAX	Phytoplankton: Maximum mortality
Base 1	WaterQuality	FRATIONC	Phytoplankton: Nitrogen/Carbon Ratio
Base 1	WaterQuality	FRATIOPC	Phytoplankton: Phosphorus/Carbon ratio
Base 1	WaterQuality	FREGSATC	Nutrients: Nutrient regeneration half-saturation rate
Base 1	WaterQuality	FSOLEXCR	Phytoplankton: Fraction of soluble inorganic in excretions
Base 1	WaterQuality	GRAZBACMIN	Ciliates: Minimum flagellates concentration for grazing
Base 1	WaterQuality	GRAZCILMIN	Zooplankton: Minimum microzooplankton concentration for grazing
Base 1	WaterQuality	GRAZFITOMIN	Zooplankton: Minimum fagellates concentration for grazing
Base 1	WaterQuality	GROWMAXF	Phytoplankton: Maximum growth rate
Base 1	WaterQuality	GROWMAXZ	Zooplankton: Maximum zooplankton growth rate
Base 1	WaterQuality	IMPLICIT	Implicit Method Calculation
Base 1	WaterQuality	INGCONSC	Ciliates: Half-saturation constant for grazing
Base 1	WaterQuality	INGCONSZ	Zooplankton: Half-saturation constant for predation
Base 1	WaterQuality	INIT_AGE	Larvae Inital Age
Base 1	WaterQuality	INIT_LENGTH	Larvae Inital Length
Base 1	WaterQuality	INTER_AGE	Larvae Intermediate Age
Base 1	WaterQuality	INTER_LENGTH	Larvae Intermediate Length
Base 1	WaterQuality	IVLEVCON	Zooplankton: Ivlev grazing constant
Base 1	WaterQuality	LARVAE	Larvae Processes Simulation
Base 1	WaterQuality	LDENSITY	Larvae density factor
Base 1	WaterQuality	LSHAPE	Larvae shape factor
Base 1	WaterQuality	MAXMORTCI	Ciliates: Maximum Mortality Rate
Base 1	WaterQuality	MAXMORTZ	Zooplankton: Maximum mortality rate
Base 1	WaterQuality	MINMORTCI	Ciliates: Minimum Mortality rate
Base 1	WaterQuality	MINMORTZ	Zooplankton: Minimum mortality rate
Base 1	WaterQuality	MINOXYGEN	Oxygen: Minimum oxygen concentration allowed
Base 1	WaterQuality	MORTCICOEF	Ciliates: Mortality coefficient
Base 1	WaterQuality	MORTZCOEF	Zooplankton: Shape factor for the mortality curve of zooplankton
Base 1	WaterQuality	NATMORB	Bacteria: Natural mortality rate
Base 1	WaterQuality	NITONRAT	Oxygen: Oxygen/Carbon in Nitrate
Base 1	WaterQuality	NITRIREF	Nitrogen: Reference nitrification rate
Base 1	WaterQuality	NITROGEN	Nitrogen: Biogeochemical Processes Simulation
Base 1	WaterQuality	NITSATCO	Nitrogen: Nitrification half-saturation constant
Base 1	WaterQuality	NMINENR	Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)
Base 1	WaterQuality	NMINR	Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)
Base 1	WaterQuality	NOPCOEF	Nitrogen: PON decomposition temperature coefficient
Base 1	WaterQuality	NOPREF	Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)
Base 1	WaterQuality	NPHASES	Number of larvae phases (valid values are 1 and 2)
Base 1	WaterQuality	NSATCONS	Phytoplankton: Nitrogen half-saturation constant
Base 1	WaterQuality	OCRATIO	Oxygen: Oxygen/Carbon in CO2
Base 1	WaterQuality	OMRATIONC	Oxygen: Organic Matter Nitrogen/Carbon Ratio
Base 1	WaterQuality	OMRATIOPC	Oxygen: Organic Matter Phosphorus/Carbon Ratio
Base 1	WaterQuality	PHDECOMP	Nitrogen: Fraction of PON available for mineralization
Base 1	WaterQuality	PHOSOPRAT	Oxygen: Oxygen/Carbon in Phosphate
Base 1	WaterQuality	PHOSPHOR	Phosphorus: Biogeochemical Processes Simulation
Base 1	WaterQuality	PHOTOIN	Phytoplankton: Optimum light intensity for photosyntesis
Base 1	WaterQuality	PHOTORES	Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration
Base 1	WaterQuality	PHOTOSOC	Oxygen: Photosynthesis Oxygen/Carbon ratio
Base 1	WaterQuality	PHYINGCIL	Ciliates: Proportion of flagellates in microzooplankton ingestion
Base 1	WaterQuality	PHYRATING	Zooplankton: proportion of phytoplankton in mesozooplankton ingestion
Base 1	WaterQuality	PHYTO	Phytoplankton: Processes Simulation
Base 1	WaterQuality	PLANK_OC_RAT	Oxygen: Oxygen/Carbon ratio in plankton respiration
Base 1	WaterQuality	PMINNR	Phosphorus: DOPnr mineralization rate at reference temperature
Base 1	WaterQuality	PMINNRCOEF	Phosphorus: DOPnr mineralization temperature coefficient
Base 1	WaterQuality	PMINR	Phosphorus: DOPre mineralization rate at reference tempearture
Base 1	WaterQuality	PMINRCOEF	Phosphorus: DOPre mineralization temperature coefficient
Base 1	WaterQuality	PPARTMIN	Phosphorus: POP decomposition rate at reference temperature
Base 1	WaterQuality	PSATCONS	Phytoplankton: Phosphorus half-saturation constant
Base 1	WaterQuality	SEMIIMP	Semi-implicit Method Calculation
Base 1	WaterQuality	SIDISSTCOEF	Silica: Biogenic silica dissolution temperature coefficient
Base 1	WaterQuality	SIKDISS	Silica: Biogenic silica dissolution rate in the water column at the reference temperature
Base 1	WaterQuality	SILICA	Silica: Processes Simulation
Base 1	WaterQuality	TBCONST1	Bacteria: Constant to control temperature response curve shape
Base 1	WaterQuality	TBCONST2	Bacteria: Constant to control temperature response curve shape
Base 1	WaterQuality	TBCONST3	Bacteria: Constant to control temperature response curve shape
Base 1	WaterQuality	TBCONST4	Bacteria: Constant to control temperature response curve shape
Base 1	WaterQuality	TBMAX	Bacteria: Maximum temperature tolerable temperature for growth
Base 1	WaterQuality	TBMIN	Bacteria: Minimum temperature tolerable for growth
Base 1	WaterQuality	TDENCOEF	Nitrogen: Denitrification Temperature Coefficient
Base 1	WaterQuality	TEMPERATURE_REF	Larvae Reference temperature
Base 1	WaterQuality	TFCONST1	Phytoplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TFCONST2	Phytoplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TFCONST3	Phytoplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TFCONST4	Phytoplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TFMAX	Phytoplankton: Maximum temperature tolerable for growth
Base 1	WaterQuality	TFMIN	Phytoplankton: Minimum temperature tolerable for growth
Base 1	WaterQuality	TMINNR	Nitrogen: DONnr mineralization temperature coefficient
Base 1	WaterQuality	TMINR	Nitrogen: DONr mineralization temperature coefficient
Base 1	WaterQuality	TNITCOEF	Nitrogen: Nitrification temperature coefficient
Base 1	WaterQuality	TOPTBMAX	Bacteria: Maximum temperature of the optimal interval for growth
Base 1	WaterQuality	TOPTBMIN	Bacteria: Minimum temperature of the optimal interval for growth
Base 1	WaterQuality	TOPTFMAX	Phytoplankton: Maximum temperature of the optimal interval for photosyntesis
Base 1	WaterQuality	TOPTFMIN	Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis
Base 1	WaterQuality	TOPTZMAX	Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth
Base 1	WaterQuality	TOPTZMIN	Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth
Base 1	WaterQuality	TPPARTMINCOEF	Phosphorus: POP decomposition temperature coefficient
Base 1	WaterQuality	TZCONST1	Zooplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TZCONST2	Zooplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TZCONST3	Zooplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TZCONST4	Zooplankton: Constant to control temperature response curve shape
Base 1	WaterQuality	TZMAX	Zooplankton: Maximum temperature tolerable for growth
Base 1	WaterQuality	TZMIN	Zooplankton: Minimum temperature tolerable for growth
Base 1	WaterQuality	ZDISSDON	Zooplankton: Dissolved organic fraction in excretions
Base 1	WaterQuality	ZEXCCONS	Zooplankton: Excretion constant for zooplankton
Base 1	WaterQuality	ZEXCFAC	Zooplankton: Excretion Factor
Base 1	WaterQuality	ZINGMAX	Zooplankton: Maximun ingestion rate
Base 1	WaterQuality	ZOCILASS	Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton
Base 1	WaterQuality	ZOCRATIO	Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
Base 1	WaterQuality	ZOO	Zooplankton: Processes Simulation
Base 1	WaterQuality	ZOOEFFCAPCIL	Zooplankton: Capture efficiency of microzoolankton
Base 1	WaterQuality	ZOOEFFCAPHY	Zooplankton: Capture efficiency of phytoplankton
Base 1	WaterQuality	ZOOPREYMIN	Zooplankton: Minimum prey concentration for grazing
Base 1	WaterQuality	ZOPHYASS	Zooplankton: Assimilation coefficient of flagellates by mesozooplankton
Base 1	WaterQuality	ZPREDMOR	Zooplankton: Predatory mortality rate (predation by higher trophic levels)
Base 1	WaterQuality	ZRATIONC	Zooplankton: Nitrogen/Carbon Ratio
Base 1	WaterQuality	ZRATIOPC	Zooplankton: Phosphorus/Carbon ratio
Base 1	WaterQuality	ZREFRESP	Zooplankton: Carbon consumption rate by respiration
Base 1	WaterQuality	ZSOLEXCR	Zooplankton: Soluble inorganic fraction in excretions

MOHID Base 2

Module Atmosphere

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	Atmosphere	BOX_TIME_SERIE	Output of property values in time series files, integrated in boxes.
Base 2	Atmosphere	DATA_COLUMN	Number of column in the time series file.
Base 2	Atmosphere	FILENAME	Path to the file with the time series.
Base 2	Atmosphere	IRRIGATION	Property added by irrigation
Base 2	Atmosphere	NO_INTERPOLATION	This keyword is deprecated. Use accumulated values use instead.
Base 2	Atmosphere	ACCUMULATE_VALUES	Use mm with ACCUMULATE_VALUES = 1.
Base 2	Atmosphere	USE_ORIGINAL_VALUES	use a FLUX (ex. mm/hour) with USE_ORIGINAL_VALUES = 1.
Base 2	Atmosphere	OUTPUT_HDF	Output of property values in HDF files.
Base 2	Atmosphere	OUTPUT_TIME	Output instants of HDF5 file.
Base 2	Atmosphere	RADIATION_METHOD	Method to compute solar radiation	1	Climatologic solar radiation algorithm
				2	CEQUALW2 solar radiation algorithm
Base 2	Atmosphere	RANDOM_COMPONENT	Random component of property.
Base 2	Atmosphere	STATISTICS	Choose to compute the statistics of this property
Base 2	Atmosphere	STATISTICS_FILE	Path to the file with the statistics definition for this property.
Base 2	Atmosphere	TIME_SERIE	Output of property values in time series files.
Base 2	Atmosphere	TIME_SERIE_LOCATION	Path to the file that has the time series location characteristics.

Module Geometry

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	Geometry	DISPLACEMENT_LIMIT	the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1)
Base 2	Geometry	DOMAINDEPTH	The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
Base 2	Geometry	EMPTY_TOP_LAYERS	Number of empty layers counting from top
Base 2	Geometry	EQUIDISTANT	Thickness of layers admitting that all the layers have the same thickness
Base 2	Geometry	FACES_OPTION	Methodology to compute areas between cells	2	Average thickness of the adjacent water columns (advised option)
				3	Minimum thickness of the adjacent water columns (advanced user option)
Base 2	Geometry	GRIDMOVEMENTDUMP
Base 2	Geometry	ID	Domain ID
Base 2	Geometry	IMPER_COEF_U	U Coefficient to compute faces areas in U points
Base 2	Geometry	IMPER_COEF_V	V Coefficient to compute faces areas in V points
Base 2	Geometry	IMPER_COEFX_U	X_U Coefficient to compute faces areas in U points
Base 2	Geometry	IMPER_COEFX_V	X_V Coefficient to compute faces areas in V points
Base 2	Geometry	IMPERMEABILITY	Consider impermeable cell faces
Base 2	Geometry	INITIALIZATION_METHOD	Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity	CARTESIAN	Cartesian type coordinates
				SIGMA	Sigma type coordinates
Base 2	Geometry	LAYERS	Number of layers
Base 2	Geometry	LAYERTHICKNESS	If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers
Base 2	Geometry	MIN_TOP_THICKNESS	minimum thickness of collapsing cells of the Harmonic domain
Base 2	Geometry	MINEVOLVELAYERTHICKNESS	Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1)
Base 2	Geometry	MINIMUMDEPTH	water column thickness below which the cell is considered uncovered
Base 2	Geometry	MININITIALLAYERTHICKNESS	minimal thickness of the bottom cells
Base 2	Geometry	REMOVE_LAND_BOTTOM_LAYERS	Remove bottom layers with no water cells
Base 2	Geometry	TOLERANCEDEPTH	Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
Base 2	Geometry	TOTALTHICKNESS	Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
Base 2	Geometry	TYPE	Type of vertical coordinate of the domain	CARTESIAN	Cartesian coordinates
				CARTESIANTOP	A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
				FIXSEDIMENT	Fixed Sediment coordinates
				FIXSPACING	Fixed Spacing coordinates - used to study flows close to the bottom
				HARMONIC	Harmonic coordinates - the horizontal faces close to the surface expand and collapse depending on the variation of the surface elevation. This coordinate was implemented in the geometry module to simulate reservoirs.
				LAGRANGIAN	Lagrangian coordinates - moves the upper and lower faces with the vertical flow velocity.
				SIGMA	Sigma coordinates
				SIGMATOP	A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below

