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Line 7: Line 7:
  
 
|-
 
|-
−
! scope="col" |Project
 
−
! scope="col" |Module
 
 
! scope="col" |Keyword
 
! scope="col" |Keyword
 
! scope="col" |Keyword description
 
! scope="col" |Keyword description
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|BIOSI_DECAY_RATE
 
|BIOSI_DECAY_RATE
 
|Biogenic silica dissolution rate
 
|Biogenic silica dissolution rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|DIATOMS
 
|DIATOMS
 
|Compute diatoms mortality
 
|Compute diatoms mortality
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|DIATOMS_MORTALITY
 
|DIATOMS_MORTALITY
 
|Diatoms mortality rate when deposited
 
|Diatoms mortality rate when deposited
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|DIATOMS_NC_RATIO
 
|DIATOMS_NC_RATIO
 
|Diatoms Nitrogen/Carbon ratio
 
|Diatoms Nitrogen/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|DIATOMS_PC_RATIO
 
|DIATOMS_PC_RATIO
 
|Diatoms Phosphorus/Carbon ratio
 
|Diatoms Phosphorus/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|DIATOMS_SIC_RATIO
 
|DIATOMS_SIC_RATIO
 
|Diatoms Silica/Carbon ratio
 
|Diatoms Silica/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|DT
 
|DT
 
|Time step to compute benthic biogeochemical processes
 
|Time step to compute benthic biogeochemical processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|MIN_OXYGEN
 
|MIN_OXYGEN
 
|Minimum oxygen concentration for mineralization to occur
 
|Minimum oxygen concentration for mineralization to occur
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|NC_RATIO
 
|NC_RATIO
 
|Nitrogen/Carbon ratio of organic matter
 
|Nitrogen/Carbon ratio of organic matter
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|NITROGEN
 
|NITROGEN
 
|Compute nitrogen processes
 
|Compute nitrogen processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|OXYGEN
 
|OXYGEN
 
|Compute oxygen processes
 
|Compute oxygen processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PC_RATIO
 
|PC_RATIO
 
|Phosphorus/Carbon ratio of organic matter
 
|Phosphorus/Carbon ratio of organic matter
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
| rowspan="2" |PELAGIC_MODEL
 
| rowspan="2" |PELAGIC_MODEL
 
| rowspan="2" |Pelagic model name to which Module Benthos will be coupled
 
| rowspan="2" |Pelagic model name to which Module Benthos will be coupled
 
|LifeModel
 
|LifeModel
 
|
 
|
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|WaterQuality  
 
|WaterQuality  
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PHOSPHORUS
 
|PHOSPHORUS
 
|Compute phosphorus processes
 
|Compute phosphorus processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PHYTO
 
|PHYTO
 
|Compute phytoplankton mortality
 
|Compute phytoplankton mortality
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PHYTO_MORTALITY
 
|PHYTO_MORTALITY
 
|Phytoplankton mortality rate when deposited
 
|Phytoplankton mortality rate when deposited
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PHYTO_NC_RATIO
 
|PHYTO_NC_RATIO
 
|Phytoplankton Nitrogen/Carbon ratio
 
|Phytoplankton Nitrogen/Carbon ratio
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Base 1
+
|
−
|Benthos
+
|
 +
|-
 
|PHYTO_PC_RATIO
 
|PHYTO_PC_RATIO
 
|Phytoplankton Nitrogen/Carbon ratio
 
|Phytoplankton Nitrogen/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PON_DECAY_RATE
 
|PON_DECAY_RATE
 
|Particulate organic nitrogen mineralization rate
 
|Particulate organic nitrogen mineralization rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|PON_DECAY_TFACTOR
 
|PON_DECAY_TFACTOR
 
|Particulate Organic Nitrogen temperature influence factor in mineralization Rate
 
|Particulate Organic Nitrogen temperature influence factor in mineralization Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|POP_DECAY_RATE
 
|POP_DECAY_RATE
 
|Particulate organic phosphorus mineralization rate  
 
|Particulate organic phosphorus mineralization rate  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|POP_DECAY_TFACTOR
 
|POP_DECAY_TFACTOR
 
|Particulate Organic Phosphorus temperature influence factor in mineralization Rate
 
|Particulate Organic Phosphorus temperature influence factor in mineralization Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
 
−
|Benthos
 
 
|SILICA
 
|SILICA
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 184: Line 205:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleCEQUALW2.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleCEQUALW2.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 192: Line 212:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 197: Line 220:
 
|DTSECONDS
 
|DTSECONDS
 
|time step, in seconds, between two CEQUALW2 calls
 
|time step, in seconds, between two CEQUALW2 calls
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 204: Line 230:
 
|NAME
 
|NAME
 
|Algae Property name as defined on Module GlobalData
 
|Algae Property name as defined on Module GlobalData
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module Discharges===
 
=== Module Discharges===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDischarges.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDischarges.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 218: Line 247:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 223: Line 255:
 
|ALTERNATIVE_LOCATIONS
 
|ALTERNATIVE_LOCATIONS
 
|Activates the automatic search for alternative locations, when the discharge point is not a covered point
 
|Activates the automatic search for alternative locations, when the discharge point is not a covered point
 +
|0/1
 +
|Inactive/Active
 +
|0
 +
|
 +
|Boolean
 +
|-
 +
| Base 1
 +
|Discharges
 +
|COORD_X
 +
|Longitude of the discharge in geographic coordinates
 +
|
 +
|
 +
|
 +
|
 +
|Real
 +
|-
 +
| Base 1
 +
|Discharges
 +
|COORD_Y
 +
|Activates the automatic search for alternative locations, when the discharge point is not a covered point
 +
|Latitude of the discharge in geographic coordinates
 
|
 
|
 
|
 
|
 +
|
 +
|Real
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 230: Line 285:
 
|CREST_HEIGTH
 
|CREST_HEIGTH
 
|Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
 
|Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 237: Line 295:
 
|DATA_BASE_FILE
 
|DATA_BASE_FILE
 
|Definition of the data base time series file. If there is one, model assumes that the discharge is time variable
 
|Definition of the data base time series file. If there is one, model assumes that the discharge is time variable
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 244: Line 305:
 
|DEFAULT_FLOW_VALUE
 
|DEFAULT_FLOW_VALUE
 
|Default flow value
 
|Default flow value
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 253: Line 317:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Base 1
 
| Base 1
 
|Discharges
 
|Discharges
 
|DEFAULTVALUE
 
|DEFAULTVALUE
 
|Water property value
 
|Water property value
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 265: Line 335:
 
|DESCRIPTION
 
|DESCRIPTION
 
|Discharge description
 
|Discharge description
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|Discharges
 +
|DISCHARGE_UNIFORM
 +
|
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 273: Line 356:
 
|Column where the flow is defined in the data base time series file
 
|Column where the flow is defined in the data base time series file
 
|
 
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
| rowspan="3" |Base 1
 +
| rowspan="3" |Discharges
 +
| rowspan="3" |FLOW_DISTRIBUTION
 +
| rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation
 +
|by cell
 +
|
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
|-
 +
|by water column
 +
|
 +
|-
 +
|by volume
 
|
 
|
 
|-
 
|-
Line 281: Line 383:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|Discharges
 +
|IGNORE_ON
 +
|This keyword must be active for MOHID MPI runs
 +
|0/1
 +
|Inactive/Active
 +
|0
 +
|
 +
|Boolean
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 288: Line 403:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|Integer
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 295: Line 413:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|Integer
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 302: Line 423:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|Integer
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 307: Line 431:
 
|NAME
 
|NAME
 
|Discharge name
 
|Discharge name
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 314: Line 441:
 
|NODE_ID
 
|NODE_ID
 
|ID of the discharge, when it isn't grid-based
 
|ID of the discharge, when it isn't grid-based
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 321: Line 451:
 
|TIME_SERIE_COLUMN
 
|TIME_SERIE_COLUMN
 
|This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series.
 
|This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 328: Line 461:
 
|U_COLUMN
 
|U_COLUMN
 
|This keyword is used to give to model the column where the velocity X is defined in the data base time series file
 
|This keyword is used to give to model the column where the velocity X is defined in the data base time series file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 337: Line 473:
 
|
 
|
 
|
 
|
−
|-
 
−
| Base 1
 
−
|Discharges
 
−
|WEIR_COEF
 
−
|Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
 
 
|
 
|
 
|
 
|
 +
|
 +
|-
 +
| rowspan="5" |Base 1
 +
| rowspan="5" |Discharges
 +
| rowspan="5" |VERTICAL_DISCHARGE
 +
| rowspan="5" |Serves to specify the discharge distribution in the vertical direction
 +
|1
 +
|discharge in the bottom cell
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Base 1
+
|2
 +
|discharge in the surface cell
 +
|-
 +
|3
 +
|discharge in the cell that intersects the depth defined in the keyword K_DEPTH (no default value)
 +
|-
 +
|4
 +
|discharge in the layer defined in the keyword K_CELL (no default value)
 +
|-
 +
|5
 +
|Assumes a uniform distribution along the entire water column
 +
|-
 +
| Base 1
 +
|Discharges
 +
|WEIR_COEF
 +
|Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
| Base 1
 
|Discharges
 
|Discharges
 
|WEIR_LENGTH
 
|WEIR_LENGTH
 
|Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
 
|Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module DrainageNetwork===
 
=== Module DrainageNetwork===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDrainageNetwork.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDrainageNetwork.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 363: Line 530:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 368: Line 538:
 
|ADVECTION_DIFUSION
 
|ADVECTION_DIFUSION
 
|Compute advection and diffusion of property
 
|Compute advection and diffusion of property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
+
| rowspan="2" |Base 1
−
|DrainageNetwork
+
| rowspan="2" |DrainageNetwork
 
| rowspan="2" |ADVECTION_SCHEME
 
| rowspan="2" |ADVECTION_SCHEME
 
| rowspan="2" |Numerical Discretization of Advection.
 
| rowspan="2" |Numerical Discretization of Advection.
 
|1
 
|1
 
|UpwindOrder1 (Upwind scheme of 1st order)
 
|UpwindOrder1 (Upwind scheme of 1st order)
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|5
 
|5
 
|CentralDif (Central differences scheme)
 
|CentralDif (Central differences scheme)
Line 387: Line 561:
 
|CHECK_NODES
 
|CHECK_NODES
 
|Check nodes consistency in the drainage network file
 
|Check nodes consistency in the drainage network file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 394: Line 571:
 
|CHECK_REACHES
 
|CHECK_REACHES
 
|Check reaches consistency in the drainage network file (a reach connects 2 nodes)
 
|Check reaches consistency in the drainage network file (a reach connects 2 nodes)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 401: Line 581:
 
|CONTINUOUS
 
|CONTINUOUS
 
|Computations follow from another simulation
 
|Computations follow from another simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 408: Line 591:
 
|DATA_COLUMN
 
|DATA_COLUMN
 
|Number of column in the time series file with the downstream water depth values
 
|Number of column in the time series file with the downstream water depth values
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 415: Line 601:
 
|DEFAULT_VALUE
 
|DEFAULT_VALUE
 
|Default value for water depth at the downstream boundary condition
 
|Default value for water depth at the downstream boundary condition
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 422: Line 611:
 
|DEFAULT_VALUE
 
|DEFAULT_VALUE
 
|Default value for this property. Also used as initial value.
 
|Default value for this property. Also used as initial value.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 429: Line 621:
 
|DESCRIPTION
 
|DESCRIPTION
 
|Description of property
 
|Description of property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 438: Line 633:
 
|5
 
|5
 
|CentralDif (Central Differences discretization)
 
|CentralDif (Central Differences discretization)
 +
|
 +
|
 +
|
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 443: Line 641:
 
|DIFFUSIVITY
 
|DIFFUSIVITY
 
|Diffusivity of property
 
|Diffusivity of property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 450: Line 651:
 
|DISCHARGES
 
|DISCHARGES
 
|Use module discharges
 
|Use module discharges
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
+
| rowspan="5" |Base 1
−
|DrainageNetwork
+
| rowspan="5" |DrainageNetwork
 
| rowspan="5" |DOWNSTREAM_BOUNDARY
 
| rowspan="5" |DOWNSTREAM_BOUNDARY
 
| rowspan="5" |Choose downstream boundary condition
 
| rowspan="5" |Choose downstream boundary condition
 
|0
 
|0
 
|Dam (flow at the outlet = 0.0)
 
|Dam (flow at the outlet = 0.0)
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|1
 
|1
 
|Normal (solves KynematicWave at the outlet)
 
|Normal (solves KynematicWave at the outlet)
 
|-
 
|-
−
| Base 1
+
|2
−
|DrainageNetwork
 
−
|2
 
 
|ImposedWaterDepth
 
|ImposedWaterDepth
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|3
 
|3
 
|ImposedWaterLevel
 
|ImposedWaterLevel
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|4
 
|4
 
|ImposedVelocity
 
|ImposedVelocity
 
|-
 
|-
−
| Base 1
+
| rowspan="2" |Base 1
−
|DrainageNetwork
+
| rowspan="2" |DrainageNetwork
 
| rowspan="2" |FILE_IN_TIME
 
| rowspan="2" |FILE_IN_TIME
 
| rowspan="2" |Downstream boundary condition evolution
 
| rowspan="2" |Downstream boundary condition evolution
 
|NONE
 
|NONE
 
|Constant evolution of downstream boundary condition (constant water depth)
 
|Constant evolution of downstream boundary condition (constant water depth)
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|TIMESERIE
 
|TIMESERIE
 
|Reads a time series with water depth for downstream boundary condition
 
|Reads a time series with water depth for downstream boundary condition
Line 496: Line 696:
 
|FILENAME
 
|FILENAME
 
|Path to the file with the downstream water depth time serie values
 
|Path to the file with the downstream water depth time serie values
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 503: Line 706:
 
|GLOBAL_MANNING
 
|GLOBAL_MANNING
 
|Assigns a Manning rugosity coefficient to all the drainage network channels
 
|Assigns a Manning rugosity coefficient to all the drainage network channels
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 1
+
| rowspan="3" |Base 1
−
|DrainageNetwork
+
| rowspan="3" |DrainageNetwork
 
| rowspan="3" |HYDRODYNAMIC_APROX
 
| rowspan="3" |HYDRODYNAMIC_APROX
 
| rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation
 
| rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation
 
|1
 
|1
 
|KinematicWave (friction = slope gradient)
 
|KinematicWave (friction = slope gradient)
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|2
 
|2
 
|DiffusionWave (full St Venant equation except for advection)
 
|DiffusionWave (full St Venant equation except for advection)
 
|-
 
|-
−
| Base 1
 
−
|DrainageNetwork
 
 
|3
 
|3
 
|DynamicWave (full St Venant equation)
 
|DynamicWave (full St Venant equation)
Line 527: Line 732:
 
|INITIAL_WATER_DEPTH
 
|INITIAL_WATER_DEPTH
 
|Assigns an initial water depth to all channels. only if continuous computation is not chosen.
 
|Assigns an initial water depth to all channels. only if continuous computation is not chosen.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 536: Line 744:
 
|CONSTANT
 
|CONSTANT
 
|Constant initialization of property
 
|Constant initialization of property
 +
|
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|DrainageNetwork
 +
|LIMIT_DT_COURANT
 +
|Connect/disconnect limitation of dt by courant number
 +
|0/1
 +
|Inactive/Active
 +
|0
 +
|
 +
|Boolean
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 541: Line 762:
 
|MIN_VALUE
 
|MIN_VALUE
 
|Minimum concentration of property.
 
|Minimum concentration of property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 548: Line 772:
 
|MIN_WATER_DEPTH
 
|MIN_WATER_DEPTH
 
|Minimum water column for computations
 
|Minimum water column for computations
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 555: Line 782:
 
|NAME
 
|NAME
 
|Name of property
 
|Name of property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 562: Line 792:
 
|NETWORK_FILE
 
|NETWORK_FILE
 
|Path to the file that describes nodes and reaches
 
|Path to the file that describes nodes and reaches
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 569: Line 802:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Output of property values in time series files.
 
|Output of property values in time series files.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 576: Line 812:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to the file that has the time series location characteristics
 
|Path to the file that has the time series location characteristics
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 585: Line 824:
 
|
 
|
 
|
 
|
−
|-
 
−
| Base 1
 
−
|DrainageNetwork
 
−
|XS_CALC
 
−
|Method to compute trapezoidal cross section (1 - Analytic; 2 - Discretization dH)
 
 
|
 
|
 
|
 
|
 +
|
 +
|-
 +
| rowspan="2" |Base 1
 +
| rowspan="2" |DrainageNetwork
 +
| rowspan="2" |XS_CALC
 +
| rowspan="2" |Method to compute trapezoidal cross section
 +
|1
 +
|Analytic
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
|-
 +
|2
 +
|Discretization dH
 
|}
 
|}
  
Line 597: Line 845:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLife.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLife.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 605: Line 852:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 610: Line 860:
 
|AFFINITY_NH4
 
|AFFINITY_NH4
 
|Affinity for NH4 uptake
 
|Affinity for NH4 uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 617: Line 870:
 
|AFFINITY_NO3
 
|AFFINITY_NO3
 
|Affinity for NO3 uptake
 
|Affinity for NO3 uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 624: Line 880:
 
|AFFINITY_PO4
 
|AFFINITY_PO4
 
|Affinity for PO4 uptake
 
|Affinity for PO4 uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 631: Line 890:
 
|ALPHA_CHL
 
|ALPHA_CHL
 
|Chl specific initial slop of P vs I curve
 
|Chl specific initial slop of P vs I curve
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 638: Line 900:
 
|ASS_EFFIC
 
|ASS_EFFIC
 
|Assimilation efficiency
 
|Assimilation efficiency
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 645: Line 910:
 
|ASS_EFFIC_LOW_O2
 
|ASS_EFFIC_LOW_O2
 
|Assimilation efficiency @ low O2
 
|Assimilation efficiency @ low O2
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 652: Line 920:
 
|ASSIMIL_EFFIC
 
|ASSIMIL_EFFIC
 
|Assimilation efficiency
 
|Assimilation efficiency
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 659: Line 930:
 
|BIO_SI_DISS
 
|BIO_SI_DISS
 
|Biogenic silica dissolution rate
 
|Biogenic silica dissolution rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 666: Line 940:
 
|CHL_DEGRAD_RATE
 
|CHL_DEGRAD_RATE
 
|Chla degradation rate constant
 
|Chla degradation rate constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 673: Line 950:
 
|DENS_DEP_MORT
 
|DENS_DEP_MORT
 
|Density-dependence mortality rate
 
|Density-dependence mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 679: Line 959:
 
|Life
 
|Life
 
|DOM_UP_KS
 
|DOM_UP_KS
−
|Half saturation value for DOM uptake    
+
|Half saturation value for DOM uptake
−
 
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 688: Line 970:
 
|DOMSL_BAC_KS
 
|DOMSL_BAC_KS
 
|Bacteria mediated DOMsl Hydrolysis
 
|Bacteria mediated DOMsl Hydrolysis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 695: Line 980:
 
|DOMSL_BAC_VMAX
 
|DOMSL_BAC_VMAX
 
|Vmax for DOMsl Hydrolysis
 
|Vmax for DOMsl Hydrolysis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 702: Line 990:
 
|EXC_DOM_SL_FRAC
 
|EXC_DOM_SL_FRAC
 
|DOM diverted to semi-labile pool
 
|DOM diverted to semi-labile pool
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 709: Line 1,000:
 
|EXCRE_UP_FRAC
 
|EXCRE_UP_FRAC
 
|Excreted fraction of uptake
 
|Excreted fraction of uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 716: Line 1,010:
 
|EXU_NUT_STRESS
 
|EXU_NUT_STRESS
 
|Exudation under nutrient stress
 
|Exudation under nutrient stress
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 723: Line 1,020:
 
|GRAZ_AVAIL
 
|GRAZ_AVAIL
 
|Availability of Prey X
 
|Availability of Prey X
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 730: Line 1,030:
 
|GRAZ_UP_KS
 
|GRAZ_UP_KS
 
|Half saturation value for uptake
 
|Half saturation value for uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 737: Line 1,040:
 
|LIGHT_LIM_METHOD
 
|LIGHT_LIM_METHOD
 
|Light limitation method
 
|Light limitation method
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 744: Line 1,050:
 
|LYS_REF_CON
 
|LYS_REF_CON
 
|Lysis_Ref_Con     
 
|Lysis_Ref_Con     
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 751: Line 1,060:
 
|MASS_XEK
 
|MASS_XEK
 
|Command to make a mass conservation test
 
|Command to make a mass conservation test
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 758: Line 1,070:
 
|MAX_ASSIMIL
 
|MAX_ASSIMIL
 
|Maximal assimilation rate
 
|Maximal assimilation rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 765: Line 1,080:
 
|MAX_CHLN_RATIO
 
|MAX_CHLN_RATIO
 
|Maximal Chl:N ratio
 
|Maximal Chl:N ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 772: Line 1,090:
 
|MAX_NC_RATIO
 
|MAX_NC_RATIO
 
|Maximal N:C ratio
 
|Maximal N:C ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 779: Line 1,100:
 
|MAX_PC_RATIO
 
|MAX_PC_RATIO
 
|Maximal P:C ratio
 
|Maximal P:C ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 786: Line 1,110:
 
|MAX_SPEC_UP_@10C
 
|MAX_SPEC_UP_@10C
 
|Maximum specific uptake @ 10ºC
 
|Maximum specific uptake @ 10ºC
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 793: Line 1,120:
 
|MAX_STORE_FILL
 
|MAX_STORE_FILL
 
|Maximal rate of storage filling
 
|Maximal rate of storage filling
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 800: Line 1,130:
 
|MIN_LYSIS
 
|MIN_LYSIS
 
|Minimal lysis rate
 
|Minimal lysis rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 807: Line 1,140:
 
|MIN_NC_RATIO
 
|MIN_NC_RATIO
 
|Minimal N:C ratio
 
|Minimal N:C ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 814: Line 1,150:
 
|MIN_PC_RATIO
 
|MIN_PC_RATIO
 
|Minimal P:C ratio
 
|Minimal P:C ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 821: Line 1,160:
 
|MIXOTROPHY
 
|MIXOTROPHY
 
|Hability to perform mixotrophy
 
|Hability to perform mixotrophy
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 828: Line 1,170:
 
|MORT_DOM_SL_FRAC
 
|MORT_DOM_SL_FRAC
 
|DOC_SL_Frac   
 
|DOC_SL_Frac   
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 835: Line 1,180:
 
|MORT_O2_DEP
 
|MORT_O2_DEP
 
|Oxygen-dependent mortality rate
 
|Oxygen-dependent mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 842: Line 1,190:
 
|MORT_POM_FRAC
 
|MORT_POM_FRAC
 
|Fraction of mortality to POM
 
|Fraction of mortality to POM
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 849: Line 1,200:
 
|MORT_RATE
 
|MORT_RATE
 
|Temperature-independent mortality rate
 
|Temperature-independent mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 856: Line 1,210:
 
|NH4_Ks
 
|NH4_Ks
 
|PO4 uptake affinity     
 
|PO4 uptake affinity     
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 863: Line 1,220:
 
|NIT_IN_COEF
 
|NIT_IN_COEF
 
|Nitrification inhibition coefficient
 
|Nitrification inhibition coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 870: Line 1,230:
 
|NIT_O_N_CONV
 
|NIT_O_N_CONV
 
|Nitrification O:N consumption ratio
 
|Nitrification O:N consumption ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 877: Line 1,240:
 
|NITRIFRADLIM
 
|NITRIFRADLIM
 
|Light radiation bellow which nitrification occurs
 
|Light radiation bellow which nitrification occurs
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 884: Line 1,250:
 
|NITRIFRATE
 
|NITRIFRATE
 
|Nitrification rate
 
|Nitrification rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 891: Line 1,260:
 
|NO3_Ks
 
|NO3_Ks
 
|NO3 uptake affinity
 
|NO3 uptake affinity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 898: Line 1,270:
 
|NUT_STRESS_TRESHOLD
 
|NUT_STRESS_TRESHOLD
 
|Nutrient stress threshold (sedimentation)
 
|Nutrient stress threshold (sedimentation)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 905: Line 1,280:
 
|O2_CARB_CONVERS
 
|O2_CARB_CONVERS
 
|Oxygen to carbon conversion factor
 
|Oxygen to carbon conversion factor
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 912: Line 1,290:
 
|O2_KS
 
|O2_KS
 
|Oxygen half saturation constant  
 
|Oxygen half saturation constant  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 919: Line 1,300:
 
|O2_LOW_ASS_EFIC
 
|O2_LOW_ASS_EFIC
 
|Oxygen concentration bollow which ass efic is low  
 
|Oxygen concentration bollow which ass efic is low  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 926: Line 1,310:
 
|PHOTOINHIBITION
 
|PHOTOINHIBITION
 
|Photoinhibition  
 
|Photoinhibition  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 933: Line 1,320:
 
|PO4_Ks
 
|PO4_Ks
 
|PO4 uptake affinity
 
|PO4 uptake affinity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 940: Line 1,330:
 
|POM_BAC_KS
 
|POM_BAC_KS
 
|Bacteria mediated POM Hydrolysis MM constant
 
|Bacteria mediated POM Hydrolysis MM constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 947: Line 1,340:
 
|POM_BAC_VMAX
 
|POM_BAC_VMAX
 
|Vmax for POM Hydrolysis
 
|Vmax for POM Hydrolysis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 954: Line 1,350:
 
|Q10_VALUE
 
|Q10_VALUE
 
|Q10 value for temperature limitation
 
|Q10 value for temperature limitation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 961: Line 1,360:
 
|REDFIELD_NC
 
|REDFIELD_NC
 
|Redfield N:C ratio
 
|Redfield N:C ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 968: Line 1,370:
 
|REDFIELD_PC
 
|REDFIELD_PC
 
|Redfield P:C ratio
 
|Redfield P:C ratio
−
 
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 976: Line 1,380:
 
|REDFIELD_SiC
 
|REDFIELD_SiC
 
|Standard Si:C ratio
 
|Standard Si:C ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 983: Line 1,390:
 
|REF_TEMP
 
|REF_TEMP
 
|Reference temperature
 
|Reference temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 990: Line 1,400:
 
|REF_TEMP_Q10
 
|REF_TEMP_Q10
 
|Reference temperature for Q10 method
 
|Reference temperature for Q10 method
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 997: Line 1,410:
 
|REL_EXCESS_SI
 
|REL_EXCESS_SI
 
|Release rate of excess silicate
 
|Release rate of excess silicate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,004: Line 1,420:
 
|RESP_BASAL
 
|RESP_BASAL
 
|Basal respiration rate
 
|Basal respiration rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,011: Line 1,430:
 
|RESP_FRAC_PROD
 
|RESP_FRAC_PROD
 
|Respired fraction of production
 
|Respired fraction of production
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,018: Line 1,440:
 
|REST_RESP_@10C
 
|REST_RESP_@10C
 
|Rest respiration @ 10ºC
 
|Rest respiration @ 10ºC
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,025: Line 1,450:
 
|SED_MIN
 
|SED_MIN
 
|Minimal sedimentation rate
 
|Minimal sedimentation rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,032: Line 1,460:
 
|SED_NUT_STRESS
 
|SED_NUT_STRESS
 
|Nutrient stress sedimentation rate
 
|Nutrient stress sedimentation rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,039: Line 1,470:
 
|SEDIM_MIN
 
|SEDIM_MIN
 
|Minimal sedimentation rate
 
|Minimal sedimentation rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,046: Line 1,480:
 
|SEDIM_NUT_STRESS
 
|SEDIM_NUT_STRESS
 
|Nutrient stress threshold (sedimentation)
 
|Nutrient stress threshold (sedimentation)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,053: Line 1,490:
 
|SI_UPTAKE_KS
 
|SI_UPTAKE_KS
 
|Silicate uptake Michaelis constant
 
|Silicate uptake Michaelis constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,060: Line 1,500:
 
|SILICA_USE
 
|SILICA_USE
 
|Set Silica use by the producer
 
|Set Silica use by the producer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,067: Line 1,510:
 
|TEMP_LIM_METHOD
 
|TEMP_LIM_METHOD
 
|Temperature limitation method
 
|Temperature limitation method
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,074: Line 1,520:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLightExtinction.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLightExtinction.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 1,085: Line 1,530:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
 +
|-
 +
| Base 1
 +
|LightExtinction
 +
|COEF_PARSONS_PORTELA
 +
|Correct Default Coefficient for Parsons Portela SW Radiation parameterisation
 +
|Needs SW_EXTINCTION_TYPE: 4
 +
|
 +
|0.04
 +
|
 +
|Real
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,106: Line 1,561:
 
|
 
|
 
|-
 
|-
−
| Base 1
+
| rowspan="2" |Base 1
−
|LightExtinction
+
| rowspan="2" |LightExtinction
 
| rowspan="2" |LW_EXTINCTION_TYPE
 
| rowspan="2" |LW_EXTINCTION_TYPE
 
| rowspan="2" |The method used in light extinction estimate
 
| rowspan="2" |The method used in light extinction estimate
 
|1
 
|1
 
|Constant
 
|Constant
−
|1
+
| rowspan="2" |1
−
|
+
| rowspan="2" |
−
|
+
| rowspan="2" |
 
|-
 
|-
−
| Base 1
 
−
|LightExtinction
 
 
|5
 
|5
 
|Ascii file
 
|Ascii file
−
|1
 
−
|
 
−
|
 
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,142: Line 1,592:
 
|0.05
 
|0.05
 
|
 
|
−
|
+
|Real
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,154: Line 1,604:
 
|
 
|
 
|-
 
|-
−
| Base 1
+
| rowspan="6" |Base 1
−
|LightExtinction
+
| rowspan="6" |LightExtinction
 
| rowspan="6" |SW_EXTINCTION_TYPE
 
| rowspan="6" |SW_EXTINCTION_TYPE
 
| rowspan="6" |The method used in light extinction estimate
 
| rowspan="6" |The method used in light extinction estimate
 
|1
 
|1
 
|Constant
 
|Constant
−
|1
+
| rowspan="6" |1
−
|
+
| rowspan="6" |
−
|
+
| rowspan="6" |
 
|-
 
|-
−
| Base 1
 
−
|LightExtinction
 
 
|2
 
|2
 
|Parsons Ocean
 
|Parsons Ocean
−
|1
 
−
|
 
−
|
 
 
|-
 
|-
−
| Base 1
 
−
|LightExtinction
 
 
|3
 
|3
 
|Portela-Tagus Estuary
 
|Portela-Tagus Estuary
−
|1
 
−
|
 
−
|
 
 
|-
 
|-
−
| Base 1
 
−
|LightExtinction
 
 
|4
 
|4
 
|Combined Parsons-Portela
 
|Combined Parsons-Portela
−
|1
 
−
|
 
−
|
 
 
|-
 
|-
−
| Base 1
 
−
|LightExtinction
 
 
|5
 
|5
 
|Ascii file
 
|Ascii file
−
|1
 
−
|
 
−
|
 
 
|-
 
|-
−
| Base 1
 
−
|LightExtinction
 
 
|6
 
|6
 
|Multiparameter
 
|Multiparameter
−
|1
 
−
|
 
−
|
 
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,238: Line 1,663:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleMacroAlgae.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleMacroAlgae.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 1,246: Line 1,670:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,251: Line 1,678:
 
|BEACHED_MORT_RATE
 
|BEACHED_MORT_RATE
 
|Beached drifting macroalgae mortality rate
 
|Beached drifting macroalgae mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,258: Line 1,688:
 
|DEPLIM
 
|DEPLIM
 
|Maximum SPM deposition flux allowed for macroalgae to grow
 
|Maximum SPM deposition flux allowed for macroalgae to grow
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,265: Line 1,698:
 
|DISSDON
 
|DISSDON
 
|fraction of dissolved organic material excreted by macroalgae
 
|fraction of dissolved organic material excreted by macroalgae
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,272: Line 1,708:
 
|DT
 
|DT
 
|Time step compute macroalgae biogeochemical processes
 
|Time step compute macroalgae biogeochemical processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,279: Line 1,718:
 
|ENDREPC
 
|ENDREPC
 
|Macroalgae endogenous respiration rate  
 
|Macroalgae endogenous respiration rate  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,286: Line 1,728:
 
|EROCRITSS
 
|EROCRITSS
 
|Critical shear stress for macroalgae detachment to occur  
 
|Critical shear stress for macroalgae detachment to occur  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,293: Line 1,738:
 
|EXCRCONS
 
|EXCRCONS
 
|Macroalgae excretion rate
 
|Macroalgae excretion rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,300: Line 1,748:
 
|GRAZCONS
 
|GRAZCONS
 
|Grazing rate over macroalgae
 
|Grazing rate over macroalgae
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,307: Line 1,758:
 
|GROWMAX
 
|GROWMAX
 
|macroalgae maximum growth rate
 
|macroalgae maximum growth rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,314: Line 1,768:
 
|MACROALGAE_MINCONC
 
|MACROALGAE_MINCONC
 
|Minimum residual value for macroalgae abundance  
 
|Minimum residual value for macroalgae abundance  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,321: Line 1,778:
 
|MIN_OXYGEN
 
|MIN_OXYGEN
 
|Minimum oxygen concentration for macroalgae growth
 
|Minimum oxygen concentration for macroalgae growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,328: Line 1,788:
 
|MORTCON
 
|MORTCON
 
|Macroalgae mortality half saturation constant
 
|Macroalgae mortality half saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,335: Line 1,798:
 
|MORTMAX
 
|MORTMAX
 
|Macroalgae natural mortality rate
 
|Macroalgae natural mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,342: Line 1,808:
 
|NITROGEN
 
|NITROGEN
 
|Defines if the user wishes to compute the nitrogen cycle
 
|Defines if the user wishes to compute the nitrogen cycle
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,349: Line 1,818:
 
|NSATCONS
 
|NSATCONS
 
|nitrogen half-saturation constant for macroalgae
 
|nitrogen half-saturation constant for macroalgae
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,356: Line 1,828:
 
|PELAGIC_MODEL
 
|PELAGIC_MODEL
 
|Pelagic biogeochemical module coupled
 
|Pelagic biogeochemical module coupled
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,363: Line 1,838:
 
|PHOSPHORUS
 
|PHOSPHORUS
 
|Defines if the user wishes to compute the phosphorus cycle
 
|Defines if the user wishes to compute the phosphorus cycle
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,370: Line 1,848:
 
|PHOTOIN
 
|PHOTOIN
 
|macroalgae optimum radiation value
 
|macroalgae optimum radiation value
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,377: Line 1,858:
 
|PHOTORES
 
|PHOTORES
 
|Macroalgae photorespiration rate
 
|Macroalgae photorespiration rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,384: Line 1,868:
 
|PSATCONS
 
|PSATCONS
 
|phosphorus half-saturation constant for macroalgae
 
|phosphorus half-saturation constant for macroalgae
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,391: Line 1,878:
 
|RATIONC
 
|RATIONC
 
|Macroalgae nitrogen/carbon ratio
 
|Macroalgae nitrogen/carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,398: Line 1,888:
 
|RATIOPC
 
|RATIOPC
 
|Macroalgae phosphorus/carbon ratio
 
|Macroalgae phosphorus/carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,405: Line 1,898:
 
|SALT_EFFECT
 
|SALT_EFFECT
 
|Include salinity limitation on macroalgae growth
 
|Include salinity limitation on macroalgae growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,412: Line 1,908:
 
|SALTCRIT
 
|SALTCRIT
 
|Macroalgae critical salinity limit growth
 
|Macroalgae critical salinity limit growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,419: Line 1,918:
 
|SALTMAX
 
|SALTMAX
 
|Macroalgae maximum salinity for growth
 
|Macroalgae maximum salinity for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,426: Line 1,928:
 
|SALTMIN
 
|SALTMIN
 
|Macroalgae minimum salinity for growth
 
|Macroalgae minimum salinity for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,433: Line 1,938:
 
|SALTOPT
 
|SALTOPT
 
|Macroalgae optimum salinity for growth
 
|Macroalgae optimum salinity for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,440: Line 1,948:
 
|SOLEXCR
 
|SOLEXCR
 
|Fraction of soluble inorganic material excreted by macroalgae
 
|Fraction of soluble inorganic material excreted by macroalgae
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,447: Line 1,958:
 
|TCONST1
 
|TCONST1
 
|Constant to control temperature response curve shape
 
|Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,454: Line 1,968:
 
|TCONST2
 
|TCONST2
 
|Constant to control temperature response curve shape
 
|Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,461: Line 1,978:
 
|TCONST3
 
|TCONST3
 
|Constant to control temperature response curve shape
 
|Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,468: Line 1,988:
 
|TCONST4
 
|TCONST4
 
|Constant to control temperature response curve shape
 
|Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,475: Line 1,998:
 
|TMIN
 
|TMIN
 
|Macroalgae minimum temperature for growth
 
|Macroalgae minimum temperature for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,482: Line 2,008:
 
|TOPTMAX
 
|TOPTMAX
 
|Macroalgae optimum maximum temperature for growth
 
|Macroalgae optimum maximum temperature for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,489: Line 2,018:
 
|TOPTMIN
 
|TOPTMIN
 
|Macroalgae optimum minimum temperature for growth
 
|Macroalgae optimum minimum temperature for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module Profile===
 
=== Module Profile===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleProfile.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleProfile.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 1,503: Line 2,035:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,508: Line 2,043:
 
|DT_OUTPUT_TIME
 
|DT_OUTPUT_TIME
 
|Time step to perform profile outputs in HDF5
 
|Time step to perform profile outputs in HDF5
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,515: Line 2,053:
 
|LOCALIZATION_I
 
|LOCALIZATION_I
 
|Grid cell index I where to perform profile output
 
|Grid cell index I where to perform profile output
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,522: Line 2,063:
 
|LOCALIZATION_J
 
|LOCALIZATION_J
 
|Grid cell index J where to perform profile output
 
|Grid cell index J where to perform profile output
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,529: Line 2,073:
 
|NAME
 
|NAME
 
|Name of profile output  
 
|Name of profile output  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module SedimentQuality===
 
=== Module SedimentQuality===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleSedimentQuality.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleSedimentQuality.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 1,543: Line 2,090:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,550: Line 2,100:
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Base 1
 