Module BoxDif

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	BoxDif	OUTPUT_FILE	Output file location
Base 2	BoxDif	TYPE	Coordinate Type
Base 2	BoxDif	WRITE_BOXES	Option to write boxes output file

Module FillMatrix

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	FillMatrix	BOXES_VALUES	Sequence of values for each box starting from box 1.
Base 2	FillMatrix	CoefA	Coeficient to compute analytical profile.
Base 2	FillMatrix	CoefB	Coeficient to compute analytical profile
Base 2	FillMatrix	DATA_COLUMN	DATA_COLUMN is the number of the relevant column in the time series file.
Base 2	FillMatrix	DEFAULTVALUE	Default value when INITIALIZATION_METHOD is used.
Base 2	FillMatrix	DEPTH_PROFILE	Sequence of depth values. Used with PROFILE option.
Base 2	FillMatrix	FILE_IN_TIME	Defines the kind of reading operation performed in time to modify the field	NONE	Matrix is not modified from reading values from file
				HDF	Reads data from an HDF5 file. There are restrictions regarding file format: 1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid. 2) In the Grid folder it is required to have the data sets: "Bathymetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints". 3) The name of the fields must be recognised by MOHID (see list of supported names) 4) Time data set must contain as many instants as the field data sets 5) Time data set must also contain dates for a period of the same or greater duration of the simulation.
				PROFILE_TIME_SERIE	Read solution from various profiles in time
				TIMESERIE	The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN.
Base 2	FillMatrix	FILENAME	Path to the file containing imposed data
Base 2	FillMatrix	FILENAME_DEFAULT	Path to the file containing data for initialization of default value.
Base 2	FillMatrix	HDF_FIELD_NAME	HDF5 group name
Base 2	FillMatrix	INITIALIZATION_DEFAULT	Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
Base 2	FillMatrix	INITIALIZATION_METHOD	Initial condition data input method.	ANALYTIC PROFILE	Initialization made by an analytical vertical profile.
				ASCII_FILE	Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed. If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.
				BOXES	Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
				CONSTANT	Constant value for all domain.
				HDF	Reads initial field from a HDF file. Field is interpolated in time if necessary.
				LAYERS	Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword.
				PROFILE	Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
				PROFILE_TIMESERIE	Read initial field from various profiles.
				TIMESERIE	Reads initial values from a time series file. If necessary the initial value is interpolated in time.
Base 2	FillMatrix	LAYERS_VALUES	Sequence of values for each layer starting from the bottom layer.
Base 2	FillMatrix	MULTIPLYING_FACTOR	Data field multiplying factor. HDF5 only.
Base 2	FillMatrix	NDEPTHS	Number of values that the define the profile.
Base 2	FillMatrix	PROFILE_TYPE	Type of analytical profile	EXPONENTIAL	Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
				LINEAR	Profile has a linear format, given by the following expression: Value = DefaultValue + CoefA * CellDepth / CoefB
Base 2	FillMatrix	PROFILE_VALUES	Sequence of values that constitute the profile.

Module Geometry

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	Geometry	DISPLACEMENT_LIMIT	the maximum displacement that the model allow cell faces to move vertically in meters
Base 2	Geometry	DOMAINDEPTH	The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
Base 2	Geometry	EMPTY_TOP_LAYERS	Number of empty layers counting from top
Base 2	Geometry	EQUIDISTANT	Thickness of layers admitting that all the layers have the same thickness
Base 2	Geometry	FACES_OPTION	Methodology to compute areas between cells	2	Average thickness of the adjacent water columns (advised option)
				3	Minimum thickness of the adjacent water columns (advanced user option)
Base 2	Geometry	GRIDMOVEMENTDUMP
Base 2	Geometry	ID	Domain ID
Base 2	Geometry	IMPER_COEF_U	U Coefficient to compute faces areas in U points
Base 2	Geometry	IMPER_COEF_V	V Coefficient to compute faces areas in V points
Base 2	Geometry	IMPER_COEFX_U	X_U Coefficient to compute faces areas in U points
Base 2	Geometry	IMPER_COEFX_V	X_V Coefficient to compute faces areas in V points
Base 2	Geometry	IMPERMEABILITY	Consider impermeable cell faces
Base 2	Geometry	INITIALIZATION_METHOD	Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity	CARTESIAN	Cartesian type coordinates
				SIGMA	Sigma type coordinates
Base 2	Geometry	LAGRANGIAN	Indicates that the defined domain can evolve in size as a lagrangian domain
Base 2	Geometry	LAYERS	Number of layers
Base 2	Geometry	LAYERTHICKNESS	If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers
Base 2	Geometry	MIN_TOP_THICKNESS	minimum thickness of colapsing cells of the Harmonic domain
Base 2	Geometry	MINEVOLVELAYERTHICKNESS	coeficient which indicates how much a Lagrangian layer
Base 2	Geometry	MINIMUMDEPTH	water column thickness below which the cell is considered uncovered
Base 2	Geometry	MININITIALLAYERTHICKNESS	minimal thickness of the bottom cells
Base 2	Geometry	TOLERANCEDEPTH	Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
Base 2	Geometry	TOTALTHICKNESS	Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
Base 2	Geometry	TYPE	Type of vertical coordinate of the domain	CARTESIAN	Cartesian coordinates
				CARTESIANTOP	A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
				FIXSEDIMENT	Fixed Sediment coordinates
				FIXSPACING	Fixed Spacing coordinates - used to study flows close to the bottom
				HARMONIC	Harmonic coordinates - the horizontal faces close to the surface expand and collapse depending on the variation of the surface elevation. This coordinate was implemented in the geometry module to simulate reservoirs.
				LAGRANGIAN	Lagrangian coordinates - moves the upper and lower faces with the vertical flow velocity.
				SIGMA	Sigma coordinates
				SIGMATOP	A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below

Module GridData

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	GridData	EVOLUTION	Gets if the bathymetry can change in time
Base 2	GridData	EVOLUTION_FILE	Path to file that describes the time evolution.
Base 2	GridData	FILL_VALUE	Default value for points with no data
Base 2	GridData	PROPERTY_NAME	Name of the property that will change in time
Base 2	GridData	TYPE_ZUV	Matrix Types (Centered in Z, U or V)

Module HorizontalGrid

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	HorizontalGrid	CONSTANT_SPACING_X	Check if the spacing in X is constant
Base 2	HorizontalGrid	CONSTANT_SPACING_Y	Check if constant Spacing in y is used
Base 2	HorizontalGrid	COORD_TIP	Coordinate type of grid
Base 2	HorizontalGrid	DX	Grid spacing dx
Base 2	HorizontalGrid	DY	Gets DY spacing
Base 2	HorizontalGrid	GRID_ANGLE	Grid angle with north
Base 2	HorizontalGrid	ILB_IUB	minimum and maximum i in grid
Base 2	HorizontalGrid	JLB_JUB	minimum and maximum J in grid
Base 2	HorizontalGrid	LATITUDE	Latitude of grid
Base 2	HorizontalGrid	LONGITUDE	Longitude of grid
Base 2	HorizontalGrid	ORIGIN	X and Y origin of grid
Base 2	HorizontalGrid	ZONE	UTM zone of coordinate

Module Interpolation

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	Interpolation	EXTRAPOLATE_2D
Base 2	Interpolation	EXTRAPOLATE_PROFILE	Check if the user wants to extrapolate in the vertical
Base 2	Interpolation	IWD_N	Coefficient use in the inverse weight interpolation
Base 2	Interpolation	KERNEL_TYPE	Type of kernel used in the convolution interpolations	Exponential
Base 2	Interpolation	KERNEL_TYPE	Type of kernel used in the convolution interpolations	Gaussian
Base 2	Interpolation	MAX_DISTANCE	Max distance for points to be consider in the inverse weight interpolation
Base 2	Interpolation	MAX_ITERATIONS	Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.
Base 2	Interpolation	METHODOLOGY	The methodology used in the interpolation process	1	Conservative convolution
				2	NonConservative convolution
				3	Triangulation
				4	Bilinear
				5	Spline 2D
				6	Inverse weight
Base 2	Interpolation	N_DIM	The number of dimensions of the field to interpolate
Base 2	Interpolation	N_GROUPS	Number of groups generated for each dimension in the data-oriented convolution.
Base 2	Interpolation	NC_TYPE	Checks what class of NonConservative convolution process to use	1	User defined kernel for the NonConservative convolution
				2	Smoothes the field using the PHI value
				3	Data
Base 2	Interpolation	PHI	Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
Base 2	Interpolation	POLI_DEGREE_VERT	The order of the polynomial use to interpolate in the vertical
Base 2	Interpolation	SAMPLE_SIZE	Number of observations needed for the logistic regression in the data-oriented convolution.
Base 2	Interpolation	TYPE_ZUV	Where points are defined in the cell (Z - center; U - Face U; V : Face V)

Module Statistic

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Base 2	Statistic	DAILY_STATISTIC	Performs daily integration of statistic values
Base 2	Statistic	GEOMETRIC_MEAN	Performs geometric mean calculation for non negative parameters
Base 2	Statistic	GLOBAL_STATISTIC	Performs statistic calculation of every timestep
Base 2	Statistic	LAYER_DEFINITION	Layer definition
Base 2	Statistic	MAX_DEPTH	Max depth of layer
Base 2	Statistic	MAX_LAYER	Max layer k index
Base 2	Statistic	METHOD_STATISTIC	Way to perform the statistics (full matrix, layers, etc)
Base 2	Statistic	MIN_DEPTH	Minimum depth of layer
Base 2	Statistic	MIN_LAYER	Layer lower index start
Base 2	Statistic	MONTHLY_STATISTIC	Performs monthly integration of statistic values
Base 2	Statistic	PERCENTILE

MOHID Land

Module Runoff

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Runoff	ADJUST_SLOPE	Slope correction	0/1	Inactive/Active	1		Boolean
Land	Runoff	ADVECTION	Connect/disconnect advection	0/1	Inactive/Active	1		Boolean
Land	Runoff	ALLOW_BOUNDARY_INFLOW	Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall	0/1	Inactive/Active	0		Boolean
Land	Runoff	BOUNDARY_VALUE	Imposed boundary value		Needed if IMPOSE_BOUNDARY_VALUE : 1		m	Real
Land	Runoff	DT_FACTOR	Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise)			1.25		Real
Land	Runoff	DT_SPLIT_FACTOR	Factor to predict next number of iteration			2.0		Real
Land	Runoff	DYNAMIC_ADJUST_MANNING		0/1	Inactive/Active	0		Boolean
Land	Runoff	HYDRODYNAMIC_APROX	The overland flow routing method.	1	Kinematic Wave	2		Integer
				2	Diffusion Wave
				3	Dynamic Wave
Land	Runoff	HYDRAULIC_RADIUS_MARGINS		0/1	Inactive/Active	1		Boolean
Land	Runoff	IMPOSE_BOUNDARY_VALUE	Connect/disconnect imposing boundary value	0/1	Inactive/Active	0		Boolean
Land	Runoff	IMPOSE_MAX_VELOCITY		0/1	Inactive/Active	0		Boolean
Land	Runoff	LIMIT_DT_COURANT	Connect/disconnect limitation of dt by courant number	0/1	Inactive/Active	0		Boolean
Land	Runoff	MAX_COURANT	Maximum value for Courant number		Needed if LIMIT_DT_COURANT : 1	1.0		Real
Land	Runoff	MAX_ITERATIONS	Maximum number of internal iterations allowed for the module			1024		Integer
Land	Runoff	MAX_VELOCITY			Needed if IMPOSE_MAX_VELOCITY : 1	0.1		Real
Land	Runoff	MIN_ITERATIONS	Minimum number of internal iteration to start asking for a lower global dt			1		Integer
Land	Runoff	MIN_WATER_COLUMN	Minimum water column for overland flow			0.001	m	Real
Land	Runoff	MIN_WATER_COLUMN_ADVECTION	Minimum water column for advection		Needed if ADVECTION : 1	0.0		Real
Land	Runoff	WATER_COLUMN_FACE	Method for computing water column in the face	1	Using maximum level and maximum bottom	1		Integer
				2	Using maximum level and average of bottom
Land	Runoff	ROUTE_D4	Connect/disconnect route of water in 8 direction if accumulation cells exist	0/1	Inactive/Active	0		Boolean
Land	Runoff	ROUTE_D4_ON_DN	Connect/disconnect route of water in 8 direction on cells that have drainage network	0/1	Inactive/Active	0		Boolean
Land	Runoff	SIMPLE_CHANNEL_FLOW		0/1	Inactive/Active	0		Boolean
Land	Runoff	STABILIZE	Connect/disconnect stability criteria	0/1	Inactive/Active	0		Boolean
Land	Runoff	STABILIZE_FACTOR	Fraction of cell volume allowed for volume variation in one time step		Needed if STABILIZE : 1	0.1	%	Real

Module Basin

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Basin	ATMOSPHERE	Use Module Atmosphere	0/1	Inactive/Active	1		Boolean
Land	Basin	DRAINAGE_NET	Use Module DrainageNetork	0/1	Inactive/Active	1		Boolean
Land	Basin	POROUS_MEDIA	Use Module Porous Media	0/1	Inactive/Active	1		Boolean
Land	Basin	RUN_OFF	Use Module RunOff	0/1	Inactive/Active	1		Boolean

Module Irrigation

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Irrigation	ACTIVE				1		Boolean
Land	Irrigation	END_INSTANT_THRESHOLD		0-23		23.0	hours	Integer
Land	Irrigation	GEAR_DEBIT				10.0	mm	Real
Land	Irrigation	GEAR_EFFICIENCY				0.85		Real
Land	Irrigation	GEAR_MAX_VEL				4.0		Real
Land	Irrigation	GEAR_MIN_VEL				0.2		Real
Land	Irrigation	GEAR_TYPE		1	CenterPivot	1		Integer
				2	LinearPivot
				3	Sprinkler
				4	GravitySystem
				5	DripIrrigation
Land	Irrigation	HEAD_TARGET				-10.0	m	Real
Land	Irrigation	HEAD_THRESHOLD				-6.0	m	Real
Land	Irrigation	MAX_CONSECUTIVE_DAYS				2	days	Integer
Land	Irrigation	MAX_DAILY_IRRIGATION_TIME				86400.0	seconds	Integer
Land	Irrigation	MAX_DEPTH_TO_CHECK				0.2	m	Real
Land	Irrigation	MAX_SATURATED_FRACTION		0-1		0.3		Real
Land	Irrigation	METHOD		1	Fixed Irrigation (Fixed irrigation is provided by the user)	1		Integer
				2	IrrigationBySteps
				3	ContinuousIrrigation
Land	Irrigation	MIN_INTERVAL_BETWEEN_EVENTS				86400.0	seconds	Integer
Land	Irrigation	NAME						String
Land	Irrigation	SATURATION_THRESHOLD		0-1		0.9		Real
Land	Irrigation	SINGLE_SYSTEM		0/1		0		Boolean
Land	Irrigation	START_INSTANT_THRESHOLD		0-23		0.0	hours	Integer
Land	Irrigation	START_TIME
Land	Irrigation	STOP_TIME

Module PorousMedia

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	PorousMedia	ALPHA					1/m	Real
Land	PorousMedia	BOTTOM_FILE	Path to Bottom Topography File			-		String
Land	PorousMedia	CALC_DRAINAGE_FLUX		0/1		1		Boolean
Land	PorousMedia	CALC_HORIZONTAL		0/1		1		Boolean
Land	PorousMedia	COMPUTE_HYDRO_PRESSURE		0/1		1		Boolean
Land	PorousMedia	COMPUTE_SOIL_FIELD		0/1		0		Boolean
Land	PorousMedia	CONDUTIVITYFACE	Way to interpolate conducivity face	1	Average	1	-	Integer
				2	Maximum
				3	Minimum
				4	Weigthed
				5	Geometric Average
Land	PorousMedia	CONTINUOUS_OUTPUT_FILE	Writes "famous" iter.log	0/1		1		Boolean
Land	PorousMedia	CUT_OFF_THETA_HIGH	Set Theta = ThetaS when Theta > ThetaS			1e-15		Real
Land	PorousMedia	CUT_OFF_THETA_LOW	Disables calculation when Theta is near ThetaR			1e-6		Real
Land	PorousMedia	DECREASE_DT	Decrease of DT when iter > MAX_ITER			0.70		Real
Land	PorousMedia	DN_LINK
Land	PorousMedia	DN_LINK_AREA_METHOD						Integer
Land	PorousMedia	FC_K_FACTOR						Real
Land	PorousMedia	GW_SAT_FACTOR				0.99		Real
Land	PorousMedia	HEAD_LIMIT				-100.0	m	Real
Land	PorousMedia	HORIZONTAL_K_FACTOR	Factor for Horizontal Conductivity = Kh / Kv			1		Real
Land	PorousMedia	ID						Integer
Land	PorousMedia	IGNORE_WATER_COLUMN_ON_EVAP		0/1		1		Boolean
Land	PorousMedia	IMPOSE_BOUNDARY_VALUE		0/1		0		Boolean
Land	PorousMedia	IMPOSE_BOUNDARY_BOTTOM		0/1		0		Boolean
Land	PorousMedia	IMPOSE_BOUNDARY_BOTTOM_CONDITION
Land	PorousMedia	INCREASE_DT	Increase of DT when iter < MIN_ITER			1.25		Real
Land	PorousMedia	INFIL_CONDUCTIVITY
Land	PorousMedia	L_FIT						Real
Land	PorousMedia	LIMIT_EVAP_HEAD		0/1		0		Boolean
Land	PorousMedia	LIMIT_EVAP_WATER_VEL		0/1		0		Boolean
Land	PorousMedia	MAX_DTM_FOR_BOUNDARY
Land	PorousMedia	MIN_THETAF_FOR_BOUNDARY				0		Real
Land	PorousMedia	N_FIT						Real
Land	PorousMedia	SAT_K	Saturation conductivity				m/s	Real
Land	PorousMedia	START_WITH_FIELD	Sets Theta initial Field Capacity	0/1		1		Boolean
Land	PorousMedia	STOP_ON_WRONG_DATE	Stops if previous run end is different from actual Start	0/1		1		Boolean
Land	PorousMedia	THETA_HYDRO_COEF				0.98		Real
Land	PorousMedia	THETA_R	Residual water content					Real
Land	PorousMedia	THETA_S	Saturation water content					Real
Land	PorousMedia	THETA_TOLERANCE	Converge Parameter			0.001		Real
Land	PorousMedia	VEL_HYDRO_COEF				1		Real

ModulePorousMediaProperties

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	PorousMediaProperties
Land	PorousMediaProperties
Land	PorousMediaProperties

ModuleReservoirs

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Reservoirs	BOTTOM_FLUXES	Connect or Disconnect bottom fluxes	0/1		0		Boolean
Land	Reservoirs	CONTINUOUS	Computations follow from another simulation	0/1				Boolean
Land	Reservoirs	DISCHARGES	Connect or Disconnect discharges	0/1		0		Boolean
Land	Reservoirs	INITIAL_VOLUME_DEFAULT_METHOD	start percentage full	0/1				Integer
Land	Reservoirs	PROP_COMPUTE_METHOD	Water properties concentration	1	instant mixing	1		Integer
				2	retention time full mixing
Land	Reservoirs	RESERVOIR_FILE	Path to reservoirs properties File					String
Land	Reservoirs	START_PERCENTAGE_FULL	percentage of max volume at start	0/100.0				Real
Land	Reservoirs	SURFACE_FLUXES	Connect or Disconnect surface fluxes	0/1		0		Boolean
Land	Reservoirs	TIME_SERIE	Checks if the user wants to write time series of the particle properties	0/1				Boolean
Land	Reservoirs	TIME_SERIE_LOCATION	Path to time serie locations file					String

Reservoir Parameters

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Reservoirs	CONSTRUCTION_YEAR	The year when the reservoir begin to operate					Integer
Land	Reservoirs	COORDINATES	Longitude and latitude geographic coordenates of the reservoir
Land	Reservoirs	DN_NODE_ID:	ID location of the reservoir in the Drainage Network					Integer
Land	Reservoirs	GRID_I	Cell row where the reservoir is located in the GRID					Integer
Land	Reservoirs	GRID_J	Cell column where the reservoir is located in the GRID					Integer
Land	Reservoirs	ID	Reservoir ID					Integer
Land	Reservoirs	NAME	Reservoir name
Land	Reservoirs	MAX_OUTFLOW	Maximum outflow the reservoir can operate					Real
Land	Reservoirs	MAX_VOLUME	maximum volume the reservoir can operate					Real
Land	Reservoirs	MIN_OUTFLOW	Enviromental flow			0		Real
Land	Reservoirs	MIN_VOLUME	minimum volume the reservoir operates					Real
Land	Reservoirs	OPERATION_TYPE	Type of operation for the outflow in the reservoir	1	Operation is defined by the water level and the outflow			Integer
				2	Operation is defined by the water level and the outflow as a percentage of the inflow
				3	Operation is defined by the percentage of reservoir volume and the outflow
				4	Operation is defined by the percentage of reservoir volume and the outflow as a percentage of the inflow
				5	Operation is defined by the percentage of reservoir volume and the outflow as a percentage of the maximum outflow

ModuleRunoffProperties

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	RunoffProperties
Land	RunoffProperties
Land	RunoffProperties

ModuleSnow

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Snow
Land	Snow
Land	Snow

ModuleVegetation

Vegetation.dat

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	ADJUST_RUE_FOR_CO2	Connects/disconnects CO2 limitation on plant growth	0/1	Inactive/Active	1	-	Boolean
Land	Vegetation	ADJUST_RUE_FOR_VPD	Connects/disconnects Vapour Pressure Deficit limitation plant growth	0/1	Inactive/Active	1	-	Boolean
Land	Vegetation	ATMOSPHERE_CO2	Atmosphere CO2 concentrations - should be atmosphere prop			330	ppm	Real
Land	Vegetation	ATMOSPHERE_OUTPUT	Output averaged atmosphere properties during dt	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	CHANGE_CANOPY_HEIGHT	Changes made to swat code because showed error with grazing	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	CHANGE_LAI_SENESCENCE	Changes made to swat code because showed error with grazing	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	DORMANCY	Connects/disconnects dormancy	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	EVOLUTION	Global properties evolution	1	Read from file	-		Integer
				2	Vegetation growth model
Land	Vegetation	FEDDES_DATABASE	Readed if not using growth simulation	-			-	String
Land	Vegetation	FERTILIZATION	Connects/disconnects fertilization	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	FERTILIZER_DATABASE	Readed if growth simulation and if FERTILIZATION : 1	-			-	String
Land	Vegetation	FLUXES_TO_SOIL_OUTPUT	Output fluxes to soil	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	GRAZING	Connects/disconnects grazing	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	GROWTH_DATABASE	Growth parameters for each vegetation type - read in case of vegetation growth simulation	-			-	String
Land	Vegetation	HARVEST_KILL	Connects/disconnects Harvest and/or Kill	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	INTEGRATION_DT	DT to integrate external variables until vegetation is called (vegetation DT)			86400	seconds	Real
Land	Vegetation	LIMIT_TRANSP_WATER_VEL	!Read if WATER_UPTAKE_METHOD == 1	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	MODEL_EVOLUTION	Global properties evolution	1	Vegetation growth will NOT be modeled	-		Integer
				2	SWAT method will be used to model vegetation growth
Land	Vegetation	NITROGEN_DISTRIBUTION_PARAMETER				20		Real
Land	Vegetation	NITROGEN_STRESS	Connects/disconnects N limitation on plant growth	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	NUTRIENT_FLUXES_WITH_SOIL	Connects/disconnects nutrient fluxes with soil	0/1	Inactive/Active	1	-	Boolean
Land	Vegetation	NUTRIENT_UPTAKE_METHOD	-	1	uptake is: concentration * water uptake	2		Integer
				2	SWAT based (independent of water uptake)
				3	NO nutrient uptake
Land	Vegetation	NUTRIENT_STRESS_METHOD	-	1	Effective/optimal	2		Integer
				2	SWAT based
Land	Vegetation	PARAMETERS_FILE	Agricultural practices definition	-			-	String
Land	Vegetation	PESTICIDE	Connects/disconnects pesticides	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	PESTICIDE_DATABASE	Readed if growth simulation and PESTICIDE : 1	-			-	String
Land	Vegetation	PHOSPHORUS_DISTRIBUTION_PARAMETER				20		Real
Land	Vegetation	PHOSPHORUS_STRESS	Connects/disconnects P limitation on plant growth	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	ROOT_PROFILE	if WATER_UPTAKE_METHOD = 1	1	Triangular	1		Integer
				2	Constant
				3	Exponential(SWAT-like)
Land	Vegetation	SALINITY_STRESS_METHOD	if WATER_UPTAKE_METHOD = 1	1	Threshold/Slope	1		Integer
				2	VanGenuchten(not implemented yet)
Land	Vegetation	TEMPERATURE_STRESS	Connects/disconnects temp. limitation on plant growth	0/1	Inactive/Active	0	-	Boolean
Land	Vegetation	VEGETATION_ID_FILE	Vegetation distribution grid path	-			-	String
Land	Vegetation	VEGETATION_DT	Vegetation DT	-			seconds	Real
Land	Vegetation	WATER_UPTAKE		0/1	Inactive/Active	1	-	Boolean
Land	Vegetation	WATER_UPTAKE_COMPENSATION_FACTOR	Factor for uptake compensation from lower layers if computed layer demand is not met if zero there will exist no compensation. If 1. total demand no met may come from lower layers			0.		real
Land	Vegetation	WATER_UPTAKE_METHOD	-	1	according to root profile	1		Integer
				2	SWAT based (exponential and thresholds)
Land	Vegetation	WATER_UPTAKE_STRESS_METHOD	if WATER_UPTAKE_METHOD = 1	1	Feddes	1		Integer
				2	VanGenuchten
Land	Vegetation	WATER_STRESS	Connects/disconnects water limitation on plant growth	0/1	Inactive/Active	1	-	Boolean