−
|SedimentQuality
 
−
|Acoef
 
−
|Coefficient for labile OM decay rate
 
 
|
 
|
 
|
 
|
Line 1,562: Line 2,108:
 
|Acoef
 
|Acoef
 
|Acoef for Heterotrophs decay rate
 
|Acoef for Heterotrophs decay rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,569: Line 2,118:
 
|Acoef
 
|Acoef
 
|Acoef for Autotrophs C specific decay (death) Rate
 
|Acoef for Autotrophs C specific decay (death) Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,576: Line 2,128:
 
|Acoef
 
|Acoef
 
|Acoef for the Anaerobic C specific decay (death) Rate
 
|Acoef for the Anaerobic C specific decay (death) Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,583: Line 2,138:
 
|Acoef
 
|Acoef
 
|Calculates the AmmoniaToNitrate (nitrification) specific Rate  
 
|Calculates the AmmoniaToNitrate (nitrification) specific Rate  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,589: Line 2,147:
 
|SedimentQuality
 
|SedimentQuality
 
|Acoef
 
|Acoef
−
|A coef for  
+
|A coef for the AmmoniaImobilization specific Rate
−
the AmmoniaImobilization specific Rate
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,598: Line 2,158:
 
|Acoef
 
|Acoef
 
|Acoef for for the NitrateToNgas specific Rate (denitrification)
 
|Acoef for for the NitrateToNgas specific Rate (denitrification)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,605: Line 2,168:
 
|Acoef
 
|Acoef
 
|Acoef for the  NitrateImobilization specific Rate
 
|Acoef for the  NitrateImobilization specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,610: Line 2,176:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|Activation Energy for labil organic mater carbon decay rate
 
|Activation Energy for labil organic mater carbon decay rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,617: Line 2,186:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|Coeficient for refractory OM decay rate
 
|Coeficient for refractory OM decay rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,624: Line 2,196:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|AE for Heterotrophs decay rate
 
|AE for Heterotrophs decay rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,631: Line 2,206:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|AE activation energy for the Autotrophs C specific decay (death) Rate
 
|AE activation energy for the Autotrophs C specific decay (death) Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,638: Line 2,216:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|AE for the Anaerobic C specific decay (death) Rate
 
|AE for the Anaerobic C specific decay (death) Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,645: Line 2,226:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|Calculates the AmmoniaToNitrate (nitrification) specific Rate.
 
|Calculates the AmmoniaToNitrate (nitrification) specific Rate.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,652: Line 2,236:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|Calculates the AmmoniaImobilization specific Rate
 
|Calculates the AmmoniaImobilization specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,659: Line 2,246:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|Activation Energy for the NitrateToNgas specific Rate
 
|Activation Energy for the NitrateToNgas specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,666: Line 2,256:
 
| Base 1
 
| Base 1
 
|SedimentQuality
 
|SedimentQuality
−
|AE
+
|ActivationE
 
|Activation Energy for the  NitrateImobilization specific Rate
 
|Activation Energy for the  NitrateImobilization specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,675: Line 2,268:
 
|CARBON
 
|CARBON
 
|Determines if calculations of carbon related properties is performed
 
|Determines if calculations of carbon related properties is performed
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,682: Line 2,278:
 
|CARBON_EFICIENCY
 
|CARBON_EFICIENCY
 
|Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2
 
|Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,689: Line 2,288:
 
|CARBON_EFICIENCY
 
|CARBON_EFICIENCY
 
|Carbon assimilation efficiency for Anaerobic population
 
|Carbon assimilation efficiency for Anaerobic population
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,696: Line 2,298:
 
|CN_RATIO
 
|CN_RATIO
 
|CN ratio of Hetrotrophs biomass
 
|CN ratio of Hetrotrophs biomass
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,703: Line 2,308:
 
|CN_RATIO
 
|CN_RATIO
 
|CN ratio of Autotrophs biomass
 
|CN ratio of Autotrophs biomass
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,710: Line 2,318:
 
|CN_RATIO
 
|CN_RATIO
 
|CN ratio of anaerobic population.
 
|CN ratio of anaerobic population.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,717: Line 2,328:
 
|DTSECONDS
 
|DTSECONDS
 
|Time step for sediment quality calculation
 
|Time step for sediment quality calculation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,724: Line 2,338:
 
|EXPLICIT
 
|EXPLICIT
 
|Sistem is solved with explicit formulation
 
|Sistem is solved with explicit formulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,731: Line 2,348:
 
|MINIMUM_POPULATION  
 
|MINIMUM_POPULATION  
 
|Minimum population for death rate to occur (below value no death)
 
|Minimum population for death rate to occur (below value no death)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,738: Line 2,358:
 
|MINIMUM_POPULATION  
 
|MINIMUM_POPULATION  
 
|Minimum population for death rated to take place
 
|Minimum population for death rated to take place
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,745: Line 2,368:
 
|MINIMUM_POPULATION       
 
|MINIMUM_POPULATION       
 
|Minimum population for death rate top occur  
 
|Minimum population for death rate top occur  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,752: Line 2,378:
 
|NITROGEN
 
|NITROGEN
 
|Option to activate or deactivate the calculation of Nitrogen related properties  
 
|Option to activate or deactivate the calculation of Nitrogen related properties  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,759: Line 2,388:
 
|NITROGEN_EFICIENCY
 
|NITROGEN_EFICIENCY
 
|NITROGEN EFICIENCY for autotrophic population
 
|NITROGEN EFICIENCY for autotrophic population
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,766: Line 2,398:
 
|NITROGEN_EFICIENCY  
 
|NITROGEN_EFICIENCY  
 
|Nitrogen assimilation efficiency of anaerobic population
 
|Nitrogen assimilation efficiency of anaerobic population
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,773: Line 2,408:
 
|POPULATION_CARBON_RATIO
 
|POPULATION_CARBON_RATIO
 
|Convertion form carbon concentration to population for Anaerobic populations
 
|Convertion form carbon concentration to population for Anaerobic populations
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,780: Line 2,418:
 
|POPULATION_CARBON_RATIO  
 
|POPULATION_CARBON_RATIO  
 
|COnversion form Carbon mass of hetrotrphs to population nºs
 
|COnversion form Carbon mass of hetrotrphs to population nºs
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,787: Line 2,428:
 
|POPULATION_CARBON_RATIO  
 
|POPULATION_CARBON_RATIO  
 
|Convertion form carbon biomass to nº of individual cells
 
|Convertion form carbon biomass to nº of individual cells
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,794: Line 2,438:
 
|Temperature
 
|Temperature
 
|Temperature for Autotrophs C specific decay (death) Rate
 
|Temperature for Autotrophs C specific decay (death) Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,801: Line 2,448:
 
|Temperature
 
|Temperature
 
|Optimum temperature for the Anaerobic C specific decay (death) Rate
 
|Optimum temperature for the Anaerobic C specific decay (death) Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,808: Line 2,458:
 
|Temperature
 
|Temperature
 
|Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate  
 
|Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,815: Line 2,468:
 
|Temperature
 
|Temperature
 
|Optimum temperature for the AmmoniaImobilization specific Rate
 
|Optimum temperature for the AmmoniaImobilization specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,822: Line 2,478:
 
|Temperature
 
|Temperature
 
|OPtimum temperature for the NitrateToNgas specific Rate
 
|OPtimum temperature for the NitrateToNgas specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,829: Line 2,488:
 
|Temperature
 
|Temperature
 
|Optimum temperature for the  NitrateImobilization specific Rate
 
|Optimum temperature for the  NitrateImobilization specific Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,836: Line 2,498:
 
|Temperature  
 
|Temperature  
 
|Optimum temperature for decay rate  
 
|Optimum temperature for decay rate  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,845: Line 2,510:
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Base 1
 
−
|SedimentQuality
 
−
|Temperature 
 
−
|Optimum Temperature for rate
 
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module WaterQuality===
 
=== Module WaterQuality===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleWaterQuality.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleWaterQuality.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 1,864: Line 2,525:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 1
 
| Base 1
Line 1,869: Line 2,533:
 
|AFG
 
|AFG
 
|Growth coefficient dependent of fishfood availability HalfSaturationConstant
 
|Growth coefficient dependent of fishfood availability HalfSaturationConstant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,876: Line 2,543:
 
|AGE
 
|AGE
 
|Water "Age" : Lagrangean property
 
|Water "Age" : Lagrangean property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,883: Line 2,553:
 
|ASS_EFIC
 
|ASS_EFIC
 
|Phytoplankton: Assimilation efficiency of flagellates by the zooplankton
 
|Phytoplankton: Assimilation efficiency of flagellates by the zooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,890: Line 2,563:
 
|ATG
 
|ATG
 
|Growth coefficient dependent of temperature
 
|Growth coefficient dependent of temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,897: Line 2,573:
 
|ATZ
 
|ATZ
 
|Death coefficient dependent of temperature
 
|Death coefficient dependent of temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,904: Line 2,583:
 
|AWG
 
|AWG
 
|Growth coefficient dependent of larvae weight
 
|Growth coefficient dependent of larvae weight
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,911: Line 2,593:
 
|AWZ
 
|AWZ
 
|Death coefficient dependent of larvae weight
 
|Death coefficient dependent of larvae weight
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,918: Line 2,603:
 
|BACINGCIL
 
|BACINGCIL
 
|Ciliates: Proportion of bacteria in microzooplankton ingestion
 
|Ciliates: Proportion of bacteria in microzooplankton ingestion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,925: Line 2,613:
 
|BACMINSUB
 
|BACMINSUB
 
|Bacteria: Minimum substract concentration for bacteria uptake
 
|Bacteria: Minimum substract concentration for bacteria uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,932: Line 2,623:
 
|BACNCONS
 
|BACNCONS
 
|Bacteria: Half-saturation constant for bacteria nutrient uptake
 
|Bacteria: Half-saturation constant for bacteria nutrient uptake
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,939: Line 2,633:
 
|BACTERIA
 
|BACTERIA
 
|Bacteria: Processes Simulation
 
|Bacteria: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,946: Line 2,643:
 
|BACTRATIOOC
 
|BACTRATIOOC
 
|Oxygen: Bacteria Oxygen/Carbon Ratio
 
|Oxygen: Bacteria Oxygen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,953: Line 2,653:
 
|BARESPCO
 
|BARESPCO
 
|Bacteria: Excretion Rate
 
|Bacteria: Excretion Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,960: Line 2,663:
 
|BMAXUPTA
 
|BMAXUPTA
 
|Bacteria: Maximum nutrient uptake at the reference temperature
 
|Bacteria: Maximum nutrient uptake at the reference temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,967: Line 2,673:
 
|BOD
 
|BOD
 
|BOD: Processes Simulation
 
|BOD: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,974: Line 2,683:
 
|BODCOEF
 
|BODCOEF
 
|BOD: BOD oxidation coefficient
 
|BOD: BOD oxidation coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,981: Line 2,693:
 
|BODOSSAT
 
|BODOSSAT
 
|BOD: Oxygen limitation half-saturation constant
 
|BOD: Oxygen limitation half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 1,990: Line 2,705:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Base 1
 
| Base 1
 
|WaterQuality
 
|WaterQuality
 
|BRATIONC
 
|BRATIONC
 
|Bacteria: Nitrogen/Carbon Ratio
 
|Bacteria: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,002: Line 2,723:
 
|BTG
 
|BTG
 
|Growth coefficient dependent of temperature
 
|Growth coefficient dependent of temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,009: Line 2,733:
 
|BTZ
 
|BTZ
 
|Death coefficient dependent of temperature
 
|Death coefficient dependent of temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,016: Line 2,743:
 
|BWG
 
|BWG
 
|Growth coefficient dependent of larvae weight
 
|Growth coefficient dependent of larvae weight
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,023: Line 2,753:
 
|BWZ
 
|BWZ
 
|Death coefficient dependent of larvae weight
 
|Death coefficient dependent of larvae weight
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,030: Line 2,763:
 
|CEXCCONS
 
|CEXCCONS
 
|Ciliates: Excretion constant curve
 
|Ciliates: Excretion constant curve
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,037: Line 2,773:
 
|CEXCFAC
 
|CEXCFAC
 
|Ciliates: Excretion factor
 
|Ciliates: Excretion factor
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,044: Line 2,783:
 
|CILBACASS
 
|CILBACASS
 
|Ciliates: Assimilation coefficient of bacteria by microzooplankton
 
|Ciliates: Assimilation coefficient of bacteria by microzooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,051: Line 2,793:
 
|CILCORATIO
 
|CILCORATIO
 
|Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
 
|Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,058: Line 2,803:
 
|CILEFFCAPBA
 
|CILEFFCAPBA
 
|Ciliates: Capture efficiency of bacteria
 
|Ciliates: Capture efficiency of bacteria
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,065: Line 2,813:
 
|CILEFFCAPPHY
 
|CILEFFCAPPHY
 
|Ciliates: Capture efficiency of phytoplankton
 
|Ciliates: Capture efficiency of phytoplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,072: Line 2,823:
 
|CILIATE
 
|CILIATE
 
|Ciliates: Processes Simulation
 
|Ciliates: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,079: Line 2,833:
 
|CILPHYASS
 
|CILPHYASS
 
|Ciliates: Assimilation coefficient of flagellates by microzooplankton
 
|Ciliates: Assimilation coefficient of flagellates by microzooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,086: Line 2,843:
 
|CILPREYMIN
 
|CILPREYMIN
 
|Ciliates: Minimum prey concentration for grazing
 
|Ciliates: Minimum prey concentration for grazing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,093: Line 2,853:
 
|CILRATINGZOO
 
|CILRATINGZOO
 
|Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
 
|Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,100: Line 2,863:
 
|CINGMAX
 
|CINGMAX
 
|Ciliates: Maximum ingestion rate
 
|Ciliates: Maximum ingestion rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,107: Line 2,873:
 
|CRATIONC
 
|CRATIONC
 
|Ciliates: Nitrogen/Carbon Ratio
 
|Ciliates: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,114: Line 2,883:
 
|CRATIOPC
 
|CRATIOPC
 
|Ciliates: Phosphorus/Carbon Ratio
 
|Ciliates: Phosphorus/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,121: Line 2,893:
 
|CREFRESP
 
|CREFRESP
 
|Ciliates: Carbon consumption rate by respiration  
 
|Ciliates: Carbon consumption rate by respiration  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,128: Line 2,903:
 
|DENITREF
 
|DENITREF
 
|Nitrogen: Reference denitirfication rate
 
|Nitrogen: Reference denitirfication rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,135: Line 2,913:
 
|DENSATCO
 
|DENSATCO
 
|Nitrogen: Denitrification half-saturation constant
 
|Nitrogen: Denitrification half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,142: Line 2,923:
 
|DIASS_EFIC
 
|DIASS_EFIC
 
|Diatoms: Assimilation efficiency of diatoms by zooplankton
 
|Diatoms: Assimilation efficiency of diatoms by zooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,149: Line 2,933:
 
|DIATOMS
 
|DIATOMS
 
|Diatoms: Processes Simulation
 
|Diatoms: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,156: Line 2,943:
 
|DIDISSDON
 
|DIDISSDON
 
|Diatoms: Fraction of dissolved organic material in excretions
 
|Diatoms: Fraction of dissolved organic material in excretions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,163: Line 2,953:
 
|DIEXCRCONS
 
|DIEXCRCONS
 
|Diatoms: Excretion constant  
 
|Diatoms: Excretion constant  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,170: Line 2,963:
 
|DIFENDREPC
 
|DIFENDREPC
 
|Diatoms: Endogenous respiration constant
 
|Diatoms: Endogenous respiration constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,177: Line 2,973:
 
|DIGRAZMIN
 
|DIGRAZMIN
 
|Zooplankton: Minimum diatoms concentration for grazing
 
|Zooplankton: Minimum diatoms concentration for grazing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,184: Line 2,983:
 
|DIGROWMAX
 
|DIGROWMAX
 
|Diatoms: Maximum gross growth rate
 
|Diatoms: Maximum gross growth rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,191: Line 2,993:
 
|DIMORTCON
 
|DIMORTCON
 
|Diatoms: Mortality half-saturation Constant  
 
|Diatoms: Mortality half-saturation Constant  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,198: Line 3,003:
 
|DIMORTMAX
 
|DIMORTMAX
 
|Diatoms: Maximum Mortality Rate
 
|Diatoms: Maximum Mortality Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,205: Line 3,013:
 
|DINSATCONS
 
|DINSATCONS
 
|Diatoms: Nitrogen half-saturation constant  
 
|Diatoms: Nitrogen half-saturation constant  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,212: Line 3,023:
 
|DIPHOTOIN
 
|DIPHOTOIN
 
|Diatoms: Optimum light intensity for photosynthesis
 
|Diatoms: Optimum light intensity for photosynthesis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,219: Line 3,033:
 
|DIPHOTORES
 
|DIPHOTORES
 
|Diatoms: Fraction of actual photosynthesis oxidized by photorespiration
 
|Diatoms: Fraction of actual photosynthesis oxidized by photorespiration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,226: Line 3,043:
 
|DIPSATCONS
 
|DIPSATCONS
 
|Diatoms: Phosphorus half-saturation constant
 
|Diatoms: Phosphorus half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,233: Line 3,053:
 
|DIRATINGZOO
 
|DIRATINGZOO
 
|Zooplankton: Proportion of diatoms in mesozooplankton ingestion
 
|Zooplankton: Proportion of diatoms in mesozooplankton ingestion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,240: Line 3,063:
 
|DIRATIONC
 
|DIRATIONC
 
|Diatoms: Nitrogen/Carbon Ratio
 
|Diatoms: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,247: Line 3,073:
 
|DIRATIOPC
 
|DIRATIOPC
 
|Diatoms: Phosphorus/Carbon Ratio
 
|Diatoms: Phosphorus/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,254: Line 3,083:
 
|DIRATIOSIC
 
|DIRATIOSIC
 
|Diatoms: Silica/Carbon Ratio
 
|Diatoms: Silica/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,261: Line 3,093:
 
|DISISATCONS
 
|DISISATCONS
 
|Diatoms: Silicate half-saturation constant
 
|Diatoms: Silicate half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,268: Line 3,103:
 
|DISOLEXCR
 
|DISOLEXCR
 
|Diatoms: Fraction of soluble inorganic material in excretions
 
|Diatoms: Fraction of soluble inorganic material in excretions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,275: Line 3,113:
 
|DITCONST1
 
|DITCONST1
 
|Diatoms: Constant to control temperature response curve shape
 
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,282: Line 3,123:
 
|DITCONST2
 
|DITCONST2
 
|Diatoms: Constant to control temperature response curve shape
 
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,289: Line 3,133:
 
|DITCONST3
 
|DITCONST3
 
|Diatoms: Constant to control temperature response curve shape
 
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,296: Line 3,143:
 
|DITCONST4
 
|DITCONST4
 
|Diatoms: Constant to control temperature response curve shape
 
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,303: Line 3,153:
 
|DITMAX
 
|DITMAX
 
|Diatoms: Maximum temperature tolerable for growth
 
|Diatoms: Maximum temperature tolerable for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,310: Line 3,163:
 
|DITMIN
 
|DITMIN
 
|Diatoms: Minimum tolerable temperature for growth
 
|Diatoms: Minimum tolerable temperature for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,317: Line 3,173:
 
|DITOPTMAX
 
|DITOPTMAX
 
|Diatoms: Maximum temperature of the optimal interval for photosynthesis
 
|Diatoms: Maximum temperature of the optimal interval for photosynthesis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,324: Line 3,183:
 
|DITOPTMIN
 
|DITOPTMIN
 
|Diatoms:  Minimum temperature of the optimal interval for photosynthesis
 
|Diatoms:  Minimum temperature of the optimal interval for photosynthesis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,331: Line 3,193:
 
|DIZOASS
 
|DIZOASS
 
|Zooplankton: Assimilation coefficient of diatoms by mesozooplankton
 
|Zooplankton: Assimilation coefficient of diatoms by mesozooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,338: Line 3,203:
 
|DIZOOEFFCAP
 
|DIZOOEFFCAP
 
|Zooplankton: Capture efficiency of diatoms
 
|Zooplankton: Capture efficiency of diatoms
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,345: Line 3,213:
 
|DTSECONDS
 
|DTSECONDS
 
|Time step for water quality processes calculation
 
|Time step for water quality processes calculation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,352: Line 3,223:
 
|EXCRCONS
 
|EXCRCONS
 
|Phytoplankton: Excretion constant
 
|Phytoplankton: Excretion constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,359: Line 3,233:
 
|EXPLICIT
 
|EXPLICIT
 
|Explicit Method  
 
|Explicit Method  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,366: Line 3,243:
 
|FDISSDON
 
|FDISSDON
 
|Phytoplankton: Fraction of dissolved organic material in excretions
 
|Phytoplankton: Fraction of dissolved organic material in excretions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,373: Line 3,253:
 
|FENDREPC
 
|FENDREPC
 
|Phytoplankton: Endogenous respiration constant
 
|Phytoplankton: Endogenous respiration constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,380: Line 3,263:
 
|FINAL_AGE
 
|FINAL_AGE
 
|Larvae Final Age
 
|Larvae Final Age
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,387: Line 3,273:
 
|FINAL_LENGTH
 
|FINAL_LENGTH
 
|Larvae Final Length  
 
|Larvae Final Length  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,394: Line 3,283:
 
|FISHFOOD_REF
 
|FISHFOOD_REF
 
|Reference food availability
 
|Reference food availability
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,401: Line 3,293:
 
|FMORTCON
 
|FMORTCON
 
|Phytoplankton: Mortality half saturation rate
 
|Phytoplankton: Mortality half saturation rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,408: Line 3,303:
 
|FMORTMAX
 
|FMORTMAX
 
|Phytoplankton: Maximum mortality
 
|Phytoplankton: Maximum mortality
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,415: Line 3,313:
 
|FRATIONC
 
|FRATIONC
 
|Phytoplankton: Nitrogen/Carbon Ratio
 
|Phytoplankton: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,422: Line 3,323:
 
|FRATIOPC
 
|FRATIOPC
 
|Phytoplankton: Phosphorus/Carbon ratio
 
|Phytoplankton: Phosphorus/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,429: Line 3,333:
 
|FREGSATC
 
|FREGSATC
 
|Nutrients: Nutrient regeneration half-saturation rate
 
|Nutrients: Nutrient regeneration half-saturation rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,436: Line 3,343:
 
|FSOLEXCR
 
|FSOLEXCR
 
|Phytoplankton: Fraction of soluble inorganic in excretions
 
|Phytoplankton: Fraction of soluble inorganic in excretions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,443: Line 3,353:
 
|GRAZBACMIN
 
|GRAZBACMIN
 
|Ciliates: Minimum flagellates concentration for grazing
 
|Ciliates: Minimum flagellates concentration for grazing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,450: Line 3,363:
 
|GRAZCILMIN
 
|GRAZCILMIN
 
|Zooplankton: Minimum microzooplankton concentration for grazing
 
|Zooplankton: Minimum microzooplankton concentration for grazing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,457: Line 3,373:
 
|GRAZFITOMIN
 
|GRAZFITOMIN
 
|Zooplankton: Minimum fagellates concentration for grazing
 
|Zooplankton: Minimum fagellates concentration for grazing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,464: Line 3,383:
 
|GROWMAXF
 
|GROWMAXF
 
|Phytoplankton: Maximum growth rate
 
|Phytoplankton: Maximum growth rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,471: Line 3,393:
 
|GROWMAXZ
 
|GROWMAXZ
 
|Zooplankton: Maximum zooplankton growth rate
 
|Zooplankton: Maximum zooplankton growth rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,478: Line 3,403:
 
|IMPLICIT
 
|IMPLICIT
 
|Implicit Method Calculation
 
|Implicit Method Calculation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,485: Line 3,413:
 
|INGCONSC
 
|INGCONSC
 
|Ciliates: Half-saturation constant for grazing  
 
|Ciliates: Half-saturation constant for grazing  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,492: Line 3,423:
 
|INGCONSZ
 
|INGCONSZ
 
|Zooplankton: Half-saturation constant for predation
 
|Zooplankton: Half-saturation constant for predation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,499: Line 3,433:
 
|INIT_AGE
 
|INIT_AGE
 
|Larvae Inital Age
 
|Larvae Inital Age
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,506: Line 3,443:
 
|INIT_LENGTH
 
|INIT_LENGTH
 
|Larvae Inital Length
 
|Larvae Inital Length
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,513: Line 3,453:
 
|INTER_AGE
 
|INTER_AGE
 
|Larvae Intermediate Age
 
|Larvae Intermediate Age
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,520: Line 3,463:
 
|INTER_LENGTH
 
|INTER_LENGTH
 
|Larvae Intermediate Length
 
|Larvae Intermediate Length
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,527: Line 3,473:
 
|IVLEVCON
 
|IVLEVCON
 
|Zooplankton: Ivlev grazing constant
 
|Zooplankton: Ivlev grazing constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,534: Line 3,483:
 
|LARVAE
 
|LARVAE
 
|Larvae Processes Simulation
 
|Larvae Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,541: Line 3,493:
 
|LDENSITY
 
|LDENSITY
 
|Larvae density factor
 
|Larvae density factor
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,548: Line 3,503:
 
|LSHAPE
 
|LSHAPE
 
|Larvae shape factor  
 
|Larvae shape factor  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,555: Line 3,513:
 
|MAXMORTCI
 
|MAXMORTCI
 
|Ciliates: Maximum Mortality Rate
 
|Ciliates: Maximum Mortality Rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,562: Line 3,523:
 
|MAXMORTZ
 
|MAXMORTZ
 
|Zooplankton: Maximum mortality rate
 
|Zooplankton: Maximum mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,569: Line 3,533:
 
|MINMORTCI
 
|MINMORTCI
 
|Ciliates: Minimum Mortality rate
 
|Ciliates: Minimum Mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,576: Line 3,543:
 
|MINMORTZ
 
|MINMORTZ
 
|Zooplankton: Minimum mortality rate
 
|Zooplankton: Minimum mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,583: Line 3,553:
 
|MINOXYGEN
 
|MINOXYGEN
 
|Oxygen: Minimum oxygen concentration allowed
 
|Oxygen: Minimum oxygen concentration allowed
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,590: Line 3,563:
 
|MORTCICOEF
 
|MORTCICOEF
 
|Ciliates: Mortality coefficient
 
|Ciliates: Mortality coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,597: Line 3,573:
 
|MORTZCOEF
 
|MORTZCOEF
 
|Zooplankton: Shape factor for the mortality curve of zooplankton
 
|Zooplankton: Shape factor for the mortality curve of zooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,604: Line 3,583:
 
|NATMORB
 
|NATMORB
 
|Bacteria: Natural mortality rate
 
|Bacteria: Natural mortality rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,611: Line 3,593:
 
|NITONRAT
 
|NITONRAT
 
|Oxygen: Oxygen/Carbon in Nitrate
 
|Oxygen: Oxygen/Carbon in Nitrate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,618: Line 3,603:
 
|NITRIREF
 
|NITRIREF
 
|Nitrogen: Reference nitrification rate
 
|Nitrogen: Reference nitrification rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,625: Line 3,613:
 
|NITROGEN
 
|NITROGEN
 
|Nitrogen: Biogeochemical Processes Simulation
 
|Nitrogen: Biogeochemical Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,632: Line 3,623:
 
|NITSATCO
 
|NITSATCO
 
|Nitrogen: Nitrification half-saturation constant
 
|Nitrogen: Nitrification half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,639: Line 3,633:
 
|NMINENR
 
|NMINENR
 
|Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)
 
|Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,646: Line 3,643:
 
|NMINR
 
|NMINR
 
|Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)
 
|Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,653: Line 3,653:
 
|NOPCOEF
 
|NOPCOEF
 
|Nitrogen: PON decomposition temperature coefficient
 
|Nitrogen: PON decomposition temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,660: Line 3,663:
 
|NOPREF
 
|NOPREF
 
|Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)
 
|Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,667: Line 3,673:
 
|NPHASES
 
|NPHASES
 
|Number of larvae phases (valid values are 1 and 2)
 
|Number of larvae phases (valid values are 1 and 2)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,674: Line 3,683:
 
|NSATCONS
 
|NSATCONS
 
|Phytoplankton: Nitrogen half-saturation constant
 
|Phytoplankton: Nitrogen half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,681: Line 3,693:
 
|OCRATIO
 
|OCRATIO
 
|Oxygen: Oxygen/Carbon in CO2
 
|Oxygen: Oxygen/Carbon in CO2
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,688: Line 3,703:
 
|OMRATIONC
 
|OMRATIONC
 
|Oxygen: Organic Matter Nitrogen/Carbon Ratio
 
|Oxygen: Organic Matter Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,695: Line 3,713:
 
|OMRATIOPC
 
|OMRATIOPC
 
|Oxygen: Organic Matter Phosphorus/Carbon Ratio
 
|Oxygen: Organic Matter Phosphorus/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,702: Line 3,723:
 
|PHDECOMP
 
|PHDECOMP
 
|Nitrogen: Fraction of PON available for mineralization
 
|Nitrogen: Fraction of PON available for mineralization
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,709: Line 3,733:
 
|PHOSOPRAT
 
|PHOSOPRAT
 
|Oxygen: Oxygen/Carbon in Phosphate
 
|Oxygen: Oxygen/Carbon in Phosphate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,716: Line 3,743:
 
|PHOSPHOR
 
|PHOSPHOR
 
|Phosphorus: Biogeochemical Processes Simulation
 
|Phosphorus: Biogeochemical Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,723: Line 3,753:
 
|PHOTOIN
 
|PHOTOIN
 
|Phytoplankton: Optimum light intensity for photosyntesis
 
|Phytoplankton: Optimum light intensity for photosyntesis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,730: Line 3,763:
 
|PHOTORES
 
|PHOTORES
 
|Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration
 
|Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,737: Line 3,773:
 
|PHOTOSOC
 
|PHOTOSOC
 
|Oxygen: Photosynthesis Oxygen/Carbon ratio
 
|Oxygen: Photosynthesis Oxygen/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,744: Line 3,783:
 
|PHYINGCIL
 
|PHYINGCIL
 
|Ciliates: Proportion of flagellates in microzooplankton ingestion
 
|Ciliates: Proportion of flagellates in microzooplankton ingestion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,751: Line 3,793:
 
|PHYRATING
 
|PHYRATING
 
|Zooplankton: proportion of phytoplankton in mesozooplankton ingestion
 
|Zooplankton: proportion of phytoplankton in mesozooplankton ingestion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,758: Line 3,803:
 
|PHYTO
 
|PHYTO
 
|Phytoplankton: Processes Simulation
 
|Phytoplankton: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,765: Line 3,813:
 
|PLANK_OC_RAT
 
|PLANK_OC_RAT
 
|Oxygen: Oxygen/Carbon ratio in plankton respiration
 
|Oxygen: Oxygen/Carbon ratio in plankton respiration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,772: Line 3,823:
 
|PMINNR
 
|PMINNR
 
|Phosphorus: DOPnr mineralization rate at reference temperature
 
|Phosphorus: DOPnr mineralization rate at reference temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,779: Line 3,833:
 
|PMINNRCOEF
 
|PMINNRCOEF
 
|Phosphorus: DOPnr mineralization temperature coefficient
 
|Phosphorus: DOPnr mineralization temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,786: Line 3,843:
 
|PMINR
 
|PMINR
 
|Phosphorus: DOPre mineralization rate at reference tempearture
 
|Phosphorus: DOPre mineralization rate at reference tempearture
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,793: Line 3,853:
 
|PMINRCOEF
 
|PMINRCOEF
 
|Phosphorus: DOPre mineralization temperature coefficient
 
|Phosphorus: DOPre mineralization temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,800: Line 3,863:
 
|PPARTMIN
 
|PPARTMIN
 
|Phosphorus: POP decomposition rate at reference temperature
 
|Phosphorus: POP decomposition rate at reference temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,807: Line 3,873:
 
|PSATCONS
 
|PSATCONS
 
|Phytoplankton: Phosphorus half-saturation constant
 
|Phytoplankton: Phosphorus half-saturation constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,814: Line 3,883:
 
|SEMIIMP
 
|SEMIIMP
 
|Semi-implicit Method Calculation
 
|Semi-implicit Method Calculation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,821: Line 3,893:
 
|SIDISSTCOEF
 
|SIDISSTCOEF
 
|Silica: Biogenic silica dissolution temperature coefficient
 
|Silica: Biogenic silica dissolution temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,828: Line 3,903:
 
|SIKDISS
 
|SIKDISS
 
|Silica: Biogenic silica dissolution rate in the water column at the reference temperature
 
|Silica: Biogenic silica dissolution rate in the water column at the reference temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,835: Line 3,913:
 
|SILICA
 
|SILICA
 
|Silica: Processes Simulation
 
|Silica: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,842: Line 3,923:
 
|TBCONST1
 
|TBCONST1
 
|Bacteria: Constant to control temperature response curve shape
 
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,849: Line 3,933:
 
|TBCONST2
 
|TBCONST2
 
|Bacteria: Constant to control temperature response curve shape
 
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,856: Line 3,943:
 
|TBCONST3
 
|TBCONST3
 
|Bacteria: Constant to control temperature response curve shape
 
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,863: Line 3,953:
 
|TBCONST4
 
|TBCONST4
 
|Bacteria: Constant to control temperature response curve shape
 
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,870: Line 3,963:
 
|TBMAX
 
|TBMAX
 
|Bacteria: Maximum temperature tolerable temperature for growth
 
|Bacteria: Maximum temperature tolerable temperature for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,877: Line 3,973:
 
|TBMIN
 
|TBMIN
 
|Bacteria: Minimum temperature tolerable for growth
 
|Bacteria: Minimum temperature tolerable for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,884: Line 3,983:
 
|TDENCOEF
 
|TDENCOEF
 
|Nitrogen: Denitrification Temperature Coefficient
 
|Nitrogen: Denitrification Temperature Coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,891: Line 3,993:
 
|TEMPERATURE_REF
 
|TEMPERATURE_REF
 
|Larvae Reference temperature
 
|Larvae Reference temperature
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,898: Line 4,003:
 
|TFCONST1
 
|TFCONST1
 
|Phytoplankton: Constant to control temperature response curve shape
 
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,905: Line 4,013:
 
|TFCONST2
 
|TFCONST2
 
|Phytoplankton: Constant to control temperature response curve shape
 
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,912: Line 4,023:
 
|TFCONST3
 
|TFCONST3
 
|Phytoplankton: Constant to control temperature response curve shape
 
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,919: Line 4,033:
 
|TFCONST4
 
|TFCONST4
 
|Phytoplankton: Constant to control temperature response curve shape
 
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,926: Line 4,043:
 
|TFMAX
 
|TFMAX
 
|Phytoplankton: Maximum temperature tolerable for growth
 
|Phytoplankton: Maximum temperature tolerable for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,933: Line 4,053:
 
|TFMIN
 
|TFMIN
 
|Phytoplankton: Minimum  temperature tolerable for growth
 
|Phytoplankton: Minimum  temperature tolerable for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,940: Line 4,063:
 
|TMINNR
 
|TMINNR
 
|Nitrogen: DONnr mineralization temperature coefficient
 
|Nitrogen: DONnr mineralization temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,947: Line 4,073:
 
|TMINR
 
|TMINR
 
|Nitrogen: DONr mineralization temperature coefficient
 
|Nitrogen: DONr mineralization temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,954: Line 4,083:
 
|TNITCOEF
 
|TNITCOEF
 
|Nitrogen: Nitrification temperature coefficient
 
|Nitrogen: Nitrification temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,961: Line 4,093:
 
|TOPTBMAX
 
|TOPTBMAX
 
|Bacteria: Maximum temperature of the optimal interval for growth
 
|Bacteria: Maximum temperature of the optimal interval for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,968: Line 4,103:
 
|TOPTBMIN
 
|TOPTBMIN
 
|Bacteria: Minimum temperature of the optimal interval for growth
 
|Bacteria: Minimum temperature of the optimal interval for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,975: Line 4,113:
 
|TOPTFMAX
 
|TOPTFMAX
 
|Phytoplankton: Maximum temperature of the optimal interval for photosyntesis
 
|Phytoplankton: Maximum temperature of the optimal interval for photosyntesis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,982: Line 4,123:
 
|TOPTFMIN
 
|TOPTFMIN
 
|Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis
 
|Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,989: Line 4,133:
 
|TOPTZMAX
 
|TOPTZMAX
 
|Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth
 
|Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 2,996: Line 4,143:
 
|TOPTZMIN
 
|TOPTZMIN
 
|Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth
 
|Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,003: Line 4,153:
 
|TPPARTMINCOEF
 
|TPPARTMINCOEF
 
|Phosphorus: POP decomposition temperature coefficient
 
|Phosphorus: POP decomposition temperature coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,010: Line 4,163:
 
|TZCONST1
 
|TZCONST1
 
|Zooplankton: Constant to control temperature response curve shape
 
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,017: Line 4,173:
 
|TZCONST2
 
|TZCONST2
 
|Zooplankton: Constant to control temperature response curve shape
 
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,024: Line 4,183:
 
|TZCONST3
 
|TZCONST3
 
|Zooplankton: Constant to control temperature response curve shape
 
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,031: Line 4,193:
 
|TZCONST4
 
|TZCONST4
 
|Zooplankton: Constant to control temperature response curve shape
 
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,038: Line 4,203:
 
|TZMAX
 
|TZMAX
 
|Zooplankton: Maximum temperature tolerable for growth
 
|Zooplankton: Maximum temperature tolerable for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,045: Line 4,213:
 
|TZMIN
 
|TZMIN
 
|Zooplankton: Minimum temperature tolerable for growth
 
|Zooplankton: Minimum temperature tolerable for growth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,052: Line 4,223:
 
|ZDISSDON
 
|ZDISSDON
 
|Zooplankton: Dissolved organic fraction in excretions
 
|Zooplankton: Dissolved organic fraction in excretions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,059: Line 4,233:
 
|ZEXCCONS
 
|ZEXCCONS
 
|Zooplankton: Excretion constant for zooplankton
 
|Zooplankton: Excretion constant for zooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,066: Line 4,243:
 
|ZEXCFAC
 
|ZEXCFAC
 
|Zooplankton: Excretion Factor
 
|Zooplankton: Excretion Factor
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,073: Line 4,253:
 
|ZINGMAX
 
|ZINGMAX
 
|Zooplankton: Maximun ingestion rate
 
|Zooplankton: Maximun ingestion rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,080: Line 4,263:
 
|ZOCILASS
 
|ZOCILASS
 
|Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton
 
|Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,087: Line 4,273:
 
|ZOCRATIO
 
|ZOCRATIO
 
|Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
 
|Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,094: Line 4,283:
 
|ZOO
 
|ZOO
 
|Zooplankton: Processes Simulation
 
|Zooplankton: Processes Simulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,101: Line 4,293:
 
|ZOOEFFCAPCIL
 
|ZOOEFFCAPCIL
 
|Zooplankton: Capture efficiency of microzoolankton
 
|Zooplankton: Capture efficiency of microzoolankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,108: Line 4,303:
 
|ZOOEFFCAPHY
 
|ZOOEFFCAPHY
 
|Zooplankton: Capture efficiency of phytoplankton
 
|Zooplankton: Capture efficiency of phytoplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,115: Line 4,313:
 
|ZOOPREYMIN
 
|ZOOPREYMIN
 
|Zooplankton: Minimum prey concentration for grazing
 
|Zooplankton: Minimum prey concentration for grazing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,122: Line 4,323:
 
|ZOPHYASS
 
|ZOPHYASS
 
|Zooplankton: Assimilation coefficient of flagellates by mesozooplankton
 
|Zooplankton: Assimilation coefficient of flagellates by mesozooplankton
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,129: Line 4,333:
 
|ZPREDMOR
 
|ZPREDMOR
 
|Zooplankton:  Predatory mortality rate (predation by higher trophic levels)
 
|Zooplankton:  Predatory mortality rate (predation by higher trophic levels)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,136: Line 4,343:
 
|ZRATIONC
 
|ZRATIONC
 
|Zooplankton: Nitrogen/Carbon Ratio
 
|Zooplankton: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,143: Line 4,353:
 
|ZRATIOPC
 
|ZRATIOPC
 
|Zooplankton: Phosphorus/Carbon ratio
 
|Zooplankton: Phosphorus/Carbon ratio
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,150: Line 4,363:
 
|ZREFRESP
 
|ZREFRESP
 
|Zooplankton: Carbon consumption rate by respiration  
 
|Zooplankton: Carbon consumption rate by respiration  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,157: Line 4,373:
 
|ZSOLEXCR
 
|ZSOLEXCR
 
|Zooplankton: Soluble inorganic fraction in excretions
 
|Zooplankton: Soluble inorganic fraction in excretions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,162: Line 4,381:
  