Vegetation Parameters File

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	AGRIC_PRACT_ID						Integer
Land	Vegetation	FILENAME						String
Land	Vegetation	GRAZING_BIOMASS	grazed biomass				kh/ha.day	Real
Land	Vegetation	GRAZING_DAYS	Days of grazing (continuous)					Integer
Land	Vegetation	GRAZING_FRACTION_TO_MANURE	fraction of grazed biomass that goes to manure in same cell and day (0-1)					Real
Land	Vegetation	GRAZING_MANURE_NFRACTION	fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio)					Real
Land	Vegetation	GRAZING_MANURE_NUREAFRACTION	fraction of manure N that is Urea (0-1). The remainder will be organic N					Real
Land	Vegetation	GRAZING_START_JULIANDAY	julian day when grazing will occur					Integer
Land	Vegetation	GRAZING_START_PLANTHU	Percentage of POTENTIAL YEARLY HU when grazing will occur					Real
Land	Vegetation	HARVEST_EFFICIENCY	Efficiency for harvest operation (residue if lower than 1)					Real
Land	Vegetation	HARVEST_JULIANDAY	julian day when harvest operation occur					Integer
Land	Vegetation	HARVEST_PLANTHU	Percentage of PLANT ACCUMULATED HU when harvest operation occur					Real
Land	Vegetation	HARVESTKILL_JULIANDAY	julian day when harvestkill operation occur					Integer
Land	Vegetation	HARVESTKILL_PLANTHU	Percentage of PLANT ACCUMULATED HU when harvestkill operation occur					Real
Land	Vegetation	KILL_JULIANDAY	julian day when harvestkill operation occur					Integer
Land	Vegetation	KILL_PLANTHU	Percentage of PLANT ACCUMULATED HU when kill operation occur					Real
Land	Vegetation	MATURITY_HU	Total PLANT ACCUMULATED HU when reaching maturity					Integer
Land	Vegetation	MINIMUM_BIOMASS_FOR_GRAZING	minimum biomass for grazing				kg/ha	Real
Land	Vegetation	NAME						String
Land	Vegetation	PLANTING_HUBASE	Percentage of POTENTIAL YEARLY HU when planting will occur					Real
Land	Vegetation	PLANTING_JULIANDAY	Julian day when planting will occur					Integer
Land	Vegetation	TRAMPLING_BIOMASS	biomass not eaten but removed from plant and moved to soil, related to grazing efficiency				kg/ha.day	Real
Land	Vegetation	VEGETATION_ID	crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database)					Integer

Fertilization Parameters File

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	EXPLICIT_PHOSPHORUS		1	Explicit add phosphorus if needed	-		Boolean
				0	Add phosphorus if nitrogen needed (SWAT method)
Land	Vegetation	FERTILIZER_APPLICATION_HU	Percentage of POTENTIAL YEARLY HU when pesticide application will occur					Real
Land	Vegetation	FERTILIZER_APPLICATION_JDAY	julian day when pesticide application will occur					Integer
Land	Vegetation	FERTILIZER_APPLICATION_KG_HA	Amount of fertilizer applied				kg/ha	Real
Land	Vegetation	FERTILIZER_CONT_DAYS	how many days of continuous application (read if FERTILIZER_CONT_ON : 1)					Integer
Land	Vegetation	FERTILIZER_CONT_ON		1	If this is a continuous fertilizer application	-		Boolean
				0	or absent if not
Land	Vegetation	FERTILIZER_ID	Fertilizer used in autofertilization (see fertilizer database)					Integer
Land	Vegetation	N_STRESS_TYPE		1	NTarget	-		Integer
				2	Annual Max approach
Land	Vegetation	NITROGEN_ANNUAL_MAX	Maximum amount of fertilizer in one year				kg/ha	Real
Land	Vegetation	NITROGEN_APPLICATION_MAX	Maximum amount of fertilizer in one application				kg/ha	Real
Land	Vegetation	NITROGEN_TRESHOLD	Percentage of stress below which autofertilization starts (0-1)					Real
Land	Vegetation	PESTICIDE_APPLICATION_HU	Percentage of POTENTIAL YEARLY HU when pesticide application will occur					Real
Land	Vegetation	PESTICIDE_APPLICATION_JDAY	julian day when pesticide application will occur					Integer
Land	Vegetation	PESTICIDE_APPLICATION_KG_HA	Amount of pesticide applied				kg/ha	Real
Land	Vegetation	PESTICIDE_ID	Pesticide used in this application (see pesticide database)					Integer
Land	Vegetation	PESTICIDE_CONT_DAYS	how many days of continuous application (read if PESTICIDE_CONT_ON : 1)					Integer
Land	Vegetation	PESTICIDE_CONT_ON		1	If this is a continuous pesticide application	-		Boolean
				0	or absent if not
Land	Vegetation	PHOSPHORUS_ANNUAL_MAX	only read if EXPLICIT_PHOSPHORUS : 1					Real
Land	Vegetation	PHOSPHORUS_APPLICATION_MAX	only read if EXPLICIT_PHOSPHORUS : 1					Real
Land	Vegetation	PHOSPHORUS_TRESHOLD	only read if EXPLICIT_PHOSPHORUS : 1					Real

Growth Database File

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	BASE_TEMPERATURE						Real
Land	Vegetation	BIOMASS_ENERGY_RATIO						Real
Land	Vegetation	BIOMASS_ENERGY_RATIO_HIGH						Real
Land	Vegetation	BIOMASS_FRAC_REMOVED_DORMANCY						Real
Land	Vegetation	CANOPY_HEIGHT_MAX						Real
Land	Vegetation	CO2_HIGH						Real
Land	Vegetation	GROWFRACTION_1						Real
Land	Vegetation	GROWFRACTION_2						Real
Land	Vegetation	GROWFRACTION_LAIDECLINE						Real
Land	Vegetation	LAI_MAX						Real
Land	Vegetation	LAI_MIN_DORMANCY						Real
Land	Vegetation	MINIMUM_HARVEST_INDEX						Real
Land	Vegetation	OPTIMAL_HARVEST_INDEX						Real
Land	Vegetation	OPTIMAL_LAIMAXFRACTION_1						Real
Land	Vegetation	OPTIMAL_LAIMAXFRACTION_2						Real
Land	Vegetation	OPTIMAL_NITROGENFRACTION_N1						Real
Land	Vegetation	OPTIMAL_NITROGENFRACTION_N2						Real
Land	Vegetation	OPTIMAL_NITROGENFRACTION_N3						Real
Land	Vegetation	OPTIMAL_PHOSPHORUSFRACTION_P1						Real
Land	Vegetation	OPTIMAL_PHOSPHORUSFRACTION_P2						Real
Land	Vegetation	OPTIMAL_PHOSPHORUSFRACTION_P3						Real
Land	Vegetation	OPTIMAL_TEMPERATURE						Real
Land	Vegetation	PLANT_TYPE						Integer
Land	Vegetation	RADIATION_EXTINCTION_COEF						Real
Land	Vegetation	ROOT_DEPTH_MAX						Real
Land	Vegetation	RUE_DECLINE_RATE						Real
Land	Vegetation	TREE_MAXIMUMBIOMASS						Real
Land	Vegetation	TREE_YEARSTOMATURITY						Integer
Land	Vegetation	YELD_NITROGENFRACTION						Real
Land	Vegetation	YELD_PHOSPHORUSFRACTION						Real

Pesticide Database File

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	PESTICIDE_APPLICATION_JDAY	julian day when pesticide application will occur					Integer
Land	Vegetation	PESTICIDE_APPLICATION_KG_HA	Amount of pesticide applied				kg/ha	Real
Land	Vegetation	PESTICIDE_ID						Integer
Land	Vegetation	PESTICIDE_NAME						String

Fertilizer Database File

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	AMMONIA_FRACTION_IN_MINERAL_N						Real
Land	Vegetation	FERTILIZER_ID						Integer
Land	Vegetation	FERTILIZER_FRACTION_IN_SURFACE						Real
Land	Vegetation	FERTILIZER_NAME						String
Land	Vegetation	MINERAL_N_FRACTION_IN_FERTILIZER						Real
Land	Vegetation	MINERAL_P_FRACTION_IN_FERTILIZER						Real
Land	Vegetation	ORGANIC_N_FRACTION_IN_FERTILIZER						Real
Land	Vegetation	ORGANIC_P_FRACTION_IN_FERTILIZER						Real

Feddes Database File

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Land	Vegetation	FEDDES_H1	higher head for transpiration (saturation and oxygen loss)				m	Real
Land	Vegetation	FEDDES_H2	1st optimal head for transpiration				m	Real
Land	Vegetation	FEDDES_H3	2nd optimal head for transpiration				m	Real
Land	Vegetation	FEDDES_H3H					m	Real
Land	Vegetation	FEDDES_H3L					m	Real
Land	Vegetation	FEDDES_H4	lower head for transpiration (wilting)				m	Real
Land	Vegetation	FEDDES_R2L					m	Real
Land	Vegetation	FEDDES_R2H					m	Real
Land	Vegetation	FEDDES_TYPE		1	Normal	1	-	Integer
				2	With points
				3	Variable consoant the transpiration
Land	Vegetation	SALINITY_STRESS_SLOPE
Land	Vegetation	SALINITY_STRESS_THRESHOLD
Land	Vegetation	STRESS_INTERACTION		1	Additive	1	-	Integer
				2	Multiplicative
				3	Min of all
Land	Vegetation	USE_SALINITY		1	Yes	0	-	Boolean
				0	No
Land	Vegetation	VEGETATION_ID						Integer

MOHID Water

Module Assimilation

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Assimilation	COLD_RELAX_PERIOD	Period of time along which relaxation has a linear increase
Water	Assimilation	DESCRIPTION	Short description about the assimilation property
Water	Assimilation	DIMENSION	Number of dimensions of the assimilation field	2	Two-Dimensional property
				3	Three-Dimensional property
Water	Assimilation	NAME	Name of the assimilation property
Water	Assimilation	OUTPUT_HDF	Output HDF results for assimilation property
Water	Assimilation	OUTPUT_TIME	Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water	Assimilation	TIME_SERIE	Output time series for assimilation property
Water	Assimilation	TIME_SERIE_LOCATION	Path to time serie locations file
Water	Assimilation	TYPE_ZUV	Reference of the field to the grid.	U	Variable is referenced to the XX faces of the control volume
				V	Variable is referenced to the YY faces of the control volume
				Z	Variable is defined in the center of the control volume
Water	Assimilation	UNITS	Assimilation property units
Water	Assimilation	VGROUP_PATH

Module Consolidation

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Consolidation	BOXFLUXES	Path to boxes file. If specified in input data file, computes box integration based on the defined file.
Water	Consolidation	COMPUTE_SHEAR_STRESS	Compute shear stress or read from file
Water	Consolidation	CONSOLIDATION	Specifies if consolidation is to be computed
Water	Consolidation	CONSOLIDATION_DT	Time step for consolidation
Water	Consolidation	CONTINUOUS	Speficies if initialization is based in previous run
Water	Consolidation	CSE_COEF	Coeficient to compute exponential increase of critical shear stress for erosion with depth
Water	Consolidation	DECAYMENT	Computes porosity decayment (compaction) inside the sediment compartment
Water	Consolidation	DECAYTIME	Decay factor for consolidation
Water	Consolidation	INFINITE_CSE	Maximum critical shear stress for erosion
Water	Consolidation	MAX_THICKNESS	Maximum layer thickness allowed for a sediment layer
Water	Consolidation	MIN_THICKNESS	Minimum thickness allowed for a sediment layer
Water	Consolidation	OUTPUT_HDF	Output HDF results
Water	Consolidation	OUTPUT_TIME	Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water	Consolidation	SURFACE_CSE	Critical shear stress for erosion for the top layer
Water	Consolidation	TIME_SERIE	Output time series
Water	Consolidation	TIME_SERIE_LOCATION	Path to time serie locations file

Module FreeVerticalMovement

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	FreeVerticalMovement	CHS	Hindered settling concentration threshold
Water	FreeVerticalMovement	DEPOSITION	Compute deposition for particulate property
Water	FreeVerticalMovement	FREEVERT_IMPEXP_ADV	Coeficient to compute vertical movement through implicit or explicit methods	0.0	Implicit
				1.0	Explicit
Water	FreeVerticalMovement	KL	Parameter to compute settling velocity based on cohesive sediment concentration
Water	FreeVerticalMovement	KL1	Parameter to compute settling velocity based on cohesive sediment concentration
Water	FreeVerticalMovement	M	Parameter to compute settling velocity based on cohesive sediment concentration
Water	FreeVerticalMovement	ML	Parameter to compute settling velocity based on cohesive sediment concentration
Water	FreeVerticalMovement	SALTINT	Definition of free vertical movement being function of salinity
Water	FreeVerticalMovement	SALTINTVALUE	Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
Water	FreeVerticalMovement	WS_TYPE	Method to compute settling velocity	1	Prescribe a constant settling velocity for particulate property
				2	Compute settling velocity as function of cohesive sediment concentration
Water	FreeVerticalMovement	WS_VALUE	Prescribed constant settling velocity

Module Hydrodynamic

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Hydrodynamic	ADV_METHOD_H	Defines the horizontal numerical method of advection.
Water	Hydrodynamic	ADV_METHOD_V
Water	Hydrodynamic	ATM_PRESSURE	Checks if the user wants to consider the effect of the Atmospheric Pressure
Water	Hydrodynamic	ATM_PRESSURE_TYPE	Defines the atmospheric reference field	0	no atmospheric reference field
				1	use "atmospheric pressure" from Module Atmosphere
				2	use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
Water	Hydrodynamic	BAROCLINIC	Checks if the user pretends to compute the baroclinic pressure
Water	Hydrodynamic	BAROCLINIC_METHOD
Water	Hydrodynamic	BAROCLINIC_OBC_DISCRET
Water	Hydrodynamic	BAROCLINIC_POLIDEGREE
Water	Hydrodynamic	BAROCLINIC_RADIATION	Check if the user wants to radiate internal tides	0	No radiation
				1	Horizontal
				2	Vertical
Water	Hydrodynamic	BAROCLINIC_WAVE_DT
Water	Hydrodynamic	begin_dragcoef
Water	Hydrodynamic	BIHARMONIC	Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation
Water	Hydrodynamic	BIHARMONIC_COEF	horizontal diffusion ocefficent used when the bi-harmonic option is on
Water	Hydrodynamic	BOTTOMVISC_COEF	Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer
Water	Hydrodynamic	BOTTOMVISC_LIM	Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.
Water	Hydrodynamic	BOTTOMWATERFLUX	Checks if the user want to consider the effect of the soil infiltration or consolidation
Water	Hydrodynamic	BOUNDARYBAROCLINIC	Check if the user wants to compute the baroclinic force in the boundary faces
Water	Hydrodynamic	BOUNDARYFILE	The file name of 3D file where the relaxation coefficient are.
Water	Hydrodynamic	BOXFLUXES	The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes
Water	Hydrodynamic	BRCORIOLIS	Checks if the user wants to relax the coriolis force
Water	Hydrodynamic	BRFORCE
Water	Hydrodynamic	BRROX	Checks if the user wants to relax the baroclinic force
Water	Hydrodynamic	BRTRANSPORT	Checks if the user wants to relax the horizontal momentum transport
Water	Hydrodynamic	BRVELOCITY	Checks if the user wants to relax the horizontal velocity
Water	Hydrodynamic	BRWATERLEVEL	Checks if the user wants to relax the water level
Water	Hydrodynamic	CELERITY_TYPE
Water	Hydrodynamic	CENTRIFUGAL	Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
Water	Hydrodynamic	CONSERVATIVE_HOR_DIF	Check if the user wants to compute the horizontal diffusion in a conservative way.
Water	Hydrodynamic	CONTINUOUS	Checks if the user pretends to continue a old run
Water	Hydrodynamic	CORIOLIS	Checks if the user pretends to compute the coriolis force effect
Water	Hydrodynamic	CORRECT_WATERLEVEL	check if the user wants to corrected the water level when it is lower than a reference water level
Water	Hydrodynamic	CYCLIC_BOUNDARY	Check if the user wants to impose a CYCLIC boundary condition					Boolean
Water	Hydrodynamic	CYCLIC_DIRECTION	Check along which direction the user wants to impose a CYCLIC boundary condition	DirectionX_	Direction x
				DirectionY_	Direction Y
				DirectionXY_	Directions X and Y
Water	Hydrodynamic	DATA_ASSIMILATION	Checks if the user want to impose a flow relaxation boundary condition. By default do not use flow relaxation boundary condition					Boolean
Water	Hydrodynamic	DEADZONE	Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
Water	Hydrodynamic	DEADZONE_FILE	Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.
Water	Hydrodynamic	DECAY_IN
Water	Hydrodynamic	DECAY_OUT
Water	Hydrodynamic	DISCRETIZATION	Check what type of implicit discretization in time is choose for the global equations	1	Abbott Scheme - 4 equations per iteration
				2	Leendertse Scheme - 6 equations per iteration
Water	Hydrodynamic	DT_OUTPUT_TIME
Water	Hydrodynamic	ENERGY	Check if the user want to compute the potential and kinetic energy of the entire domain
Water	Hydrodynamic	ENERGY_DT
Water	Hydrodynamic	ENERGY_WINDOW
Water	Hydrodynamic	ENTERING_WAVE	Checks if the wave imposed in the boundary is entering in the domain or leaving it
Water	Hydrodynamic	EVOLUTION	Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.	No_hydrodynamic	No hydrodynamic
				Read_File	Read File
				Residual_hydrodynamic	Residual hydrodynamic
				Solve_Equations	Solve equations
				Vertical1D	1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
Water	Hydrodynamic	HMIN_ADVECTION	The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
Water	Hydrodynamic	HMIN_CHEZY	Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
Water	Hydrodynamic	HMIN_CONVECTION
Water	Hydrodynamic	HORIZONTALADVECTION	Checks if the user pretends to compute the horizontal advection effect
Water	Hydrodynamic	HORIZONTALCONVECTION
Water	Hydrodynamic	HORIZONTALDIFFUSION	Checks if the user pretends to compute the horizontal diffusion effect
Water	Hydrodynamic	IMPLICIT_HORADVECTION	Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly
Water	Hydrodynamic	IMPLICIT_HORCONVECTION
Water	Hydrodynamic	IMPLICIT_VERTADVECTION	Check if the vertical advection is implicit	0.0	Explicit
				0.5	Hybrid for option in (0.0, 1.0)
				1.0	Implicit
Water	Hydrodynamic	IMPLICIT_VERTCONVECTION
Water	Hydrodynamic	IMPLICIT_VERTDIFFUSION	Check if the vertical advection is implicit	0.0	Explicit
				0.5	Hybrid for option in (0.0, 1.0)
				1.0	Implicit
Water	Hydrodynamic	INERTIAL_PERIODS	The period after which the total effect of the baroclinic force is compute
Water	Hydrodynamic	INITIAL_ELEVATION	Checks if the user wants to impose a initial elevation
Water	Hydrodynamic	INITIAL_ELEVATION_VALUE	The user define with this keyword the initial elevation value
Water	Hydrodynamic	INITIAL_VEL_U	Checks if the user pretends to impose a initial U (X) velocity
Water	Hydrodynamic	INITIAL_VEL_V	Checks if the user pretends to impose a initial V (Y) velocity
Water	Hydrodynamic	INVERTED_BAROMETER_COEF	The user can change the inverted barometer solution using this calibration coefficient	1	Imposed water level using the inverted barometer simplified solution
Water	Hydrodynamic	INVERTED_BAROMETER_REF_ATM_PRESSURE	The user can also change the reference atmospheric pressure of the inverted barometer solution via this keyword	101325
Water	Hydrodynamic	INTERNAL_CELERITY
Water	Hydrodynamic	LOCAL_DENSITY	Check if the user want to divide the baroclinic pressure by the local density to compute. if this option is false is used the reference density
Water	Hydrodynamic	LOCAL_SOLUTION	Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions	1	No local solution
				2	Submodel
				3	AssimilationField
				4	Gauge
				5	AssimilaPlusSubModel
				6	GaugePlusSubModel
				7	AssimilaGaugeSubModel
Water	Hydrodynamic	MIN_COMPONENT	The minimum component of the radiative wave below which the radiation process is canceled
Water	Hydrodynamic	MIN_VELOCITY	The minimum velocity in the open boundary below which the radiation is canceled
Water	Hydrodynamic	MIN_WATERLEVEL	reference level below which the water level is corrected.
Water	Hydrodynamic	MINVEL_BAROCLINIC
Water	Hydrodynamic	MISSING_NULL	Check if the user wants to replace the missing values by zero
Water	Hydrodynamic	MOMENTUM_DISCHARGE	Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
Water	Hydrodynamic	NH_ALPHA_LU
Water	Hydrodynamic	NH_IMPLICIT_COEF_W
Water	Hydrodynamic	NH_MAXIT
Water	Hydrodynamic	NH_NORMALIZED_RESIDUAL
Water	Hydrodynamic	NH_RESIDUAL
Water	Hydrodynamic	NONHYDROSTATIC	Checks if the user want to compute the effect of local vertical acceleration over the pressure field
Water	Hydrodynamic	NORMAL_BAROCLINIC
Water	Hydrodynamic	NULL_BOUND_HORADV	Checks if the user wants to assume null horizontal advection in the open boundary
Water	Hydrodynamic	NULL_BOUND_HORCONV
Water	Hydrodynamic	OBSTACLE	Checks if the user want to parameterize the influence of an OBSTACLE in the flow, giving a determined drag coefficient
Water	Hydrodynamic	OUTPUT_FACES	Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.
Water	Hydrodynamic	OUTPUT_PROFILE	Perform profile outputs in HDF5 format
Water	Hydrodynamic	OUTPUT_TIME
Water	Hydrodynamic	POTENTIAL_ALGORITHM
Water	Hydrodynamic	RADIATION	Checks if the user wants to impose the Flather 1974 radiation boundary condition or other	0	No Radiation
				1	FlatherWindWave_
				2	FlatherLocalSolution_
				3	BlumbergKantha_
Water	Hydrodynamic	RAMP	Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
Water	Hydrodynamic	RAMP_START	This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
Water	Hydrodynamic	RECORDING	Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
Water	Hydrodynamic	REF_BOUND_WATERLEVEL
Water	Hydrodynamic	RELAX_REF_VEL
Water	Hydrodynamic	RESIDUAL	Check if the user want to compute the residual flow
Water	Hydrodynamic	RESTART_FILE_OUTPUT_TIME	Output Time to write restart files
Water	Hydrodynamic	RESTART_FILE_OVERWRITE	Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water	Hydrodynamic	SLIPPING_CONDITION	Checks if the user want to consider the slipping condition for horizontal diffusion
Water	Hydrodynamic	SLOWSTART	Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplied by a coefficient that has linear evolution between 0 and 1. By default this period is zero seconds
Water	Hydrodynamic	STATISTICS	Checks out if the user pretends the statistics of the hydrodynamic properties
Water	Hydrodynamic	STATISTICS_FILE	The statistics definition file of the hydrodynamic properties
Water	Hydrodynamic	SUBMODEL	Check if the user wants to run this model as a submodel
Water	Hydrodynamic	SURFACEWATERFLUX	Checks if the user want to consider the effect of precipitation and evaporation
Water	Hydrodynamic	TIDE	Checks if the user pretends to impose a wave tide in the open boundary
Water	Hydrodynamic	TIDEPOTENTIAL	Checks if the user want to consider the effect of the potential tide
Water	Hydrodynamic	TIME_SERIE	Checks out if the user pretends to write a time serie
Water	Hydrodynamic	TIME_SERIE_LOCATION
Water	Hydrodynamic	TLAG_FILE	The name file where are the relaxation times defined for the radiation boundary condition
Water	Hydrodynamic	TVD_METHOD_H
Water	Hydrodynamic	TVD_METHOD_V
Water	Hydrodynamic	UP_CENTER	Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme	0.0	Centred differences
				0.5	Hybrid for option in (0,1)
				1.0	Upstream
Water	Hydrodynamic	VELNORMALBOUNDARY	Checks the velocities the user want to impose in the exterior faces	1	null value
				2	null gradient
Water	Hydrodynamic	VELTANGENTIALBOUNDARY	Checks the velocities the user want to impose between two boundary points	1	null value
				2	null gradient
Water	Hydrodynamic	VERTICAL_AXISYMMETRIC	Checks if the user wants to simulate implicit the sea level evolution. This option only works if the flow has only one horizontal dimension.	0	ADI	0		INTEGER
				1	X always implicit
				2	Y always implicit
Water	Hydrodynamic	VERTICALADVECTION	Checks if the user pretends to compute the vertical advection effect
Water	Hydrodynamic	VERTICALCONVECTION
Water	Hydrodynamic	VERTICALDIFFUSION	Checks if the user pretends to compute the vertical diffusion effect
Water	Hydrodynamic	VMIN_CHEZY	Checks the minimum velocity (Vmin_Chezy) below which the chezy coefficient is constant if the water column is smaller than Hmin_Chezy. By default Vmin_Chezy is equal to 0.10 m/s
Water	Hydrodynamic	VOLUME_RELATION_MAX
Water	Hydrodynamic	VOLUMEVARIATION	Checks if the user pretends to compute the volume variation effect
Water	Hydrodynamic	WATER_DISCHARGES	Check if the user want to water discharges
Water	Hydrodynamic	WATERCOLUMN2D	water column thickness below which the 3D processes are disconnected
Water	Hydrodynamic	WATERLEVEL_MAX_MIN	Computes the spatial maps of the maximum and of the minimum water elevation.
Water	Hydrodynamic	WAVE_DIRECTION	The user with this keyword give a direction to a wave entering the domain
Water	Hydrodynamic	WAVE_STRESS	Checks if the user want to consider the effect of the waves stress. By default the waves stress is not compute
Water	Hydrodynamic	WIND	Checks if the user want to consider the effect of the wind stress. By default the wind stress is not computed	0	No wind forcing
				1	wind forcing
				2	wind forcing with a smooth start
Water	Hydrodynamic	WIND_SMOOTH_PERIOD	The user specify the wind smooth period

Module HydrodynamicFile

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	HydrodynamicFile	BAT_INTEGRATION_TYPE	It is possible to calculate the new bathymetry (spacial integration) using two different options	MaxVal_Type	Each new integrated cell has the maximum value of the cells used to do the integration of that cell
				MeanVal_Type	The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.
Water	HydrodynamicFile	DT_HYDROFILE	Time Step of the hydrodynamic file
Water	HydrodynamicFile	IN_FIELD	Input File Name
Water	HydrodynamicFile	IN_FILE_TYPE	Input File Type	BeginEnd_type
Water	HydrodynamicFile			M2_Tide_type
Water	HydrodynamicFile	IN_FILE_VERSION	Input File Version	1	Only available if LOAD_TO_MEMORY = 0
				2
Water	HydrodynamicFile	LOAD_TO_MEMORY	Load all information to memory
Water	HydrodynamicFile	N_ITEGRATION_CELLS	Number of cells that will be integrated (the integration space step)
Water	HydrodynamicFile	NEW_BATIM	Gets the name of the new bathymetry
Water	HydrodynamicFile	OUT_FIELD	Ouput Data File
Water	HydrodynamicFile	OUT_FILE_VERSION	Controls the version of the output file	1
				2
Water	HydrodynamicFile	SPACE_INTEGRATION	Verifies if the integration of fluxes in space is to be done
Water	HydrodynamicFile	TIME_INTEGRATION	Performs an integration in time,
Water	HydrodynamicFile	WINDOW	It is possible to define a window inside a bathymetry, where we want to record values to the hydrodynamic file