 
==MOHID Base 2==
 
==MOHID Base 2==
 +
 
=== Module Atmosphere===
 
=== Module Atmosphere===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleAtmosphere.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleAtmosphere.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 3,173: Line 4,392:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 3,178: Line 4,400:
 
|BOX_TIME_SERIE
 
|BOX_TIME_SERIE
 
|Output of property values in time series files, integrated in boxes.
 
|Output of property values in time series files, integrated in boxes.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,185: Line 4,410:
 
|DATA_COLUMN
 
|DATA_COLUMN
 
|Number of column in the time series file.
 
|Number of column in the time series file.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,192: Line 4,420:
 
|FILENAME
 
|FILENAME
 
|Path to the file with the time series.
 
|Path to the file with the time series.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,199: Line 4,430:
 
|IRRIGATION
 
|IRRIGATION
 
|Property added by irrigation
 
|Property added by irrigation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,206: Line 4,440:
 
|NO_INTERPOLATION
 
|NO_INTERPOLATION
 
|This keyword is deprecated. Use accumulated values use instead.
 
|This keyword is deprecated. Use accumulated values use instead.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,213: Line 4,450:
 
|ACCUMULATE_VALUES  
 
|ACCUMULATE_VALUES  
 
|Use mm with ACCUMULATE_VALUES = 1.
 
|Use mm with ACCUMULATE_VALUES = 1.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,220: Line 4,460:
 
|USE_ORIGINAL_VALUES  
 
|USE_ORIGINAL_VALUES  
 
|use a FLUX (ex. mm/hour) with USE_ORIGINAL_VALUES = 1.
 
|use a FLUX (ex. mm/hour) with USE_ORIGINAL_VALUES = 1.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,227: Line 4,470:
 
|OUTPUT_HDF
 
|OUTPUT_HDF
 
|Output of property values in HDF files.
 
|Output of property values in HDF files.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,234: Line 4,480:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Output instants of HDF5 file.
 
|Output instants of HDF5 file.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="2" |Base 2
−
|Atmosphere
+
| rowspan="2" |Atmosphere
 
| rowspan="2" | RADIATION_METHOD
 
| rowspan="2" | RADIATION_METHOD
 
| rowspan="2" | Method to compute solar radiation
 
| rowspan="2" | Method to compute solar radiation
 
|1
 
|1
 
|Climatologic solar radiation algorithm
 
|Climatologic solar radiation algorithm
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 2
 
−
|Atmosphere
 
 
|2
 
|2
 
|CEQUALW2 solar radiation algorithm
 
|CEQUALW2 solar radiation algorithm
Line 3,253: Line 4,503:
 
|RANDOM_COMPONENT
 
|RANDOM_COMPONENT
 
|Random component of property.
 
|Random component of property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,260: Line 4,513:
 
|STATISTICS
 
|STATISTICS
 
|Choose to compute the statistics of this property
 
|Choose to compute the statistics of this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,267: Line 4,523:
 
|STATISTICS_FILE
 
|STATISTICS_FILE
 
|Path to the file with the statistics definition for this property.
 
|Path to the file with the statistics definition for this property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,274: Line 4,533:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Output of property values in time series files.
 
|Output of property values in time series files.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,281: Line 4,543:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to the file that has the time series location characteristics.
 
|Path to the file that has the time series location characteristics.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,288: Line 4,553:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 3,296: Line 4,560:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 3,301: Line 4,568:
 
|DISPLACEMENT_LIMIT
 
|DISPLACEMENT_LIMIT
 
|the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1)
 
|the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,308: Line 4,578:
 
|DOMAINDEPTH
 
|DOMAINDEPTH
 
|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
 
|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,315: Line 4,588:
 
|EMPTY_TOP_LAYERS
 
|EMPTY_TOP_LAYERS
 
|Number of empty layers counting from top
 
|Number of empty layers counting from top
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,322: Line 4,598:
 
|EQUIDISTANT
 
|EQUIDISTANT
 
|Thickness of layers admitting that all the layers have the same thickness
 
|Thickness of layers admitting that all the layers have the same thickness
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="2" |Base 2
−
|Geometry
+
| rowspan="2" |Geometry
 
| rowspan="2" |FACES_OPTION
 
| rowspan="2" |FACES_OPTION
 
| rowspan="2" |Methodology to compute areas between cells
 
| rowspan="2" |Methodology to compute areas between cells
 
|2
 
|2
 
|Average thickness of the adjacent water columns (advised option)
 
|Average thickness of the adjacent water columns (advised option)
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|3
 
|3
 
|Minimum thickness of the adjacent water columns (advanced user option)
 
|Minimum thickness of the adjacent water columns (advanced user option)
Line 3,340: Line 4,620:
 
|Geometry
 
|Geometry
 
|GRIDMOVEMENTDUMP
 
|GRIDMOVEMENTDUMP
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,348: Line 4,631:
 
|ID
 
|ID
 
|Domain ID
 
|Domain ID
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,355: Line 4,641:
 
|IMPER_COEF_U
 
|IMPER_COEF_U
 
|U Coefficient to compute faces areas in U points
 
|U Coefficient to compute faces areas in U points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,362: Line 4,651:
 
|IMPER_COEF_V
 
|IMPER_COEF_V
 
|V Coefficient to compute faces areas in V points
 
|V Coefficient to compute faces areas in V points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,369: Line 4,661:
 
|IMPER_COEFX_U
 
|IMPER_COEFX_U
 
|X_U Coefficient to compute faces areas in U points
 
|X_U Coefficient to compute faces areas in U points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,376: Line 4,671:
 
|IMPER_COEFX_V
 
|IMPER_COEFX_V
 
|X_V Coefficient to compute faces areas in V points
 
|X_V Coefficient to compute faces areas in V points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,383: Line 4,681:
 
|IMPERMEABILITY
 
|IMPERMEABILITY
 
|Consider impermeable cell faces
 
|Consider impermeable cell faces
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="2" |Base 2
−
|Geometry
+
| rowspan="2" |Geometry
 
| rowspan="2" |INITIALIZATION_METHOD
 
| rowspan="2" |INITIALIZATION_METHOD
 
| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
 
| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
 
|CARTESIAN
 
|CARTESIAN
 
|Cartesian type coordinates
 
|Cartesian type coordinates
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|SIGMA
 
|SIGMA
 
|Sigma type coordinates  
 
|Sigma type coordinates  
Line 3,402: Line 4,704:
 
|LAYERS
 
|LAYERS
 
|Number of layers
 
|Number of layers
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,409: Line 4,714:
 
|LAYERTHICKNESS
 
|LAYERTHICKNESS
 
|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers
 
|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,416: Line 4,724:
 
|MIN_TOP_THICKNESS
 
|MIN_TOP_THICKNESS
 
|minimum thickness of collapsing cells of the Harmonic domain
 
|minimum thickness of collapsing cells of the Harmonic domain
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,423: Line 4,734:
 
|MINEVOLVELAYERTHICKNESS
 
|MINEVOLVELAYERTHICKNESS
 
|Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1)
 
|Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,430: Line 4,744:
 
|MINIMUMDEPTH
 
|MINIMUMDEPTH
 
|water column thickness below which the cell is considered uncovered
 
|water column thickness below which the cell is considered uncovered
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,437: Line 4,754:
 
|MININITIALLAYERTHICKNESS
 
|MININITIALLAYERTHICKNESS
 
|minimal thickness of the bottom cells
 
|minimal thickness of the bottom cells
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|REMOVE_LAND_BOTTOM_LAYERS
 +
|Remove bottom layers with no water cells
 +
|
 
|
 
|
 
|
 
|
Line 3,444: Line 4,772:
 
|TOLERANCEDEPTH
 
|TOLERANCEDEPTH
 
|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
 
|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,451: Line 4,782:
 
|TOTALTHICKNESS
 
|TOTALTHICKNESS
 
|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
 
|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="8" |Base 2
−
|Geometry
+
| rowspan="8" |Geometry
 
| rowspan="8" |TYPE
 
| rowspan="8" |TYPE
 
| rowspan="8" |Type of vertical coordinate of the domain
 
| rowspan="8" |Type of vertical coordinate of the domain
 
|CARTESIAN
 
|CARTESIAN
 
|Cartesian coordinates
 
|Cartesian coordinates
 +
| rowspan="8" |
 +
| rowspan="8" |
 +
| rowspan="8" |
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|CARTESIANTOP
 
|CARTESIANTOP
 
|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
 
|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|FIXSEDIMENT
 
|FIXSEDIMENT
 
|Fixed Sediment coordinates
 
|Fixed Sediment coordinates
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|FIXSPACING
 
|FIXSPACING
 
|Fixed Spacing coordinates - used to study flows close to the bottom
 
|Fixed Spacing coordinates - used to study flows close to the bottom
 
|-
 
|-
−
| Base 2
+
|HARMONIC
−
|Geometry
 
−
|HARMONIC
 
 
|Harmonic coordinates - the horizontal faces close to the surface
 
|Harmonic coordinates - the horizontal faces close to the surface
 
expand and collapse depending on the variation of the surface elevation. This
 
expand and collapse depending on the variation of the surface elevation. This
 
coordinate was implemented in the geometry module to simulate reservoirs.
 
coordinate was implemented in the geometry module to simulate reservoirs.
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|LAGRANGIAN
 
|LAGRANGIAN
 
|Lagrangian coordinates - moves the upper and
 
|Lagrangian coordinates - moves the upper and
 
lower faces with the vertical flow velocity.
 
lower faces with the vertical flow velocity.
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|SIGMA
 
|SIGMA
 
|Sigma coordinates
 
|Sigma coordinates
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|SIGMATOP
 
|SIGMATOP
 
|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
 
|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
Line 3,503: Line 4,826:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleBoxDif.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleBoxDif.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 3,511: Line 4,833:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 3,516: Line 4,841:
 
|OUTPUT_FILE
 
|OUTPUT_FILE
 
|Output file location
 
|Output file location
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,523: Line 4,851:
 
|TYPE
 
|TYPE
 
|Coordinate Type
 
|Coordinate Type
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,530: Line 4,861:
 
|WRITE_BOXES
 
|WRITE_BOXES
 
|Option to write boxes output file
 
|Option to write boxes output file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module FillMatrix===
 
=== Module FillMatrix===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleFillMatrix.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleFillMatrix.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 3,544: Line 4,878:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 3,549: Line 4,886:
 
|BOXES_VALUES                         
 
|BOXES_VALUES                         
 
|Sequence of values for each box starting from box 1.  
 
|Sequence of values for each box starting from box 1.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,556: Line 4,896:
 
|CoefA
 
|CoefA
 
|Coeficient to compute analytical profile.  
 
|Coeficient to compute analytical profile.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,563: Line 4,906:
 
|CoefB
 
|CoefB
 
|Coeficient to compute analytical profile
 
|Coeficient to compute analytical profile
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,570: Line 4,916:
 
|DATA_COLUMN  
 
|DATA_COLUMN  
 
|DATA_COLUMN is the number of the relevant column in the time series file.  
 
|DATA_COLUMN is the number of the relevant column in the time series file.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,577: Line 4,926:
 
|DEFAULTVALUE
 
|DEFAULTVALUE
 
|Default value when INITIALIZATION_METHOD is used.  
 
|Default value when INITIALIZATION_METHOD is used.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,584: Line 4,936:
 
|DEPTH_PROFILE
 
|DEPTH_PROFILE
 
|Sequence of depth values. Used with PROFILE option.
 
|Sequence of depth values. Used with PROFILE option.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="4" |Base 2
−
|FillMatrix
+
| rowspan="4" |FillMatrix
−
| rowspan="4" | FILE_IN_TIME
+
| rowspan="4" |FILE_IN_TIME
−
| rowspan="4" | Defines the kind of reading operation performed in time to modify the field  
+
| rowspan="4" |Defines the kind of reading operation performed in time to modify the field  
 
|NONE
 
|NONE
 
|Matrix is not modified from reading values from file
 
|Matrix is not modified from reading values from file
 +
| rowspan="4" |
 +
| rowspan="4" |
 +
| rowspan="4" |
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|HDF
 
|HDF
 
|Reads data from an HDF5 file. There are restrictions regarding file format:
 
|Reads data from an HDF5 file. There are restrictions regarding file format:
Line 3,604: Line 4,960:
 
5) Time data set must also contain dates for a period of the same or greater duration of the simulation.
 
5) Time data set must also contain dates for a period of the same or greater duration of the simulation.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|PROFILE_TIME_SERIE
 
|PROFILE_TIME_SERIE
 
|Read solution from various profiles in time
 
|Read solution from various profiles in time
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|TIMESERIE
 
|TIMESERIE
 
|The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN.
 
|The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN.
Line 3,618: Line 4,970:
 
|FILENAME
 
|FILENAME
 
|Path to the file containing imposed data
 
|Path to the file containing imposed data
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,625: Line 4,980:
 
|FILENAME_DEFAULT
 
|FILENAME_DEFAULT
 
|Path to the file containing data for initialization of default value.
 
|Path to the file containing data for initialization of default value.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,632: Line 4,990:
 
|HDF_FIELD_NAME
 
|HDF_FIELD_NAME
 
|HDF5 group name
 
|HDF5 group name
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,639: Line 5,000:
 
|INITIALIZATION_DEFAULT
 
|INITIALIZATION_DEFAULT
 
|Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
 
|Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="9" |Base 2
−
|FillMatrix
+
| rowspan="9" |FillMatrix
−
| rowspan="9" | INITIALIZATION_METHOD
+
| rowspan="9" |INITIALIZATION_METHOD
−
| rowspan="9" | Initial condition data input method.  
+
| rowspan="9" |Initial condition data input method.  
 
|ANALYTIC PROFILE
 
|ANALYTIC PROFILE
 
|Initialization made by an analytical vertical profile.
 
|Initialization made by an analytical vertical profile.
 +
| rowspan="9" |
 +
| rowspan="9" |
 +
| rowspan="9" |
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|ASCII_FILE
 
|ASCII_FILE
 
|Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.
 
|Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.
 
If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.
 
If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|BOXES
 
|BOXES
 
|Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
 
|Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|CONSTANT
 
|CONSTANT
 
|Constant value for all domain.
 
|Constant value for all domain.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|HDF
 
|HDF
 
|Reads initial field from a HDF file. Field is interpolated in time if necessary.
 
|Reads initial field from a HDF file. Field is interpolated in time if necessary.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|LAYERS
 
|LAYERS
 
|Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword.
 
|Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|PROFILE
 
|PROFILE
 
|Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
 
|Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|PROFILE_TIMESERIE
 
|PROFILE_TIMESERIE
 
|Read initial field from various profiles.
 
|Read initial field from various profiles.
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|TIMESERIE
 
|TIMESERIE
 
|Reads initial values from a time series file. If necessary the initial value is interpolated in time.
 
|Reads initial values from a time series file. If necessary the initial value is interpolated in time.
Line 3,694: Line 5,045:
 
|LAYERS_VALUES
 
|LAYERS_VALUES
 
|Sequence of values for each layer starting from the bottom layer.  
 
|Sequence of values for each layer starting from the bottom layer.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,701: Line 5,055:
 
|MULTIPLYING_FACTOR
 
|MULTIPLYING_FACTOR
 
|Data field multiplying factor. HDF5 only.
 
|Data field multiplying factor. HDF5 only.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,708: Line 5,065:
 
|NDEPTHS
 
|NDEPTHS
 
|Number of values that the define the profile.
 
|Number of values that the define the profile.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="2" |Base 2
−
|FillMatrix
+
| rowspan="2" |FillMatrix
−
| rowspan="2" | PROFILE_TYPE
+
| rowspan="2" |PROFILE_TYPE
−
| rowspan="2" | Type of analytical profile
+
| rowspan="2" |Type of analytical profile
 
|EXPONENTIAL
 
|EXPONENTIAL
 
|Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
 
|Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 2
 
−
|FillMatrix
 
 
|LINEAR
 
|LINEAR
 
|Profile has a linear format, given by the following expression:  
 
|Profile has a linear format, given by the following expression:  
Line 3,728: Line 5,089:
 
|PROFILE_VALUES
 
|PROFILE_VALUES
 
|Sequence of values that constitute the profile.  
 
|Sequence of values that constitute the profile.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,735: Line 5,099:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGeometry.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 3,743: Line 5,106:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 3,748: Line 5,114:
 
|DISPLACEMENT_LIMIT
 
|DISPLACEMENT_LIMIT
 
|the maximum displacement that the model allow cell faces to move vertically in meters
 
|the maximum displacement that the model allow cell faces to move vertically in meters
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,755: Line 5,124:
 
|DOMAINDEPTH
 
|DOMAINDEPTH
 
|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
 
|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,762: Line 5,134:
 
|EMPTY_TOP_LAYERS
 
|EMPTY_TOP_LAYERS
 
|Number of empty layers counting from top
 
|Number of empty layers counting from top
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,769: Line 5,144:
 
|EQUIDISTANT
 
|EQUIDISTANT
 
|Thickness of layers admitting that all the layers have the same thickness
 
|Thickness of layers admitting that all the layers have the same thickness
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="2" |Base 2
−
|Geometry
+
| rowspan="2" |Geometry
 
| rowspan="2" |FACES_OPTION
 
| rowspan="2" |FACES_OPTION
 
| rowspan="2" |Methodology to compute areas between cells
 
| rowspan="2" |Methodology to compute areas between cells
 
|2
 
|2
 
|Average thickness of the adjacent water columns (advised option)
 
|Average thickness of the adjacent water columns (advised option)
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|3
 
|3
 
|Minimum thickness of the adjacent water columns (advanced user option)
 
|Minimum thickness of the adjacent water columns (advanced user option)
Line 3,787: Line 5,166:
 
|Geometry
 
|Geometry
 
|GRIDMOVEMENTDUMP
 
|GRIDMOVEMENTDUMP
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,795: Line 5,177:
 
|ID
 
|ID
 
|Domain ID
 
|Domain ID
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,802: Line 5,187:
 
|IMPER_COEF_U
 
|IMPER_COEF_U
 
|U Coefficient to compute faces areas in U points
 
|U Coefficient to compute faces areas in U points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,809: Line 5,197:
 
|IMPER_COEF_V
 
|IMPER_COEF_V
 
|V Coefficient to compute faces areas in V points
 
|V Coefficient to compute faces areas in V points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,816: Line 5,207:
 
|IMPER_COEFX_U
 
|IMPER_COEFX_U
 
|X_U Coefficient to compute faces areas in U points
 
|X_U Coefficient to compute faces areas in U points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,823: Line 5,217:
 
|IMPER_COEFX_V
 
|IMPER_COEFX_V
 
|X_V Coefficient to compute faces areas in V points
 
|X_V Coefficient to compute faces areas in V points
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,832: Line 5,229:
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Base 2
+
|
−
|Geometry
+
|
 +
|-
 +
| rowspan="2" |Base 2
 +
| rowspan="2" |Geometry
 
| rowspan="2" |INITIALIZATION_METHOD
 
| rowspan="2" |INITIALIZATION_METHOD
 
| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
 
| rowspan="2" |Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity
 
|CARTESIAN
 
|CARTESIAN
 
|Cartesian type coordinates
 
|Cartesian type coordinates
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|SIGMA
 
|SIGMA
 
|Sigma type coordinates  
 
|Sigma type coordinates  
Line 3,849: Line 5,250:
 
|LAGRANGIAN               
 
|LAGRANGIAN               
 
|Indicates that the defined domain can evolve in size as a lagrangian domain
 
|Indicates that the defined domain can evolve in size as a lagrangian domain
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,856: Line 5,260:
 
|LAYERS
 
|LAYERS
 
|Number of layers
 
|Number of layers
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,863: Line 5,270:
 
|LAYERTHICKNESS
 
|LAYERTHICKNESS
 
|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers
 
|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,870: Line 5,280:
 
|MIN_TOP_THICKNESS
 
|MIN_TOP_THICKNESS
 
|minimum thickness of colapsing cells of the Harmonic domain
 
|minimum thickness of colapsing cells of the Harmonic domain
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,877: Line 5,290:
 
|MINEVOLVELAYERTHICKNESS
 
|MINEVOLVELAYERTHICKNESS
 
|coeficient which indicates how much a Lagrangian layer
 
|coeficient which indicates how much a Lagrangian layer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,884: Line 5,300:
 
|MINIMUMDEPTH
 
|MINIMUMDEPTH
 
|water column thickness below which the cell is considered uncovered
 
|water column thickness below which the cell is considered uncovered
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,891: Line 5,310:
 
|MININITIALLAYERTHICKNESS
 
|MININITIALLAYERTHICKNESS
 
|minimal thickness of the bottom cells
 
|minimal thickness of the bottom cells
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,898: Line 5,320:
 
|TOLERANCEDEPTH
 
|TOLERANCEDEPTH
 
|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
 
|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,905: Line 5,330:
 
|TOTALTHICKNESS
 
|TOTALTHICKNESS
 
|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
 
|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="8" |Base 2
−
|Geometry
+
| rowspan="8" |Geometry
 
| rowspan="8" |TYPE
 
| rowspan="8" |TYPE
 
| rowspan="8" |Type of vertical coordinate of the domain
 
| rowspan="8" |Type of vertical coordinate of the domain
 
|CARTESIAN
 
|CARTESIAN
 
|Cartesian coordinates
 
|Cartesian coordinates
 +
| rowspan="8" |
 +
| rowspan="8" |
 +
| rowspan="8" |
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|CARTESIANTOP
 
|CARTESIANTOP
 
|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
 
|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|FIXSEDIMENT
 
|FIXSEDIMENT
 
|Fixed Sediment coordinates
 
|Fixed Sediment coordinates
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|FIXSPACING
 
|FIXSPACING
 
|Fixed Spacing coordinates - used to study flows close to the bottom
 
|Fixed Spacing coordinates - used to study flows close to the bottom
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|HARMONIC
 
|HARMONIC
 
|Harmonic coordinates - the horizontal faces close to the surface
 
|Harmonic coordinates - the horizontal faces close to the surface
Line 3,937: Line 5,360:
 
coordinate was implemented in the geometry module to simulate reservoirs.
 
coordinate was implemented in the geometry module to simulate reservoirs.
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|LAGRANGIAN
 
|LAGRANGIAN
 
|Lagrangian coordinates - moves the upper and
 
|Lagrangian coordinates - moves the upper and
 
lower faces with the vertical flow velocity.
 
lower faces with the vertical flow velocity.
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|SIGMA
 
|SIGMA
 
|Sigma coordinates
 
|Sigma coordinates
 
|-
 
|-
−
| Base 2
 
−
|Geometry
 
 
|SIGMATOP
 
|SIGMATOP
 
|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
 
|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
Line 3,957: Line 5,374:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGridData.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleGridData.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 3,965: Line 5,381:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 3,970: Line 5,389:
 
|EVOLUTION
 
|EVOLUTION
 
|Gets if the bathymetry can change in time
 
|Gets if the bathymetry can change in time
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,977: Line 5,399:
 
|EVOLUTION_FILE
 
|EVOLUTION_FILE
 
|Path to file that describes the time evolution.
 
|Path to file that describes the time evolution.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,984: Line 5,409:
 
|FILL_VALUE
 
|FILL_VALUE
 
|Default value for points with no data
 
|Default value for points with no data
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,991: Line 5,419:
 
|PROPERTY_NAME
 
|PROPERTY_NAME
 
|Name of the property that will change in time
 
|Name of the property that will change in time
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 3,998: Line 5,429:
 
|TYPE_ZUV
 
|TYPE_ZUV
 
|Matrix Types (Centered in Z, U or V)
 
|Matrix Types (Centered in Z, U or V)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module HorizontalGrid===
 
=== Module HorizontalGrid===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleHorizontalGrid.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleHorizontalGrid.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 4,012: Line 5,446:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 4,017: Line 5,454:
 
|CONSTANT_SPACING_X
 
|CONSTANT_SPACING_X
 
|Check if the spacing in X is constant
 
|Check if the spacing in X is constant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,024: Line 5,464:
 
|CONSTANT_SPACING_Y
 
|CONSTANT_SPACING_Y
 
|Check if constant Spacing in y is used
 
|Check if constant Spacing in y is used
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,031: Line 5,474:
 
|COORD_TIP
 
|COORD_TIP
 
|Coordinate type of grid
 
|Coordinate type of grid
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,038: Line 5,484:
 
|DX
 
|DX
 
|Grid spacing dx
 
|Grid spacing dx
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,045: Line 5,494:
 
|DY
 
|DY
 
|Gets DY spacing
 
|Gets DY spacing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,052: Line 5,504:
 
|GRID_ANGLE
 
|GRID_ANGLE
 
|Grid angle with north
 
|Grid angle with north
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,059: Line 5,514:
 
|ILB_IUB
 
|ILB_IUB
 
|minimum and maximum i in grid
 
|minimum and maximum i in grid
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,066: Line 5,524:
 
|JLB_JUB
 
|JLB_JUB
 
|minimum and maximum J in grid
 
|minimum and maximum J in grid
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,073: Line 5,534:
 
|LATITUDE
 
|LATITUDE
 
|Latitude of grid
 
|Latitude of grid
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,080: Line 5,544:
 
|LONGITUDE
 
|LONGITUDE
 
|Longitude of grid
 
|Longitude of grid
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,087: Line 5,554:
 
|ORIGIN
 
|ORIGIN
 
|X and Y origin of grid
 
|X and Y origin of grid
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,094: Line 5,564:
 
|ZONE
 
|ZONE
 
|UTM zone of coordinate
 
|UTM zone of coordinate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module Interpolation===
 
=== Module Interpolation===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleInterpolation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleInterpolation.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 4,108: Line 5,581:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
 
|Interpolation
 
|Interpolation
 
|EXTRAPOLATE_2D
 
|EXTRAPOLATE_2D
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,120: Line 5,599:
 
|EXTRAPOLATE_PROFILE
 
|EXTRAPOLATE_PROFILE
 
|Check if the user wants to extrapolate in the vertical
 
|Check if the user wants to extrapolate in the vertical
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,127: Line 5,609:
 
|IWD_N
 
|IWD_N
 
|Coefficient use in the inverse weight interpolation
 
|Coefficient use in the inverse weight interpolation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,135: Line 5,620:
 
|Type of kernel used in the convolution interpolations  
 
|Type of kernel used in the convolution interpolations  
 
|Exponential
 
|Exponential
 +
|
 +
|
 +
|
 
|
 
|
 
|-
 
|-
Line 4,142: Line 5,630:
 
|Type of kernel used in the convolution interpolations  
 
|Type of kernel used in the convolution interpolations  
 
|Gaussian
 
|Gaussian
 +
|
 +
|
 +
|
 
|
 
|
 
|-
 
|-
Line 4,148: Line 5,639:
 
|MAX_DISTANCE
 
|MAX_DISTANCE
 
|Max distance for points to be consider in the inverse weight interpolation
 
|Max distance for points to be consider in the inverse weight interpolation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,155: Line 5,649:
 
|MAX_ITERATIONS
 
|MAX_ITERATIONS
 
|Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.
 
|Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="6" |Base 2
−
|Interpolation
+
| rowspan="6" |Interpolation
 
| rowspan="6" |METHODOLOGY
 
| rowspan="6" |METHODOLOGY
 
| rowspan="6" |The methodology used in the interpolation process
 
| rowspan="6" |The methodology used in the interpolation process
 
|1
 
|1
 
|Conservative convolution
 
|Conservative convolution
 +
| rowspan="6" |
 +
| rowspan="6" |
 +
| rowspan="6" |
 
|-
 
|-
−
| Base 2
 
−
|Interpolation
 
 
|2
 
|2
 
|NonConservative convolution
 
|NonConservative convolution
 
|-
 
|-
−
| Base 2
+
|3
−
|Interpolation
 
−
|3
 
 
|Triangulation
 
|Triangulation
 
|-
 
|-
−
| Base 2
 
−
|Interpolation
 
 
|4
 
|4
 
|Bilinear
 
|Bilinear
 
|-
 
|-
−
| Base 2
 
−
|Interpolation
 
 
|5
 
|5
 
|Spline 2D
 
|Spline 2D
 
|-
 
|-
−
| Base 2
 
−
|Interpolation
 
 
|6
 
|6
 
|Inverse weight
 
|Inverse weight
Line 4,194: Line 5,684:
 
|N_DIM
 
|N_DIM
 
|The number of dimensions of the field to interpolate
 
|The number of dimensions of the field to interpolate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,201: Line 5,694:
 
|N_GROUPS
 
|N_GROUPS
 
|Number of groups generated for each dimension in the data-oriented convolution.
 
|Number of groups generated for each dimension in the data-oriented convolution.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Base 2
+
| rowspan="3" |Base 2
−
|Interpolation
+
| rowspan="3" |Interpolation
 
| rowspan="3" |NC_TYPE
 
| rowspan="3" |NC_TYPE
 
| rowspan="3" |Checks what class of NonConservative convolution process to use
 
| rowspan="3" |Checks what class of NonConservative convolution process to use
 
|1
 
|1
 
|User defined kernel for the NonConservative convolution  
 
|User defined kernel for the NonConservative convolution  
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Base 2
 
−
|Interpolation
 
 
|2
 
|2
 
|Smoothes the field using the PHI value
 
|Smoothes the field using the PHI value
 
|-
 
|-
−
| Base 2
 
−
|Interpolation
 
 
|3
 
|3
 
|Data
 
|Data
Line 4,225: Line 5,720:
 
|PHI
 
|PHI
 
|Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
 
|Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,232: Line 5,730:
 
|POLI_DEGREE_VERT
 
|POLI_DEGREE_VERT
 
|The order of the polynomial use to interpolate in the vertical  
 
|The order of the polynomial use to interpolate in the vertical  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,239: Line 5,740:
 
|SAMPLE_SIZE
 
|SAMPLE_SIZE
 
|Number of observations needed for the logistic regression in the data-oriented convolution.
 
|Number of observations needed for the logistic regression in the data-oriented convolution.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,246: Line 5,750:
 
|TYPE_ZUV
 
|TYPE_ZUV
 
|Where points are defined in the cell (Z - center; U - Face U; V : Face V)
 
|Where points are defined in the cell (Z - center; U - Face U; V : Face V)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,253: Line 5,760:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleStatistic.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleStatistic.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 4,261: Line 5,767:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Base 2
 
| Base 2
Line 4,266: Line 5,775:
 
|DAILY_STATISTIC
 
|DAILY_STATISTIC
 
|Performs daily integration of statistic values
 
|Performs daily integration of statistic values
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,273: Line 5,785:
 
|GEOMETRIC_MEAN
 
|GEOMETRIC_MEAN
 
|Performs geometric mean calculation for non negative parameters
 
|Performs geometric mean calculation for non negative parameters
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,280: Line 5,795:
 
|GLOBAL_STATISTIC
 
|GLOBAL_STATISTIC
 
|Performs statistic calculation of every timestep
 
|Performs statistic calculation of every timestep
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,287: Line 5,805:
 
|LAYER_DEFINITION
 
|LAYER_DEFINITION
 
|Layer definition
 
|Layer definition
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,294: Line 5,815:
 
|MAX_DEPTH
 
|MAX_DEPTH
 
|Max depth of layer
 
|Max depth of layer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,301: Line 5,825:
 
|MAX_LAYER
 
|MAX_LAYER
 
|Max layer k index
 
|Max layer k index
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,308: Line 5,835:
 
|METHOD_STATISTIC
 
|METHOD_STATISTIC
 
|Way to perform the statistics (full matrix, layers, etc)
 
|Way to perform the statistics (full matrix, layers, etc)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,315: Line 5,845:
 
|MIN_DEPTH
 
|MIN_DEPTH
 
|Minimum depth of layer
 
|Minimum depth of layer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,322: Line 5,855:
 
|MIN_LAYER
 
|MIN_LAYER
 
|Layer lower index start
 
|Layer lower index start
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,329: Line 5,865:
 
|MONTHLY_STATISTIC
 
|MONTHLY_STATISTIC
 
|Performs monthly integration of statistic values
 
|Performs monthly integration of statistic values
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 4,338: Line 5,877:
 
|
 
|
 
|
 
|
−
|}
+
|
 +
|
 +
|
 +
|}
  
 
==MOHID Land==
 
==MOHID Land==
 +
 
=== Module Runoff ===
 
=== Module Runoff ===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunOff.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunOff.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 4,355: Line 5,897:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
−
 
 
|-
 
|-
 
| Land
 
| Land
Line 4,369: Line 5,910:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
| rowspan="3" |HYDRODYNAMIC_APROX
+
|ADVECTION
−
| rowspan="3" |The overland flow routing method.
+
|Connect/disconnect advection
 +
|0/1
 +
|Inactive/Active
 
|1
 
|1
−
|Kinematic Wave
 
−
| rowspan="3" |2
 
−
| rowspan="3" |
 
−
| rowspan="3" |Int
 
−
|-
 
−
| Land
 
−
|Runoff
 
−
|2
 
−
|Diffusion Wave
 
−
|-
 
−
| Land
 
−
|Runoff
 
−
|3
 
−
|Dynamic Wave
 
−
|-
 
−
| Land
 
−
|Runoff
 
−
|MIN_WATER_COLUMN
 
−
|Minimum water column for overland flow
 
 
|
 
|
−
|
+
|Boolean
−
|0.001
 
−
|m
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|STABILIZE
+
|ALLOW_BOUNDARY_INFLOW
−
|Connect/disconnect stability criteria
+
|Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall
 
|0/1
 
|0/1
 
|Inactive/Active
 
|Inactive/Active
Line 4,409: Line 5,930:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|STABILIZE_FACTOR
+
|BOUNDARY_VALUE
−
|Fraction of cell volume allowed for volume variation in one time step
+
|Imposed boundary value
 +
|
 +
|Needed if IMPOSE_BOUNDARY_VALUE : 1
 
|
 
|
−
|Needed if STABILIZE : 1
+
|m
−
|0.1
 
−
|%
 
 
|Real
 
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|MIN_ITERATIONS
+
|DT_FACTOR
−
|Minimum number of internal iteration to start asking for a lower global dt
+
|Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise)
 
|
 
|
 
|
 
|
−
|1
+
|1.25
 
|
 
|
−
|Int
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|MAX_ITERATIONS
+
|DT_SPLIT_FACTOR
−
|Maximum number of internal iterations allowed for the module
+
|Factor to predict next number of iteration
 
|
 
|
 
|
 
|
−
|1024
+
|2.0
 
|
 
|
−
|Int
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|LIMIT_DT_COURANT
+
|DYNAMIC_ADJUST_MANNING
−
|Connect/disconnect limitation of dt by courant number
+
|
 
|0/1
 
|0/1
 
|Inactive/Active
 
|Inactive/Active
Line 4,447: Line 5,968:
 
|Boolean
 
|Boolean
 
|-
 
|-
−
| Land
+
| rowspan="3" |Land
−
|Runoff
+
| rowspan="3" |Runoff
−
|MAX_COURANT
+
| rowspan="3" |HYDRODYNAMIC_APROX
−
|Maximum value for Courant number
+
| rowspan="3" |The overland flow routing method.
−
|
+
|1
−
|Needed if LIMIT_DT_COURANT : 1
+
|Kinematic Wave
−
|1.0
+
| rowspan="3" |2
−
|
+
| rowspan="3" |
−
|Real
+
| rowspan="3" |Integer
 +
|-
 +
|2
 +
|Diffusion Wave
 
|-
 
|-
−
| Land
+
|3
−
|Runoff
+
|Dynamic Wave
−
|DT_FACTOR
 
−
|Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise)
 
−
|
 
−
|
 
−
|1.25
 
−
|
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|DT_SPLIT_FACTOR
+
|HYDRAULIC_RADIUS_MARGINS
−
|Factor to predict next number of iteration
 
 
|
 
|
 +
|0/1
 +
|Inactive/Active
 +
|1
 
|
 
|
−
|2.0
+
|Boolean
−
|
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
Line 4,489: Line 6,006:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|BOUNDARY_VALUE
+
|IMPOSE_MAX_VELOCITY
−
|Imposed boundary value
 
−
|
 
−
|Needed if IMPOSE_BOUNDARY_VALUE : 1
 
−
|
 
−
|m
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Runoff
 
−
|SIMPLE_CHANNEL_FLOW
 
 
|
 
|
 
|0/1
 
|0/1
Line 4,509: Line 6,016:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|ROUTE_D4
+
|LIMIT_DT_COURANT
−
|Connect/disconnect route of water in 8 direction if accumulation cells exist
+
|Connect/disconnect limitation of dt by courant number
 
|0/1
 
|0/1
 
|Inactive/Active
 
|Inactive/Active
Line 4,519: Line 6,026:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|ROUTE_D4_ON_DN
+
|MAX_COURANT
−
|Connect/disconnect route of water in 8 direction on cells that have drainage network
+
|Maximum value for Courant number
−
|0/1
+
|
−
|Inactive/Active
+
|Needed if LIMIT_DT_COURANT : 1
−
|0
+
|1.0
 
|
 
|
−
|Boolean
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|ADVECTION
+
|MAX_ITERATIONS
−
|Connect/disconnect advection
+
|Maximum number of internal iterations allowed for the module
−
|0/1
 
−
|Inactive/Active
 
−
|1
 
 
|
 
|
−
|Boolean
+
|
−
|-
+
|1024
−
| Land
+
|
 +
|Integer
 +
|-
 +
| Land
 +
|Runoff
 +
|MAX_VELOCITY
 +
|
 +
|
 +
|Needed if IMPOSE_MAX_VELOCITY : 1
 +
|0.1
 +
|
 +
|Real
 +
|-
 +
| Land
 +
|Runoff
 +
|MIN_ITERATIONS
 +
|Minimum number of internal iteration to start asking for a lower global dt
 +
|
 +
|
 +
|1
 +
|
 +
|Integer
 +
|-
 +
| Land
 +
|Runoff
 +
|MIN_WATER_COLUMN
 +
|Minimum water column for overland flow
 +
|
 +
|
 +
|0.001
 +
|m
 +
|Real
 +
|-
 +
| Land
 
|Runoff
 
|Runoff
 
|MIN_WATER_COLUMN_ADVECTION
 
|MIN_WATER_COLUMN_ADVECTION
Line 4,547: Line 6,084:
 
|Real
 
|Real
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Runoff
+
| rowspan="2" |Runoff
 
| rowspan="2" |WATER_COLUMN_FACE
 
| rowspan="2" |WATER_COLUMN_FACE
 
| rowspan="2" |Method for computing water column in the face
 
| rowspan="2" |Method for computing water column in the face
Line 4,555: Line 6,092:
 
| rowspan="2" |1
 
| rowspan="2" |1
 
| rowspan="2" |
 
| rowspan="2" |
−
| rowspan="2" |Int
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Runoff
 
 
|2
 
|2
 
|Using maximum level and average of bottom
 
|Using maximum level and average of bottom
Line 4,564: Line 6,099:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|HYDRAULIC_RADIUS_MARGINS
+
|ROUTE_D4
−
|
+
|Connect/disconnect route of water in 8 direction if accumulation cells exist
 
|0/1
 
|0/1
 
|Inactive/Active
 
|Inactive/Active
−
|1
+
|0
 
|
 
|
 
|Boolean
 
|Boolean
Line 4,574: Line 6,109:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|IMPOSE_MAX_VELOCITY
+
|ROUTE_D4_ON_DN
−
|
+
|Connect/disconnect route of water in 8 direction on cells that have drainage network
 
|0/1
 
|0/1
 
|Inactive/Active
 
|Inactive/Active
Line 4,584: Line 6,119:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|MAX_VELOCITY
+
|SIMPLE_CHANNEL_FLOW
−
|
 
−
|
 
−
|Needed if IMPOSE_MAX_VELOCITY : 1
 
−
|0.1
 
−
|
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Runoff
 
−
|DYNAMIC_ADJUST_MANNING
 
 
|
 
|
 
|0/1
 
|0/1
Line 4,604: Line 6,129:
 
| Land
 
| Land
 
|Runoff
 
|Runoff
−
|ALLOW_BOUNDARY_INFLOW
+
|STABILIZE
−
|Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall
+
|Connect/disconnect stability criteria
 
|0/1
 
|0/1
 
|Inactive/Active
 
|Inactive/Active
Line 4,611: Line 6,136:
 
|
 
|
 
|Boolean
 
|Boolean
−
|}
+
|-
−
 
+
| Land
 +
|Runoff
 +
|STABILIZE_FACTOR
 +
|Fraction of cell volume allowed for volume variation in one time step
 +
|
 +
|Needed if STABILIZE : 1
 +
|0.1
 +
|%
 +
|Real
 +
|}
 +
 
 
=== Module Basin ===
 
=== Module Basin ===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleBasin.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleBasin.F90 Source Code]
−
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 4,628: Line 6,161:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
−
 
 
|-
 
|-
 
| Land
 
| Land
Line 4,669: Line 6,201:
 
|
 
|
 
|Boolean
 
|Boolean
 +
|}
 +
 +
=== Module Irrigation ===
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleIrrigation.F90 Source Code]
 +
{| class="wikitable"
 +
|-
 +
! scope="col" |Project
 +
! scope="col" |Module
 +
! scope="col" |Keyword
 +
! scope="col" |Keyword description
 +
! scope="col" |Options
 +
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Land
 
| Land
−
|Basin
+
|Irrigation
−
|
+
|ACTIVE
 
|
 
|
 
|
 
|
 
|
 
|
 +
|1
 
|
 
|
 +
|Boolean
 +
|-
 +
| Land
 +
|Irrigation
 +
|END_INSTANT_THRESHOLD
 
|
 
|
 +
|0-23
 
|
 
|
 +
|23.0
 +
|hours
 +
|Integer
 
|-
 
|-
 
| Land
 
| Land
−
|Basin
+
|Irrigation
−
|
+
|GEAR_DEBIT
−
|
 
−
|
 
−
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 +
|10.0
 +
|mm
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
−
|Basin
+
|Irrigation
−
|
+
|GEAR_EFFICIENCY
−
|
 
−
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 +
|0.85
 
|
 
|
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
−
|Basin
+
|Irrigation
−
|
+
|GEAR_MAX_VEL
−
|
 
−
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 +
|4.0
 
|
 
|
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
−
|Basin
+
|Irrigation
 +
|GEAR_MIN_VEL
 
|
 
|
 
|
 
|
 
|
 
|
 +
|0.2
 
|
 
|
 +
|Real
 +
|-
 +
| rowspan="5"| Land
 +
| rowspan="5"|Irrigation
 +
| rowspan="5"|GEAR_TYPE
 +
| rowspan="5"|
 +
|1
 +
|CenterPivot
 +
| rowspan="5"|1
 +
| rowspan="5"|
 +
| rowspan="5"|Integer
 +
|-
 +
|2
 +
|LinearPivot
 +
|-
 +
|3
 +
|Sprinkler
 +
|-
 +
|4
 +
|GravitySystem
 +
|-
 +
|5
 +
|DripIrrigation
 +
|-
 +
| Land
 +
|Irrigation
 +
|HEAD_TARGET
 
|
 
|
 
|
 
|
 
|
 
|
 +
| -10.0
 +
|m
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
−
|Basin
+
|Irrigation
 +
|HEAD_THRESHOLD
 
|
 
|
 
|
 
|
 
|
 
|
 +
| -6.0
 +
|m
 +
|Real
 +
|-
 +
| Land
 +
|Irrigation
 +
|MAX_CONSECUTIVE_DAYS
 
|
 
|
 
|
 
|
 
|
 
|
−
|
+
|2
−
|}
+
|days
−
 
+
|Integer
−
=== Module Irrigation ===
 
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleIrrigation.F90 Source Code]
 
−
 
 
−
{| class="wikitable"
 
−
 
 
−
|-
 
−
! scope="col" |Project
 
−
! scope="col" |Module
 
−
! scope="col" |Keyword
 
−
! scope="col" |Keyword description
 
−
! scope="col" |Options
 
−
! scope="col" |Option description
 
−
! scope="col" |Default Value
 
−
! scope="col" |Units
 
−
! scope="col" |Type
 
−
 
 
 
|-
 
|-
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|ACTIVE
+
|MAX_DAILY_IRRIGATION_TIME
 
|
 
|
 
|
 
|
 
|
 
|
−
|1
+
|86400.0
−
|
+
|seconds
−
|Boolean
+
|Integer
 
|-
 
|-
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|NAME
+
|MAX_DEPTH_TO_CHECK
 
|
 
|
 
|
 
|
 
|
 
|
 +
|0.2
 +
|m
 +
|Real
 +
|-
 +
| Land
 +
|Irrigation
 +
|MAX_SATURATED_FRACTION
 +
|
 +
|0-1
 
|
 
|
 +
|0.3
 
|
 
|
−
|String
+
|Real
 
|-
 
|-
 
| rowspan="3"| Land
 
| rowspan="3"| Land
Line 4,786: Line 6,377:
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|SINGLE_SYSTEM
+
|MIN_INTERVAL_BETWEEN_EVENTS
 
|
 
|
−
|0/1
 
 
|
 
|
−
|0
 
 
|
 
|
−
|Boolean
+
|86400.0
 +
|seconds
 +
|Integer
 
|-
 
|-
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|HEAD_THRESHOLD
+
|NAME
 
|
 
|
 
|
 
|
−
|
 
−
| -6.0
 
−
|m
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Irrigation
 
−
|HEAD_TARGET
 
 
|
 
|
 
|
 
|
 
|
 
|
−
| -10.0
+
|String
−
|m
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|MIN_INTERVAL_BETWEEN_EVENTS
+
|SATURATION_THRESHOLD
 
|
 
|
 +
|0-1
 
|
 
|
 +
|0.9
 
|
 
|
−
|86400.0
+
|Real
−
|seconds
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|MAX_CONSECUTIVE_DAYS
+
|SINGLE_SYSTEM
 
|
 
|
 +
|0/1
 
|
 
|
 +
|0
 
|
 
|
−
|2
+
|Boolean
−
|days
 
−
|Integer
 
−
|-
 
−
| Land
 
−
|Irrigation
 
−
|MAX_DAILY_IRRIGATION_TIME
 
−
|
 
−
|
 
−
|
 
−
|86400.0
 
−
|seconds
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
Line 4,856: Line 6,427:
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|END_INSTANT_THRESHOLD
+
|START_TIME
 +
|
 +
|
 +
|
 +
|
 
|
 
|
−
|0-23
 
 
|
 
|
−
|23.0
 
−
|hours
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
 
|Irrigation
 
|Irrigation
−
|MAX_DEPTH_TO_CHECK
+
|STOP_TIME
 
|
 
|
 
|
 
|
 
|
 
|
−
|0.2
 
−
|m
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Irrigation
 
−
|SATURATION_THRESHOLD
 
 
|
 
|
−
|0-1
 
 
|
 
|
−
|0.9
 
 
|
 
|
−
|Real
+
|}
 +
 
 +
=== Module PorousMedia ===
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMedia.F90 Source Code]
 +
{| class="wikitable"
 +
|-
 +
! scope="col" |Project
 +
! scope="col" |Module
 +
! scope="col" |Keyword
 +
! scope="col" |Keyword description
 +
! scope="col" |Options
 +
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 +
 
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|MAX_SATURATED_FRACTION
+
|ALPHA
 +
|
 
|
 
|
−
|0-1
 
 
|
 
|
−
|0.3
 
 
|
 
|
 +
|1/m
 
|Real
 
|Real
−
|-
 
−
| rowspan="5"| Land
 
−
| rowspan="5"|Irrigation
 
−
| rowspan="5"|GEAR_TYPE
 
−
| rowspan="5"|
 
−
|1
 
−
|CenterPivot
 
−
| rowspan="5"|1
 
−
| rowspan="5"|
 
−
| rowspan="5"|Integer
 
−
|-
 
−
|2
 
−
|LinearPivot
 
−
|-
 
−
|3
 
−
|Sprinkler
 
−
|-
 
−
|4
 
−
|GravitySystem
 
−
|-
 
−
|5
 
−
|DripIrrigation
 
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|GEAR_EFFICIENCY
+
|BOTTOM_FILE 
 +
|Path to Bottom Topography File
 
|
 
|
 
|
 
|
 +
| -
 
|
 
|
−
|0.85
+
|String
−
|
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|GEAR_DEBIT
+
|CALC_DRAINAGE_FLUX
 
|
 
|
 +
|0/1
 
|
 
|
 +
|1
 
|
 
|
−
|10.0
+
|Boolean
−
|mm
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|GEAR_MIN_VEL
+
|CALC_HORIZONTAL
 
|
 
|
 +
|0/1
 
|
 
|
 +
|1
 
|
 
|
−
|0.2
+
|Boolean
−
|
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|GEAR_MAX_VEL
+
|COMPUTE_HYDRO_PRESSURE
 
|
 
|
 +
|0/1
 
|
 
|
 +
|1
 
|
 
|
−
|4.0
+
|Boolean
−
|
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|START_TIME
+
|COMPUTE_SOIL_FIELD
−
|
 
 
|
 
|
 +
|0/1
 
|
 
|
 +
|0
 
|
 
|
 +
|Boolean
 +
|-
 +
|rowspan=5| Land
 +
|rowspan=5|PorousMedia
 +
|rowspan=5|CONDUTIVITYFACE
 +
|rowspan=5|Way to interpolate conducivity face
 +
|1
 +
|Average
 +
|rowspan=5| 1
 +
|rowspan=5| -
 +
|rowspan=5| Integer
 +
|-
 +
|2
 +
|Maximum
 +
|-
 +
|3
 +
|Minimum
 +
|-
 +
|4
 +
|Weigthed
 +
|-
 +
|5
 +
|Geometric Average
 +
|-
 +
| Land
 +
|PorousMedia
 +
|CONTINUOUS_OUTPUT_FILE
 +
|Writes "famous" iter.log
 +
|0/1
 
|
 
|
 +
|1
 
|
 
|
 +
|Boolean
 
|-
 
|-
 
| Land
 
| Land
−
|Irrigation
+
|PorousMedia
−
|STOP_TIME
+
|CUT_OFF_THETA_HIGH
 +
|Set Theta = ThetaS when Theta > ThetaS
 
|
 
|
 
|
 
|
 +
|1e-15
 
|
 
|
 +
|Real
 +
|-
 +
| Land
 +
|PorousMedia
 +
|CUT_OFF_THETA_LOW
 +
|Disables calculation when Theta is near ThetaR
 
|
 
|
 
|
 
|
 +
|1e-6
 
|
 
|
−
|}
+
|Real
−
 
 
−
=== Module ModulePorousMedia ===
 
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMedia.F90 Source Code]
 
−
 
 
−
{| class="wikitable"
 
−
 
 
 
|-
 
|-
−
! scope="col" |Project
+
| Land
−
! scope="col" |Module
+
|PorousMedia
−
! scope="col" |Keyword
+
|DECREASE_DT
−
! scope="col" |Keyword description
+
|Decrease of DT when iter > MAX_ITER
−
! scope="col" |Options
+
|
−
! scope="col" |Option description
+
|
−
! scope="col" |Default Value
+
|0.70
−
! scope="col" |Units
+
|
−
! scope="col" |Type
+
|Real
−
 
 
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|ALPHA
+
|DN_LINK
 +
|
 
|
 
|
 
|
 
|
Line 5,002: Line 6,592:
 
|
 
|
 
|
 
|
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|BOTTOM_FILE 
+
|DN_LINK_AREA_METHOD
−
|Path to Bottom Topography File
+
|
 +
|
 
|
 
|
 
|
 
|
−
| -
 
 
|
 
|
−
|String
+
|Integer
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|CALC_DRAINAGE_FLUX
+
|FC_K_FACTOR
 +
|
 +
|
 
|
 
|
−
|0/1
 
 
|
 
|
−
|1
 
 
|
 
|
−
|Boolean
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|CALC_HORIZONTAL
+
|GW_SAT_FACTOR
 +
|
 
|
 
|
−
|0/1
 
 
|
 
|
−
|1
+
|0.99
 
|
 
|
−
|Boolean
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|COMPUTE_HYDRO_PRESSURE
+
|HEAD_LIMIT
 
|
 
|
−
|0/1
 
 
|
 
|
−
|1
 
 
|
 
|
−
|Boolean
+
| -100.0
 +
|m
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|COMPUTE_SOIL_FIELD
+
|HORIZONTAL_K_FACTOR 
 +
|Factor for Horizontal Conductivity = Kh / Kv
 
|
 
|
−
|0/1
 
 
|
 
|
−
|0
+
|1
 
|
 
|
−
|Boolean
+
|Real
 
|-
 
|-
−
|rowspan=5| Land
+
| Land
−
|rowspan=5|PorousMedia
+
|PorousMedia
−
|rowspan=5|CONDUTIVITYFACE
+
|ID
−
|rowspan=5|Way to interpolate conducivity face
+
|
−
|1
+
|
−
|Average
+
|
−
|rowspan=5| 1
+
|
−
|rowspan=5| -
+
|
−
|rowspan=5| Integer
+
|Integer
−
|-
 
−
|2
 
−
|Maximum
 
−
|-
 
−
|3
 
−
|Minimum
 
−
|-
 
−
|4
 
−
|Weigthed
 
−
|-
 
−
|5
 
−
|Geometric Average
 
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|CONTINUOUS_OUTPUT_FILE
+
|IGNORE_WATER_COLUMN_ON_EVAP
−
|Writes "famous" iter.log
+
|
 
|0/1
 
|0/1
 
|
 
|
Line 5,088: Line 6,665:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|CUT_OFF_THETA_HIGH
+
|IMPOSE_BOUNDARY_VALUE
−
|Set Theta = ThetaS when Theta > ThetaS
 
 
|
 
|
 +
|0/1
 
|
 
|
−
|1e-15
+
|0
 
|
 
|
−
|Real
+
|Boolean
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|CUT_OFF_THETA_LOW
+
|IMPOSE_BOUNDARY_BOTTOM
−
|Disables calculation when Theta is near ThetaR
 
 
|
 
|
 +
|0/1
 
|
 
|
−
|1e-6
+
|0
 
|
 
|
−
|Real
+
|Boolean
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|DECREASE_DT
+
|IMPOSE_BOUNDARY_BOTTOM_CONDITION
−
|Decrease of DT when iter > MAX_ITER
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
−
|0.70
 
 
|
 
|
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|DN_LINK
+
|INCREASE_DT
−
|
+
|Increase of DT when iter < MIN_ITER
−
|
 
−
|
 
 
|
 
|
 
|
 
|
 +
|1.25
 
|
 
|
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|DN_LINK_AREA_METHOD
+
|INFIL_CONDUCTIVITY
 +
|
 
|
 
|
 
|
 
|
Line 5,134: Line 6,712:
 
|
 
|
 
|
 
|
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|FC_K_FACTOR
+
|L_FIT
 
|
 
|
 
|
 
|
Line 5,148: Line 6,725:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|GW_SAT_FACTOR
+
|LIMIT_EVAP_HEAD
 +
|
 +
|0/1
 +
|
 +
|0
 
|
 
|
 +
|Boolean
 +
|-
 +
| Land
 +
|PorousMedia
 +
|LIMIT_EVAP_WATER_VEL
 
|
 
|
 +
|0/1
 
|
 
|
−
|0.99
+
|0
 
|
 
|
−
|Real
+
|Boolean
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|HEAD_LIMIT
+
|MAX_DTM_FOR_BOUNDARY
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
−
| -100.0
 
−
|m
 
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|HORIZONTAL_K_FACTOR 
+
|MIN_THETAF_FOR_BOUNDARY
−
|Factor for Horizontal Conductivity = Kh / Kv
+
|
 
|
 
|
 
|
 
|
−
|1
+
|0
 
|
 
|
 
|Real
 
|Real
Line 5,178: Line 6,765:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|ID
+
|N_FIT
 
|
 
|
 
|
 
|
Line 5,184: Line 6,771:
 
|
 
|
 
|
 
|
−
|Integer
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|IGNORE_WATER_COLUMN_ON_EVAP
+
|SAT_K
 +
|Saturation conductivity
 
|
 
|
−
|0/1
 
 
|
 
|
−
|1
 
 
|
 
|
−
|Boolean
+
|m/s
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|IMPOSE_BOUNDARY_VALUE
+
|START_WITH_FIELD
−
|
+
|Sets Theta initial Field Capacity
 
|0/1
 
|0/1
 
|
 
|
−
|0
+
|1
 
|
 
|
 
|Boolean
 
|Boolean
Line 5,208: Line 6,795:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|IMPOSE_BOUNDARY_BOTTOM
+
|STOP_ON_WRONG_DATE
−
|
+
|Stops if previous run end is different from actual Start
 
|0/1
 
|0/1
 
|
 
|
−
|0
+
|1
 
|
 
|
 
|Boolean
 
|Boolean
Line 5,218: Line 6,805:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|IMPOSE_BOUNDARY_BOTTOM_CONDITION
+
|THETA_HYDRO_COEF
−
|
 
−
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 +
|0.98
 
|
 
|
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|INCREASE_DT
+
|THETA_R
−
|Increase of DT when iter < MIN_ITER
+
|Residual water content
 +
|
 
|
 
|
 
|
 
|
−
|1.25
 
 
|
 
|
 
|Real
 
|Real
Line 5,238: Line 6,825:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|INFIL_CONDUCTIVITY
+
|THETA_S
−
|
+
|Saturation water content
−
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|L_FIT
+
|THETA_TOLERANCE
−
|
+
|Converge Parameter
−
|
 
 
|
 
|
 
|
 
|
 +
|0.001
 
|
 
|
 
|Real
 
|Real
Line 5,258: Line 6,845:
 
| Land
 
| Land
 
|PorousMedia
 
|PorousMedia
−
|LIMIT_EVAP_HEAD
+
|VEL_HYDRO_COEF
 +
|
 
|
 
|
−
|0/1
 
 
|
 
|
−
|0
+
|1
 
|
 
|
−
|Boolean
+
|Real
 +
|}
 +
 
 +
=== ModulePorousMediaProperties===
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMediaProperties.F90 Source Code]
 +
{| class="wikitable"
 +
|-
 +
! scope="col" |Project
 +
! scope="col" |Module
 +
! scope="col" |Keyword
 +
! scope="col" |Keyword description
 +
! scope="col" |Options
 +
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|PorousMediaProperties
−
|LIMIT_EVAP_WATER_VEL
 
 
|
 
|
−
|0/1
 
−
|
 
−
|0
 
−
|
 
−
|Boolean
 
−
|-
 
−
| Land
 
−
|PorousMedia
 
−
|MAX_DTM_FOR_BOUNDARY
 
 
|
 
|
 
|
 
|
Line 5,287: Line 6,879:
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|PorousMediaProperties
−
|MIN_THETAF_FOR_BOUNDARY
 
−
|
 
−
|
 
 
|
 
|
−
|0
 
 
|
 
|
−
|Real
 
−
|-
 
−
| Land
 
−
|PorousMedia
 
−
|N_FIT
 
 
|
 
|
 
|
 
|
Line 5,304: Line 6,887:
 
|
 
|
 
|
 
|
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|PorousMediaProperties
−
|SAT_K
+
|
−
|Saturation conductivity
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Real
 
−
|-
 
−
| Land
 
−
|PorousMedia
 
−
|START_WITH_FIELD
 
−
|Sets Theta initial Field Capacity
 
−
|0/1
 
 
|
 
|
−
|1
 
 
|
 
|
−
|Boolean
+
|}
 +
 
 +
=== ModuleReservoirs ===
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]
 +
{| class="wikitable"
 
|-
 
|-
−
| Land
+
! scope="col" |Project
−
|PorousMedia
+
! scope="col" |Module
−
|STOP_ON_WRONG_DATE
+
! scope="col" |Keyword
−
|Stops if previous run end is different from actual Start
+
! scope="col" |Keyword description
 +
! scope="col" |Options
 +
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 +
|-
 +
| Land
 +
|Reservoirs
 +
|BOTTOM_FLUXES
 +
|Connect or Disconnect bottom fluxes
 
|0/1
 
|0/1
 
|
 
|
−
|1
+
|0
 
|
 
|
 
|Boolean
 
|Boolean
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|Reservoirs
−
|THETA_HYDRO_COEF
+
|CONTINUOUS
 +
|Computations follow from another simulation
 +
|0/1
 +
|
 
|
 
|
 
|
 
|
 +
|Boolean
 +
|-
 +
| Land
 +
|Reservoirs
 +
|DISCHARGES
 +
|Connect or Disconnect discharges
 +
|0/1
 
|
 
|
−
|0.98
+
|0
 
|
 
|
−
|Real
+
|Boolean
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|Reservoirs
−
|THETA_R
+
|INITIAL_VOLUME_DEFAULT_METHOD
−
|Residual water content
+
|start percentage full
 +
|0/1
 
|
 
|
 
|
 
|
 
|
 
|
−
|
+
|Integer
−
|Real
+
|-
 +
| rowspan="2" |Land
 +
| rowspan="2" |Reservoirs
 +
| rowspan="2" |PROP_COMPUTE_METHOD
 +
| rowspan="2" |Water properties concentration
 +
|1
 +
|instant mixing
 +
| rowspan="2" |1
 +
| rowspan="2" |
 +
| rowspan="2" |Integer
 +
|-
 +
|2
 +
|retention time full mixing
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|Reservoirs
−
|THETA_S
+
|RESERVOIR_FILE
−
|Saturation water content
+
|Path to reservoirs properties  File
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Real
+
|String
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|Reservoirs
−
|THETA_TOLERANCE
+
|START_PERCENTAGE_FULL
−
|Converge Parameter
+
|percentage of max volume at start
 +
|0/100.0
 
|
 
|
 
|
 
|
−
|0.001
 
 
|
 
|
 
|Real
 
|Real
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMedia
+
|Reservoirs
−
|VEL_HYDRO_COEF
+
|SURFACE_FLUXES
 +
|Connect or Disconnect surface fluxes
 +
|0/1
 +
|
 +
|0
 +
|
 +
|Boolean
 +
|-
 +
| Land
 +
|Reservoirs
 +
|TIME_SERIE
 +
|Checks if the user wants to write time series of the particle properties
 +
|0/1
 +
|
 +
|
 +
|
 +
|Boolean
 +
|-
 +
| Land
 +
|Reservoirs
 +
|TIME_SERIE_LOCATION
 +
|Path to time serie locations file
 
|
 
|
 
|
 
|
 
|
 
|
−
|1
 
 
|
 
|
−
|Real
+
|String
 
|}
 
|}
  
−
=== ModulePorousMediaProperties===
+
=== Reservoir Parameters ===
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModulePorousMediaProperties.F90 Source Code]
+
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]
−
 
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 5,402: Line 7,030:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
−
 
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMediaProperties
+
|Reservoirs
 +
|CONSTRUCTION_YEAR
 +
|The year when the reservoir begin to operate
 +
|
 +
|
 
|
 
|
 
|
 
|
 +
|Integer
 +
|-
 +
| Land
 +
|Reservoirs
 +
|COORDINATES
 +
|Longitude and latitude geographic coordenates of the reservoir
 
|
 
|
 
|
 
|
Line 5,415: Line 7,052:
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMediaProperties
+
|Reservoirs
 +
|DN_NODE_ID:
 +
|ID location of the reservoir in the Drainage Network
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Integer
 +
|-
 +
| Land
 +
|Reservoirs
 +
|GRID_I
 +
| Cell row where the reservoir is located in the GRID
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Integer
 
|-
 
|-
 
| Land
 
| Land
−
|PorousMediaProperties
+
|Reservoirs
 +
|GRID_J
 +
| Cell column where the reservoir is located in the GRID
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Integer
 +
|-
 +
| Land
 +
|Reservoirs
 +
|ID
 +
|Reservoir ID
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|}
+
|Integer
−
 
 
−
=== ModuleReservoirs ===
 
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]
 
−
 
 
−
{| class="wikitable"
 
−
 
 
−
|-
 
−
! scope="col" |Project
 
−
! scope="col" |Module
 
−
! scope="col" |Keyword
 
−
! scope="col" |Keyword description
 
−
! scope="col" |Options
 
−
! scope="col" |Option description
 
−
! scope="col" |Default Value
 
−
! scope="col" |Units
 
−
! scope="col" |Type
 
−
 
 
 
|-
 
|-
 
| Land
 
| Land
 
|Reservoirs
 
|Reservoirs
−
|RESERVOIR_FILE
+
|NAME
−
|Path to reservoirs properties  File
+
|Reservoir name
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|String
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|DISCHARGES
 
−
|Connect or Disconnect discharges
 
−
|0/1
 
−
|
 
−
|0
 
 
|
 
|
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
 
|Reservoirs
 
|Reservoirs
−
|SURFACE_FLUXES
+
|MAX_OUTFLOW
−
|Connect or Disconnect surface fluxes
+
|Maximum outflow the reservoir can operate
−
|0/1
 
 
|
 
|
−
|0
 
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|BOTTOM_FLUXES
 
−
|Connect or Disconnect bottom fluxes
 
−
|0/1
 
 
|
 
|
−
|0
 
 
|
 
|
−
|Integer
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Reservoirs
 
|Reservoirs
−
|PROP_COMPUTE_METHOD
+
|MAX_VOLUME
−
|Water properties concentration
+
|maximum volume the reservoir can operate
−
|1/2
 
−
|1 instant mixing; 2 retention time full mixing
 
−
|1
 
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|CONTINUOUS
 
−
|Computations follow from another simulation
 
−
|0/1
 
 
|
 
|
 
|
 
|
 
|
 
|
−
|Integer
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Reservoirs
 
|Reservoirs
−
|INITIAL_VOLUME_DEFAULT_METHOD
+
|MIN_OUTFLOW
−
|start percentage full
+
|Enviromental flow
−
|0/1
 
 
|
 
|
 
|
 
|
 +
|0
 
|
 
|
−
|Integer
+
|Real
 
|-
 
|-
 
| Land
 
| Land
 
|Reservoirs
 
|Reservoirs
−
|START_PERCENTAGE_FULL
+
|MIN_VOLUME
−
|percentage of max volume at start
+
|minimum volume the reservoir operates
−
|0/100.0
+
|
 
|
 
|
 
|
 
|
Line 5,532: Line 7,141:
 
|Real
 
|Real
 
|-
 
|-
−
| Land
+
| rowspan="5" |Land
−
|Reservoirs
+
| rowspan="5" |Reservoirs
−
|TIME_SERIE
+
| rowspan="5" |OPERATION_TYPE
−
|Checks if the user wants to write time series of the particle properties
+
| rowspan="5" |Type of operation for the outflow in the reservoir
−
|0/1
+
|1
−
|
+
|Operation is defined by the water level and the outflow
−
|
+
| rowspan="5" |
−
|
+
| rowspan="5" |
−
|Integer
+
| rowspan="5" |Integer
 +
|-
 +
|2
 +
|Operation is defined by the water level and the outflow as a percentage of the inflow
 +
|-
 +
|3
 +
|Operation is defined by the percentage of reservoir volume and the outflow
 +
|-
 +
|4
 +
|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the inflow
 
|-
 
|-
−
| Land
+
|5
−
|Reservoirs
+
|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the maximum outflow
−
|TIME_SERIE_LOCATION
 
−
|Path to time serie locations file
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|String
 
 
|}
 
|}
  
−
=== Reservoir Parameters ===
+
=== ModuleRunoffProperties===
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleReservoirs.F90 Source Code]
+
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunoffProperties.F90 Source Code]
−
 
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 5,568: Line 7,177:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
−
 
 
|-
 
|-
 
| Land
 
| Land
−
|Reservoirs
+
|RunoffProperties
−
|ID
 
−
|Reservoir ID
 
 
|
 
|
 
|
 
|
−
|
 
−
|
 
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|Name
 
−
|Reservoir name
 
 
|
 
|
 
|
 
|
Line 5,591: Line 7,189:
 
|-
 
|-
 
| Land
 
| Land
−
|Reservoirs
+
|RunoffProperties
−
|CONSTRUCTION_YEAR
 
−
|The year when the reservoir begin to operate
 
−
|
 
−
|
 
 
|
 
|
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|COORDINATES
 
−
|Longitude and latitude geographic coordenates of the reservoir
 
 
|
 
|
 
|
 
|
Line 5,611: Line 7,199:
 
|-
 
|-
 
| Land
 
| Land
−
|Reservoirs
+
|RunoffProperties
−
|GRID_I
 
−
| Cell row where the reservoir is located in the GRID
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|GRID_J
 
−
| Cell column where the reservoir is located in the GRID
 
 
|
 
|
 
|
 
|
 
|
 
|
−
|
+
|}
−
|Integer
+
 
 +
=== ModuleSnow ===
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleSnow.F90 Source Code]
 +
{| class="wikitable"
 
|-
 
|-
−
| Land
+
! scope="col" |Project
−
|Reservoirs
+
! scope="col" |Module
−
|DN_NODE_ID:
+
! scope="col" |Keyword
−
|ID location of the reservoir in the Drainage Network
+
! scope="col" |Keyword description
−
|
+
! scope="col" |Options
−
|
+
! scope="col" |Option description
−
|
+
! scope="col" |Default Value
−
|
+
! scope="col" |Units
−
|Integer
+
! scope="col" |Type
 
|-
 
|-
 
| Land
 
| Land
−
|Reservoirs
+
|Snow
−
|MIN_VOLUME
 
−
|minimum volume the reservoir operates
 
−
|
 
 
|
 
|
 
|
 
|
 
|
 
|
−
|Real
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|MAX_VOLUME
 
−
|maximum volume the reservoir can operate
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Real
 
 
|-
 
|-
 
| Land
 
| Land
−
|Reservoirs
+
|Snow
−
|OPERATION_TYPE
 
−
| rowspan="5"|Type of operation for the outflow in the reservoir
 
−
| 1
 
−
|Operation is defined by the water level and the outflow
 
 
|
 
|
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|OPERATION_TYPE
 
−
|2
 
−
| Operation is defined by the water level and the outflow as a percentage of the inflow
 
 
|
 
|
−
|
 
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|OPERATION_TYPE
 
−
|3
 
−
|Operation is defined by the percentage of reservoir volume and the outflow
 
 
|
 
|
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|OPERATION_TYPE
 
−
|4
 
−
|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the inflow
 
 
|
 
|
 
|
 
|
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
−
|Reservoirs
+
|Snow
−
|OPERATION_TYPE
 
−
|5
 
−
|Operation is defined by the percentage of reservoir volume and the outflow  as a percentage of the maximum outflow
 
 
|
 
|
 
|
 
|
−
|Integer
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|MIN_OUTFLOW
 
−
|Enviromental flow
 
 
|
 
|
 
|
 
|
−
|0
 
 
|
 
|
−
|Real
 
−
|-
 
−
| Land
 
−
|Reservoirs
 
−
|MAX_OUTFLOW
 
−
|Maximum outflow the reservoir can operate
 
 
|
 
|
 
|
 
|
−
|
 
−
|
 
−
|Real
 
 
|}
 
|}
  
−
=== ModuleRunoffProperties===
+
=== ModuleVegetation ===
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleRunoffProperties.F90 Source Code]
 
  
 +
==== Vegetation.dat ====
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 5,745: Line 7,272:
 
|-
 
|-
 
| Land
 
| Land
−
|RunoffProperties
+
|Vegetation
−
|
+
|ADJUST_RUE_FOR_CO2
−
|
+
|Connects/disconnects CO2 limitation on plant growth
−
|
+
|0/1
−
|
+
|Inactive/Active
−
|
+
|1
−
|
+
| -
−
|
+
|Boolean
 
|-
 
|-
 
| Land
 
| Land
−
|RunoffProperties
+
|Vegetation
−
|
+
|ADJUST_RUE_FOR_VPD
−
|
+
|Connects/disconnects Vapour Pressure Deficit limitation plant growth
−
|
+
|0/1
−
|
+
|Inactive/Active
−
|
+
|1
−
|
+
| -
−
|
+
|Boolean
 
|-
 
|-
 
| Land
 
| Land
−
|RunoffProperties
+
|Vegetation
 +
|ATMOSPHERE_CO2
 +
|Atmosphere CO2 concentrations - should be atmosphere prop
 
|
 
|
 
|
 
|
−
|
+
|330
−
|
+
| ppm
−
|
+
|Real
−
|
 
−
|
 
−
|}
 
−
 
 
−
=== ModuleSnow ===
 
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleSnow.F90 Source Code]
 
−
 
 
−
{| class="wikitable"
 
−
 
 
−
|-
 
−
! scope="col" |Project
 
−
! scope="col" |Module
 
−
! scope="col" |Keyword
 
−
! scope="col" |Keyword description
 
−
! scope="col" |Options
 
−
! scope="col" |Option description
 
−
! scope="col" |Default Value
 
−
! scope="col" |Units
 
−
! scope="col" |Type
 
−
 
 
 
|-
 
|-
 
| Land
 
| Land
−
|Snow
+
|Vegetation
−
|
+
|ATMOSPHERE_OUTPUT
−
|
+
|Output averaged atmosphere properties during dt
−
|
+
|0/1
−
|
+
|Inactive/Active
−
|
+
|0
−
|
+
| -
−
|
+
|Boolean
−
|-
 
−
| Land
 
−
|Snow
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|-
 
−
| Land
 
−
|Snow
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|}
 
−
 
 
−
=== ModuleVegetation ===
 
−
==== Vegetation.dat ====
 
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
−
 
 
−
{| class="wikitable"
 
−
 
 
−
|-
 
−
! scope="col" |Project
 
−
! scope="col" |Module
 
−
! scope="col" |Keyword
 
−
! scope="col" |Keyword description
 
−
! scope="col" |Options
 
−
! scope="col" |Option description
 
−
! scope="col" |Default Value
 
−
! scope="col" |Units
 
−
! scope="col" |Type
 
−
 
 
 
|-
 
|-
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|ADJUST_RUE_FOR_CO2
+
|CHANGE_CANOPY_HEIGHT
−
|Connects/disconnects CO2 limitation on plant growth
+
|Changes made to swat code because showed error with grazing
 
|0/1
 
|0/1
 
|Inactive/Active  
 
|Inactive/Active  
−
|1
+
|0
 
| -
 
| -
 
|Boolean
 
|Boolean
Line 5,853: Line 7,323:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|ADJUST_RUE_FOR_VPD
+
|CHANGE_LAI_SENESCENCE
−
|Connects/disconnects Vapour Pressure Deficit limitation plant growth
+
|Changes made to swat code because showed error with grazing
 
|0/1
 
|0/1
 
|Inactive/Active  
 
|Inactive/Active  
−
|1
+
|0
 
| -
 
| -
 
|Boolean
 
|Boolean
Line 5,863: Line 7,333:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|ATMOSPHERE_CO2
+
|DORMANCY
−
|Atmosphere CO2 concentrations - should be atmosphere prop
+
|Connects/disconnects dormancy
−
|
+
|0/1
−
|
+
|Inactive/Active  
−
|330
 
−
| ppm
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|ATMOSPHERE_OUTPUT
 
−
|Output averaged atmosphere properties during dt
 
−
|0/1
 
−
|Inactive/Active  
 
 
|0
 
|0
 
| -
 
| -
 
|Boolean
 
|Boolean
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Vegetation
+
| rowspan="2" |Vegetation
−
|CHANGE_CANOPY_HEIGHT
 
−
|Changes made to swat code because showed error with grazing
 
−
|0/1
 
−
|Inactive/Active
 
−
|0
 
−
| -
 
−
|Boolean
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|CHANGE_LAI_SENESCENCE
 