Module InterfaceSedimentWater

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	InterfaceSedimentWater	BEGIN_DIFF_COEF
Water	InterfaceSedimentWater	BENTHOS	Compute property benthic ecological processes
Water	InterfaceSedimentWater	BOX_TIME_SERIE	Outputs property results in box time series
Water	InterfaceSedimentWater	BOXFLUXES	Path to boxes file. If specified in input data file, computes box integration based on the defined file.
Water	InterfaceSedimentWater	CEQUALW2	Compute property CEQUALW2 benthic ecological processes
Water	InterfaceSedimentWater	CONSOLIDATION	Activates consolidation processes as well as erosion from consolidated sediment compartment
Water	InterfaceSedimentWater	DEPOSITION	Compute property deposition
Water	InterfaceSedimentWater	DESCRIPTION	Brief description of the property
Water	InterfaceSedimentWater	DESCRIPTION	Description of the rate to perform output
Water	InterfaceSedimentWater	DETRITUS	Compute property as detritus
Water	InterfaceSedimentWater	EROSION	Compute property erosion
Water	InterfaceSedimentWater	FIRSTPROP	Name of the first property involved in the rate
Water	InterfaceSedimentWater	MASS_LIMITATION	Property mass is finite
Water	InterfaceSedimentWater	MASS_MIN	Minimum mass allowed for the property if MASS_LIMITATION is on. Values of zero are allowed.
Water	InterfaceSedimentWater	NAME	Name of the property
Water	InterfaceSedimentWater	NAME	Name of the rate to perform output
Water	InterfaceSedimentWater	OLD	Initialization is made based on previous run (overrides FillMatrix keywords)
Water	InterfaceSedimentWater	OUTPUT_HDF	Outputs property results in HDF5 format
Water	InterfaceSedimentWater	OUTPUT_SHEAR_STRESS	Output shear stress in HDF format
Water	InterfaceSedimentWater	OUTPUT_TIME	Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water	InterfaceSedimentWater	PARTICULATE	Property physical state: 0 - Dissolved; 1 - Particulate
Water	InterfaceSedimentWater	REFERENCE_DEPTH	Reference depth below which shear stress is limited. Keyword is only read if SHEAR_STRESS_LIMITATION is on.
Water	InterfaceSedimentWater	REFERENCE_SHEAR_STRESS	Shear stress value assumed in limited cells when SHEAR_STRESS_LIMITATION is on
Water	InterfaceSedimentWater	RESTART_FILE_OUTPUT_TIME	Output Time to write restart files
Water	InterfaceSedimentWater	RESTART_FILE_OVERWRITE	Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water	InterfaceSedimentWater	SAND_TRANSPORT	Compute sand tranport
Water	InterfaceSedimentWater	SECONDPROP	Name of the second property involved in the rate
Water	InterfaceSedimentWater	SEDIMENT_FLUXES	Compute property fluxes between interface sediment-water and sediment column
Water	InterfaceSedimentWater	SEDIMENT_WATER_FLUXES	Compute property fluxes between sediment and water column
Water	InterfaceSedimentWater	SHEAR_STRESS_LIMITATION	Limit shear stress values in shallow zones
Water	InterfaceSedimentWater	STATISTICS_SHEAR	Perform statistics to shear velocity
Water	InterfaceSedimentWater	STATISTICS_SHEAR_FILE	Path to statistics input data file. Only read if STATISTICS_SHEAR is on.
Water	InterfaceSedimentWater	TIME_SERIE	Outputs property results in time series
Water	InterfaceSedimentWater	TIME_SERIE_LOCATION	Path to time serie locations file
Water	InterfaceSedimentWater	UNITS	Property units
Water	InterfaceSedimentWater	WATER_FLUXES	Compute property fluxes to/from water column
Water	InterfaceSedimentWater	WAVETENSION	Compute wave induced shear stress

Module Jet

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Jet	BOTTOM_SALINITY	ambient bottom salinity when a LINEAR water column is admitted
Water	Jet	BOTTOM_TEMPERATURE	ambient bottom temperature when a LINEAR water column is admitted
Water	Jet	BOTTOM_VELU	ambient bottom velocity U when a LINEAR water column is admitted
Water	Jet	BOTTOM_VELV	ambient bottom velocity V when a LINEAR water column is admitted
Water	Jet	DEFAULT_SALINITY	ambient salinity when a UNIFORM water column is admitted
Water	Jet	DEFAULT_TEMPERATURE	ambient temperature when a UNIFORM water column is admitted
Water	Jet	DEFAULT_VELU	ambient velocity U when a UNIFORM water column is admitted
Water	Jet	DEFAULT_VELV	ambient velocity V when a UNIFORM water column is admitted
Water	Jet	DT_OUTPUT	Time interval between outputs
Water	Jet	INITIAL_TRACER_CONCENTRATION	Initial concentration of generic tracer
Water	Jet	LAGRANGIAN
Water	Jet	LOCAL_TYPE	Methodology to define the ambient variables	FIELD3D	3D field generated by the MOHID system
				LINEAR	Water column where the density and velocity have a linear profile
				UNIFORM	Uniform water column
Water	Jet	MAX_DT	Maximum time step interval
Water	Jet	MAX_DV	Maximum volume variation between time steps
Water	Jet	MAX_PLUME_DIAMETER	Plume diameter from which initial dilution stops. This value is used to simulate the jets overlapping
Water	Jet	OUTFALL_ANGLE	Outfall angle
Water	Jet	OUTFALL_LENGTH	Outfall length
Water	Jet	OUTPUT_TYPE	The output can be made given the exact information in specific output times or a cloud of particles for each output time
Water	Jet	PARAMETERIZATION	Parametrization used to simulate the entrainment process	CORJET	Parameterization based on CORJET model
				JETLAG	Parameterization based on JETLAG model
Water	Jet	PARTICLES_NUMBER	In case of OUTPUT_TYPE = CLOUD this is the number of output tracer per output time interval
Water	Jet	PORT_ANGLE_HZ	Port vertical angle
Water	Jet	PORT_ANGLE_XY	Port horizontal angle
Water	Jet	PORT_BOTTOM_DISTANCE	Port distance from the bottom
Water	Jet	PORT_DIAMETER	Diameter of each port
Water	Jet	PORTS_NUMBER	Number of Ports
Water	Jet	RUN_MAX_PERIOD	Maximum run period
Water	Jet	RUN_MIN_PERIOD	Minimum run period
Water	Jet	SEDIMENT_COLUMN
Water	Jet	SURFACE_SALINITY	ambient surface salinity when a LINEAR water column is admitted
Water	Jet	SURFACE_TEMPERATURE	ambient surface temperature when a LINEAR water column is admitted
Water	Jet	SURFACE_VELU	ambient surface velocity U when a LINEAR water column is admitted
Water	Jet	SURFACE_VELV	ambient surface velocity V when a LINEAR water column is admitted
Water	Jet	WAVES

Module Lagrangian

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Lagrangian	ACCIDENT_METHOD	How to distribute initially the particles if the emission type is accident	1	The "Fay" option
				2	The "Thickness" option
Water	Lagrangian	ACCIDENT_TIME	Time when the accident occur. By default is equal to the model start time
Water	Lagrangian	ADVECTION	Move Particle due to horizontal velocity.
Water	Lagrangian	AMBIENT_CONC	Ambient concentration.
Water	Lagrangian	ASSOCIATE_BEACH_PROB	Checks if the user want to associate beaching probability to the particles
Water	Lagrangian	BEACHING
Water	Lagrangian	BEACHING_BOX_FILENAME	Link to the data file which contains the definition of the boxes used for defining the beaching probability.
Water	Lagrangian	BEACHING_LIMIT	Maximum distance between particles and coast for particle beaching
Water	Lagrangian	BOTTOM_DISTANCE	Distance from bottom below which the tracer can sediment.
Water	Lagrangian	BOTTOM_EMISSION	Checks if the tracers are emited from the bottom.
Water	Lagrangian	BOX_NUMBER	Number of box to associate to origin.
Water	Lagrangian	BOXES_BEACHING_PROB	List of Inbox Beaching Probability.
Water	Lagrangian	BOXVOLINIC	Initial Volume of a particle in the box.
Water	Lagrangian	COEF_INITIAL_MIXING	Coefficient use to control volume increase due to initial mixing
Water	Lagrangian	COMPUTE_AGE	This logical option allows to compute the age of each tracer.
Water	Lagrangian	COMPUTE_BUOYANCY	Computes Particle vertical velocity evolution due to density gradients
Water	Lagrangian	COMPUTE_PLUME	Computes Particle Plume due density gradients
Water	Lagrangian	CONC_COLUMN	Column of the time serie input where is defined a variable concentration.
Water	Lagrangian	CONC_VARIABLE	Check if the user wants a variable concentration.
Water	Lagrangian	CONCENTRATION	Concentration of the property.
Water	Lagrangian	D50
Water	Lagrangian	DEFAULT_BEACHING_PROB	The probability a particle "beaches" when beaching is enabled
Water	Lagrangian	DENSITY_METHOD	Formula to calculate particle density	1	Leendertse
				2	UNESCO
				3	Constant
Water	Lagrangian	DEPOSITION	Checks if the tracers can deposited.
Water	Lagrangian	DEPTH_CELLS	Depth in Cells (from bottom)
Water	Lagrangian	DEPTH_METERS	Depth of emission relativ to surface.
Water	Lagrangian	DISCHARGE_FILE	A Link to the data file whichs contains the time serie of the variable flow
Water	Lagrangian	DT_EMIT	The interval between emissions. By default this value is equal to DT_PARTIC
Water	Lagrangian	DT_PARTIC	Particle Time Step
Water	Lagrangian	EMISSION_SPATIAL	Type of spatial emission.	Accident	Emission as accident
				Box	Emission from a Box
				Point	Emission at a single point
Water	Lagrangian	EMISSION_TEMPORAL	Type of temporal emission	Continuous	Continuous emission
				Instantaneous	Instantaneous emission
Water	Lagrangian	EROSION_RATE	Rate of tracers erosion.
Water	Lagrangian	EULERIAN_MONITOR	Path to a boxes file to integrate eulerian concentrations based on lagrangian tracers
Water	Lagrangian	EXTINCTION_PARAMETER	This property has an extinction parameter. This parameter can be use to compute the effect of this property in the light extinction
Water	Lagrangian	FLOAT	Indicates if the particle is a floating particle (e.g. oil)
Water	Lagrangian	FLOW	The flow of the point emission
Water	Lagrangian	FLOW_COLUMN	The data column of the flow values which define the time serie of the variable flow
Water	Lagrangian	FLOW_VARIABLE	Checks if the flow of the point emission is variable DT
Water	Lagrangian	GROUP_ID	The Group ID to which the origin belongs
Water	Lagrangian	INCRP	Increment of grid cells to fill Boxes.
Water	Lagrangian	JET_DATA_FILE	Link to the data file which contains the Plume / Jet parameterizations
Water	Lagrangian	JET_DT	Time interval for the actualization of Plume Jet properties
Water	Lagrangian	KILL_LAND_PARTICLES	Kills particles which are located in a Waterpoint which is not a OpenPoint
Water	Lagrangian	MAINTAIN_RELATIVE_POSITION	Check is the user wants to maintain the vertical relative position of the origin
Water	Lagrangian	MIN_CONCENTRATION
Water	Lagrangian	MIN_SED_VELOCITY	Minimum Sedimention velocity.
Water	Lagrangian	MONITOR_BOX	Link to the data file which contains the definition of the boxes used for particle "monitoring" (Residence Time)
Water	Lagrangian	MONITOR_BOX_PROP_MASS	Name of property to monitor mass in a box
Water	Lagrangian	MOVEMENT	Type of particle aleatory horizontal movement	NotRandom	Do not consider any aleatory horizontal component
				SullivanAllen	Parameterization based on Sullivan Allen formulation
Water	Lagrangian	MOVING_ORIGIN	Checks if the Origin has a moving location
Water	Lagrangian	MOVING_ORIGIN_COLUMN_X	The data column in which the X position values are given
Water	Lagrangian	MOVING_ORIGIN_COLUMN_Y	The data column in which the Y position values are given
Water	Lagrangian	MOVING_ORIGIN_FILE	A Link to the data file which contains the time serie of the position of the origin
Water	Lagrangian	MOVING_ORIGIN_UNITS	Units in which the moving origin position is given	Meters	The units are meters
				Cells	The units are given as cells
Water	Lagrangian	NAME	Name of the property.
Water	Lagrangian	NBR_PARTIC	Number of Particles in each emission.
Water	Lagrangian	NOWQM	To compute age without running moduleWQM.
Water	Lagrangian	OLD	If the computation of this origin is continued from a previous run
Water	Lagrangian	ORIGIN_NAME	Name of the Origin. Origin Names must be unic.
Water	Lagrangian	OUTPUT_CONC	Output Integration Type	1	Uses maximum values for integration
				2	Uses average values for integration
Water	Lagrangian	OUTPUT_MAX_TRACER	Checks if the users wants to output the maximum tracer concentration in each cell
Water	Lagrangian	OUTPUT_TIME	Output Time
Water	Lagrangian	OVERLAY_VELOCITY	Checks if the user wants to add an aditional velocity to the particles
Water	Lagrangian	PARTIC_BOX	Link to the data file which contains the definition of the boxes used for particle emission
Water	Lagrangian	PARTITION_COEF_SED	Partition coefficent in the sediment.
Water	Lagrangian	PARTITION_COEF_WATER	Partition coefficient in the water column.
Water	Lagrangian	PARTITION_COUPLE_SED	Concentration of the dissolved phase in the intersticial water. The dissolved phase is admitted with a constant concentration.
Water	Lagrangian	PARTITION_COUPLE_WATER	Concentration of the dissolved phase. The dissolved phase is admitted with a constant concentration
Water	Lagrangian	PARTITION_RATE_SED	Rate of transfer between the two phases.
Water	Lagrangian	PARTITION_RATE_WATER	Rate of transfer between the two phases.
Water	Lagrangian	PARTITION_SED	Checks if the tracers has two phases (adsorbe and dissolved) in the sediment
Water	Lagrangian	PARTITION_WATER	Checks if the tracers has two phases (adsorbe and dissolved) in the water column.
Water	Lagrangian	POINT_VOLUME	Volume of instantanous emission
Water	Lagrangian	POSITION_CELLS	X and Y Position of the origin in grid cells.
Water	Lagrangian	POSITION_METERS	X and Y Position of the origin in meters.
Water	Lagrangian	RESTART_FILE_OUTPUT_TIME	Output Time to write restart files
Water	Lagrangian	RESTART_FILE_OVERWRITE	Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water	Lagrangian	SED_VELOCITY	Sedimentation Velocity.
Water	Lagrangian	SEDIMENTATION	Sedimentation type.	Imposed
				Stokes
Water	Lagrangian	SPLIT_PART	Split big particles.
Water	Lagrangian	START_PARTIC_EMIT	The Start Time of the continuous emission. By default is equal to the model start time.
Water	Lagrangian	STATISTICS	Wheter to calculate or not the statistic.
Water	Lagrangian	STATISTICS_FILE	File name with the statistics definition.
Water	Lagrangian	STATISTICS_LAG	Do a frequency analysis tracer by tracer.
Water	Lagrangian	STOP_PARTIC_EMIT	The Stop Time of the continuous emission. By default is equal to the model end time.
Water	Lagrangian	T90	Coliform Decay rate.
Water	Lagrangian	T90_VAR_METHOD_1	Method to compute T90 function.	1	Fecal decay according to Canteras et al. (1995)
				2	Fecal decay according to Chapra (1997)
Water	Lagrangian	T90_VARIABLE	Check if the user wants to compute T90 function of ambient properties: salinity,temperature,light.
Water	Lagrangian	TAU_DEP	Critical shear stress of deposition.
Water	Lagrangian	TAU_ERO	Critical shear stress of erosion.
Water	Lagrangian	THEORIC_AREA	Uses Theoric Area for Oil Processes.
Water	Lagrangian	THICKNESS_METERS	The initial thickness of the particles. (For floating particle only). (Used to calculate the area if the emission is accident and the total number of particles if the emission is box)
Water	Lagrangian	TIME_DECAY	Decay time is used to compute a relxation term that makes the critical shear stress of erosion tend to the average tracer erosion rate of the cell where the tracer is deposited.
Water	Lagrangian	TIME_SERIE	Checks if the user wants to write time series of the particle properties
Water	Lagrangian	TIME_SERIE_LOCATION	Gets the position of the water points in the Map Module.
Water	Lagrangian	TURB_V	Vertical turbulence parameterization	Constant	Constant Parameterization
				Profile	Parameterization based on the velocity profile
Water	Lagrangian	TVOL200	Time needed for a particle to double volume. Turns particles volume variation on.
Water	Lagrangian	UNITS	Units of the property.
Water	Lagrangian	VARVELH	Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
Water	Lagrangian	VARVELHX	Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
Water	Lagrangian	VARVELV	Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
Water	Lagrangian	VARVELVX	Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
Water	Lagrangian	VISCCINREF
Water	Lagrangian	VOLFAC	Factor which indicates when a particle with variable volume is to be deleted (Volume > Initial Volume * VOLFAC)
Water	Lagrangian	VOLUME_INCREASE	How volume increase is calculated	Double	The doublication occur after the time given by TVOL200
				Velocity	The doublication occur after the time given by TVOL200, but also depends on the local velocity
Water	Lagrangian	WINDCOEF	Wind transfer Coefficient
Water	Lagrangian	WINDXY	If this keyword is defined than the wind velocity defined in the atmosphere module is override and the wind use by the tracers is this one
Water	Lagrangian	WQM_DATA_FILE	Location of the File defining the Water Quality configuration.