−
|Changes made to swat code because showed error with grazing
 
−
|0/1
 
−
|Inactive/Active
 
−
|0
 
−
| -
 
−
|Boolean
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|DORMANCY
 
−
|Connects/disconnects dormancy
 
−
|0/1
 
−
|Inactive/Active
 
−
|0
 
−
| -
 
−
|Boolean
 
−
|-
 
−
| Land
 
−
|Vegetation
 
 
| rowspan="2" |EVOLUTION
 
| rowspan="2" |EVOLUTION
 
| rowspan="2" |Global properties evolution
 
| rowspan="2" |Global properties evolution
Line 5,918: Line 7,348:
 
|Read from file
 
|Read from file
 
| rowspan="2" | -
 
| rowspan="2" | -
−
|
+
| rowspan="2" |
−
|Integer
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|Vegetation growth model
 
|Vegetation growth model
−
|
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
Line 6,018: Line 7,444:
 
|Boolean
 
|Boolean
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Vegetation
+
| rowspan="2" |Vegetation
 
| rowspan="2" |MODEL_EVOLUTION
 
| rowspan="2" |MODEL_EVOLUTION
 
| rowspan="2" |Global properties evolution
 
| rowspan="2" |Global properties evolution
 
|1
 
|1
 
|Vegetation growth will NOT be modeled
 
|Vegetation growth will NOT be modeled
−
|rowspan="2" | -
+
| rowspan="2" | -
−
|
+
| rowspan="2" |
−
|Integer
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|SWAT method will be used to model vegetation growth
 
|SWAT method will be used to model vegetation growth
−
|
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
Line 6,065: Line 7,487:
 
|Boolean
 
|Boolean
 
|-
 
|-
−
| Land
+
| rowspan="3" |Land
−
|Vegetation
+
| rowspan="3" |Vegetation
 
| rowspan="3" |NUTRIENT_UPTAKE_METHOD
 
| rowspan="3" |NUTRIENT_UPTAKE_METHOD
 
| rowspan="3" | -
 
| rowspan="3" | -
 
|1
 
|1
 
|uptake is: concentration * water uptake
 
|uptake is: concentration * water uptake
−
|rowspan="3" |2
+
| rowspan="3" |2
−
|
+
| rowspan="3" |
−
|Integer
+
| rowspan="3" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|SWAT based (independent of water uptake)
 
|SWAT based (independent of water uptake)
−
|
 
−
|Integer
 
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|3
 
|3
 
|NO nutrient uptake
 
|NO nutrient uptake
−
|
 
−
|Integer
 
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Vegetation
+
| rowspan="2" |Vegetation
 
| rowspan="2" |NUTRIENT_STRESS_METHOD
 
| rowspan="2" |NUTRIENT_STRESS_METHOD
 
| rowspan="2" | -
 
| rowspan="2" | -
 
|1
 
|1
 
|Effective/optimal
 
|Effective/optimal
−
|rowspan="2" |2
+
| rowspan="2" |2
−
|
+
| rowspan="2" |
−
|Integer
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|SWAT based
 
|SWAT based
−
|
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
Line 6,156: Line 7,566:
 
|Boolean
 
|Boolean
 
|-
 
|-
−
| Land
+
| rowspan="3" |Land
−
|Vegetation
+
| rowspan="3" |Vegetation
 
| rowspan="3" |ROOT_PROFILE
 
| rowspan="3" |ROOT_PROFILE
 
| rowspan="3" |if WATER_UPTAKE_METHOD = 1
 
| rowspan="3" |if WATER_UPTAKE_METHOD = 1
 
|1
 
|1
 
|Triangular
 
|Triangular
−
|rowspan="3" |1
+
| rowspan="3" |1
−
|
+
| rowspan="3" |
−
|Integer
+
| rowspan="3" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|Constant
 
|Constant
−
||
 
−
|Integer
 
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|3
 
|3
 
|Exponential(SWAT-like)
 
|Exponential(SWAT-like)
−
||
 
−
|Integer
 
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Vegetation
+
| rowspan="2" |Vegetation
 
| rowspan="2" |SALINITY_STRESS_METHOD
 
| rowspan="2" |SALINITY_STRESS_METHOD
 
| rowspan="2" |if WATER_UPTAKE_METHOD = 1
 
| rowspan="2" |if WATER_UPTAKE_METHOD = 1
 
|1
 
|1
 
|Threshold/Slope
 
|Threshold/Slope
−
|rowspan="2" |1
+
| rowspan="2" |1
−
|
+
| rowspan="2" |
−
|Integer
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|VanGenuchten(not implemented yet)
 
|VanGenuchten(not implemented yet)
−
|
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
Line 6,247: Line 7,645:
 
|real
 
|real
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Vegetation
+
| rowspan="2" |Vegetation
 
| rowspan="2" |WATER_UPTAKE_METHOD
 
| rowspan="2" |WATER_UPTAKE_METHOD
 
| rowspan="2" | -
 
| rowspan="2" | -
 
|1
 
|1
 
|according to root profile
 
|according to root profile
−
|rowspan="2" |1
+
| rowspan="2" |1
−
|
+
| rowspan="2" |
−
|Integer
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|SWAT based (exponential and thresholds)
 
|SWAT based (exponential and thresholds)
−
||
 
−
|Integer
 
 
|-
 
|-
−
| Land
+
| rowspan="2" |Land
−
|Vegetation
+
| rowspan="2" |Vegetation
 
| rowspan="2" |WATER_UPTAKE_STRESS_METHOD
 
| rowspan="2" |WATER_UPTAKE_STRESS_METHOD
 
| rowspan="2" |if WATER_UPTAKE_METHOD = 1
 
| rowspan="2" |if WATER_UPTAKE_METHOD = 1
 
|1
 
|1
 
|Feddes
 
|Feddes
−
|rowspan="2" |1
+
| rowspan="2" |1
−
|
+
| rowspan="2" |
−
|Integer
+
| rowspan="2" |Integer
 
|-
 
|-
−
| Land
 
−
|Vegetation
 
 
|2
 
|2
 
|VanGenuchten
 
|VanGenuchten
−
|
 
−
|Integer
 
 
|-
 
|-
 
| Land
 
| Land
Line 6,294: Line 7,684:
 
==== Vegetation Parameters File ====
 
==== Vegetation Parameters File ====
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 6,307: Line 7,695:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
−
 
 
|-  
 
|-  
 
| Land
 
| Land
Line 6,321: Line 7,708:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|NAME
+
|FILENAME
 
|
 
|
 
|
 
|
Line 6,331: Line 7,718:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|VEGETATION_ID
+
|GRAZING_BIOMASS
−
|crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database)
+
|grazed biomass
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|  
+
|kh/ha.day
−
|Integer
+
|Real
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|PLANTING_JULIANDAY
+
|GRAZING_DAYS
−
|Julian day when planting will occur
+
|Days of grazing (continuous)
 
|
 
|
 
|
 
|
Line 6,351: Line 7,738:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|PLANTING_HUBASE
+
|GRAZING_FRACTION_TO_MANURE
−
|Percentage of POTENTIAL YEARLY HU when planting will occur
+
|fraction of grazed biomass that goes to manure in same cell and day (0-1)
 
|
 
|
 
|
 
|
Line 6,361: Line 7,748:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|MATURITY_HU
+
|GRAZING_MANURE_NFRACTION
−
|Total PLANT ACCUMULATED HU when reaching maturity
+
|fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio)
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Integer
+
|Real
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|FILENAME
+
|GRAZING_MANURE_NUREAFRACTION
−
|
+
|fraction of manure N that is Urea (0-1). The remainder will be organic N
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|String
+
|Real
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|HARVESTKILL_JULIANDAY
+
|GRAZING_START_JULIANDAY
−
|julian day when harvestkill operation occur
+
|julian day when grazing will occur
 
|
 
|
 
|
 
|
Line 6,391: Line 7,778:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|HARVESTKILL_PLANTHU
+
|GRAZING_START_PLANTHU
−
|Percentage of PLANT ACCUMULATED HU when harvestkill operation occur
+
|Percentage of POTENTIAL YEARLY HU when grazing will occur
 
|
 
|
 
|
 
|
Line 6,398: Line 7,785:
 
|  
 
|  
 
|Real
 
|Real
 +
|-
 +
| Land
 +
|Vegetation
 +
|HARVEST_EFFICIENCY
 +
|Efficiency for harvest operation (residue if lower than 1)
 +
|
 +
|
 +
|
 +
|
 +
|Real
 
|-  
 
|-  
 
| Land
 
| Land
Line 6,421: Line 7,818:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|HARVEST_EFFICIENCY
+
|HARVESTKILL_JULIANDAY
−
|Efficiency for harvest operation (residue if lower than 1)
+
|julian day when harvestkill operation occur
 +
|
 +
|
 +
|
 +
|
 +
|Integer
 +
|-
 +
| Land
 +
|Vegetation
 +
|HARVESTKILL_PLANTHU
 +
|Percentage of PLANT ACCUMULATED HU when harvestkill operation occur
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Real  
+
|Real
 
|-  
 
|-  
 
| Land
 
| Land
Line 6,451: Line 7,858:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|GRAZING_START_JULIANDAY
+
|MATURITY_HU
−
|julian day when grazing will occur
+
|Total PLANT ACCUMULATED HU when reaching maturity
−
|
 
−
|
 
−
|
 
−
|
 
−
|Integer
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|GRAZING_START_PLANTHU
 
−
|Percentage of POTENTIAL YEARLY HU when grazing will occur
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|GRAZING_DAYS
 
−
|Days of grazing (continuous)
 
 
|
 
|
 
|
 
|
Line 6,491: Line 7,878:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|GRAZING_BIOMASS
+
|NAME
−
|grazed biomass
+
|
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|kh/ha.day
+
|  
−
|Real
+
|String
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|GRAZING_FRACTION_TO_MANURE
+
|PLANTING_HUBASE
−
|fraction of grazed biomass that goes to manure in same cell and day (0-1)
+
|Percentage of POTENTIAL YEARLY HU when planting will occur
 
|
 
|
 
|
 
|
Line 6,511: Line 7,898:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|GRAZING_MANURE_NFRACTION
+
|PLANTING_JULIANDAY
−
|fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio)
+
|Julian day when planting will occur
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|Integer
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|GRAZING_MANURE_NUREAFRACTION
+
|TRAMPLING_BIOMASS
−
|fraction of manure N that is Urea (0-1). The remainder will be organic N
+
|biomass not eaten but removed from plant and moved to soil, related to grazing efficiency
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|  
+
|kg/ha.day
 
|Real
 
|Real
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|TRAMPLING_BIOMASS
+
|VEGETATION_ID
−
|biomass not eaten but removed from plant and moved to soil, related to grazing efficiency
+
|crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database)
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|kg/ha.day
+
|  
−
|Real
+
|Integer
 
|}
 
|}
  
 
==== Fertilization Parameters File ====
 
==== Fertilization Parameters File ====
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 6,555: Line 7,940:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
 +
|-
 +
| rowspan="2" | Land
 +
| rowspan="2" |Vegetation
 +
| rowspan="2" |EXPLICIT_PHOSPHORUS
 +
| rowspan="2" |
 +
|1
 +
|Explicit add phosphorus if needed
 +
| rowspan="2" | -
 +
| rowspan="2" |
 +
| rowspan="2" |Boolean
 +
|-
 +
|0
 +
|Add phosphorus if nitrogen needed (SWAT method)
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_ID
+
|FERTILIZER_APPLICATION_HU
−
|Fertilizer used in autofertilization (see fertilizer database)
+
|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Integer
+
|Real
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|NITROGEN_TRESHOLD
+
|FERTILIZER_APPLICATION_JDAY
−
|Percentage of stress below which autofertilization starts (0-1)
+
|julian day when pesticide application will occur
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|Integer
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|NITROGEN_APPLICATION_MAX
+
|FERTILIZER_APPLICATION_KG_HA
−
|Maximum amount of fertilizer in one application
+
|Amount of fertilizer applied
 
|
 
|
 
|
 
|
Line 6,588: Line 7,986:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|NITROGEN_ANNUAL_MAX
+
|FERTILIZER_CONT_DAYS
−
|Maximum amount of fertilizer in one year
+
|how many days of continuous application (read if FERTILIZER_CONT_ON : 1)
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|kg/ha
+
|  
−
|Real
+
|Integer
 
|-
 
|-
−
| rowspan="2" | Land
+
| rowspan="2" |Land
 
| rowspan="2" |Vegetation
 
| rowspan="2" |Vegetation
−
| rowspan="2" |EXPLICIT_PHOSPHORUS
+
| rowspan="2" |FERTILIZER_CONT_ON
 
| rowspan="2" |
 
| rowspan="2" |
 
|1
 
|1
−
|Explicit add phosphorus if needed
+
|If this is a continuous fertilizer application
 
| rowspan="2" | -
 
| rowspan="2" | -
 
| rowspan="2" |
 
| rowspan="2" |
Line 6,607: Line 8,005:
 
|-
 
|-
 
|0
 
|0
−
|Add phosphorus if nitrogen needed (SWAT method)
+
|or absent if not
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|PHOSPHORUS_TRESHOLD
+
|FERTILIZER_ID
−
|only read if EXPLICIT_PHOSPHORUS : 1
+
|Fertilizer used in autofertilization (see fertilizer database)
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|Integer
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|PHOSPHORUS_APPLICATION_MAX
 
−
|only read if EXPLICIT_PHOSPHORUS : 1
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|Real
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|PHOSPHORUS_ANNUAL_MAX
 
−
|only read if EXPLICIT_PHOSPHORUS : 1
 
−
|
 
−
|
 
−
|
 
−
|
 
−
|Real
 
 
|-
 
|-
 
| rowspan="2" |Land
 
| rowspan="2" |Land
Line 6,654: Line 8,032:
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_APPLICATION_JDAY
+
|NITROGEN_ANNUAL_MAX
−
|julian day when pesticide application will occur
+
|Maximum amount of fertilizer in one year
 
|
 
|
 
|
 
|
 
|  
 
|  
 +
|kg/ha
 +
|Real
 +
|-
 +
| Land
 +
|Vegetation
 +
|NITROGEN_APPLICATION_MAX
 +
|Maximum amount of fertilizer in one application
 +
|
 +
|
 
|  
 
|  
−
|Integer
+
|kg/ha
 +
|Real
 
|-  
 
|-  
 
| Land
 
| Land
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_APPLICATION_HU
+
|NITROGEN_TRESHOLD
−
|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
+
|Percentage of stress below which autofertilization starts (0-1)
 
|
 
|
 
|
 
|
Line 6,671: Line 8,059:
 
|  
 
|  
 
|Real
 
|Real
−
|-
+
|-  
−
| rowspan="2" |Land
+
|Land
−
| rowspan="2" |Vegetation
 
−
| rowspan="2" |FERTILIZER_CONT_ON S
 
−
| rowspan="2" |
 
−
|1
 
−
|If this is a continuous fertilizer application
 
−
| rowspan="2" | -
 
−
| rowspan="2" |
 
−
| rowspan="2" |Boolean
 
−
|-
 
−
|0
 
−
|or absent if not
 
−
|-  
 
−
| Land
 
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_CONT_DAYS
+
|PESTICIDE_APPLICATION_HU
−
|how many days of continuous application (read if FERTILIZER_CONT_ON : 1)
+
|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Integer
 
−
|-
 
−
| Land
 
−
|Vegetation
 
−
|FERTILIZER_APPLICATION_KG_HA
 
−
|Amount of fertilizer applied
 
−
|
 
−
|
 
−
|
 
−
|kg/ha
 
 
|Real
 
|Real
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_ID
+
|PESTICIDE_APPLICATION_JDAY
−
|Pesticide used in this application (see pesticide database)
+
|julian day when pesticide application will occur
 
|
 
|
 
|
 
|
Line 6,717: Line 8,082:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_APPLICATION_JDAY
+
|PESTICIDE_APPLICATION_KG_HA
−
|julian day when pesticide application will occur
+
|Amount of pesticide applied
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|  
+
|kg/ha
−
|Integer
+
|Real
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_APPLICATION_HU
+
|PESTICIDE_ID
−
|Percentage of POTENTIAL YEARLY HU when pesticide application will occur
+
|Pesticide used in this application (see pesticide database)
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|Integer
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_APPLICATION_KG_HA
+
|PESTICIDE_CONT_DAYS
−
|Amount of pesticide applied
+
|how many days of continuous application (read if PESTICIDE_CONT_ON : 1)
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|kg/ha
+
|  
−
|Real
+
|Integer
 
|-
 
|-
 
| rowspan="2" |Land
 
| rowspan="2" |Land
Line 6,758: Line 8,123:
 
|or absent if not
 
|or absent if not
 
|-  
 
|-  
−
|Land
+
| Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_CONT_DAYS
+
|PHOSPHORUS_ANNUAL_MAX
−
|how many days of continuous application (read if PESTICIDE_CONT_ON : 1)
+
|only read if EXPLICIT_PHOSPHORUS : 1
 
|
 
|
 
|
 
|
 
|  
 
|  
 
|  
 
|  
−
|Integer
+
|Real
−
|}
+
|-
−
 
+
| Land
−
==== Growth Database File ====
+
|Vegetation
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
+
|PHOSPHORUS_APPLICATION_MAX
−
 
+
|only read if EXPLICIT_PHOSPHORUS : 1
 +
|
 +
|
 +
|
 +
|
 +
|Real
 +
|-
 +
| Land
 +
|Vegetation
 +
|PHOSPHORUS_TRESHOLD
 +
|only read if EXPLICIT_PHOSPHORUS : 1
 +
|
 +
|
 +
|
 +
|
 +
|Real
 +
|}
 +
 
 +
==== Growth Database File ====
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 6,787: Line 8,170:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PLANT_TYPE
+
|BASE_TEMPERATURE
 
|
 
|
 
|
 
|
Line 6,793: Line 8,176:
 
|  
 
|  
 
|  
 
|  
−
|Integer
+
|Real
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_NITROGENFRACTION_N1
+
|BIOMASS_ENERGY_RATIO
 
|
 
|
 
|
 
|
Line 6,807: Line 8,190:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_NITROGENFRACTION_N2
+
|BIOMASS_ENERGY_RATIO_HIGH
 
|
 
|
 
|
 
|
Line 6,817: Line 8,200:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_NITROGENFRACTION_N3
+
|BIOMASS_FRAC_REMOVED_DORMANCY
 
|
 
|
 
|
 
|
Line 6,827: Line 8,210:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_PHOSPHORUSFRACTION_P1
+
|CANOPY_HEIGHT_MAX
 
|
 
|
 
|
 
|
Line 6,837: Line 8,220:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_PHOSPHORUSFRACTION_P2
+
|CO2_HIGH
 
|
 
|
 
|
 
|
Line 6,847: Line 8,230:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_PHOSPHORUSFRACTION_P3
+
|GROWFRACTION_1
 
|
 
|
 
|
 
|
Line 6,857: Line 8,240:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|BASE_TEMPERATURE
+
|GROWFRACTION_2
 
|
 
|
 
|
 
|
Line 6,867: Line 8,250:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_TEMPERATURE
+
|GROWFRACTION_LAIDECLINE
 
|
 
|
 
|
 
|
Line 6,877: Line 8,260:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|RADIATION_EXTINCTION_COEF
+
|LAI_MAX
 
|
 
|
 
|
 
|
Line 6,887: Line 8,270:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|BIOMASS_ENERGY_RATIO
+
|LAI_MIN_DORMANCY
 
|
 
|
 
|
 
|
Line 6,897: Line 8,280:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|CO2_HIGH
+
|MINIMUM_HARVEST_INDEX
 
|
 
|
 
|
 
|
Line 6,907: Line 8,290:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|BIOMASS_ENERGY_RATIO_HIGH
+
|OPTIMAL_HARVEST_INDEX
 
|
 
|
 
|
 
|
Line 6,917: Line 8,300:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|RUE_DECLINE_RATE
+
|OPTIMAL_LAIMAXFRACTION_1
 
|
 
|
 
|
 
|
Line 6,927: Line 8,310:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|LAI_MAX
+
|OPTIMAL_LAIMAXFRACTION_2
 
|
 
|
 
|
 
|
Line 6,937: Line 8,320:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_LAIMAXFRACTION_1
+
|OPTIMAL_NITROGENFRACTION_N1
 
|
 
|
 
|
 
|
Line 6,947: Line 8,330:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_LAIMAXFRACTION_2
+
|OPTIMAL_NITROGENFRACTION_N2
 
|
 
|
 
|
 
|
Line 6,957: Line 8,340:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|GROWFRACTION_1
+
|OPTIMAL_NITROGENFRACTION_N3
 
|
 
|
 
|
 
|
Line 6,967: Line 8,350:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|GROWFRACTION_2
+
|OPTIMAL_PHOSPHORUSFRACTION_P1
 
|
 
|
 
|
 
|
Line 6,977: Line 8,360:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|GROWFRACTION_LAIDECLINE
+
|OPTIMAL_PHOSPHORUSFRACTION_P2
 
|
 
|
 
|
 
|
Line 6,987: Line 8,370:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|ROOT_DEPTH_MAX
+
|OPTIMAL_PHOSPHORUSFRACTION_P3
 
|
 
|
 
|
 
|
Line 6,997: Line 8,380:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|CANOPY_HEIGHT_MAX
+
|OPTIMAL_TEMPERATURE
 
|
 
|
 
|
 
|
Line 7,007: Line 8,390:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|OPTIMAL_HARVEST_INDEX
+
|PLANT_TYPE
 
|
 
|
 
|
 
|
Line 7,013: Line 8,396:
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|Integer
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|MINIMUM_HARVEST_INDEX
+
|RADIATION_EXTINCTION_COEF
 
|
 
|
 
|
 
|
Line 7,027: Line 8,410:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|YELD_NITROGENFRACTION
+
|ROOT_DEPTH_MAX
 
|
 
|
 
|
 
|
Line 7,037: Line 8,420:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|YELD_PHOSPHORUSFRACTION
+
|RUE_DECLINE_RATE
 
|
 
|
 
|
 
|
Line 7,047: Line 8,430:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|TREE_YEARSTOMATURITY
+
|TREE_MAXIMUMBIOMASS
 
|
 
|
 
|
 
|
Line 7,053: Line 8,436:
 
|  
 
|  
 
|  
 
|  
−
|Integer
+
|Real
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|TREE_MAXIMUMBIOMASS
+
|TREE_YEARSTOMATURITY
 
|
 
|
 
|
 
|
Line 7,063: Line 8,446:
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|Integer
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|BIOMASS_FRAC_REMOVED_DORMANCY
+
|YELD_NITROGENFRACTION
 
|
 
|
 
|
 
|
Line 7,077: Line 8,460:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|LAI_MIN_DORMANCY
+
|YELD_PHOSPHORUSFRACTION
 
|
 
|
 
|
 
|
Line 7,088: Line 8,471:
 
==== Pesticide Database File ====
 
==== Pesticide Database File ====
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 7,104: Line 8,485:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_ID
+
|PESTICIDE_APPLICATION_JDAY
−
|
+
|julian day when pesticide application will occur
 
|
 
|
 
|
 
|
Line 7,114: Line 8,495:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_NAME
+
|PESTICIDE_APPLICATION_KG_HA
−
|
+
|Amount of pesticide applied
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|  
+
|kg/ha
−
|String
+
|Real
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_APPLICATION_JDAY
+
|PESTICIDE_ID
−
|julian day when pesticide application will occur
+
|
 
|
 
|
 
|
 
|
Line 7,134: Line 8,515:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|PESTICIDE_APPLICATION_KG_HA
+
|PESTICIDE_NAME
−
|Amount of pesticide applied
+
|
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|kg/ha
+
|  
−
|Real
+
|String
 
|}
 
|}
  
 
==== Fertilizer Database File ====
 
==== Fertilizer Database File ====
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 7,161: Line 8,540:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_ID
+
|AMMONIA_FRACTION_IN_MINERAL_N
 
|
 
|
 
|
 
|
Line 7,167: Line 8,546:
 
|  
 
|  
 
|  
 
|  
−
|Integer
+
|Real
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_NAME
+
|FERTILIZER_ID
 
|
 
|
 
|
 
|
Line 7,177: Line 8,556:
 
|  
 
|  
 
|  
 
|  
−
|String
+
|Integer
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|MINERAL_N_FRACTION_IN_FERTILIZER
+
|FERTILIZER_FRACTION_IN_SURFACE
 
|
 
|
 
|
 
|
Line 7,191: Line 8,570:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|ORGANIC_N_FRACTION_IN_FERTILIZER
+
|FERTILIZER_NAME
 
|
 
|
 
|
 
|
Line 7,197: Line 8,576:
 
|  
 
|  
 
|  
 
|  
−
|Real
+
|String
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|AMMONIA_FRACTION_IN_MINERAL_N
+
|MINERAL_N_FRACTION_IN_FERTILIZER
 
|
 
|
 
|
 
|
Line 7,221: Line 8,600:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|ORGANIC_P_FRACTION_IN_FERTILIZER
+
|ORGANIC_N_FRACTION_IN_FERTILIZER
 
|
 
|
 
|
 
|
Line 7,231: Line 8,610:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|FERTILIZER_FRACTION_IN_SURFACE
+
|ORGANIC_P_FRACTION_IN_FERTILIZER
 
|
 
|
 
|
 
|
Line 7,242: Line 8,621:
 
==== Feddes Database File ====
 
==== Feddes Database File ====
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code]
−
 
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 7,258: Line 8,635:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|VEGETATION_ID
+
|FEDDES_H1
−
|
+
|higher head for transpiration (saturation and oxygen loss)
 
|
 
|
 
|
 
|
 
|  
 
|  
−
|
+
|m
−
|Integer
+
|Real
−
|-
 
−
|rowspan="3" |Land
 
−
|rowspan="3" |Vegetation
 
−
|rowspan="3" |FEDDES_TYPE
 
−
|rowspan="3" |
 
−
|1
 
−
|Normal
 
−
|rowspan="3" | 1
 
−
|rowspan="3" | -
 
−
|rowspan="3" |Integer
 
−
|-
 
−
|2
 
−
|With points
 
−
|-
 
−
|3
 
−
|Variable consoant the transpiration
 
−
|-
 
−
|Land
 
−
|Vegetation
 
−
|FEDDES_H1
 
−
|higher head for transpiration (saturation and oxygen loss)
 
−
|
 
−
|
 
−
|
 
−
|m
 
−
|Real
 
 
|-  
 
|-  
 
|Land
 
|Land
Line 7,362: Line 8,713:
 
|Real
 
|Real
 
|-  
 
|-  
−
|rowspan="2" |Land
+
|rowspan="3" |Land
−
|rowspan="2" |Vegetation
+
|rowspan="3" |Vegetation
−
|rowspan="2" |USE_SALINITY
+
|rowspan="3" |FEDDES_TYPE
−
|rowspan="2" |
+
|rowspan="3" |
 
|1
 
|1
−
|Yes
+
|Normal
−
|rowspan="2" | 0
+
|rowspan="3" | 1
−
|rowspan="2" | -  
+
|rowspan="3" | -
−
|rowspan="2" |Boolean
+
|rowspan="3" |Integer
−
|-
+
|-
−
|0
+
|2
−
|No
+
|With points
 +
|-  
 +
|3
 +
|Variable consoant the transpiration
 
|-  
 
|-  
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|SALINITY_STRESS_THRESHOLD
+
|SALINITY_STRESS_SLOPE
 
|
 
|
 
|
 
|
Line 7,387: Line 8,741:
 
|Land
 
|Land
 
|Vegetation
 
|Vegetation
−
|SALINITY_STRESS_SLOPE
+
|SALINITY_STRESS_THRESHOLD
 
|
 
|
 
|
 
|
Line 7,410: Line 8,764:
 
|3  
 
|3  
 
|Min of all
 
|Min of all
 +
|-
 
|-  
 
|-  
−
|}
+
|rowspan="2" |Land
−
 
+
|rowspan="2" |Vegetation
−
==MOHID Water==
+
|rowspan="2" |USE_SALINITY
−
=== Module Assimilation===
+
|rowspan="2" |
−
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleAssimilation.F90 Source Code]
+
|1
−
{| class="wikitable"
+
|Yes
−
 
+
|rowspan="2" | 0
−
|-
+
|rowspan="2" | -
 +
|rowspan="2" |Boolean
 +
|-
 +
|0
 +
|No
 +
|-
 +
|Land
 +
|Vegetation
 +
|VEGETATION_ID
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|Integer
 +
|}
 +
 
 +
==MOHID Water==
 +
 
 +
=== Module Assimilation===
 +
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleAssimilation.F90 Source Code]
 +
{| class="wikitable"
 +
|-
 
! scope="col" |Project
 
! scope="col" |Project
 
! scope="col" |Module
 
! scope="col" |Module
Line 7,425: Line 8,802:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
−
 
+
! scope="col" |Default Value
−
 
+
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 7,432: Line 8,810:
 
|COLD_RELAX_PERIOD
 
|COLD_RELAX_PERIOD
 
|Period of time along which relaxation has a linear increase
 
|Period of time along which relaxation has a linear increase
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,439: Line 8,820:
 
|DESCRIPTION
 
|DESCRIPTION
 
|Short description about the assimilation property
 
|Short description about the assimilation property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Assimilation
+
| rowspan="2" |Assimilation
 
| rowspan="2" |DIMENSION
 
| rowspan="2" |DIMENSION
 
| rowspan="2" |Number of dimensions of the assimilation field
 
| rowspan="2" |Number of dimensions of the assimilation field
 
|2
 
|2
 
|Two-Dimensional property
 
|Two-Dimensional property
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Assimilation
 
 
|3
 
|3
 
|Three-Dimensional property
 
|Three-Dimensional property
Line 7,458: Line 8,843:
 
|NAME
 
|NAME
 
|Name of the assimilation property
 
|Name of the assimilation property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,465: Line 8,853:
 
|OUTPUT_HDF
 
|OUTPUT_HDF
 
|Output HDF results for assimilation property
 
|Output HDF results for assimilation property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,472: Line 8,863:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,479: Line 8,873:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Output time series for assimilation property
 
|Output time series for assimilation property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,486: Line 8,883:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to time serie locations file
 
|Path to time serie locations file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Assimilation
+
| rowspan="3" |Assimilation
 
| rowspan="3" |TYPE_ZUV
 
| rowspan="3" |TYPE_ZUV
 
| rowspan="3" |Reference of the field to the grid.
 
| rowspan="3" |Reference of the field to the grid.
 
|U
 
|U
 
|Variable is referenced to the XX faces of the control volume
 
|Variable is referenced to the XX faces of the control volume
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Assimilation
 
 
|V
 
|V
 
|Variable is referenced to the YY faces of the control volume
 
|Variable is referenced to the YY faces of the control volume
 
|-
 
|-
−
| Water
 
−
|Assimilation
 
 
|Z
 
|Z
 
|Variable is defined in the center of the control volume
 
|Variable is defined in the center of the control volume
Line 7,510: Line 8,909:
 
|UNITS
 
|UNITS
 
|Assimilation property units
 
|Assimilation property units
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,516: Line 8,918:
 
|Assimilation
 
|Assimilation
 
|VGROUP_PATH
 
|VGROUP_PATH
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,524: Line 8,929:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleConsolidation.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleConsolidation.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 7,532: Line 8,936:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 7,537: Line 8,944:
 
|BOXFLUXES
 
|BOXFLUXES
 
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
 
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,544: Line 8,954:
 
|COMPUTE_SHEAR_STRESS
 
|COMPUTE_SHEAR_STRESS
 
|Compute shear stress or read from file
 
|Compute shear stress or read from file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,551: Line 8,964:
 
|CONSOLIDATION
 
|CONSOLIDATION
 
|Specifies if consolidation is to be computed
 
|Specifies if consolidation is to be computed
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,558: Line 8,974:
 
|CONSOLIDATION_DT
 
|CONSOLIDATION_DT
 
|Time step for consolidation
 
|Time step for consolidation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,565: Line 8,984:
 
|CONTINUOUS
 
|CONTINUOUS
 
|Speficies if initialization is based in previous run
 
|Speficies if initialization is based in previous run
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,572: Line 8,994:
 
|CSE_COEF
 
|CSE_COEF
 
|Coeficient to compute exponential increase of critical shear stress for erosion with depth
 
|Coeficient to compute exponential increase of critical shear stress for erosion with depth
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,579: Line 9,004:
 
|DECAYMENT
 
|DECAYMENT
 
|Computes porosity decayment (compaction) inside the sediment compartment
 
|Computes porosity decayment (compaction) inside the sediment compartment
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,586: Line 9,014:
 
|DECAYTIME
 
|DECAYTIME
 
|Decay factor for consolidation
 
|Decay factor for consolidation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,593: Line 9,024:
 
|INFINITE_CSE
 
|INFINITE_CSE
 
|Maximum critical shear stress for erosion
 
|Maximum critical shear stress for erosion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,600: Line 9,034:
 
|MAX_THICKNESS
 
|MAX_THICKNESS
 
|Maximum layer thickness allowed for a sediment layer
 
|Maximum layer thickness allowed for a sediment layer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,607: Line 9,044:
 
|MIN_THICKNESS
 
|MIN_THICKNESS
 
|Minimum thickness allowed for a sediment layer
 
|Minimum thickness allowed for a sediment layer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,614: Line 9,054:
 
|OUTPUT_HDF
 
|OUTPUT_HDF
 
|Output HDF results
 
|Output HDF results
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,621: Line 9,064:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,628: Line 9,074:
 
|SURFACE_CSE
 
|SURFACE_CSE
 
|Critical shear stress for erosion for the top layer
 
|Critical shear stress for erosion for the top layer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,635: Line 9,084:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Output time series
 
|Output time series
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,642: Line 9,094:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to time serie locations file
 
|Path to time serie locations file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module FreeVerticalMovement===
 
=== Module FreeVerticalMovement===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleFreeVerticalMovement.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleFreeVerticalMovement.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 7,656: Line 9,111:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 7,661: Line 9,119:
 
|CHS
 
|CHS
 
|Hindered settling concentration threshold
 
|Hindered settling concentration threshold
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,668: Line 9,129:
 
|DEPOSITION
 
|DEPOSITION
 
|Compute deposition for particulate property
 
|Compute deposition for particulate property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|FreeVerticalMovement
+
| rowspan="2" |FreeVerticalMovement
 
| rowspan="2" |FREEVERT_IMPEXP_ADV
 
| rowspan="2" |FREEVERT_IMPEXP_ADV
 
| rowspan="2" |Coeficient to compute vertical movement through implicit or explicit methods
 
| rowspan="2" |Coeficient to compute vertical movement through implicit or explicit methods
 
|0.0
 
|0.0
 
|Implicit
 
|Implicit
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|FreeVerticalMovement
 
 
|1.0
 
|1.0
 
|Explicit
 
|Explicit
Line 7,687: Line 9,152:
 
|KL
 
|KL
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,694: Line 9,162:
 
|KL1
 
|KL1
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,701: Line 9,172:
 
|M
 
|M
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,708: Line 9,182:
 
|ML
 
|ML
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,715: Line 9,192:
 
|SALTINT
 
|SALTINT
 
|Definition of free vertical movement being function of salinity
 
|Definition of free vertical movement being function of salinity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,722: Line 9,202:
 
|SALTINTVALUE
 
|SALTINTVALUE
 
|Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
 
|Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|FreeVerticalMovement
+
| rowspan="2" |FreeVerticalMovement
 
| rowspan="2" |WS_TYPE
 
| rowspan="2" |WS_TYPE
 
| rowspan="2" |Method to compute settling velocity
 
| rowspan="2" |Method to compute settling velocity
 
|1
 
|1
 
|Prescribe a constant settling velocity for particulate property
 
|Prescribe a constant settling velocity for particulate property
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|FreeVerticalMovement
 
 
|2
 
|2
 
|Compute settling velocity as function of cohesive sediment concentration
 
|Compute settling velocity as function of cohesive sediment concentration
Line 7,739: Line 9,223:
 
| Water
 
| Water
 
|FreeVerticalMovement
 
|FreeVerticalMovement
−
|ws_value
+
|WS_VALUE
 +
|Prescribed constant settling velocity
 
|
 
|
 
|
 
|
 
|
 
|
−
|-
 
−
| Water
 
−
|FreeVerticalMovement
 
−
|WS_VALUE
 
−
|Prescribed constant settling velocity
 
 
|
 
|
 
|
 
|
Line 7,755: Line 9,235:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamic.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamic.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 7,763: Line 9,242:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 7,768: Line 9,250:
 
|ADV_METHOD_H
 
|ADV_METHOD_H
 
|Defines the horizontal numerical method of advection.
 
|Defines the horizontal numerical method of advection.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,774: Line 9,259:
 
|Hydrodynamic
 
|Hydrodynamic
 
|ADV_METHOD_V
 
|ADV_METHOD_V
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,782: Line 9,270:
 
|ATM_PRESSURE
 
|ATM_PRESSURE
 
|Checks if the user wants to consider the effect of the Atmospheric Pressure
 
|Checks if the user wants to consider the effect of the Atmospheric Pressure
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |ATM_PRESSURE_TYPE
 
| rowspan="3" |ATM_PRESSURE_TYPE
 
| rowspan="3" |Defines the atmospheric reference field
 
| rowspan="3" |Defines the atmospheric reference field
 
|0  
 
|0  
 
|no atmospheric reference field
 
|no atmospheric reference field
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1
 
|1
 
|use "atmospheric pressure" from Module Atmosphere
 
|use "atmospheric pressure" from Module Atmosphere
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
 
|use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
Line 7,806: Line 9,296:
 
|BAROCLINIC
 
|BAROCLINIC
 
|Checks if the user pretends to compute the baroclinic pressure
 
|Checks if the user pretends to compute the baroclinic pressure
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,812: Line 9,305:
 
|Hydrodynamic
 
|Hydrodynamic
 
|BAROCLINIC_METHOD
 
|BAROCLINIC_METHOD
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,819: Line 9,315:
 
|Hydrodynamic
 
|Hydrodynamic
 
|BAROCLINIC_OBC_DISCRET
 
|BAROCLINIC_OBC_DISCRET
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,826: Line 9,325:
 
|Hydrodynamic
 
|Hydrodynamic
 
|BAROCLINIC_POLIDEGREE
 
|BAROCLINIC_POLIDEGREE
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |BAROCLINIC_RADIATION
 
| rowspan="3" |BAROCLINIC_RADIATION
 
| rowspan="3" |Check if the user wants to radiate internal tides
 
| rowspan="3" |Check if the user wants to radiate internal tides
 
|0
 
|0
 
|No radiation
 
|No radiation
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1
 
|1
 
|Horizontal
 
|Horizontal
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|Vertical
 
|Vertical
Line 7,850: Line 9,351:
 
|Hydrodynamic
 
|Hydrodynamic
 
|BAROCLINIC_WAVE_DT
 
|BAROCLINIC_WAVE_DT
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,857: Line 9,361:
 
|Hydrodynamic
 
|Hydrodynamic
 
|begin_dragcoef
 
|begin_dragcoef
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,865: Line 9,372:
 
|BIHARMONIC
 
|BIHARMONIC
 
|Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation
 
|Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,872: Line 9,382:
 
|BIHARMONIC_COEF
 
|BIHARMONIC_COEF
 
|horizontal diffusion ocefficent used when the bi-harmonic option is on
 
|horizontal diffusion ocefficent used when the bi-harmonic option is on
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,879: Line 9,392:
 
|BOTTOMVISC_COEF
 
|BOTTOMVISC_COEF
 
|Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer  
 
|Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,886: Line 9,402:
 
|BOTTOMVISC_LIM
 
|BOTTOMVISC_LIM
 
|Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.
 
|Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,893: Line 9,412:
 
|BOTTOMWATERFLUX
 
|BOTTOMWATERFLUX
 
|Checks if the user want to consider the effect of the soil infiltration or consolidation
 
|Checks if the user want to consider the effect of the soil infiltration or consolidation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,900: Line 9,422:
 
|BOUNDARYBAROCLINIC
 
|BOUNDARYBAROCLINIC
 
|Check if the user wants to compute the baroclinic force in the boundary faces
 
|Check if the user wants to compute the baroclinic force in the boundary faces
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,907: Line 9,432:
 
|BOUNDARYFILE
 
|BOUNDARYFILE
 
|The file name of 3D file where the relaxation coefficient are.  
 
|The file name of 3D file where the relaxation coefficient are.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,914: Line 9,442:
 
|BOXFLUXES
 
|BOXFLUXES
 
|The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes
 
|The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,921: Line 9,452:
 
|BRCORIOLIS
 
|BRCORIOLIS
 
|Checks if the user wants to relax the coriolis force
 
|Checks if the user wants to relax the coriolis force
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,927: Line 9,461:
 
|Hydrodynamic
 
|Hydrodynamic
 
|BRFORCE
 
|BRFORCE
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,935: Line 9,472:
 
|BRROX
 
|BRROX
 
|Checks if the user wants to relax the baroclinic force
 
|Checks if the user wants to relax the baroclinic force
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,942: Line 9,482:
 
|BRTRANSPORT
 
|BRTRANSPORT
 
|Checks if the user wants to relax the horizontal momentum transport
 
|Checks if the user wants to relax the horizontal momentum transport
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,949: Line 9,492:
 
|BRVELOCITY
 
|BRVELOCITY
 
|Checks if the user wants to relax the horizontal velocity  
 
|Checks if the user wants to relax the horizontal velocity  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,956: Line 9,502:
 
|BRWATERLEVEL
 
|BRWATERLEVEL
 
|Checks if the user wants to relax the water level  
 
|Checks if the user wants to relax the water level  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,962: Line 9,511:
 
|Hydrodynamic
 
|Hydrodynamic
 
|CELERITY_TYPE
 
|CELERITY_TYPE
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,970: Line 9,522:
 
|CENTRIFUGAL
 
|CENTRIFUGAL
 
|Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
 
|Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,977: Line 9,532:
 
|CONSERVATIVE_HOR_DIF
 
|CONSERVATIVE_HOR_DIF
 
|Check if the user wants to compute the horizontal diffusion in a conservative way.
 
|Check if the user wants to compute the horizontal diffusion in a conservative way.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,984: Line 9,542:
 
|CONTINUOUS
 
|CONTINUOUS
 
|Checks if the user pretends to continue a old run
 
|Checks if the user pretends to continue a old run
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,991: Line 9,552:
 
|CORIOLIS
 
|CORIOLIS
 
|Checks  if the user pretends to compute the coriolis force effect
 
|Checks  if the user pretends to compute the coriolis force effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 7,998: Line 9,562:
 
|CORRECT_WATERLEVEL
 
|CORRECT_WATERLEVEL
 
|check if the user wants to corrected the water level when it is lower than a reference water level
 
|check if the user wants to corrected the water level when it is lower than a reference water level
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,007: Line 9,574:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|Boolean
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |CYCLIC_DIRECTION
 
| rowspan="3" |CYCLIC_DIRECTION
 
| rowspan="3" |Check along which direction the user wants to impose a CYCLIC boundary condition
 
| rowspan="3" |Check along which direction the user wants to impose a CYCLIC boundary condition
 
|DirectionX_
 
|DirectionX_
 
|Direction x
 
|Direction x
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|DirectionY_
 
|DirectionY_
 
|Direction Y
 
|Direction Y
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|DirectionXY_
 
|DirectionXY_
 
|Directions X and Y
 
|Directions X and Y
Line 8,031: Line 9,600:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|Boolean
 
|-
 
|-
 
| Water
 
| Water
Line 8,036: Line 9,608:
 
|DEADZONE
 
|DEADZONE
 
|Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
 
|Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,043: Line 9,618:
 
|DEADZONE_FILE
 
|DEADZONE_FILE
 
|Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.
 
|Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,049: Line 9,627:
 
|Hydrodynamic
 
|Hydrodynamic
 
|DECAY_IN
 
|DECAY_IN
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,056: Line 9,637:
 
|Hydrodynamic
 
|Hydrodynamic
 
|DECAY_OUT
 
|DECAY_OUT
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Hydrodynamic
+
| rowspan="2" |Hydrodynamic
 
| rowspan="2" |DISCRETIZATION
 
| rowspan="2" |DISCRETIZATION
 
| rowspan="2" |Check what type of implicit discretization in time is choose for the global equations
 
| rowspan="2" |Check what type of implicit discretization in time is choose for the global equations
 
|1
 
|1
 
|Abbott Scheme - 4 equations per iteration
 
|Abbott Scheme - 4 equations per iteration
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|Leendertse Scheme - 6 equations per iteration
 
|Leendertse Scheme - 6 equations per iteration
Line 8,075: Line 9,660:
 
|Hydrodynamic
 
|Hydrodynamic
 
|DT_OUTPUT_TIME
 
|DT_OUTPUT_TIME
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,083: Line 9,671:
 
|ENERGY
 
|ENERGY
 
|Check if the user want to compute the potential and kinetic energy of the entire domain
 
|Check if the user want to compute the potential and kinetic energy of the entire domain
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,089: Line 9,680:
 
|Hydrodynamic
 
|Hydrodynamic
 
|ENERGY_DT
 
|ENERGY_DT
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,096: Line 9,690:
 
|Hydrodynamic
 
|Hydrodynamic
 
|ENERGY_WINDOW
 
|ENERGY_WINDOW
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,104: Line 9,701:
 
|ENTERING_WAVE
 
|ENTERING_WAVE
 
|Checks if the wave imposed in the boundary is entering in the domain or leaving it
 
|Checks if the wave imposed in the boundary is entering in the domain or leaving it
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="5" |Water
−
|Hydrodynamic
+
| rowspan="5" |Hydrodynamic
 
| rowspan="5" |EVOLUTION
 
| rowspan="5" |EVOLUTION
 
| rowspan="5" |Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 
| rowspan="5" |Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 
|No_hydrodynamic
 
|No_hydrodynamic
 
|No hydrodynamic
 
|No hydrodynamic
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|Read_File
 
|Read_File
 
|Read File
 
|Read File
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|Residual_hydrodynamic
 
|Residual_hydrodynamic
 
|Residual hydrodynamic
 
|Residual hydrodynamic
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|Solve_Equations
 
|Solve_Equations
 
|Solve equations
 
|Solve equations
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|Vertical1D
 
|Vertical1D
 
|1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
 
|1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
Line 8,138: Line 9,733:
 
|HMIN_ADVECTION
 
|HMIN_ADVECTION
 
|The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
 
|The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,145: Line 9,743:
 
|HMIN_CHEZY
 
|HMIN_CHEZY
 
|Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
 
|Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,151: Line 9,752:
 
|Hydrodynamic
 
|Hydrodynamic
 
|HMIN_CONVECTION
 
|HMIN_CONVECTION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,159: Line 9,763:
 
|HORIZONTALADVECTION
 
|HORIZONTALADVECTION
 
|Checks  if the user pretends to compute the horizontal advection effect
 
|Checks  if the user pretends to compute the horizontal advection effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,165: Line 9,772:
 
|Hydrodynamic
 
|Hydrodynamic
 
|HORIZONTALCONVECTION
 
|HORIZONTALCONVECTION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,173: Line 9,783:
 
|HORIZONTALDIFFUSION
 
|HORIZONTALDIFFUSION
 
|Checks  if the user pretends to compute the horizontal diffusion effect
 
|Checks  if the user pretends to compute the horizontal diffusion effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,180: Line 9,793:
 
|IMPLICIT_HORADVECTION
 
|IMPLICIT_HORADVECTION
 
|Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly
 
|Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,186: Line 9,802:
 
|Hydrodynamic
 
|Hydrodynamic
 
|IMPLICIT_HORCONVECTION
 
|IMPLICIT_HORCONVECTION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |IMPLICIT_VERTADVECTION
 
| rowspan="3" |IMPLICIT_VERTADVECTION
 
| rowspan="3" |Check if the vertical advection is implicit
 
| rowspan="3" |Check if the vertical advection is implicit
 
|0.0
 
|0.0
 
|Explicit
 
|Explicit
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|0.5
 
|0.5
 
|Hybrid for option in (0.0, 1.0)
 
|Hybrid for option in (0.0, 1.0)
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1.0
 
|1.0
 
|Implicit
 
|Implicit
Line 8,210: Line 9,828:
 
|Hydrodynamic
 
|Hydrodynamic
 
|IMPLICIT_VERTCONVECTION
 
|IMPLICIT_VERTCONVECTION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |IMPLICIT_VERTDIFFUSION
 
| rowspan="3" |IMPLICIT_VERTDIFFUSION
 
| rowspan="3" |Check if the vertical advection is implicit
 
| rowspan="3" |Check if the vertical advection is implicit
 
|0.0
 
|0.0
 
|Explicit
 
|Explicit
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|0.5
 
|0.5
 
|Hybrid for option in (0.0, 1.0)
 
|Hybrid for option in (0.0, 1.0)
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1.0
 
|1.0
 
|Implicit
 
|Implicit
Line 8,235: Line 9,855:
 
|INERTIAL_PERIODS
 
|INERTIAL_PERIODS
 
|The period after which the total effect of the baroclinic force is compute
 
|The period after which the total effect of the baroclinic force is compute
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,242: Line 9,865:
 
|INITIAL_ELEVATION
 
|INITIAL_ELEVATION
 
|Checks if the user wants to impose a initial elevation
 
|Checks if the user wants to impose a initial elevation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,249: Line 9,875:
 
|INITIAL_ELEVATION_VALUE
 
|INITIAL_ELEVATION_VALUE
 
|The user define with this keyword the initial elevation value
 
|The user define with this keyword the initial elevation value
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,256: Line 9,885:
 
|INITIAL_VEL_U
 
|INITIAL_VEL_U
 
|Checks  if the user pretends to impose a initial U (X) velocity
 
|Checks  if the user pretends to impose a initial U (X) velocity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,263: Line 9,895:
 
|INITIAL_VEL_V
 
|INITIAL_VEL_V
 
|Checks  if the user pretends to impose a initial V (Y) velocity
 
|Checks  if the user pretends to impose a initial V (Y) velocity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,272: Line 9,907:
 
|1
 
|1
 
|Imposed water level using the inverted barometer simplified solution
 
|Imposed water level using the inverted barometer simplified solution
 +
|
 +
|
 +
|
 
|-
 
|-
 
| Water
 
| Water
Line 8,278: Line 9,916:
 
|The user can also change the reference atmospheric pressure of the inverted barometer solution via this keyword
 
|The user can also change the reference atmospheric pressure of the inverted barometer solution via this keyword
 
|101325
 
|101325
 +
|
 +
|
 +
|
 
|
 
|
 
|-
 
|-
Line 8,283: Line 9,924:
 
|Hydrodynamic
 
|Hydrodynamic
 
|INTERNAL_CELERITY
 
|INTERNAL_CELERITY
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,291: Line 9,935:
 
|LOCAL_DENSITY
 
|LOCAL_DENSITY
 
|Check if the user want to divide the baroclinic pressure by the local density to compute. if this option is false is used the reference density  
 
|Check if the user want to divide the baroclinic pressure by the local density to compute. if this option is false is used the reference density  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="7" |Water
−
|Hydrodynamic
+
| rowspan="7" |Hydrodynamic
 
| rowspan="7" |LOCAL_SOLUTION
 
| rowspan="7" |LOCAL_SOLUTION
 
| rowspan="7" |Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 
| rowspan="7" |Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 
|1
 
|1
 
|No local solution
 
|No local solution
 +
| rowspan="7" |
 +
| rowspan="7" |
 +
| rowspan="7" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|Submodel
 
|Submodel
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|3
 
|3
 
|AssimilationField
 
|AssimilationField
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|4
 
|4
 
|Gauge
 
|Gauge
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|5
 
|5
 
|AssimilaPlusSubModel
 
|AssimilaPlusSubModel
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|6
 
|6
 
|GaugePlusSubModel
 
|GaugePlusSubModel
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|7
 
|7
 
|AssimilaGaugeSubModel
 
|AssimilaGaugeSubModel
Line 8,335: Line 9,973:
 
|MIN_COMPONENT
 
|MIN_COMPONENT
 
|The minimum component of the radiative wave below which the radiation process is canceled
 
|The minimum component of the radiative wave below which the radiation process is canceled
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,344: Line 9,985:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Water
 
| Water
 
|Hydrodynamic
 
|Hydrodynamic
 
|MIN_WATERLEVEL
 
|MIN_WATERLEVEL
 
|reference level below which the water level is corrected.
 
|reference level below which the water level is corrected.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,355: Line 10,002:
 
|Hydrodynamic
 
|Hydrodynamic
 
|MINVEL_BAROCLINIC
 
|MINVEL_BAROCLINIC
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,363: Line 10,013:
 
|MISSING_NULL
 
|MISSING_NULL
 
|Check if the user wants to replace the missing values by zero
 
|Check if the user wants to replace the missing values by zero
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,370: Line 10,023:
 
|MOMENTUM_DISCHARGE
 
|MOMENTUM_DISCHARGE
 
|Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
 
|Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,376: Line 10,032:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NH_ALPHA_LU
 
|NH_ALPHA_LU
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,383: Line 10,042:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NH_IMPLICIT_COEF_W
 
|NH_IMPLICIT_COEF_W
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,390: Line 10,052:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NH_MAXIT
 
|NH_MAXIT
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,397: Line 10,062:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NH_NORMALIZED_RESIDUAL
 
|NH_NORMALIZED_RESIDUAL
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,404: Line 10,072:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NH_RESIDUAL
 
|NH_RESIDUAL
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,412: Line 10,083:
 
|NONHYDROSTATIC
 
|NONHYDROSTATIC
 
|Checks if the user want to compute the effect of local vertical acceleration over the pressure field
 
|Checks if the user want to compute the effect of local vertical acceleration over the pressure field
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,418: Line 10,092:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NORMAL_BAROCLINIC
 
|NORMAL_BAROCLINIC
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,426: Line 10,103:
 
|NULL_BOUND_HORADV
 
|NULL_BOUND_HORADV
 
|Checks if the user wants to assume null horizontal advection in the open boundary
 
|Checks if the user wants to assume null horizontal advection in the open boundary
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,432: Line 10,112:
 
|Hydrodynamic
 
|Hydrodynamic
 
|NULL_BOUND_HORCONV
 
|NULL_BOUND_HORCONV
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,441: Line 10,124:
 
|Checks if the user want to parameterize the influence of an
 
|Checks if the user want to parameterize the influence of an
 
OBSTACLE in the flow, giving a determined drag coefficient
 
OBSTACLE in the flow, giving a determined drag coefficient
−
 
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,449: Line 10,134:
 
|OUTPUT_FACES
 
|OUTPUT_FACES
 
|Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.  
 
|Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,456: Line 10,144:
 
|OUTPUT_PROFILE
 
|OUTPUT_PROFILE
 
|Perform profile outputs in HDF5 format
 
|Perform profile outputs in HDF5 format
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,462: Line 10,153:
 
|Hydrodynamic
 
|Hydrodynamic
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,469: Line 10,163:
 
|Hydrodynamic
 
|Hydrodynamic
 
|POTENTIAL_ALGORITHM
 
|POTENTIAL_ALGORITHM
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="4" |Water
−
|Hydrodynamic
+
| rowspan="4" |Hydrodynamic
 
| rowspan="4" |RADIATION
 
| rowspan="4" |RADIATION
 
| rowspan="4" |Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
 
| rowspan="4" |Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
 
|0
 
|0
 
|No Radiation
 
|No Radiation
 +
| rowspan="4" |
 +
| rowspan="4" |
 +
| rowspan="4" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1
 
|1
 
|FlatherWindWave_
 
|FlatherWindWave_
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|FlatherLocalSolution_
 
|FlatherLocalSolution_
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|3
 
|3
 
|BlumbergKantha_
 
|BlumbergKantha_
Line 8,499: Line 10,193:
 
|RAMP
 
|RAMP
 
|Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
 
|Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,506: Line 10,203:
 
|RAMP_START
 
|RAMP_START
 
|This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
 
|This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,513: Line 10,213:
 
|RECORDING
 
|RECORDING
 
|Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
 
|Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,519: Line 10,222:
 
|Hydrodynamic
 
|Hydrodynamic
 
|REF_BOUND_WATERLEVEL
 
|REF_BOUND_WATERLEVEL
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,526: Line 10,232:
 
|Hydrodynamic
 
|Hydrodynamic
 
|RELAX_REF_VEL
 
|RELAX_REF_VEL
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,534: Line 10,243:
 
|RESIDUAL
 
|RESIDUAL
 
|Check if the user want to compute the residual flow  
 
|Check if the user want to compute the residual flow  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,541: Line 10,253:
 
|RESTART_FILE_OUTPUT_TIME
 
|RESTART_FILE_OUTPUT_TIME
 
|Output Time to write restart files
 
|Output Time to write restart files
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,548: Line 10,263:
 
|RESTART_FILE_OVERWRITE
 
|RESTART_FILE_OVERWRITE
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,555: Line 10,273:
 
|SLIPPING_CONDITION
 
|SLIPPING_CONDITION
 
|Checks if the user want to consider the slipping condition for horizontal diffusion
 
|Checks if the user want to consider the slipping condition for horizontal diffusion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,563: Line 10,284:
 
|Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplied by a coefficient that has linear evolution between 0 and 1.
 
|Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplied by a coefficient that has linear evolution between 0 and 1.
 
By default this period is zero seconds
 
By default this period is zero seconds
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,570: Line 10,294:
 
|STATISTICS
 
|STATISTICS
 
|Checks out if the user pretends the statistics of the hydrodynamic properties
 
|Checks out if the user pretends the statistics of the hydrodynamic properties
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,577: Line 10,304:
 
|STATISTICS_FILE
 
|STATISTICS_FILE
 
|The statistics definition file of the hydrodynamic properties
 
|The statistics definition file of the hydrodynamic properties
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,584: Line 10,314:
 
|SUBMODEL
 
|SUBMODEL
 
|Check if the user wants to run this model as a submodel
 
|Check if the user wants to run this model as a submodel
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,591: Line 10,324:
 
|SURFACEWATERFLUX
 
|SURFACEWATERFLUX
 
|Checks if the user want to consider the effect of precipitation and evaporation
 
|Checks if the user want to consider the effect of precipitation and evaporation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,598: Line 10,334:
 
|TIDE
 
|TIDE
 
|Checks if the user pretends to impose a wave tide in the open boundary
 
|Checks if the user pretends to impose a wave tide in the open boundary
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,605: Line 10,344:
 
|TIDEPOTENTIAL
 
|TIDEPOTENTIAL
 
|Checks if the user want to consider the effect of the potential tide
 
|Checks if the user want to consider the effect of the potential tide
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,612: Line 10,354:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Checks out if the user pretends to write a time serie
 
|Checks out if the user pretends to write a time serie
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,618: Line 10,363:
 
|Hydrodynamic
 
|Hydrodynamic
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,626: Line 10,374:
 
|TLAG_FILE
 
|TLAG_FILE
 
|The name file where are the relaxation times defined for the radiation boundary condition  
 
|The name file where are the relaxation times defined for the radiation boundary condition  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,632: Line 10,383:
 
|Hydrodynamic
 
|Hydrodynamic
 
|TVD_METHOD_H
 
|TVD_METHOD_H
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,639: Line 10,393:
 
|Hydrodynamic
 
|Hydrodynamic
 
|TVD_METHOD_V
 
|TVD_METHOD_V
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |UP_CENTER
 
| rowspan="3" |UP_CENTER
 
| rowspan="3" |Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme
 
| rowspan="3" |Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme
 
|0.0
 
|0.0
 
|Centred differences
 
|Centred differences
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|0.5
 
|0.5
 
|Hybrid for option in (0,1)
 
|Hybrid for option in (0,1)
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1.0
 
|1.0
 
|Upstream
 
|Upstream
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Hydrodynamic
+
| rowspan="2" |Hydrodynamic
 
| rowspan="2" |VELNORMALBOUNDARY
 
| rowspan="2" |VELNORMALBOUNDARY
 
| rowspan="2" |Checks the velocities the user want to impose in the exterior faces
 
| rowspan="2" |Checks the velocities the user want to impose in the exterior faces
 
|1
 
|1
 
|null value
 
|null value
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
+
|2
−
|Hydrodynamic
 
−
|2
 
 
|null gradient
 
|null gradient
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Hydrodynamic
+
| rowspan="2" |Hydrodynamic
 
| rowspan="2" |VELTANGENTIALBOUNDARY
 
| rowspan="2" |VELTANGENTIALBOUNDARY
 
| rowspan="2" |Checks the velocities the user want to impose between two boundary points
 
| rowspan="2" |Checks the velocities the user want to impose between two boundary points
 
|1
 
|1
 
|null value
 
|null value
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|null gradient
 
|null gradient
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
−
|VERTICAL_AXISYMMETRIC
+
| rowspan="3" |VERTICAL_AXISYMMETRIC
−
|Checks if the user wants to simulate implicit the sea level evolution (by default is ADI). This option only works if the flow has only one horizontal dimension. (0 - ADI; 1 - X always implicit; 2 - Y always implicit)
+
| rowspan="3" |Checks if the user wants to simulate implicit the sea level evolution. This option only works if the flow has only one horizontal dimension.  
−
|
+
|0
−
|
+
|ADI
 +
| rowspan="3" |0
 +
| rowspan="3" |
 +
| rowspan="3" |INTEGER
 +
|-
 +
|1
 +
|X always implicit
 +
|-
 +
|2
 +
|Y always implicit
 
|-
 
|-
 
| Water
 
| Water
Line 8,695: Line 10,462:
 
|VERTICALADVECTION
 
|VERTICALADVECTION
 
|Checks  if the user pretends to compute the vertical advection effect
 
|Checks  if the user pretends to compute the vertical advection effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,701: Line 10,471:
 
|Hydrodynamic
 
|Hydrodynamic
 
|VERTICALCONVECTION
 
|VERTICALCONVECTION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,709: Line 10,482:
 
|VERTICALDIFFUSION
 
|VERTICALDIFFUSION
 
|Checks  if the user pretends to compute the vertical diffusion effect
 
|Checks  if the user pretends to compute the vertical diffusion effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,716: Line 10,492:
 
|VMIN_CHEZY
 
|VMIN_CHEZY
 
|Checks the minimum velocity (Vmin_Chezy) below which the chezy coefficient is constant if the water column is smaller than Hmin_Chezy. By default Vmin_Chezy is equal to 0.10 m/s
 
|Checks the minimum velocity (Vmin_Chezy) below which the chezy coefficient is constant if the water column is smaller than Hmin_Chezy. By default Vmin_Chezy is equal to 0.10 m/s
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,722: Line 10,501:
 
|Hydrodynamic
 
|Hydrodynamic
 
|VOLUME_RELATION_MAX
 
|VOLUME_RELATION_MAX
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,730: Line 10,512:
 
|VOLUMEVARIATION
 
|VOLUMEVARIATION
 
|Checks  if the user pretends to compute the volume variation effect
 
|Checks  if the user pretends to compute the volume variation effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,737: Line 10,522:
 
|WATER_DISCHARGES
 
|WATER_DISCHARGES
 
|Check if the user want to water discharges
 
|Check if the user want to water discharges
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,744: Line 10,532:
 
|WATERCOLUMN2D
 
|WATERCOLUMN2D
 
|water column thickness below which the 3D processes are disconnected  
 
|water column thickness below which the 3D processes are disconnected  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,751: Line 10,542:
 
|WATERLEVEL_MAX_MIN
 
|WATERLEVEL_MAX_MIN
 
|Computes the spatial maps of the maximum and of the minimum water elevation.
 
|Computes the spatial maps of the maximum and of the minimum water elevation.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,758: Line 10,552:
 
|WAVE_DIRECTION
 
|WAVE_DIRECTION
 
|The user with this keyword give a direction to a wave entering the domain
 
|The user with this keyword give a direction to a wave entering the domain
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,765: Line 10,562:
 
|WAVE_STRESS
 
|WAVE_STRESS
 
|Checks if the user want to consider the effect of the waves stress. By default the waves stress is not compute
 
|Checks if the user want to consider the effect of the waves stress. By default the waves stress is not compute
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Hydrodynamic
+
| rowspan="3" |Hydrodynamic
 
| rowspan="3" |WIND
 
| rowspan="3" |WIND
 
| rowspan="3" |Checks if the user want to consider the effect of the wind stress. By default the wind stress is not computed
 
| rowspan="3" |Checks if the user want to consider the effect of the wind stress. By default the wind stress is not computed
 
|0
 
|0
 
|No wind forcing
 
|No wind forcing
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|1
 
|1
 
|wind forcing
 
|wind forcing
 
|-
 
|-
−
| Water
 
−
|Hydrodynamic
 
 
|2
 
|2
 
|wind forcing with a smooth start
 
|wind forcing with a smooth start
Line 8,789: Line 10,588:
 
|WIND_SMOOTH_PERIOD
 
|WIND_SMOOTH_PERIOD
 
|The user specify the wind smooth period
 
|The user specify the wind smooth period
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,796: Line 10,598:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamicFile.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleHydrodynamicFile.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 8,804: Line 10,605:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|HydrodynamicFile
+
| rowspan="2" |HydrodynamicFile
 
| rowspan="2" |BAT_INTEGRATION_TYPE
 
| rowspan="2" |BAT_INTEGRATION_TYPE
 
| rowspan="2" |It is possible to calculate the new bathymetry (spacial integration) using two different options
 
| rowspan="2" |It is possible to calculate the new bathymetry (spacial integration) using two different options
 
|MaxVal_Type
 
|MaxVal_Type
 
|Each new integrated cell has the maximum value of the cells used to do the integration of that cell
 
|Each new integrated cell has the maximum value of the cells used to do the integration of that cell
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|HydrodynamicFile
 
 
|MeanVal_Type
 
|MeanVal_Type
 
|The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.
 
|The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.
Line 8,821: Line 10,626:
 
|DT_HYDROFILE
 
|DT_HYDROFILE
 
|Time Step of the hydrodynamic file
 
|Time Step of the hydrodynamic file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,828: Line 10,636:
 
|IN_FIELD
 
|IN_FIELD
 
|Input File Name
 
|Input File Name
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,836: Line 10,647:
 
| rowspan="2" |Input File Type
 
| rowspan="2" |Input File Type
 
|BeginEnd_type
 
|BeginEnd_type
 +
|
 +
|
 +
|
 
|
 
|
 
|-
 
|-
Line 8,841: Line 10,655:
 
|HydrodynamicFile
 
|HydrodynamicFile
 
|M2_Tide_type
 
|M2_Tide_type
 +
|
 +
|
 +
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|HydrodynamicFile
+
| rowspan="2" |HydrodynamicFile
 
| rowspan="2" |IN_FILE_VERSION
 
| rowspan="2" |IN_FILE_VERSION
 
| rowspan="2" |Input File Version
 
| rowspan="2" |Input File Version
 
|1
 
|1
 
|Only available if LOAD_TO_MEMORY = 0
 
|Only available if LOAD_TO_MEMORY = 0
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|HydrodynamicFile
 
 
|2
 
|2
 
|
 
|
Line 8,859: Line 10,677:
 
|LOAD_TO_MEMORY
 
|LOAD_TO_MEMORY
 
|Load all information to memory
 
|Load all information to memory
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,866: Line 10,687:
 
|N_ITEGRATION_CELLS
 
|N_ITEGRATION_CELLS
 
|Number of cells that will be integrated (the integration space step)
 
|Number of cells that will be integrated (the integration space step)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,873: Line 10,697:
 
|NEW_BATIM
 
|NEW_BATIM
 
|Gets the name of the new bathymetry
 
|Gets the name of the new bathymetry
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,880: Line 10,707:
 
|OUT_FIELD
 
|OUT_FIELD
 
|Ouput Data File
 
|Ouput Data File
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|HydrodynamicFile
+
| rowspan="2" |HydrodynamicFile
 
| rowspan="2" |OUT_FILE_VERSION
 
| rowspan="2" |OUT_FILE_VERSION
 
| rowspan="2" |Controls the version of the output file
 
| rowspan="2" |Controls the version of the output file
 
|1
 
|1
 
|
 
|
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|HydrodynamicFile
 
 
|2
 
|2
 
|
 
|
Line 8,899: Line 10,730:
 
|SPACE_INTEGRATION
 
|SPACE_INTEGRATION
 
|Verifies if the integration of fluxes in space is to be done
 
|Verifies if the integration of fluxes in space is to be done
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,906: Line 10,740:
 
|TIME_INTEGRATION
 
|TIME_INTEGRATION
 
|Performs an integration in time,  
 
|Performs an integration in time,  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,913: Line 10,750:
 
|WINDOW
 
|WINDOW
 
|It is possible to define a window inside a bathymetry, where we want to record values to the hydrodynamic file
 
|It is possible to define a window inside a bathymetry, where we want to record values to the hydrodynamic file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,920: Line 10,760:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleInterfaceSedimentWater.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleInterfaceSedimentWater.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 8,928: Line 10,767:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
 
|InterfaceSedimentWater
 
|InterfaceSedimentWater
−
|begin_diff_coef
+
|BEGIN_DIFF_COEF
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,940: Line 10,785:
 
|BENTHOS
 
|BENTHOS
 
|Compute property benthic ecological processes  
 
|Compute property benthic ecological processes  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,947: Line 10,795:
 
|BOX_TIME_SERIE
 
|BOX_TIME_SERIE
 
|Outputs property results in box time series
 
|Outputs property results in box time series
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,954: Line 10,805:
 
|BOXFLUXES
 
|BOXFLUXES
 
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
 
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,961: Line 10,815:
 
|CEQUALW2
 
|CEQUALW2
 
|Compute property CEQUALW2 benthic ecological processes
 
|Compute property CEQUALW2 benthic ecological processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,970: Line 10,827:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Water
 
| Water
 
|InterfaceSedimentWater
 
|InterfaceSedimentWater
 
|DEPOSITION
 
|DEPOSITION
 
|Compute property deposition
 
|Compute property deposition
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,982: Line 10,845:
 
|DESCRIPTION
 
|DESCRIPTION
 
|Brief description of the property
 
|Brief description of the property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,989: Line 10,855:
 
|DESCRIPTION
 
|DESCRIPTION
 
|Description of the rate to perform output
 
|Description of the rate to perform output
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 8,996: Line 10,865:
 
|DETRITUS
 
|DETRITUS
 
|Compute property as detritus
 
|Compute property as detritus
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,003: Line 10,875:
 
|EROSION
 
|EROSION
 
|Compute property erosion
 
|Compute property erosion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,010: Line 10,885:
 
|FIRSTPROP
 
|FIRSTPROP
 
|Name of the first property involved in the rate
 
|Name of the first property involved in the rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,017: Line 10,895:
 
|MASS_LIMITATION
 
|MASS_LIMITATION
 
|Property mass is finite
 
|Property mass is finite
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,024: Line 10,905:
 
|MASS_MIN
 
|MASS_MIN
 
|Minimum mass allowed for the property if MASS_LIMITATION is on. Values of zero are allowed.
 
|Minimum mass allowed for the property if MASS_LIMITATION is on. Values of zero are allowed.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,031: Line 10,915:
 
|NAME
 
|NAME
 
|Name of the property
 
|Name of the property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,038: Line 10,925:
 
|NAME
 
|NAME
 
|Name of the rate to perform output
 
|Name of the rate to perform output
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,045: Line 10,935:
 
|OLD
 
|OLD
 
|Initialization is made based on previous run (overrides FillMatrix keywords)
 
|Initialization is made based on previous run (overrides FillMatrix keywords)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,052: Line 10,945:
 
|OUTPUT_HDF
 
|OUTPUT_HDF
 
|Outputs property results in HDF5 format
 
|Outputs property results in HDF5 format
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,059: Line 10,955:
 
|OUTPUT_SHEAR_STRESS
 
|OUTPUT_SHEAR_STRESS
 
|Output shear stress in HDF format
 
|Output shear stress in HDF format
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,066: Line 10,965:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,073: Line 10,975:
 
|PARTICULATE
 
|PARTICULATE
 
|Property physical state: 0 - Dissolved; 1 - Particulate
 
|Property physical state: 0 - Dissolved; 1 - Particulate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,080: Line 10,985:
 
|REFERENCE_DEPTH
 
|REFERENCE_DEPTH
 
|Reference depth below which shear stress is limited. Keyword is only read if SHEAR_STRESS_LIMITATION is on.
 
|Reference depth below which shear stress is limited. Keyword is only read if SHEAR_STRESS_LIMITATION is on.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,087: Line 10,995:
 
|REFERENCE_SHEAR_STRESS
 
|REFERENCE_SHEAR_STRESS
 
|Shear stress value assumed in limited cells when SHEAR_STRESS_LIMITATION is on
 
|Shear stress value assumed in limited cells when SHEAR_STRESS_LIMITATION is on
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,094: Line 11,005:
 
|RESTART_FILE_OUTPUT_TIME
 
|RESTART_FILE_OUTPUT_TIME
 
|Output Time to write restart files
 
|Output Time to write restart files
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,101: Line 11,015:
 
|RESTART_FILE_OVERWRITE
 
|RESTART_FILE_OVERWRITE
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,108: Line 11,025:
 
|SAND_TRANSPORT
 
|SAND_TRANSPORT
 
|Compute sand tranport
 
|Compute sand tranport
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,115: Line 11,035:
 
|SECONDPROP
 
|SECONDPROP
 
|Name of the second property involved in the rate
 
|Name of the second property involved in the rate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,122: Line 11,045:
 
|SEDIMENT_FLUXES
 
|SEDIMENT_FLUXES
 
|Compute property fluxes between interface sediment-water and sediment column
 
|Compute property fluxes between interface sediment-water and sediment column
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,129: Line 11,055:
 
|SEDIMENT_WATER_FLUXES
 
|SEDIMENT_WATER_FLUXES
 
|Compute property fluxes between sediment and water column
 
|Compute property fluxes between sediment and water column
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,136: Line 11,065:
 
|SHEAR_STRESS_LIMITATION
 
|SHEAR_STRESS_LIMITATION
 
|Limit shear stress values in shallow zones
 
|Limit shear stress values in shallow zones
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,143: Line 11,075:
 
|STATISTICS_SHEAR
 
|STATISTICS_SHEAR
 
|Perform statistics to shear velocity
 
|Perform statistics to shear velocity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,150: Line 11,085:
 
|STATISTICS_SHEAR_FILE
 
|STATISTICS_SHEAR_FILE
 
|Path to statistics input data file. Only read if STATISTICS_SHEAR is on.
 
|Path to statistics input data file. Only read if STATISTICS_SHEAR is on.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,157: Line 11,095:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Outputs property results in time series
 
|Outputs property results in time series
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,164: Line 11,105:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to time serie locations file
 
|Path to time serie locations file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,171: Line 11,115:
 
|UNITS
 
|UNITS
 
|Property units
 
|Property units
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,178: Line 11,125:
 
|WATER_FLUXES
 
|WATER_FLUXES
 
|Compute property fluxes to/from water column
 
|Compute property fluxes to/from water column
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,185: Line 11,135:
 
|WAVETENSION
 
|WAVETENSION
 
|Compute wave induced shear stress
 
|Compute wave induced shear stress
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module Jet===
 
=== Module Jet===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleJet.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleJet.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 9,199: Line 11,152:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 9,204: Line 11,160:
 
|BOTTOM_SALINITY
 
|BOTTOM_SALINITY
 
|ambient bottom salinity when a LINEAR water column is admitted
 
|ambient bottom salinity when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,211: Line 11,170:
 
|BOTTOM_TEMPERATURE
 
|BOTTOM_TEMPERATURE
 
|ambient bottom temperature when a LINEAR water column is admitted
 
|ambient bottom temperature when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,218: Line 11,180:
 
|BOTTOM_VELU
 
|BOTTOM_VELU
 
|ambient bottom velocity U when a LINEAR water column is admitted
 
|ambient bottom velocity U when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,225: Line 11,190:
 
|BOTTOM_VELV
 
|BOTTOM_VELV
 
|ambient bottom velocity V when a LINEAR water column is admitted
 
|ambient bottom velocity V when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,232: Line 11,200:
 
|DEFAULT_SALINITY
 
|DEFAULT_SALINITY
 
|ambient salinity when a UNIFORM water column is admitted
 
|ambient salinity when a UNIFORM water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,239: Line 11,210:
 
|DEFAULT_TEMPERATURE
 
|DEFAULT_TEMPERATURE
 
|ambient temperature when a UNIFORM water column is admitted
 
|ambient temperature when a UNIFORM water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,246: Line 11,220:
 
|DEFAULT_VELU
 
|DEFAULT_VELU
 
|ambient velocity U when a UNIFORM water column is admitted
 
|ambient velocity U when a UNIFORM water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,253: Line 11,230:
 
|DEFAULT_VELV
 
|DEFAULT_VELV
 
|ambient velocity V when a UNIFORM water column is admitted
 
|ambient velocity V when a UNIFORM water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,260: Line 11,240:
 
|DT_OUTPUT
 
|DT_OUTPUT
 
|Time interval between outputs
 
|Time interval between outputs
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,267: Line 11,250:
 
|INITIAL_TRACER_CONCENTRATION
 
|INITIAL_TRACER_CONCENTRATION
 
|Initial concentration of generic tracer
 
|Initial concentration of generic tracer
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,273: Line 11,259:
 
|Jet
 
|Jet
 
|LAGRANGIAN
 
|LAGRANGIAN
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Jet
+
| rowspan="3" |Jet
 
| rowspan="3" |LOCAL_TYPE
 
| rowspan="3" |LOCAL_TYPE
 
| rowspan="3" |Methodology to define the ambient variables
 
| rowspan="3" |Methodology to define the ambient variables
 
|FIELD3D
 
|FIELD3D
 
|3D field generated by the MOHID system
 
|3D field generated by the MOHID system
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Jet
 
 
|LINEAR
 
|LINEAR
 
|Water column where the density and velocity have a linear profile
 
|Water column where the density and velocity have a linear profile
 
|-
 
|-
−
| Water
 
−
|Jet
 
 
|UNIFORM  
 
|UNIFORM  
 
|Uniform water column
 
|Uniform water column
Line 9,298: Line 11,286:
 
|MAX_DT
 
|MAX_DT
 
|Maximum time step interval
 
|Maximum time step interval
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,305: Line 11,296:
 
|MAX_DV
 
|MAX_DV
 
|Maximum volume variation between time steps
 
|Maximum volume variation between time steps
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,312: Line 11,306:
 
|MAX_PLUME_DIAMETER
 
|MAX_PLUME_DIAMETER
 
|Plume diameter from which initial dilution stops. This value is used to simulate the jets overlapping
 
|Plume diameter from which initial dilution stops. This value is used to simulate the jets overlapping
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,319: Line 11,316:
 
|OUTFALL_ANGLE
 
|OUTFALL_ANGLE
 
|Outfall angle
 
|Outfall angle
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,326: Line 11,326:
 
|OUTFALL_LENGTH
 
|OUTFALL_LENGTH
 
|Outfall length
 
|Outfall length
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,333: Line 11,336:
 
|OUTPUT_TYPE
 
|OUTPUT_TYPE
 
|The output can be made given the exact information in specific output times or a cloud of particles for each output time
 
|The output can be made given the exact information in specific output times or a cloud of particles for each output time
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Jet
+
| rowspan="2" |Jet
 
| rowspan="2" |PARAMETERIZATION
 
| rowspan="2" |PARAMETERIZATION
 
| rowspan="2" |Parametrization used to simulate the entrainment process
 
| rowspan="2" |Parametrization used to simulate the entrainment process
 
|CORJET
 
|CORJET
 
|Parameterization based on CORJET model
 
|Parameterization based on CORJET model
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Jet
 
 
|JETLAG
 
|JETLAG
 
|Parameterization based on JETLAG model
 
|Parameterization based on JETLAG model
Line 9,352: Line 11,359:
 
|PARTICLES_NUMBER
 
|PARTICLES_NUMBER
 
|In case of OUTPUT_TYPE = CLOUD this is the number of output tracer per output time interval
 
|In case of OUTPUT_TYPE = CLOUD this is the number of output tracer per output time interval
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,359: Line 11,369:
 
|PORT_ANGLE_HZ
 
|PORT_ANGLE_HZ
 
|Port vertical angle
 
|Port vertical angle
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,366: Line 11,379:
 
|PORT_ANGLE_XY
 
|PORT_ANGLE_XY
 
|Port horizontal angle
 
|Port horizontal angle
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,373: Line 11,389:
 
|PORT_BOTTOM_DISTANCE
 
|PORT_BOTTOM_DISTANCE
 
|Port distance from the bottom
 
|Port distance from the bottom
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,380: Line 11,399:
 
|PORT_DIAMETER
 
|PORT_DIAMETER
 
|Diameter of each port
 
|Diameter of each port
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,387: Line 11,409:
 
|PORTS_NUMBER
 
|PORTS_NUMBER
 
|Number of Ports
 
|Number of Ports
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,394: Line 11,419:
 
|RUN_MAX_PERIOD
 
|RUN_MAX_PERIOD
 
|Maximum run period
 
|Maximum run period
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,401: Line 11,429:
 
|RUN_MIN_PERIOD
 
|RUN_MIN_PERIOD
 
|Minimum run period
 
|Minimum run period
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,407: Line 11,438:
 
|Jet
 
|Jet
 
|SEDIMENT_COLUMN
 
|SEDIMENT_COLUMN
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,415: Line 11,449:
 
|SURFACE_SALINITY
 
|SURFACE_SALINITY
 
|ambient surface salinity when a LINEAR water column is admitted
 
|ambient surface salinity when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,422: Line 11,459:
 
|SURFACE_TEMPERATURE
 
|SURFACE_TEMPERATURE
 
|ambient surface temperature when a LINEAR water column is admitted
 
|ambient surface temperature when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,429: Line 11,469:
 
|SURFACE_VELU
 
|SURFACE_VELU
 
|ambient surface velocity U when a LINEAR water column is admitted
 
|ambient surface velocity U when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,436: Line 11,479:
 
|SURFACE_VELV
 
|SURFACE_VELV
 
|ambient surface velocity V when a LINEAR water column is admitted
 
|ambient surface velocity V when a LINEAR water column is admitted
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,442: Line 11,488:
 
|Jet
 
|Jet
 
|WAVES
 
|WAVES
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,450: Line 11,502:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleLagrangian.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleLagrangian.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 9,458: Line 11,509:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
−
|-
+
! scope="col" |Default Value
−
| Water
+
! scope="col" |Units
−
|Lagrangian
+
! scope="col" |Type
 +
|-
 +
| rowspan="2" |Water
 +
| rowspan="2" |Lagrangian
 
| rowspan="2" |ACCIDENT_METHOD
 
| rowspan="2" |ACCIDENT_METHOD
 
| rowspan="2" |How to distribute initially the particles if the emission type is accident
 
| rowspan="2" |How to distribute initially the particles if the emission type is accident
 
|1
 
|1
 
|The "Fay" option
 
|The "Fay" option
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|2
 
|2
 
|The "Thickness" option
 
|The "Thickness" option
Line 9,476: Line 11,531:
 
|Time when the accident occur.  
 
|Time when the accident occur.  
 
By default is equal to the model start time
 
By default is equal to the model start time
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,483: Line 11,541:
 
|ADVECTION
 
|ADVECTION
 
|Move Particle due to horizontal velocity.
 
|Move Particle due to horizontal velocity.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,490: Line 11,551:
 
|AMBIENT_CONC
 
|AMBIENT_CONC
 
|Ambient concentration.
 
|Ambient concentration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,497: Line 11,561:
 
|ASSOCIATE_BEACH_PROB
 
|ASSOCIATE_BEACH_PROB
 
|Checks if the user want to associate beaching probability to the particles
 
|Checks if the user want to associate beaching probability to the particles
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,503: Line 11,570:
 
|Lagrangian
 
|Lagrangian
 
|BEACHING
 
|BEACHING
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,511: Line 11,581:
 
|BEACHING_BOX_FILENAME
 
|BEACHING_BOX_FILENAME
 
|Link to the data file which contains the definition of the boxes used for defining the beaching probability.
 
|Link to the data file which contains the definition of the boxes used for defining the beaching probability.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,518: Line 11,591:
 
|BEACHING_LIMIT
 
|BEACHING_LIMIT
 
|Maximum distance between particles and coast for particle beaching  
 
|Maximum distance between particles and coast for particle beaching  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,525: Line 11,601:
 
|BOTTOM_DISTANCE
 
|BOTTOM_DISTANCE
 
|Distance from bottom below which the tracer can sediment.
 
|Distance from bottom below which the tracer can sediment.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,532: Line 11,611:
 
|BOTTOM_EMISSION
 
|BOTTOM_EMISSION
 
|Checks if the tracers are emited from the bottom.
 
|Checks if the tracers are emited from the bottom.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,539: Line 11,621:
 
|BOX_NUMBER
 
|BOX_NUMBER
 
|Number of box to associate to origin.
 
|Number of box to associate to origin.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,546: Line 11,631:
 
|BOXES_BEACHING_PROB
 
|BOXES_BEACHING_PROB
 
|List of Inbox Beaching Probability.
 
|List of Inbox Beaching Probability.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,553: Line 11,641:
 
|BOXVOLINIC
 
|BOXVOLINIC
 
|Initial Volume of a particle in the box.
 
|Initial Volume of a particle in the box.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,560: Line 11,651:
 
|COEF_INITIAL_MIXING
 
|COEF_INITIAL_MIXING
 
|Coefficient use to control volume increase due to initial mixing
 
|Coefficient use to control volume increase due to initial mixing
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,567: Line 11,661:
 
|COMPUTE_AGE
 
|COMPUTE_AGE
 
|This logical option allows to compute the age of each tracer.
 
|This logical option allows to compute the age of each tracer.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,574: Line 11,671:
 
|COMPUTE_BUOYANCY
 
|COMPUTE_BUOYANCY
 
|Computes Particle vertical velocity evolution due to density gradients
 
|Computes Particle vertical velocity evolution due to density gradients
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,581: Line 11,681:
 
|COMPUTE_PLUME
 
|COMPUTE_PLUME
 
|Computes Particle Plume due density gradients
 
|Computes Particle Plume due density gradients
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,588: Line 11,691:
 
|CONC_COLUMN
 
|CONC_COLUMN
 
|Column of the time serie input where is defined a variable concentration.
 
|Column of the time serie input where is defined a variable concentration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,595: Line 11,701:
 
|CONC_VARIABLE
 
|CONC_VARIABLE
 
|Check if the user wants a variable concentration.
 
|Check if the user wants a variable concentration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,602: Line 11,711:
 
|CONCENTRATION
 
|CONCENTRATION
 
|Concentration of the property.
 
|Concentration of the property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,608: Line 11,720:
 
|Lagrangian
 
|Lagrangian
 
|D50
 
|D50
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,618: Line 11,733:
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Water
+
|
−
|Lagrangian
+
|
 +
|-
 +
| rowspan="3" |Water
 +
| rowspan="3" |Lagrangian
 
| rowspan="3" |DENSITY_METHOD
 
| rowspan="3" |DENSITY_METHOD
 
| rowspan="3" |Formula to calculate particle density
 
| rowspan="3" |Formula to calculate particle density
 
|1
 
|1
 
|Leendertse
 
|Leendertse
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|2
 
|2
 
|UNESCO
 
|UNESCO
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|3
 
|3
 
|Constant
 
|Constant
Line 9,640: Line 11,757:
 
|DEPOSITION
 
|DEPOSITION
 
|Checks if the tracers can deposited.
 
|Checks if the tracers can deposited.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,647: Line 11,767:
 
|DEPTH_CELLS
 
|DEPTH_CELLS
 
|Depth in Cells (from bottom)
 
|Depth in Cells (from bottom)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,654: Line 11,777:
 
|DEPTH_METERS
 
|DEPTH_METERS
 
|Depth of emission relativ to surface.
 
|Depth of emission relativ to surface.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,661: Line 11,787:
 
|DISCHARGE_FILE
 
|DISCHARGE_FILE
 
|A Link to the data file whichs contains the time serie of the variable flow
 
|A Link to the data file whichs contains the time serie of the variable flow
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,668: Line 11,797:
 
|DT_EMIT
 
|DT_EMIT
 
|The interval between emissions. By default this value is equal to DT_PARTIC
 
|The interval between emissions. By default this value is equal to DT_PARTIC
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,675: Line 11,807:
 
|DT_PARTIC
 
|DT_PARTIC
 
|Particle Time Step
 
|Particle Time Step
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Lagrangian
+
| rowspan="3" |Lagrangian
 
| rowspan="3" |EMISSION_SPATIAL
 
| rowspan="3" |EMISSION_SPATIAL
 
| rowspan="3" |Type of spatial emission.
 
| rowspan="3" |Type of spatial emission.
 
|Accident
 
|Accident
 
|Emission as accident
 
|Emission as accident
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Box
 
|Box
 
|Emission from a Box
 
|Emission from a Box
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Point
 
|Point
 
|Emission at a single point
 
|Emission at a single point
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |EMISSION_TEMPORAL
 
| rowspan="2" |EMISSION_TEMPORAL
 
| rowspan="2" |Type of temporal emission
 
| rowspan="2" |Type of temporal emission
 
|Continuous
 
|Continuous
 
|Continuous emission
 
|Continuous emission
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Instantaneous
 
|Instantaneous
 
|Instantaneous emission
 
|Instantaneous emission
Line 9,711: Line 11,846:
 
|EROSION_RATE
 
|EROSION_RATE
 
|Rate of tracers erosion.
 
|Rate of tracers erosion.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,718: Line 11,856:
 
|EULERIAN_MONITOR
 
|EULERIAN_MONITOR
 
|Path to a boxes file to integrate eulerian  concentrations based on lagrangian tracers
 
|Path to a boxes file to integrate eulerian  concentrations based on lagrangian tracers
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,726: Line 11,867:
 
|This property has an extinction parameter. This parameter can be use  
 
|This property has an extinction parameter. This parameter can be use  
 
to compute the effect of this property in the light extinction
 
to compute the effect of this property in the light extinction
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,733: Line 11,877:
 
|FLOAT
 
|FLOAT
 
|Indicates if the particle is a floating particle (e.g. oil)
 
|Indicates if the particle is a floating particle (e.g. oil)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,740: Line 11,887:
 
|FLOW
 
|FLOW
 
|The flow of the point emission
 
|The flow of the point emission
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,747: Line 11,897:
 
|FLOW_COLUMN
 
|FLOW_COLUMN
 
|The data column of the flow values which define the time serie of the variable flow
 
|The data column of the flow values which define the time serie of the variable flow
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,754: Line 11,907:
 
|FLOW_VARIABLE
 
|FLOW_VARIABLE
 
|Checks if the flow of the point emission is variable DT
 
|Checks if the flow of the point emission is variable DT
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,761: Line 11,917:
 
|GROUP_ID
 
|GROUP_ID
 
|The Group ID to which the origin belongs
 
|The Group ID to which the origin belongs
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,770: Line 11,929:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Water
 
| Water
 
|Lagrangian
 
|Lagrangian
 
|JET_DATA_FILE
 
|JET_DATA_FILE
 
|Link to the data file which contains the Plume / Jet parameterizations
 
|Link to the data file which contains the Plume / Jet parameterizations
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,782: Line 11,947:
 
|JET_DT
 
|JET_DT
 
|Time interval for the actualization of Plume Jet properties
 
|Time interval for the actualization of Plume Jet properties
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,789: Line 11,957:
 
|KILL_LAND_PARTICLES
 
|KILL_LAND_PARTICLES
 
|Kills particles which are located in a Waterpoint which is not a OpenPoint   
 
|Kills particles which are located in a Waterpoint which is not a OpenPoint   
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,797: Line 11,968:
 
|Check is the user wants to maintain  
 
|Check is the user wants to maintain  
 
the vertical relative position of the origin
 
the vertical relative position of the origin
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,803: Line 11,977:
 
|Lagrangian
 
|Lagrangian
 
|MIN_CONCENTRATION
 
|MIN_CONCENTRATION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,811: Line 11,988:
 
|MIN_SED_VELOCITY
 
|MIN_SED_VELOCITY
 
|Minimum Sedimention velocity.
 
|Minimum Sedimention velocity.
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,818: Line 11,997:
 
|MONITOR_BOX
 
|MONITOR_BOX
 
|Link to the data file which contains the definition of the boxes used for particle "monitoring" (Residence Time)
 
|Link to the data file which contains the definition of the boxes used for particle "monitoring" (Residence Time)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,825: Line 12,007:
 
|MONITOR_BOX_PROP_MASS
 
|MONITOR_BOX_PROP_MASS
 
|Name of property to monitor mass in a box
 
|Name of property to monitor mass in a box
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |MOVEMENT
 
| rowspan="2" |MOVEMENT
 
| rowspan="2" |Type of particle aleatory horizontal movement
 
| rowspan="2" |Type of particle aleatory horizontal movement
 
|NotRandom  
 
|NotRandom  
 
|Do not consider any aleatory horizontal component
 
|Do not consider any aleatory horizontal component
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|SullivanAllen
 
|SullivanAllen
 
|Parameterization based on Sullivan Allen formulation
 
|Parameterization based on Sullivan Allen formulation
Line 9,844: Line 12,030:
 
|MOVING_ORIGIN
 
|MOVING_ORIGIN
 
|Checks if the Origin has a moving location
 
|Checks if the Origin has a moving location
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,851: Line 12,040:
 
|MOVING_ORIGIN_COLUMN_X
 
|MOVING_ORIGIN_COLUMN_X
 
|The data column in which the X position values are given
 
|The data column in which the X position values are given
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,858: Line 12,050:
 
|MOVING_ORIGIN_COLUMN_Y
 
|MOVING_ORIGIN_COLUMN_Y
 
|The data column in which the Y position values are given
 
|The data column in which the Y position values are given
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,865: Line 12,060:
 
|MOVING_ORIGIN_FILE
 
|MOVING_ORIGIN_FILE
 
|A Link to the data file which contains the time serie of the position of the origin
 
|A Link to the data file which contains the time serie of the position of the origin
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |MOVING_ORIGIN_UNITS
 
| rowspan="2" |MOVING_ORIGIN_UNITS
 
| rowspan="2" |Units in which the moving origin position is given
 
| rowspan="2" |Units in which the moving origin position is given
 
|Meters
 
|Meters
 
|The units are meters
 
|The units are meters
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Cells
 
|Cells
 
|The units are given as cells
 
|The units are given as cells
Line 9,884: Line 12,083:
 
|NAME
 
|NAME
 
|Name of the property.
 
|Name of the property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,891: Line 12,093:
 
|NBR_PARTIC
 
|NBR_PARTIC
 
|Number of Particles in each emission.
 
|Number of Particles in each emission.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,898: Line 12,103:
 
|NOWQM
 
|NOWQM
 
|To compute age without running moduleWQM.
 
|To compute age without running moduleWQM.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,905: Line 12,113:
 
|OLD
 
|OLD
 
|If the computation of this origin is continued from a previous run
 
|If the computation of this origin is continued from a previous run
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,912: Line 12,123:
 
|ORIGIN_NAME
 
|ORIGIN_NAME
 
|Name of the Origin. Origin Names must be unic.
 
|Name of the Origin. Origin Names must be unic.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |OUTPUT_CONC
 
| rowspan="2" |OUTPUT_CONC
 
| rowspan="2" |Output Integration Type
 
| rowspan="2" |Output Integration Type
 
|1
 
|1
 
|Uses maximum values for integration
 
|Uses maximum values for integration
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|2
 
|2
 
|Uses average values for integration
 
|Uses average values for integration
Line 9,931: Line 12,146:
 
|OUTPUT_MAX_TRACER
 
|OUTPUT_MAX_TRACER
 
|Checks if the users wants to output the maximum tracer concentration in each cell
 
|Checks if the users wants to output the maximum tracer concentration in each cell
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,938: Line 12,156:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Output Time
 
|Output Time
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,945: Line 12,166:
 
|OVERLAY_VELOCITY
 
|OVERLAY_VELOCITY
 
|Checks if the user wants to add an aditional velocity to the particles
 
|Checks if the user wants to add an aditional velocity to the particles
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,952: Line 12,176:
 
|PARTIC_BOX
 
|PARTIC_BOX
 
|Link to the data file which contains the definition of the boxes used for particle emission
 
|Link to the data file which contains the definition of the boxes used for particle emission
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,959: Line 12,186:
 
|PARTITION_COEF_SED
 
|PARTITION_COEF_SED
 
|Partition coefficent in the sediment.
 
|Partition coefficent in the sediment.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,966: Line 12,196:
 
|PARTITION_COEF_WATER
 
|PARTITION_COEF_WATER
 
|Partition coefficient in the water column.
 
|Partition coefficient in the water column.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,973: Line 12,206:
 
|PARTITION_COUPLE_SED
 
|PARTITION_COUPLE_SED
 
|Concentration of the dissolved phase in the intersticial water. The dissolved phase is admitted with a constant concentration.
 
|Concentration of the dissolved phase in the intersticial water. The dissolved phase is admitted with a constant concentration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,981: Line 12,217:
 
|Concentration of the dissolved phase. The dissolved phase is admitted with a constant  
 
|Concentration of the dissolved phase. The dissolved phase is admitted with a constant  
 
concentration
 
concentration
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,988: Line 12,227:
 
|PARTITION_RATE_SED
 
|PARTITION_RATE_SED
 
|Rate of transfer between the two phases.
 
|Rate of transfer between the two phases.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 9,995: Line 12,237:
 
|PARTITION_RATE_WATER
 
|PARTITION_RATE_WATER
 
|Rate of transfer between the two phases.
 
|Rate of transfer between the two phases.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,003: Line 12,248:
 
|Checks if the tracers has two phases  
 
|Checks if the tracers has two phases  
 
(adsorbe and dissolved) in the sediment
 
(adsorbe and dissolved) in the sediment
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,011: Line 12,259:
 
|Checks if the tracers has two phases  
 
|Checks if the tracers has two phases  
 
(adsorbe and dissolved) in the water column.
 
(adsorbe and dissolved) in the water column.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,018: Line 12,269:
 
|POINT_VOLUME
 
|POINT_VOLUME
 
|Volume of instantanous emission
 
|Volume of instantanous emission
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,025: Line 12,279:
 
|POSITION_CELLS
 
|POSITION_CELLS
 
|X and Y Position of the origin in grid cells.
 
|X and Y Position of the origin in grid cells.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,032: Line 12,289:
 
|POSITION_METERS
 
|POSITION_METERS
 
|X and Y Position of the origin in meters.
 
|X and Y Position of the origin in meters.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,039: Line 12,299:
 
|RESTART_FILE_OUTPUT_TIME
 
|RESTART_FILE_OUTPUT_TIME
 
|Output Time to write restart files
 
|Output Time to write restart files
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,046: Line 12,309:
 
|RESTART_FILE_OVERWRITE
 
|RESTART_FILE_OVERWRITE
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,053: Line 12,319:
 
|SED_VELOCITY
 
|SED_VELOCITY
 
|Sedimentation Velocity.
 
|Sedimentation Velocity.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |SEDIMENTATION
 
| rowspan="2" |SEDIMENTATION
 
| rowspan="2" |Sedimentation type.
 
| rowspan="2" |Sedimentation type.
 
|Imposed
 
|Imposed
 
|
 
|
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Stokes
 
|Stokes
 
|
 
|
Line 10,072: Line 12,342:
 
|SPLIT_PART
 
|SPLIT_PART
 
|Split big particles.
 
|Split big particles.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,079: Line 12,352:
 
|START_PARTIC_EMIT
 
|START_PARTIC_EMIT
 
|The Start Time of the continuous emission. By default is equal to the model start time.
 
|The Start Time of the continuous emission. By default is equal to the model start time.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,086: Line 12,362:
 
|STATISTICS
 
|STATISTICS
 
|Wheter to calculate or not the statistic.
 
|Wheter to calculate or not the statistic.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,093: Line 12,372:
 
|STATISTICS_FILE
 
|STATISTICS_FILE
 
|File name with the statistics definition.
 
|File name with the statistics definition.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,100: Line 12,382:
 
|STATISTICS_LAG
 
|STATISTICS_LAG
 
|Do a frequency analysis tracer by tracer.
 
|Do a frequency analysis tracer by tracer.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,107: Line 12,392:
 
|STOP_PARTIC_EMIT
 
|STOP_PARTIC_EMIT
 
|The Stop Time of the continuous emission. By default is equal to the model end time.
 
|The Stop Time of the continuous emission. By default is equal to the model end time.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,114: Line 12,402:
 
|T90
 
|T90
 
|Coliform Decay rate.
 
|Coliform Decay rate.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |T90_VAR_METHOD_1
 
| rowspan="2" |T90_VAR_METHOD_1
 
| rowspan="2" |Method to compute T90 function.
 
| rowspan="2" |Method to compute T90 function.
 
|1
 
|1
 
|Fecal decay according to Canteras ''et al.'' (1995)
 
|Fecal decay according to Canteras ''et al.'' (1995)
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|2
 
|2
 
|Fecal decay according to Chapra (1997)
 
|Fecal decay according to Chapra (1997)
Line 10,133: Line 12,424:
 
|T90_VARIABLE
 
|T90_VARIABLE
 
|Check if the user wants to compute T90 function of ambient properties: salinity,temperature,light.
 
|Check if the user wants to compute T90 function of ambient properties: salinity,temperature,light.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,140: Line 12,434:
 
|TAU_DEP
 
|TAU_DEP
 
|Critical shear stress of deposition.
 
|Critical shear stress of deposition.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,147: Line 12,444:
 
|TAU_ERO
 
|TAU_ERO
 
|Critical shear stress of erosion.
 
|Critical shear stress of erosion.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,154: Line 12,454:
 
|THEORIC_AREA
 
|THEORIC_AREA
 
|Uses Theoric Area for Oil Processes.
 
|Uses Theoric Area for Oil Processes.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,161: Line 12,464:
 
|THICKNESS_METERS
 
|THICKNESS_METERS
 
|The initial thickness of the particles. (For floating particle only). (Used to calculate the area if the emission is accident and the total number of particles if the emission is box)
 
|The initial thickness of the particles. (For floating particle only). (Used to calculate the area if the emission is accident and the total number of particles if the emission is box)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,168: Line 12,474:
 
|TIME_DECAY
 
|TIME_DECAY
 
|Decay time is used to compute a relxation term that makes the critical shear stress of erosion tend to the average tracer erosion rate of the cell where the tracer is deposited.
 
|Decay time is used to compute a relxation term that makes the critical shear stress of erosion tend to the average tracer erosion rate of the cell where the tracer is deposited.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,175: Line 12,484:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Checks if the user wants to write time series of the particle properties
 
|Checks if the user wants to write time series of the particle properties
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,182: Line 12,494:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Gets the position of the water points in the Map Module.
 
|Gets the position of the water points in the Map Module.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Lagrangian
+
| rowspan="2" |Lagrangian
 
| rowspan="2" |TURB_V
 
| rowspan="2" |TURB_V
 
| rowspan="2" |Vertical turbulence parameterization
 
| rowspan="2" |Vertical turbulence parameterization
 
|Constant
 
|Constant
 
|Constant Parameterization
 
|Constant Parameterization
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Profile
 
|Profile
 
|Parameterization based on the velocity profile
 
|Parameterization based on the velocity profile
Line 10,202: Line 12,518:
 
|Time needed for a particle to double volume.
 
|Time needed for a particle to double volume.
 
Turns particles volume variation on.
 
Turns particles volume variation on.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,209: Line 12,528:
 
|UNITS
 
|UNITS
 
|Units of the property.
 
|Units of the property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,216: Line 12,538:
 
|VARVELH
 
|VARVELH
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,223: Line 12,548:
 
|VARVELHX
 
|VARVELHX
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity  UStandardDeviation = VarVelHX * Vel + VarVelH
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity  UStandardDeviation = VarVelHX * Vel + VarVelH
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,230: Line 12,558:
 
|VARVELV
 
|VARVELV
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,237: Line 12,568:
 
|VARVELVX
 
|VARVELVX
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
 
|Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,243: Line 12,577:
 
|Lagrangian
 
|Lagrangian
 
|VISCCINREF
 
|VISCCINREF
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,253: Line 12,590:
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Water
+
|
−
|Lagrangian
+
|
 +
|-
 +
| rowspan="2" |Water
 +
| rowspan="2" |Lagrangian
 
| rowspan="2" |VOLUME_INCREASE
 
| rowspan="2" |VOLUME_INCREASE
 
| rowspan="2" |How volume increase is calculated
 
| rowspan="2" |How volume increase is calculated
 
|Double
 
|Double
 
|The doublication occur after the time given by TVOL200
 
|The doublication occur after the time given by TVOL200
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Lagrangian
 
 
|Velocity
 
|Velocity
 
|The doublication occur after the time given by TVOL200, but also depends on the local velocity
 
|The doublication occur after the time given by TVOL200, but also depends on the local velocity
Line 10,270: Line 12,611:
 
|WINDCOEF
 
|WINDCOEF
 
|Wind transfer Coefficient
 
|Wind transfer Coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,277: Line 12,621:
 
|WINDXY
 
|WINDXY
 
|If this keyword is defined than the wind velocity defined in the atmosphere module is override and the wind use by the tracers is this one
 
|If this keyword is defined than the wind velocity defined in the atmosphere module is override and the wind use by the tracers is this one
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,284: Line 12,631:
 
|WQM_DATA_FILE
 
|WQM_DATA_FILE
 
|Location of the File defining the Water Quality configuration.
 
|Location of the File defining the Water Quality configuration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,301: Line 12,651:
 
! scope="col" |Units
 
! scope="col" |Units
 
! scope="col" |Type
 
! scope="col" |Type
−
 
 
|-
 
|-
 
|Water
 
|Water
Line 10,327: Line 12,676:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleOil.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleOil.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 10,335: Line 12,683:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 10,340: Line 12,691:
 
|API
 
|API
 
|American Petroleum Institute (API) Gravity
 
|American Petroleum Institute (API) Gravity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,347: Line 12,701:
 
|ASPHALTENECONTENT
 
|ASPHALTENECONTENT
 
|Asphaltene Content
 
|Asphaltene Content
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,354: Line 12,711:
 
|CEMULS
 
|CEMULS
 
|Emulsification Constant ((% of evaporated oil before emulsification brgins)
 
|Emulsification Constant ((% of evaporated oil before emulsification brgins)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,361: Line 12,721:
 
|CPDISTEXP
 
|CPDISTEXP
 
|Cumulative Volume Fraction of Oil Distilled
 
|Cumulative Volume Fraction of Oil Distilled
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Oil
+
| rowspan="2" |Oil
 
| rowspan="2" |DISPERSIONMETHOD
 
| rowspan="2" |DISPERSIONMETHOD
 
| rowspan="2" |Method for Dispersion
 
| rowspan="2" |Method for Dispersion
 
|Delvigne
 
|Delvigne
 
|Dispersion parameterized with Delvigne formulation
 
|Dispersion parameterized with Delvigne formulation
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|Mackay
 
|Mackay
 
|Dispersion parameterized with Mackay formulation
 
|Dispersion parameterized with Mackay formulation
Line 10,380: Line 12,744:
 
|DT_OIL_INTPROCESSES
 
|DT_OIL_INTPROCESSES
 
|Time Step used in computation of oil internal processes
 
|Time Step used in computation of oil internal processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,387: Line 12,754:
 
|EFFICIENCY
 
|EFFICIENCY
 
|% of Area sprayed effectively dispersed
 
|% of Area sprayed effectively dispersed
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Oil
+
| rowspan="2" |Oil
 
| rowspan="2" |EMULSIFICATIONMETHOD
 
| rowspan="2" |EMULSIFICATIONMETHOD
 
| rowspan="2" |Method for Emulsification
 
| rowspan="2" |Method for Emulsification
 
|Mackay
 
|Mackay
 
|Emulsification parameterized following Mackay formulation
 
|Emulsification parameterized following Mackay formulation
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|Rasmussen
 
|Rasmussen
 
|Emulsification parameterized following Rasmussen formulation
 
|Emulsification parameterized following Rasmussen formulation
Line 10,406: Line 12,777:
 
|EmulsParameter
 
|EmulsParameter
 
|Water Uptake Parameter
 
|Water Uptake Parameter
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,413: Line 12,787:
 
|END_CHEM_DISPERSION
 
|END_CHEM_DISPERSION
 
|Ending Time of Dispersant Application
 
|Ending Time of Dispersant Application
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,420: Line 12,797:
 
|END_MEC_CLEANUP
 
|END_MEC_CLEANUP
 
|Ending Time of Mechanical Cleanup Operation
 
|Ending Time of Mechanical Cleanup Operation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Oil
+
| rowspan="3" |Oil
 
| rowspan="3" |EVAPORATIONMETHOD
 
| rowspan="3" |EVAPORATIONMETHOD
 
| rowspan="3" |Method for Evaporation
 
| rowspan="3" |Method for Evaporation
 
|EvaporativeExposure
 
|EvaporativeExposure
 
|Evaporation computed with evaporative exposure method
 
|Evaporation computed with evaporative exposure method
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|Fingas
 
|Fingas
 
|Evaporation computed with Fingas formulations
 
|Evaporation computed with Fingas formulations
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|PseudoComponents
 
|PseudoComponents
 
|Evaporation computed with pseudocomponents method
 
|Evaporation computed with pseudocomponents method
Line 10,444: Line 12,823:
 
|FINGAS_EVAP_CONST1
 
|FINGAS_EVAP_CONST1
 
|Fingas Empirical Constant 1 (Necessary If Fingas_Evap_Emp_Data = 1)
 
|Fingas Empirical Constant 1 (Necessary If Fingas_Evap_Emp_Data = 1)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,451: Line 12,833:
 
|FINGAS_EVAP_CONST2
 
|FINGAS_EVAP_CONST2
 
|Fingas Empirical Constant 2 (Necessary If Fingas_Evap_Emp_Data = 1)
 
|Fingas Empirical Constant 2 (Necessary If Fingas_Evap_Emp_Data = 1)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,458: Line 12,843:
 
|FINGAS_EVAP_EMP_DATA
 
|FINGAS_EVAP_EMP_DATA
 
|Knowledge of Empirical Data for Evaporation
 
|Knowledge of Empirical Data for Evaporation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Oil
+
| rowspan="2" |Oil
 
| rowspan="2" |FINGAS_EVAP_EQTYPE
 
| rowspan="2" |FINGAS_EVAP_EQTYPE
 
| rowspan="2" |Evaporation Equation Type
 
| rowspan="2" |Evaporation Equation Type
 
|Logarithmic
 
|Logarithmic
 
|Logarithmic Equation Type for Evaporation
 
|Logarithmic Equation Type for Evaporation
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|SquareRoot
 
|SquareRoot
 
|Square Root Equation Type for Evaporation
 
|Square Root Equation Type for Evaporation
Line 10,477: Line 12,866:
 
|MAXVWATERCONTENT
 
|MAXVWATERCONTENT
 
|Maximum Volume Water Content
 
|Maximum Volume Water Content
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,484: Line 12,876:
 
|NBRDISTCUTS
 
|NBRDISTCUTS
 
|Number of Distillation Cuts
 
|Number of Distillation Cuts
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,491: Line 12,886:
 
|OIL_CHEM_DISPERSION
 
|OIL_CHEM_DISPERSION
 
|Computes Chemical Dispersants Application
 
|Computes Chemical Dispersants Application
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,498: Line 12,896:
 
|OIL_DISPERSION
 
|OIL_DISPERSION
 
|Computes Oil Dispersion Process
 
|Computes Oil Dispersion Process
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,505: Line 12,906:
 
|OIL_DISSOLUTION
 
|OIL_DISSOLUTION
 
|Computes Oil Dissolution Process
 
|Computes Oil Dissolution Process
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,512: Line 12,916:
 
|OIL_EMULSIFICATION
 
|OIL_EMULSIFICATION
 
|Computes oil emulsification process
 
|Computes oil emulsification process
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,519: Line 12,926:
 
|OIL_EVAPORATION
 
|OIL_EVAPORATION
 
|Computes Oil Evaporation Process
 
|Computes Oil Evaporation Process
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,526: Line 12,936:
 
|OIL_MEC_CLEANUP
 
|OIL_MEC_CLEANUP
 
|Computes Mechanical Cleanup Operation
 
|Computes Mechanical Cleanup Operation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,533: Line 12,946:
 
|OIL_SEDIMENTATION
 
|OIL_SEDIMENTATION
 
|Computes Oil Sedimentation Process
 
|Computes Oil Sedimentation Process
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,540: Line 12,956:
 
|OIL_SPREADING
 
|OIL_SPREADING
 
|Computes Oil Spreading Process
 
|Computes Oil Spreading Process
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,547: Line 12,966:
 
|OIL_TIMESERIE
 
|OIL_TIMESERIE
 
|Name of the Output results file
 
|Name of the Output results file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Oil
+
| rowspan="2" |Oil
 
| rowspan="2" |OILTYPE
 
| rowspan="2" |OILTYPE
 
| rowspan="2" |Oil Type
 
| rowspan="2" |Oil Type
 
|Crude
 
|Crude
 
|Crude Oil
 
|Crude Oil
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|Refined
 
|Refined
 
|Refined oil
 
|Refined oil
Line 10,566: Line 12,989:
 
|OWINTERFACIALTENSION
 
|OWINTERFACIALTENSION
 
|Oil-Water Interfacial Tension
 
|Oil-Water Interfacial Tension
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,573: Line 12,999:
 
|P_AREA_SPRAYED
 
|P_AREA_SPRAYED
 
|% of Spill Area sprayed whit dispersant
 
|% of Spill Area sprayed whit dispersant
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,580: Line 13,009:
 
|PERC_MASSDIST180
 
|PERC_MASSDIST180
 
|%(Wheight) of Oil Evaporated until 180ºC (Necessary If Fingas_Evap_Emp_Data = 0)
 
|%(Wheight) of Oil Evaporated until 180ºC (Necessary If Fingas_Evap_Emp_Data = 0)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,587: Line 13,019:
 
|POURPOINT
 
|POURPOINT
 
|Pour Point
 
|Pour Point
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,596: Line 13,031:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Water
 
| Water
 
|Oil
 
|Oil
 
|RECOVERY_DATAFORM
 
|RECOVERY_DATAFORM
 
|DataForm of emulsion recovered
 
|DataForm of emulsion recovered
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|Oil
+
| rowspan="2" |Oil
 
| rowspan="2" |SPREADINGMETHOD
 
| rowspan="2" |SPREADINGMETHOD
 
| rowspan="2" |Method for Spreading
 
| rowspan="2" |Method for Spreading
 
|Fay
 
|Fay
 
|Mechanical spreading simply based on Fay theory
 
|Mechanical spreading simply based on Fay theory
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|Oil
 
 
|ThicknessGradient
 
|ThicknessGradient
 
|Oil mechanical spreading based on thickness gradients, parameterised with fay theory
 
|Oil mechanical spreading based on thickness gradients, parameterised with fay theory
Line 10,620: Line 13,062:
 
|START_CHEM_DISPERSION
 
|START_CHEM_DISPERSION
 
|Starting Time of Dispersant Application
 
|Starting Time of Dispersant Application
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,627: Line 13,072:
 
|START_MEC_CLEANUP
 
|START_MEC_CLEANUP
 
|Starting Time of Mechanical Cleanup Operation
 
|Starting Time of Mechanical Cleanup Operation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,634: Line 13,082:
 
|TDISTEXP
 
|TDISTEXP
 
|Vapour Temperature of Distillate
 
|Vapour Temperature of Distillate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,641: Line 13,092:
 
|TEMPVISCREF
 
|TEMPVISCREF
 
|Temperature of Reference Viscosity
 
|Temperature of Reference Viscosity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,648: Line 13,102:
 
|USERCOEFVELMANCHA
 
|USERCOEFVELMANCHA
 
|Empirical Thickness Gradient's Spreading Velocity Coefficient
 
|Empirical Thickness Gradient's Spreading Velocity Coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,655: Line 13,112:
 
|VISCCINREF
 
|VISCCINREF
 
|Reference Cinematic Viscosity
 
|Reference Cinematic Viscosity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,662: Line 13,122:
 
|VISCREF
 
|VISCREF
 
|Reference Dynamic Viscosity
 
|Reference Dynamic Viscosity
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,669: Line 13,132:
 
|WAXCONTENT
 
|WAXCONTENT
 
|Wax Content
 
|Wax Content
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,676: Line 13,142:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSand.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSand.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 10,684: Line 13,149:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 10,689: Line 13,157:
 
|BATHYM_EVOLUTION
 
|BATHYM_EVOLUTION
 
|it´s a conditional keyword: check if the user wants to let the bathymetry evolve due to sand transport
 
|it´s a conditional keyword: check if the user wants to let the bathymetry evolve due to sand transport
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,696: Line 13,167:
 
|BATIM_DT
 
|BATIM_DT
 
|The time step of the BATIM evolution
 
|The time step of the BATIM evolution
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,703: Line 13,177:
 
|BOUNDARY
 
|BOUNDARY
 
|check what type off boundary condition the user wants: 1 -> NullGradient, 2 -> Cyclic
 
|check what type off boundary condition the user wants: 1 -> NullGradient, 2 -> Cyclic
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,710: Line 13,187:
 
|BOX_FILENAME
 
|BOX_FILENAME
 
|path to the file where the boxes are defined
 
|path to the file where the boxes are defined
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,717: Line 13,197:
 
|BOXFLUXES
 
|BOXFLUXES
 
|It´s a conditional keyword to compute fluxes between boxes
 
|It´s a conditional keyword to compute fluxes between boxes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,724: Line 13,207:
 
|CLASS_ID
 
|CLASS_ID
 
|??
 
|??
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,731: Line 13,217:
 
|CLASS_NAME
 
|CLASS_NAME
 
|??
 
|??
−
 
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,739: Line 13,227:
 
|CLASSES_NUMBER
 
|CLASSES_NUMBER
 
|The number of sand classes the user wants to define
 
|The number of sand classes the user wants to define
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,746: Line 13,237:
 
|CRITICAL_SLOP
 
|CRITICAL_SLOP
 
|slope above which there is lateral erosion.
 
|slope above which there is lateral erosion.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,753: Line 13,247:
 
|DENS_SAND
 
|DENS_SAND
 
|Sand density
 
|Sand density
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,760: Line 13,257:
 
|DISCHARGES
 
|DISCHARGES
 
|??
 
|??
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,766: Line 13,266:
 
|Sand
 
|Sand
 
|FILTER_RADIUS
 
|FILTER_RADIUS
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,774: Line 13,277:
 
|FILTER_SCHEME
 
|FILTER_SCHEME
 
|the keyword can be equal to NO FILTER or MODIFY LAX.  
 
|the keyword can be equal to NO FILTER or MODIFY LAX.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,781: Line 13,287:
 
|FLUX_SLOP
 
|FLUX_SLOP
 
|??
 
|??
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,788: Line 13,297:
 
|OLD
 
|OLD
 
|it´s a conditional keyword: check if the user wants to start from the final condition of a previous run  
 
|it´s a conditional keyword: check if the user wants to start from the final condition of a previous run  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,795: Line 13,307:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|output time step
 
|output time step
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,802: Line 13,317:
 
|POROSITY
 
|POROSITY
 
|porosity of the sediments
 
|porosity of the sediments
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,809: Line 13,327:
 
|SAND_DT
 
|SAND_DT
 
|The time step of the SAND evolution
 
|The time step of the SAND evolution
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,816: Line 13,337:
 
|SAND_MIN
 
|SAND_MIN
 
|The minimum sand layer thickness
 
|The minimum sand layer thickness
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,823: Line 13,347:
 
|SMOOTH_SLOP
 
|SMOOTH_SLOP
 
|it´s a conditional keyword: check if the user wants to compute transport in strong slopes
 
|it´s a conditional keyword: check if the user wants to compute transport in strong slopes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,830: Line 13,357:
 
|TAU_MAX
 
|TAU_MAX
 
|the maximum bottom shear stress
 
|the maximum bottom shear stress
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,837: Line 13,367:
 
|TIME_SERIE
 
|TIME_SERIE
 
|it´s a conditional keyword: checks out if the user pretends to write a time serie for the transport fluxes
 
|it´s a conditional keyword: checks out if the user pretends to write a time serie for the transport fluxes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,844: Line 13,377:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|path to the file where the boxes are defined
 
|path to the file where the boxes are defined
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,851: Line 13,387:
 
|TRANSPORT_FACTOR
 
|TRANSPORT_FACTOR
 
|it´s a factor to amplify the transport
 
|it´s a factor to amplify the transport
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,858: Line 13,397:
 
|TRANSPORT_METHOD
 
|TRANSPORT_METHOD
 
|Methodology use to compute the sand transport
 
|Methodology use to compute the sand transport
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|}
 
|}
 +
 
=== Module SedimentProperties===
 
=== Module SedimentProperties===
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSedimentProperties.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleSedimentProperties.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 10,872: Line 13,414:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 10,877: Line 13,422:
 
|ADVECTION_DIFFUSION
 
|ADVECTION_DIFFUSION
 
|Compute property advection-diffusion
 
|Compute property advection-diffusion
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,884: Line 13,432:
 
|BIOTURBATION
 
|BIOTURBATION
 
|Compute bioturbation processes
 
|Compute bioturbation processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,891: Line 13,442:
 
|BIOTURBATION_COEF
 
|BIOTURBATION_COEF
 
|Bioturbation diffusion coefficient  
 
|Bioturbation diffusion coefficient  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,898: Line 13,452:
 
|BIOTURBATION_DECAY_COEF
 
|BIOTURBATION_DECAY_COEF
 
|Decay factor to compute decay of bioturbation effect
 
|Decay factor to compute decay of bioturbation effect
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,905: Line 13,462:
 
|BIOTURBATION_DEPTH
 
|BIOTURBATION_DEPTH
 
|Depth till which bioturbation diffusion is constant (m)
 
|Depth till which bioturbation diffusion is constant (m)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,912: Line 13,472:
 
|BOX_TIME_SERIE
 
|BOX_TIME_SERIE
 
|Ouputs results in box time series
 
|Ouputs results in box time series
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,919: Line 13,482:
 
|BOXFLUXES
 
|BOXFLUXES
 
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.  
 