Module Model

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Model	OPENMP_NUM_THREADS	Sets the number of threads to use with openmp.
Land	Model	SYNC_DT	Provide results at the exacts time	0/1	Inactive/Active	0		Boolean

Module Oil

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Oil	API	American Petroleum Institute (API) Gravity
Water	Oil	ASPHALTENECONTENT	Asphaltene Content
Water	Oil	CEMULS	Emulsification Constant ((% of evaporated oil before emulsification brgins)
Water	Oil	CPDISTEXP	Cumulative Volume Fraction of Oil Distilled
Water	Oil	DISPERSIONMETHOD	Method for Dispersion	Delvigne	Dispersion parameterized with Delvigne formulation
				Mackay	Dispersion parameterized with Mackay formulation
Water	Oil	DT_OIL_INTPROCESSES	Time Step used in computation of oil internal processes
Water	Oil	EFFICIENCY	% of Area sprayed effectively dispersed
Water	Oil	EMULSIFICATIONMETHOD	Method for Emulsification	Mackay	Emulsification parameterized following Mackay formulation
				Rasmussen	Emulsification parameterized following Rasmussen formulation
Water	Oil	EmulsParameter	Water Uptake Parameter
Water	Oil	END_CHEM_DISPERSION	Ending Time of Dispersant Application
Water	Oil	END_MEC_CLEANUP	Ending Time of Mechanical Cleanup Operation
Water	Oil	EVAPORATIONMETHOD	Method for Evaporation	EvaporativeExposure	Evaporation computed with evaporative exposure method
				Fingas	Evaporation computed with Fingas formulations
				PseudoComponents	Evaporation computed with pseudocomponents method
Water	Oil	FINGAS_EVAP_CONST1	Fingas Empirical Constant 1 (Necessary If Fingas_Evap_Emp_Data = 1)
Water	Oil	FINGAS_EVAP_CONST2	Fingas Empirical Constant 2 (Necessary If Fingas_Evap_Emp_Data = 1)
Water	Oil	FINGAS_EVAP_EMP_DATA	Knowledge of Empirical Data for Evaporation
Water	Oil	FINGAS_EVAP_EQTYPE	Evaporation Equation Type	Logarithmic	Logarithmic Equation Type for Evaporation
				SquareRoot	Square Root Equation Type for Evaporation
Water	Oil	MAXVWATERCONTENT	Maximum Volume Water Content
Water	Oil	NBRDISTCUTS	Number of Distillation Cuts
Water	Oil	OIL_CHEM_DISPERSION	Computes Chemical Dispersants Application
Water	Oil	OIL_DISPERSION	Computes Oil Dispersion Process
Water	Oil	OIL_DISSOLUTION	Computes Oil Dissolution Process
Water	Oil	OIL_EMULSIFICATION	Computes oil emulsification process
Water	Oil	OIL_EVAPORATION	Computes Oil Evaporation Process
Water	Oil	OIL_MEC_CLEANUP	Computes Mechanical Cleanup Operation
Water	Oil	OIL_SEDIMENTATION	Computes Oil Sedimentation Process
Water	Oil	OIL_SPREADING	Computes Oil Spreading Process
Water	Oil	OIL_TIMESERIE	Name of the Output results file
Water	Oil	OILTYPE	Oil Type	Crude	Crude Oil
				Refined	Refined oil
Water	Oil	OWINTERFACIALTENSION	Oil-Water Interfacial Tension
Water	Oil	P_AREA_SPRAYED	% of Spill Area sprayed whit dispersant
Water	Oil	PERC_MASSDIST180	%(Wheight) of Oil Evaporated until 180ºC (Necessary If Fingas_Evap_Emp_Data = 0)
Water	Oil	POURPOINT	Pour Point
Water	Oil	RECOVERY	rate or volume of Emulsion Recovered
Water	Oil	RECOVERY_DATAFORM	DataForm of emulsion recovered
Water	Oil	SPREADINGMETHOD	Method for Spreading	Fay	Mechanical spreading simply based on Fay theory
				ThicknessGradient	Oil mechanical spreading based on thickness gradients, parameterised with fay theory
Water	Oil	START_CHEM_DISPERSION	Starting Time of Dispersant Application
Water	Oil	START_MEC_CLEANUP	Starting Time of Mechanical Cleanup Operation
Water	Oil	TDISTEXP	Vapour Temperature of Distillate
Water	Oil	TEMPVISCREF	Temperature of Reference Viscosity
Water	Oil	USERCOEFVELMANCHA	Empirical Thickness Gradient's Spreading Velocity Coefficient
Water	Oil	VISCCINREF	Reference Cinematic Viscosity
Water	Oil	VISCREF	Reference Dynamic Viscosity
Water	Oil	WAXCONTENT	Wax Content

Module Sand

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Sand	BATHYM_EVOLUTION	it´s a conditional keyword: check if the user wants to let the bathymetry evolve due to sand transport
Water	Sand	BATIM_DT	The time step of the BATIM evolution
Water	Sand	BOUNDARY	check what type off boundary condition the user wants: 1 -> NullGradient, 2 -> Cyclic
Water	Sand	BOX_FILENAME	path to the file where the boxes are defined
Water	Sand	BOXFLUXES	It´s a conditional keyword to compute fluxes between boxes
Water	Sand	CLASS_ID	??
Water	Sand	CLASS_NAME	??
Water	Sand	CLASSES_NUMBER	The number of sand classes the user wants to define
Water	Sand	CRITICAL_SLOP	slope above which there is lateral erosion.
Water	Sand	DENS_SAND	Sand density
Water	Sand	DISCHARGES	??
Water	Sand	FILTER_RADIUS
Water	Sand	FILTER_SCHEME	the keyword can be equal to NO FILTER or MODIFY LAX.
Water	Sand	FLUX_SLOP	??
Water	Sand	OLD	it´s a conditional keyword: check if the user wants to start from the final condition of a previous run
Water	Sand	OUTPUT_TIME	output time step
Water	Sand	POROSITY	porosity of the sediments
Water	Sand	SAND_DT	The time step of the SAND evolution
Water	Sand	SAND_MIN	The minimum sand layer thickness
Water	Sand	SMOOTH_SLOP	it´s a conditional keyword: check if the user wants to compute transport in strong slopes
Water	Sand	TAU_MAX	the maximum bottom shear stress
Water	Sand	TIME_SERIE	it´s a conditional keyword: checks out if the user pretends to write a time serie for the transport fluxes
Water	Sand	TIME_SERIE_LOCATION	path to the file where the boxes are defined
Water	Sand	TRANSPORT_FACTOR	it´s a factor to amplify the transport
Water	Sand	TRANSPORT_METHOD	Methodology use to compute the sand transport

Module SedimentProperties

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	SedimentProperties	ADVECTION_DIFFUSION	Compute property advection-diffusion
Water	SedimentProperties	BIOTURBATION	Compute bioturbation processes
Water	SedimentProperties	BIOTURBATION_COEF	Bioturbation diffusion coefficient
Water	SedimentProperties	BIOTURBATION_DECAY_COEF	Decay factor to compute decay of bioturbation effect
Water	SedimentProperties	BIOTURBATION_DEPTH	Depth till which bioturbation diffusion is constant (m)
Water	SedimentProperties	BOX_TIME_SERIE	Ouputs results in box time series
Water	SedimentProperties	BOXFLUXES	Path to boxes file. If specified in input data file, computes box integration based on the defined file.
Water	SedimentProperties	DESCRIPTION	Brief description of the property
Water	SedimentProperties	DIFFUSION_METHOD	Method to compute diffusion coefficient correction for the sediments	1	Berner, 1980
				2	Soetaert, 1996
Water	SedimentProperties	IS_COEF	Conversion factor to I.S. units
Water	SedimentProperties	MIN_VALUE	Minimum allowed value of property concentration
Water	SedimentProperties	MOLECULAR_DIFF_COEF	Infinite dilution molecular diffusion coefficient
Water	SedimentProperties	NAME	Property name
Water	SedimentProperties	OLD	Initialization from previous run (overrides FillMatrix)
Water	SedimentProperties	OUTPUT_HDF	Ouputs results in HDF5 format
Water	SedimentProperties	OUTPUT_TIME	Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water	SedimentProperties	PARTICULATE	Property physical state: 0 - Dissolved ; 1 - Particulate
Water	SedimentProperties	PARTITION	Compute partition between dissolved-particulate phases
Water	SedimentProperties	PARTITION_COUPLE	Name of the property (oposite phase) to compute partition
Water	SedimentProperties	SEDIMENT_QUALITY	Compute sediment quality processes
Water	SedimentProperties	SURFACE_FLUXES	Compute fluxes at the sediment surface
Water	SedimentProperties	TIME_SERIE	Output time series for sediment property
Water	SedimentProperties	TIME_SERIE_LOCATION	Path to time serie locations file
Water	SedimentProperties	UNITS	Property units

Module Turbine

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Turbine	CD	Drag coef for the structure		Not yet implemented
Water	Turbine	CP	Power coefficient value. Power coefficient that quantifies the amount of power extracted from the flow	0-1	percentage between 0 and 1			Real
Water	Turbine	CT	Thrust coefficient value. Power coefficient that quantifies the forced exerted by the turbine to the flow	0-1	percentage between 0 and 1			Real
Water	Turbine	DIAMETER	Device diameter length				m	Real
Water	Turbine	HEIGHT	The heigh of the centre of the turbine respect the floor				m	Real
Water	Turbine	LOWER_VEL	Cut-in speed. The minimum speed at which the device starts working			0	m/s	Real
Water	Turbine	POS_LAT	Latitude position in geographic coordinates or y position in metric coordinates.					Real
Water	Turbine	POS_LONG	Longitude position in geographic coordinates and x position in metric coordinates.					Real
Water	Turbine	TIMESERIE	Activates the timeserie module and prints the output data of the turbine	0/1	activates the ouput data			Boolean
Water	Turbine	UPPER_VEL	Design speed.			10	m/s	Real
Water	Turbine	WIDTH_STRUCT	Width of the structure		Not yet implemented

Module Turbulence

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Turbulence	BACKGROUND_VISCOSITY	Background viscosity/diffusivity.
Water	Turbulence	CONST_MIXING_LENGTH_HORIZONTAL	Default horizontal mixing length. Used to compute the random trajectory of particle (Lagrangian Module
Water	Turbulence	CONTINUOUS	Check if the user wants to perform a simulation startinf from a previous run (1) or not (0).
Water	Turbulence	DT_OUTPUT_TIME	Time interval for time serie.
Water	Turbulence	HORCON	Smaagorinsky coefficient. Used only if MODVISH is "smagorinsky".
Water	Turbulence	HREF_VIS	Water column reference thickness used in the for the option MODVISH "estuary".
Water	Turbulence	MIXLENGTH_MAX	Maximum allowed mixing length. Parameter used in the Nihoul and Leendertse parameterization.
Water	Turbulence	MIXLENGTH_V	Default vertical mixing length. Used to compute the random trajectory of particle (Lagrangian Module).
Water	Turbulence	MLD	Checks out if the user pretends to compute the mixed layer length (1) or not (0).
Water	Turbulence	MLD_BOTTOM	Checks out if the user pretends to compute the bottom mixed layer length (1) or not (0).
Water	Turbulence	MLD_Method		1	Turbulent kinetic energy (TKE) inferior to a predefined minimum.
				2	Richardson number (Ri) superior to a critical value.
				3	Maximum value of Brunt-Vaisalla frequency (N)
Water	Turbulence	MODTURB	Vertical eddy viscosity model	backhaus	Uses Backhaus turbulence scheme.
				constant	Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing.
				file2D	Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
				leendertsee	Uses Leendertsee turbulence scheme.
				nihoul	Uses Nihoul turbulence scheme.
				pacanowski	Uses Pacanowski turbulence scheme.
				turbulence_equation	Uses a turbulence equation for closure. This is only to be used with GOTM module.
Water	Turbulence	MODVISH	Horizontal eddy viscosity model.	constant	Constant horizontal viscosity
				estuary
				file2D	Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
				smagorinsky	Smagorinsky turbulence scheme.
Water	Turbulence	NYQUIST	Nyquist frequency used for mixing length calculation.
Water	Turbulence	OUTPUT_PROFILE	Perform profile outputs in HDF5
Water	Turbulence	OUTPUT_TIDE	Checks out if the user pretends to write tidal information in HDF output (1) or not (0).
Water	Turbulence	OUTPUT_TIME	Intrevals of time between outputs.
Water	Turbulence	PRANDTL_0	Vertical Prandtl number
Water	Turbulence	RESTART_FILE_OVERWRITE	Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water	Turbulence	RICH_MLD	Ri used to compute the surface mixing length based on the Ri number.
Water	Turbulence	STATISTICS_MLD	Checks out if the user pretends to output statics for the surface mixing length (1) or not (0).
Water	Turbulence	STATISTICS_MLD_FILE	File name for output statistics of surface mixing length.
Water	Turbulence	TIME_SERIE	Checks out if the user pretends to write time series of this property (1) or not (0).
Water	Turbulence	TIME_SERIE_LOCATION	Path to time serie location file
Water	Turbulence	TKE_MLD	TKE limit used to compute the surface mixing length based on the TKE.
Water	Turbulence	VISCOSITY_H	Default horizontal viscosity.
Water	Turbulence	VISCOSITY_V	Default vertical viscosity.
Water	Turbulence	VISH_REF	Horizontal viscosity used as the minimum value for viscosity if MODVISH is either "estuary" or "smagorinsky".
Water	Turbulence	VREF_VIS	Reference velocity used if MODVISH is "estuary".

Module WaterProperties

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	WaterProperties	ADV_DIF_NUM_STABILITY	Verifies advection-diffusion numerical stability for this property.
Water	WaterProperties	ADV_METHOD_H	Horizontal advection discretization.	1	UpwindOrder1
				2	UpwindOrder2
				3	UpwindOrder3
				4	P2_TVD
				5	CentralDif
Water	WaterProperties	ADV_METHOD_V	Vertical advection discretization.	1	UpwindOrder1
				2	UpwindOrder2
				3	UpwindOrder3
				4	P2_TVD
				5	CentralDif
Water	WaterProperties	ADVECTION_DIFFUSION	Property transported by advection and diffusion.
Water	WaterProperties	ADVECTION_H_IMP_EXP	Horizontal advection computed using a implicit/explicit discretization for this property.	0	Implicit discretization
				1	Explicit discretization
Water	WaterProperties	ADVECTION_V_IMP_EXP	Vertical advection computed using a implicit/explicit discretization for this property.	0	Implicit discretization.
				1	Explicit discretization.
Water	WaterProperties	AGE_USING_WATERPOINTS	Compute age using Waterpoints. If FALSE then age is computed using Openpoints.
Water	WaterProperties	ALTITUDE
Water	WaterProperties	BOTTOM_FLUXES	This property has bottom fluxes
Water	WaterProperties	BOUNDARY_CONDITION	Boundary condition for this property.	1	MassConservation
				2	ImposedValue
				3	VerticalDiffusion
				4	NullGradient
				5	SubModel
				6	Orlanski
				7	MassConservation + NullGradient
				8	CyclicBoundary
Water	WaterProperties	BOUNDARY_INITIALIZATION	Processes considered to initialize the boundary values of this property	EXTERIOR	A value exterior to the domain is be imposed (a constant value).
				INTERIOR	Boundaries equal to the values given in the same cells during the domain initialization.
Water	WaterProperties	BOX_TIME_SERIE	Checks to see if the user pretends to write a time serie inside each box for this property
Water	WaterProperties	BOXFLUXES	Path to the file with the boxes definitions.
Water	WaterProperties	CEQUALW2	This property has CEQUALW2 model as a sink and source
Water	WaterProperties	DATA_ASSIMILATION	Data assimilation scheme
Water	WaterProperties	DECAY_TIME	Decay time of this property in the boundary.	0	Property value at the boundary remains constant.
Water	WaterProperties	DEFAULTBOUNDARY	The default value of a specific water property imposed in the open boundary
Water	WaterProperties	DENSITY_METHOD	Method to compute water density	1	Leendertse
				2	UNESCO (in situ temperature)
				3	Linear
				4	Mellor 1996
				5	Jackett and McDougall 1995
Water	WaterProperties	DESCRIPTION	Description of this property
Water	WaterProperties	DIFFUSION_V_IMP_EXP	Vertical diffusion computed using a implicit/explicit discretization for this property.	0	Implicit discretization.
				1	Explicit discretization.
Water	WaterProperties	DISCHARGES	Property is discharged.
Water	WaterProperties	DISCHARGES_TRACKING	This property writes discharges as time serie
Water	WaterProperties	DOSAT_TYPE	Method to compute dissolved oxygen saturation	1	Apha
				2	Henry
				3	Mortimer
Water	WaterProperties	DT_INTERVAL	DT to compute this property evolution. Only defined if no advection_difusion or sink and source model chosen
Water	WaterProperties	EMPIRIC_COEF
Water	WaterProperties	EXTINCTION_PARAMETER	Parameter that multiplies by this property concentration to compute light extinction when SW_EXTINCTION_TYPE:6 (multiparameter option)
Water	WaterProperties	FILTRATION	Compute filtration process as a sink
Water	WaterProperties	FIRSTPROP	First Property defined in a WQ rate relation
Water	WaterProperties	FREE_CONVECTION	Option to mix instable density profiles
Water	WaterProperties	INSTANT_MIXING	This option mix instantaneously the all water column for this property
Water	WaterProperties	IS_COEF	Conversion factor between IS units and the user defined units for this property
Water	WaterProperties	LIFE	This property has Life model as a sink and source
Water	WaterProperties	LIGHT_EXTINCTION	Check if this property is used to compute light extinction when SW_EXTINCTION_TYPE : 6 (multiparameter)
Water	WaterProperties	MACROALGAE	Defines if property is included in macroalgae biogeochemical processes
Water	WaterProperties	MACROALGAE_HEIGHT	Macroalgae reference height
Water	WaterProperties	MACROALGAE_MASS	Initial distribution of macroalgae attached to the bottom
Water	WaterProperties	MAX_VALUE	Maximum allowed value of property concentration
Water	WaterProperties	MIN_VALUE	Mininum value of this property
Water	WaterProperties	MODEL	Name of the biogeochemical to which the rate belongs
Water	WaterProperties	NAME	Name of this property
Water	WaterProperties	NAME	Rate name ex: PhyZoo
Water	WaterProperties	NULLDIF	Consider null diffusion of this property if velocities are null.
Water	WaterProperties	OLD	Check if user wants to continue the run with results of a previous run.
Water	WaterProperties	OUTPUT_HDF	Check to see if this property is to be written in the HDF file.
Water	WaterProperties	OUTPUT_PROFILE	Perform profile outputs in HDF5 format
Water	WaterProperties	OUTPUT_TIME	Output times for HDF output file
Water	WaterProperties	PARTICULATE	Checks if the user wants this property to be particulate
Water	WaterProperties	PARTITION	This property has partition as a sink and source
Water	WaterProperties	PARTITION_COUPLE	Name of property (dissolved/particulated) to couple this property
Water	WaterProperties	PARTITION_FRACTION
Water	WaterProperties	PARTITION_RATE
Water	WaterProperties	PRESSURE_CORRECTION	Check to see if Pressure correction is going to be computed.
Water	WaterProperties	RATIO_C_CHLA	Plankton Carbon/Chlorophyll Ratio
Water	WaterProperties	REFERENCE_DENSITY	Reference water density
Water	WaterProperties	REFERENCE_SPECIFICHEAT	Specific heat reference of water. seawater in GOTM - 3985 J/kg/ºC Freshwater in Chapra - 4180 J/kg/ºC
Water	WaterProperties	RESTART_FILE_OUTPUT_TIME	Output Time to write restart files
Water	WaterProperties	RESTART_FILE_OVERWRITE	Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water	WaterProperties	SALINITY_EFFECT	Compute partition coefficient between the particulate and the dissolved phase as a function of salinity, for this property
Water	WaterProperties	SCHMIDT_BACKGROUND_V	see SCHMIDT_COEF_V.
Water	WaterProperties	SCHMIDT_COEF_V	Schmidt number for the vertical.
Water	WaterProperties	SCHMIDT_NUMBER_H	Schmidt number for the horizontal.
Water	WaterProperties	SECONDPROP	Second property defined in a WQ rate relation
Water	WaterProperties	SED_REF_CONC	Reference cohesive sediment concentration to use in this property
Water	WaterProperties	SIMPLE_OUTPUT	HDF outputs include only the basic properties	0/1	Inactive/Active	1		Boolean
Water	WaterProperties	SIMPLE_WINDOW_OUTPUT	HDF window outputs include only the basic properties	0/1	Inactive/Active	1		Boolean
Water	WaterProperties	SMALLDEPTH_LIMIT	Water column thickness below which homogeneous water properties is assumed.
Water	WaterProperties	SPECIFICHEAT_METHOD	Method for Specific Heat	2	Uses the UNESCO state equation described in Millero et al. 1978
Water	WaterProperties			3	Uses the referenced value
Water	WaterProperties	STATISTICS	Checks to see if the user pretends the statistics of this property
Water	WaterProperties	STATISTICS_FILE	Path to the file that has the statistics definitions
Water	WaterProperties	SUBMODEL	Property is influenced by a father model
Water	WaterProperties	SUBMODEL_INI	Property is initialized as being part of a sub model
Water	WaterProperties	SURFACE_FLUXES	This property has surface fluxes
Water	WaterProperties	TIME_SERIE	Check to see if this property is to be written as time series.
Water	WaterProperties	TIME_SERIE_LOCATION	Path to the file that as time series definitions
Water	WaterProperties	TVD_LIMIT_H	Horizontal TVD limitation	1	MinMod
				2	VanLeer
				3	Muscl
				4	Superbee
				5	PDM
Water	WaterProperties	TVD_LIMIT_V	Vertical TVD limitation	1	MinMod
				2	VanLeer
				3	Muscl
				4	Superbee
				5	PDM
Water	WaterProperties	UNITS	Units of this property
Water	WaterProperties	USE_SED_REF_CONC	Use Reference cohesive sediment concentration method for this property Partition sink and source model
Water	WaterProperties	VERTICAL_MOVEMENT	This property has free vertical movement.
Water	WaterProperties	VOLUME_RELATION_MAX	The relation between adjacent volumes above which the advection is upwind, for this property.
Water	WaterProperties	WARN_ON_NEGATIVE_VALUES	Write a warning to screen when property has negative value
Water	WaterProperties	WATER_QUALITY	This property has Water Quality Model as a sink and source

Module Waves

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Water	Waves	DISTANCE_TO_LAND_METHOD	Chooses 1 of 2 methods to compute Distances to Land. if keyword value = 1 (one) computes distances according to a "graphical" method between points and land polygons. If keyword = 0 (zero) computes distances with a method based on grid.
Water	Waves	RADIATION_TENSION_X	Compute/read radiation stress in XX direction
Water	Waves	RADIATION_TENSION_Y	Compute/read radiation stress in Y direction
Water	Waves	REMAIN_CONSTANT
Water	Waves	WAVE_DIRECTION	Compute/read wave direction
Water	Waves	WAVE_HEIGHT	Compute/read wave height
Water	Waves	WAVE_HEIGHT_PARAMETER	Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave height calibration.
Water	Waves	WAVE_PERIOD	Compute/read wave period
Water	Waves	WAVE_PERIOD_PARAMETER	Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave period calibration.
Water	Waves	WAVEGEN_TYPE	Chooses 1 of 2 methods to compute Wave Height and Wave Period. If keyword value equals 0 (zero), WaveHeight and WavePeriod are computed as originaly (wind modulus dependent). If value equals 1 (one), computes as CEQUAL-W2 way (wind, depth and Fetch dependent).
Water	Waves	WINDROSE_DIRECTIONS	Number of wind directions for fetch calculation.

MOHID Tools

Valida4D

Source Code

Project	Module	Keyword	Keyword description	Options	Option description	Default Value	Units	Type
Valida4D	ModuleValida4D	INPUT_TABLE