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,926: Line 13,492:
 
|DESCRIPTION
 
|DESCRIPTION
 
|Brief description of the property
 
|Brief description of the property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|SedimentProperties
+
| rowspan="2" |SedimentProperties
 
| rowspan="2" |DIFFUSION_METHOD
 
| rowspan="2" |DIFFUSION_METHOD
 
| rowspan="2" |Method to compute diffusion coefficient correction for the sediments
 
| rowspan="2" |Method to compute diffusion coefficient correction for the sediments
 
|1
 
|1
 
|Berner, 1980
 
|Berner, 1980
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|SedimentProperties
 
 
|2
 
|2
 
|Soetaert, 1996
 
|Soetaert, 1996
Line 10,945: Line 13,515:
 
|IS_COEF
 
|IS_COEF
 
|Conversion factor to I.S. units
 
|Conversion factor to I.S. units
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,952: Line 13,525:
 
|MIN_VALUE
 
|MIN_VALUE
 
|Minimum allowed value of property concentration  
 
|Minimum allowed value of property concentration  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,959: Line 13,535:
 
|MOLECULAR_DIFF_COEF
 
|MOLECULAR_DIFF_COEF
 
|Infinite dilution molecular diffusion coefficient
 
|Infinite dilution molecular diffusion coefficient
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,966: Line 13,545:
 
|NAME
 
|NAME
 
|Property name
 
|Property name
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,973: Line 13,555:
 
|OLD
 
|OLD
 
|Initialization from previous run (overrides FillMatrix)
 
|Initialization from previous run (overrides FillMatrix)
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,980: Line 13,565:
 
|OUTPUT_HDF
 
|OUTPUT_HDF
 
|Ouputs results in HDF5 format
 
|Ouputs results in HDF5 format
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,987: Line 13,575:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 10,994: Line 13,585:
 
|PARTICULATE
 
|PARTICULATE
 
|Property physical state: 0 - Dissolved ; 1 - Particulate
 
|Property physical state: 0 - Dissolved ; 1 - Particulate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,001: Line 13,595:
 
|PARTITION
 
|PARTITION
 
|Compute partition between dissolved-particulate phases
 
|Compute partition between dissolved-particulate phases
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,008: Line 13,605:
 
|PARTITION_COUPLE
 
|PARTITION_COUPLE
 
|Name of the property (oposite phase) to compute partition
 
|Name of the property (oposite phase) to compute partition
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,015: Line 13,615:
 
|SEDIMENT_QUALITY
 
|SEDIMENT_QUALITY
 
|Compute sediment quality processes
 
|Compute sediment quality processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,022: Line 13,625:
 
|SURFACE_FLUXES
 
|SURFACE_FLUXES
 
|Compute fluxes at the sediment surface
 
|Compute fluxes at the sediment surface
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,029: Line 13,635:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Output time series for sediment property
 
|Output time series for sediment property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,036: Line 13,645:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to time serie locations file
 
|Path to time serie locations file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,043: Line 13,655:
 
|UNITS
 
|UNITS
 
|Property units
 
|Property units
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,050: Line 13,665:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbine.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbine.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 11,081: Line 13,695:
 
|
 
|
 
|
 
|
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,091: Line 13,705:
 
|
 
|
 
|
 
|
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,101: Line 13,715:
 
|
 
|
 
|m
 
|m
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,111: Line 13,725:
 
|
 
|
 
|m
 
|m
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,121: Line 13,735:
 
|0
 
|0
 
|m/s
 
|m/s
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,131: Line 13,745:
 
|
 
|
 
|
 
|
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,141: Line 13,755:
 
|
 
|
 
|
 
|
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
 
|Turbine
 
|Turbine
 
|TIMESERIE
 
|TIMESERIE
−
|Activates or not the timeserie module and prints the output data of the turbine
+
|Activates the timeserie module and prints the output data of the turbine
 
|0/1
 
|0/1
−
|1: activates the ouput data; 0: no output data
+
|activates the ouput data
 
|
 
|
 
|
 
|
Line 11,161: Line 13,775:
 
|10
 
|10
 
|m/s
 
|m/s
−
|
+
|Real
 
|-
 
|-
 
| Water
 
| Water
Line 11,178: Line 13,792:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbulence.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleTurbulence.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 11,186: Line 13,799:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
 
|Turbulence
 
|Turbulence
−
|Background_Viscosity
+
|BACKGROUND_VISCOSITY
 
|Background viscosity/diffusivity.  
 
|Background viscosity/diffusivity.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,198: Line 13,817:
 
|CONST_MIXING_LENGTH_HORIZONTAL
 
|CONST_MIXING_LENGTH_HORIZONTAL
 
|Default horizontal mixing length. Used to compute the random trajectory of particle (Lagrangian Module
 
|Default horizontal mixing length. Used to compute the random trajectory of particle (Lagrangian Module
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,205: Line 13,827:
 
|CONTINUOUS
 
|CONTINUOUS
 
|Check if the user wants to perform a simulation startinf from a previous run (1) or not (0).
 
|Check if the user wants to perform a simulation startinf from a previous run (1) or not (0).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,212: Line 13,837:
 
|DT_OUTPUT_TIME
 
|DT_OUTPUT_TIME
 
|Time interval for time serie.
 
|Time interval for time serie.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,219: Line 13,847:
 
|HORCON
 
|HORCON
 
|Smaagorinsky coefficient. Used only if MODVISH is "smagorinsky".
 
|Smaagorinsky coefficient. Used only if MODVISH is "smagorinsky".
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,226: Line 13,857:
 
|HREF_VIS
 
|HREF_VIS
 
|Water column reference thickness used in the for the option MODVISH "estuary".
 
|Water column reference thickness used in the for the option MODVISH "estuary".
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,233: Line 13,867:
 
|MIXLENGTH_MAX
 
|MIXLENGTH_MAX
 
|Maximum allowed mixing length. Parameter used in the Nihoul and Leendertse parameterization.
 
|Maximum allowed mixing length. Parameter used in the Nihoul and Leendertse parameterization.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,240: Line 13,877:
 
|MIXLENGTH_V
 
|MIXLENGTH_V
 
|Default vertical mixing length. Used to compute the random trajectory of particle (Lagrangian Module).
 
|Default vertical mixing length. Used to compute the random trajectory of particle (Lagrangian Module).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,247: Line 13,887:
 
|MLD
 
|MLD
 
|Checks out if the user pretends to compute the mixed layer length (1) or not (0).
 
|Checks out if the user pretends to compute the mixed layer length (1) or not (0).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,254: Line 13,897:
 
|MLD_BOTTOM
 
|MLD_BOTTOM
 
|Checks out if the user pretends to compute the bottom mixed layer length (1) or not (0).  
 
|Checks out if the user pretends to compute the bottom mixed layer length (1) or not (0).  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|Turbulence
+
| rowspan="3" |Turbulence
 
| rowspan="3" |MLD_Method
 
| rowspan="3" |MLD_Method
 
| rowspan="3" |
 
| rowspan="3" |
 
|1
 
|1
 
|Turbulent kinetic energy (TKE) inferior to a predefined minimum.
 
|Turbulent kinetic energy (TKE) inferior to a predefined minimum.
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|2
 
|2
 
|Richardson number (Ri) superior to a critical value.
 
|Richardson number (Ri) superior to a critical value.
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|3
 
|3
 
|Maximum value of Brunt-Vaisalla frequency (N)
 
|Maximum value of Brunt-Vaisalla frequency (N)
 
|-
 
|-
−
| Water
+
| rowspan="7" |Water
−
|Turbulence
+
| rowspan="7" |Turbulence
 
| rowspan="7" |MODTURB
 
| rowspan="7" |MODTURB
 
| rowspan="7" |Vertical eddy viscosity model
 
| rowspan="7" |Vertical eddy viscosity model
 
|backhaus
 
|backhaus
 
|Uses Backhaus turbulence scheme.
 
|Uses Backhaus turbulence scheme.
 +
| rowspan="7" |
 +
| rowspan="7" |
 +
| rowspan="7" |
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|constant
 
|constant
 
|Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing.  
 
|Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing.  
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|file2D
 
|file2D
 
|Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)  
 
|Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)  
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|leendertsee
 
|leendertsee
 
|Uses Leendertsee turbulence scheme.
 
|Uses Leendertsee turbulence scheme.
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|nihoul
 
|nihoul
 
|Uses Nihoul turbulence scheme.
 
|Uses Nihoul turbulence scheme.
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|pacanowski
 
|pacanowski
 
|Uses Pacanowski turbulence scheme.
 
|Uses Pacanowski turbulence scheme.
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|turbulence_equation
 
|turbulence_equation
 
|Uses a turbulence equation for closure. This is only to be used with GOTM module.
 
|Uses a turbulence equation for closure. This is only to be used with GOTM module.
 
|-
 
|-
−
| Water
+
| rowspan="4" |Water
−
|Turbulence
+
| rowspan="4" |Turbulence
 
| rowspan="4" |MODVISH
 
| rowspan="4" |MODVISH
 
| rowspan="4" |Horizontal eddy viscosity model.
 
| rowspan="4" |Horizontal eddy viscosity model.
 
|constant
 
|constant
 
|Constant horizontal viscosity
 
|Constant horizontal viscosity
 +
| rowspan="4" |
 +
| rowspan="4" |
 +
| rowspan="4" |
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|estuary
 
|estuary
 
|
 
|
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|file2D
 
|file2D
 
|Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
 
|Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
 
|-
 
|-
−
| Water
 
−
|Turbulence
 
 
|smagorinsky
 
|smagorinsky
 
|Smagorinsky turbulence scheme.
 
|Smagorinsky turbulence scheme.
Line 11,337: Line 13,970:
 
|NYQUIST
 
|NYQUIST
 
|Nyquist frequency used for mixing length calculation.
 
|Nyquist frequency used for mixing length calculation.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,344: Line 13,980:
 
|OUTPUT_PROFILE
 
|OUTPUT_PROFILE
 
|Perform profile outputs in HDF5
 
|Perform profile outputs in HDF5
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,353: Line 13,992:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|
 +
|-
 
| Water
 
| Water
 
|Turbulence
 
|Turbulence
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Intrevals of time between outputs.  
 
|Intrevals of time between outputs.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,365: Line 14,010:
 
|PRANDTL_0
 
|PRANDTL_0
 
|Vertical Prandtl number
 
|Vertical Prandtl number
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,372: Line 14,020:
 
|RESTART_FILE_OVERWRITE
 
|RESTART_FILE_OVERWRITE
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,379: Line 14,030:
 
|RICH_MLD
 
|RICH_MLD
 
|Ri used to compute the surface mixing length based on the Ri number.
 
|Ri used to compute the surface mixing length based on the Ri number.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,386: Line 14,040:
 
|STATISTICS_MLD
 
|STATISTICS_MLD
 
|Checks out if the user pretends to output statics for the surface mixing length (1) or not (0).
 
|Checks out if the user pretends to output statics for the surface mixing length (1) or not (0).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,393: Line 14,050:
 
|STATISTICS_MLD_FILE
 
|STATISTICS_MLD_FILE
 
|File name for output statistics of surface mixing length.
 
|File name for output statistics of surface mixing length.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,400: Line 14,060:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Checks out if the user pretends to write time series of this property (1) or not (0).
 
|Checks out if the user pretends to write time series of this property (1) or not (0).
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,407: Line 14,070:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to time serie location file
 
|Path to time serie location file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,414: Line 14,080:
 
|TKE_MLD
 
|TKE_MLD
 
|TKE limit used to compute the surface mixing length based on the TKE.
 
|TKE limit used to compute the surface mixing length based on the TKE.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,421: Line 14,090:
 
|VISCOSITY_H
 
|VISCOSITY_H
 
|Default horizontal viscosity.
 
|Default horizontal viscosity.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,428: Line 14,100:
 
|VISCOSITY_V
 
|VISCOSITY_V
 
|Default vertical viscosity.
 
|Default vertical viscosity.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,436: Line 14,111:
 
|Horizontal viscosity used as the minimum value for viscosity if MODVISH is either "estuary" or
 
|Horizontal viscosity used as the minimum value for viscosity if MODVISH is either "estuary" or
 
"smagorinsky".
 
"smagorinsky".
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,443: Line 14,121:
 
|VREF_VIS
 
|VREF_VIS
 
|Reference velocity used if MODVISH is "estuary".
 
|Reference velocity used if MODVISH is "estuary".
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,450: Line 14,131:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleWaterProperties.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleWaterProperties.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 11,458: Line 14,138:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 11,463: Line 14,146:
 
|ADV_DIF_NUM_STABILITY
 
|ADV_DIF_NUM_STABILITY
 
|Verifies advection-diffusion numerical stability for this property.
 
|Verifies advection-diffusion numerical stability for this property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="5" |Water
−
|WaterProperties
+
| rowspan="5" |WaterProperties
 
| rowspan="5" |ADV_METHOD_H
 
| rowspan="5" |ADV_METHOD_H
 
| rowspan="5" |Horizontal advection discretization.
 
| rowspan="5" |Horizontal advection discretization.
 
|1
 
|1
 
|UpwindOrder1
 
|UpwindOrder1
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|2
 
|2
 
|UpwindOrder2
 
|UpwindOrder2
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|UpwindOrder3
 
|UpwindOrder3
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|4
 
|4
 
|P2_TVD
 
|P2_TVD
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|5
 
|5
 
|CentralDif
 
|CentralDif
 
|-
 
|-
−
| Water
+
| rowspan="5" |Water
−
|WaterProperties
+
| rowspan="5" |WaterProperties
 
| rowspan="5" |ADV_METHOD_V
 
| rowspan="5" |ADV_METHOD_V
 
| rowspan="5" |Vertical advection discretization.
 
| rowspan="5" |Vertical advection discretization.
 
|1
 
|1
 
|UpwindOrder1
 
|UpwindOrder1
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties.
 
 
|2
 
|2
 
|UpwindOrder2
 
|UpwindOrder2
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|UpwindOrder3
 
|UpwindOrder3
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|4
 
|4
 
|P2_TVD
 
|P2_TVD
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|5
 
|5
 
|CentralDif
 
|CentralDif
Line 11,524: Line 14,200:
 
|ADVECTION_DIFFUSION
 
|ADVECTION_DIFFUSION
 
|Property transported by advection and diffusion.
 
|Property transported by advection and diffusion.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|WaterProperties
+
| rowspan="2" |WaterProperties
−
| rowspan="2" |ADVECTION_H_IMP_EXP
+
| rowspan="2" |ADVECTION_H_IMP_EXP
 
| rowspan="2" |Horizontal advection computed using a implicit/explicit discretization for this property.
 
| rowspan="2" |Horizontal advection computed using a implicit/explicit discretization for this property.
 
|0
 
|0
 
|Implicit discretization
 
|Implicit discretization
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|1
 
|1
 
|Explicit discretization
 
|Explicit discretization
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|WaterProperties
+
| rowspan="2" |WaterProperties
 
| rowspan="2" |ADVECTION_V_IMP_EXP
 
| rowspan="2" |ADVECTION_V_IMP_EXP
 
| rowspan="2" |Vertical advection computed using a implicit/explicit discretization for this property.
 
| rowspan="2" |Vertical advection computed using a implicit/explicit discretization for this property.
 
|0
 
|0
 
|Implicit discretization.
 
|Implicit discretization.
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|1
 
|1
 
|Explicit discretization.
 
|Explicit discretization.
Line 11,555: Line 14,236:
 
|AGE_USING_WATERPOINTS
 
|AGE_USING_WATERPOINTS
 
|Compute age using Waterpoints. If FALSE then age is computed using Openpoints.
 
|Compute age using Waterpoints. If FALSE then age is computed using Openpoints.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,561: Line 14,245:
 
|WaterProperties
 
|WaterProperties
 
|ALTITUDE
 
|ALTITUDE
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,569: Line 14,256:
 
|BOTTOM_FLUXES
 
|BOTTOM_FLUXES
 
|This property has bottom fluxes  
 
|This property has bottom fluxes  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="8" |Water
−
|WaterProperties
+
| rowspan="8" |WaterProperties
−
| rowspan="7" |BOUNDARY_CONDITION
+
| rowspan="8" |BOUNDARY_CONDITION
−
| rowspan="7" |Boundary condition for this property.
+
| rowspan="8" |Boundary condition for this property.
 
|1
 
|1
 
|MassConservation
 
|MassConservation
 +
| rowspan="8" |
 +
| rowspan="8" |
 +
| rowspan="8" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|2
 
|2
 
|ImposedValue
 
|ImposedValue
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|VerticalDiffusion
 
|VerticalDiffusion
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|4
 
|4
 
|NullGradient
 
|NullGradient
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|5
 
|5
 
|SubModel
 
|SubModel
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|6
 
|6
 
|Orlanski
 
|Orlanski
 
|-
 
|-
−
| Water
+
|7
−
|WaterProperties
+
|MassConservation + NullGradient
 +
|-
 
|8
 
|8
 
|CyclicBoundary
 
|CyclicBoundary
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|WaterProperties
+
| rowspan="2" |WaterProperties
 
| rowspan="2" |BOUNDARY_INITIALIZATION
 
| rowspan="2" |BOUNDARY_INITIALIZATION
 
| rowspan="2" |Processes considered to initialize the boundary values of this property
 
| rowspan="2" |Processes considered to initialize the boundary values of this property
 
|EXTERIOR  
 
|EXTERIOR  
 
|A value exterior to the domain is be imposed (a constant value).
 
|A value exterior to the domain is be imposed (a constant value).
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|INTERIOR  
 
|INTERIOR  
 
|Boundaries equal to the values given  
 
|Boundaries equal to the values given  
Line 11,626: Line 14,311:
 
|BOX_TIME_SERIE
 
|BOX_TIME_SERIE
 
|Checks to see if the user pretends to write a time serie inside each box for this property
 
|Checks to see if the user pretends to write a time serie inside each box for this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,633: Line 14,321:
 
|BOXFLUXES
 
|BOXFLUXES
 
|Path to the file with the boxes definitions.
 
|Path to the file with the boxes definitions.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,640: Line 14,331:
 
|CEQUALW2
 
|CEQUALW2
 
|This property has CEQUALW2 model as a sink and source
 
|This property has CEQUALW2 model as a sink and source
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,647: Line 14,341:
 
|DATA_ASSIMILATION
 
|DATA_ASSIMILATION
 
|Data assimilation scheme
 
|Data assimilation scheme
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,656: Line 14,353:
 
|0
 
|0
 
|Property value at the boundary remains constant.
 
|Property value at the boundary remains constant.
 +
|
 +
|
 +
|
 
|-
 
|-
 
| Water
 
| Water
Line 11,661: Line 14,361:
 
|DEFAULTBOUNDARY
 
|DEFAULTBOUNDARY
 
|The default value of a specific water property imposed in the open boundary
 
|The default value of a specific water property imposed in the open boundary
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="5" |Water
−
|WaterProperties
+
| rowspan="5" |WaterProperties
 
| rowspan="5" |DENSITY_METHOD
 
| rowspan="5" |DENSITY_METHOD
 
| rowspan="5" |Method to compute water density
 
| rowspan="5" |Method to compute water density
 
|1
 
|1
 
|Leendertse
 
|Leendertse
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|2
 
|2
 
|UNESCO (''in situ'' temperature)
 
|UNESCO (''in situ'' temperature)
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|Linear
 
|Linear
 
|-
 
|-
−
| Water
+
|4
−
|WaterProperties
 
−
|4
 
 
|Mellor 1996
 
|Mellor 1996
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|5
 
|5
 
|Jackett and McDougall 1995
 
|Jackett and McDougall 1995
Line 11,697: Line 14,395:
 
|
 
|
 
|
 
|
−
|-
+
|
−
| Water
 
−
|WaterProperties
 
−
|DESCRIPTION
 
−
|Rate description ex: zooplankton grazing over phytoplankton
 
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="2" |Water
−
|WaterProperties
+
| rowspan="2" |WaterProperties
 
| rowspan="2" |DIFFUSION_V_IMP_EXP
 
| rowspan="2" |DIFFUSION_V_IMP_EXP
 
| rowspan="2" |Vertical diffusion computed using a implicit/explicit discretization for this property.
 
| rowspan="2" |Vertical diffusion computed using a implicit/explicit discretization for this property.
 
|0
 
|0
 
|Implicit discretization.
 
|Implicit discretization.
 +
| rowspan="2" |
 +
| rowspan="2" |
 +
| rowspan="2" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|1
 
|1
 
|Explicit discretization.
 
|Explicit discretization.
Line 11,721: Line 14,416:
 
|DISCHARGES
 
|DISCHARGES
 
|Property is discharged.
 
|Property is discharged.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,728: Line 14,426:
 
|DISCHARGES_TRACKING
 
|DISCHARGES_TRACKING
 
|This property writes discharges as time serie
 
|This property writes discharges as time serie
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="3" |Water
−
|WaterProperties
+
| rowspan="3" |WaterProperties
 
| rowspan="3" |DOSAT_TYPE
 
| rowspan="3" |DOSAT_TYPE
 
| rowspan="3" |Method to compute dissolved oxygen saturation
 
| rowspan="3" |Method to compute dissolved oxygen saturation
 
|1
 
|1
 
|Apha
 
|Apha
 +
| rowspan="3" |
 +
| rowspan="3" |
 +
| rowspan="3" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|2
 
|2
 
|Henry
 
|Henry
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|Mortimer
 
|Mortimer
Line 11,753: Line 14,453:
 
|DT to compute this property evolution.  
 
|DT to compute this property evolution.  
 
Only defined if no advection_difusion or sink and source model chosen
 
Only defined if no advection_difusion or sink and source model chosen
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,759: Line 14,462:
 
|WaterProperties
 
|WaterProperties
 
|EMPIRIC_COEF
 
|EMPIRIC_COEF
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,767: Line 14,473:
 
|EXTINCTION_PARAMETER
 
|EXTINCTION_PARAMETER
 
|Parameter that multiplies by this property concentration to compute light extinction when SW_EXTINCTION_TYPE:6 (multiparameter option)  
 
|Parameter that multiplies by this property concentration to compute light extinction when SW_EXTINCTION_TYPE:6 (multiparameter option)  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,774: Line 14,483:
 
|FILTRATION
 
|FILTRATION
 
|Compute filtration process as a sink
 
|Compute filtration process as a sink
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,781: Line 14,493:
 
|FIRSTPROP
 
|FIRSTPROP
 
|First Property defined in a WQ rate relation
 
|First Property defined in a WQ rate relation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,788: Line 14,503:
 
|FREE_CONVECTION
 
|FREE_CONVECTION
 
|Option to mix instable density profiles  
 
|Option to mix instable density profiles  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,795: Line 14,513:
 
|INSTANT_MIXING
 
|INSTANT_MIXING
 
|This option mix instantaneously the all water column for this property
 
|This option mix instantaneously the all water column for this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,802: Line 14,523:
 
|IS_COEF
 
|IS_COEF
 
|Conversion factor between IS units and the user defined units for this property
 
|Conversion factor between IS units and the user defined units for this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,809: Line 14,533:
 
|LIFE
 
|LIFE
 
|This property has Life model as a sink and source
 
|This property has Life model as a sink and source
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,816: Line 14,543:
 
|LIGHT_EXTINCTION
 
|LIGHT_EXTINCTION
 
|Check if this property is used to compute light extinction when  SW_EXTINCTION_TYPE : 6 (multiparameter)  
 
|Check if this property is used to compute light extinction when  SW_EXTINCTION_TYPE : 6 (multiparameter)  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,823: Line 14,553:
 
|MACROALGAE  
 
|MACROALGAE  
 
|Defines if property is included in macroalgae biogeochemical processes
 
|Defines if property is included in macroalgae biogeochemical processes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,830: Line 14,563:
 
|MACROALGAE_HEIGHT
 
|MACROALGAE_HEIGHT
 
|Macroalgae reference height
 
|Macroalgae reference height
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,837: Line 14,573:
 
|MACROALGAE_MASS
 
|MACROALGAE_MASS
 
|Initial distribution of macroalgae attached to the bottom
 
|Initial distribution of macroalgae attached to the bottom
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,844: Line 14,583:
 
|MAX_VALUE
 
|MAX_VALUE
 
|Maximum allowed value of property concentration  
 
|Maximum allowed value of property concentration  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,851: Line 14,593:
 
|MIN_VALUE
 
|MIN_VALUE
 
|Mininum value of this property  
 
|Mininum value of this property  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,858: Line 14,603:
 
|MODEL
 
|MODEL
 
|Name of the biogeochemical to which the rate belongs
 
|Name of the biogeochemical to which the rate belongs
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,865: Line 14,613:
 
|NAME
 
|NAME
 
|Name of this property
 
|Name of this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,872: Line 14,623:
 
|NAME
 
|NAME
 
|Rate name ex: PhyZoo
 
|Rate name ex: PhyZoo
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,879: Line 14,633:
 
|NULLDIF
 
|NULLDIF
 
|Consider null diffusion of this property if velocities are null.
 
|Consider null diffusion of this property if velocities are null.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,886: Line 14,643:
 
|OLD
 
|OLD
 
|Check if user wants to continue the run with results of a previous run.
 
|Check if user wants to continue the run with results of a previous run.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,893: Line 14,653:
 
|OUTPUT_HDF
 
|OUTPUT_HDF
 
|Check to see if this property is to be written in the HDF file.
 
|Check to see if this property is to be written in the HDF file.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,900: Line 14,663:
 
|OUTPUT_PROFILE
 
|OUTPUT_PROFILE
 
|Perform profile outputs in HDF5 format
 
|Perform profile outputs in HDF5 format
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,907: Line 14,673:
 
|OUTPUT_TIME
 
|OUTPUT_TIME
 
|Output times for HDF output file
 
|Output times for HDF output file
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,914: Line 14,683:
 
|PARTICULATE
 
|PARTICULATE
 
|Checks if the user wants this property to be particulate
 
|Checks if the user wants this property to be particulate
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,921: Line 14,693:
 
|PARTITION
 
|PARTITION
 
|This property has partition as a sink and source
 
|This property has partition as a sink and source
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,928: Line 14,703:
 
|PARTITION_COUPLE
 
|PARTITION_COUPLE
 
|Name of property (dissolved/particulated) to couple this property
 
|Name of property (dissolved/particulated) to couple this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,934: Line 14,712:
 
|WaterProperties
 
|WaterProperties
 
|PARTITION_FRACTION
 
|PARTITION_FRACTION
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,941: Line 14,722:
 
|WaterProperties
 
|WaterProperties
 
|PARTITION_RATE
 
|PARTITION_RATE
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,949: Line 14,733:
 
|PRESSURE_CORRECTION
 
|PRESSURE_CORRECTION
 
|Check to see if Pressure correction is going to be computed.
 
|Check to see if Pressure correction is going to be computed.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,956: Line 14,743:
 
|RATIO_C_CHLA
 
|RATIO_C_CHLA
 
|Plankton Carbon/Chlorophyll Ratio  
 
|Plankton Carbon/Chlorophyll Ratio  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,963: Line 14,753:
 
|REFERENCE_DENSITY
 
|REFERENCE_DENSITY
 
|Reference water density
 
|Reference water density
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,971: Line 14,764:
 
|Specific heat reference of water. seawater in GOTM - 3985 J/kg/ºC
 
|Specific heat reference of water. seawater in GOTM - 3985 J/kg/ºC
 
Freshwater in Chapra - 4180 J/kg/ºC
 
Freshwater in Chapra - 4180 J/kg/ºC
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,978: Line 14,774:
 
|RESTART_FILE_OUTPUT_TIME
 
|RESTART_FILE_OUTPUT_TIME
 
|Output Time to write restart files
 
|Output Time to write restart files
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,985: Line 14,784:
 
|RESTART_FILE_OVERWRITE
 
|RESTART_FILE_OVERWRITE
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,992: Line 14,794:
 
|SALINITY_EFFECT
 
|SALINITY_EFFECT
 
|Compute partition coefficient between the particulate and the dissolved phase as a function of salinity, for this property
 
|Compute partition coefficient between the particulate and the dissolved phase as a function of salinity, for this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 11,999: Line 14,804:
 
|SCHMIDT_BACKGROUND_V
 
|SCHMIDT_BACKGROUND_V
 
|see SCHMIDT_COEF_V.
 
|see SCHMIDT_COEF_V.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,006: Line 14,814:
 
|SCHMIDT_COEF_V
 
|SCHMIDT_COEF_V
 
|Schmidt number for the vertical.
 
|Schmidt number for the vertical.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,013: Line 14,824:
 
|SCHMIDT_NUMBER_H
 
|SCHMIDT_NUMBER_H
 
|Schmidt number for the horizontal.  
 
|Schmidt number for the horizontal.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,020: Line 14,834:
 
|SECONDPROP
 
|SECONDPROP
 
|Second property defined in a WQ rate relation
 
|Second property defined in a WQ rate relation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,029: Line 14,846:
 
|
 
|
 
|
 
|
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|WaterProperties
 +
|SIMPLE_OUTPUT
 +
|HDF outputs include only the basic properties
 +
|0/1
 +
|Inactive/Active
 +
|1
 +
|
 +
|Boolean
 +
|-
 +
| Water
 +
|WaterProperties
 +
|SIMPLE_WINDOW_OUTPUT
 +
|HDF window outputs include only the basic properties
 +
|0/1
 +
|Inactive/Active
 +
|1
 +
|
 +
|Boolean
 
|-
 
|-
 
| Water
 
| Water
Line 12,034: Line 14,874:
 
|SMALLDEPTH_LIMIT
 
|SMALLDEPTH_LIMIT
 
|Water column thickness below which homogeneous water properties is assumed.  
 
|Water column thickness below which homogeneous water properties is assumed.  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,043: Line 14,886:
 
|2
 
|2
 
|Uses the UNESCO state equation described in Millero ''et al''. 1978
 
|Uses the UNESCO state equation described in Millero ''et al''. 1978
 +
|
 +
|
 +
|
 
|-
 
|-
 
| Water
 
| Water
Line 12,048: Line 14,894:
 
|3
 
|3
 
|Uses the referenced value
 
|Uses the referenced value
 +
|
 +
|
 +
|
 
|-
 
|-
 
| Water
 
| Water
Line 12,053: Line 14,902:
 
|STATISTICS
 
|STATISTICS
 
|Checks to see if the user pretends the statistics of this property
 
|Checks to see if the user pretends the statistics of this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,060: Line 14,912:
 
|STATISTICS_FILE
 
|STATISTICS_FILE
 
|Path to the file that has the statistics definitions
 
|Path to the file that has the statistics definitions
−
 
+
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,068: Line 14,922:
 
|SUBMODEL
 
|SUBMODEL
 
|Property is influenced by a father model
 
|Property is influenced by a father model
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,075: Line 14,932:
 
|SUBMODEL_INI
 
|SUBMODEL_INI
 
|Property is initialized as being part of a sub model
 
|Property is initialized as being part of a sub model
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,082: Line 14,942:
 
|SURFACE_FLUXES
 
|SURFACE_FLUXES
 
|This property has surface fluxes
 
|This property has surface fluxes
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,089: Line 14,952:
 
|TIME_SERIE
 
|TIME_SERIE
 
|Check to see if this property is to be written as time series.
 
|Check to see if this property is to be written as time series.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,096: Line 14,962:
 
|TIME_SERIE_LOCATION
 
|TIME_SERIE_LOCATION
 
|Path to the file that as time series definitions
 
|Path to the file that as time series definitions
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|-
 
|-
−
| Water
+
| rowspan="5" |Water
−
|WaterProperties
+
| rowspan="5" |WaterProperties
 
| rowspan="5" |TVD_LIMIT_H
 
| rowspan="5" |TVD_LIMIT_H
 
| rowspan="5" |Horizontal TVD limitation
 
| rowspan="5" |Horizontal TVD limitation
 
|1
 
|1
 
|MinMod
 
|MinMod
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|2
 
|2
 
|VanLeer
 
|VanLeer
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|Muscl
 
|Muscl
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|4
 
|4
 
|Superbee
 
|Superbee
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|5
 
|5
 
|PDM
 
|PDM
 
|-
 
|-
−
| Water
+
| rowspan="5" |Water
−
|WaterProperties
+
| rowspan="5" |WaterProperties
 
| rowspan="5" |TVD_LIMIT_V
 
| rowspan="5" |TVD_LIMIT_V
 
| rowspan="5" |Vertical TVD limitation
 
| rowspan="5" |Vertical TVD limitation
 
|1
 
|1
 
|MinMod
 
|MinMod
 +
| rowspan="5" |
 +
| rowspan="5" |
 +
| rowspan="5" |
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|2
 
|2
 
|VanLeer
 
|VanLeer
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|3
 
|3
 
|Muscl
 
|Muscl
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|4
 
|4
 
|Superbee
 
|Superbee
 
|-
 
|-
−
| Water
 
−
|WaterProperties
 
 
|5
 
|5
 
|PDM
 
|PDM
Line 12,157: Line 15,016:
 
|UNITS
 
|UNITS
 
|Units of this property
 
|Units of this property
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,164: Line 15,026:
 
|USE_SED_REF_CONC
 
|USE_SED_REF_CONC
 
|Use Reference cohesive sediment concentration method for this property Partition sink and source model
 
|Use Reference cohesive sediment concentration method for this property Partition sink and source model
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,171: Line 15,036:
 
|VERTICAL_MOVEMENT
 
|VERTICAL_MOVEMENT
 
|This property has free vertical movement.
 
|This property has free vertical movement.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,178: Line 15,046:
 
|VOLUME_RELATION_MAX
 
|VOLUME_RELATION_MAX
 
|The relation between adjacent volumes above which the advection is upwind, for this property.
 
|The relation between adjacent volumes above which the advection is upwind, for this property.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,185: Line 15,056:
 
|WARN_ON_NEGATIVE_VALUES
 
|WARN_ON_NEGATIVE_VALUES
 
|Write a warning to screen when property has negative value
 
|Write a warning to screen when property has negative value
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,192: Line 15,066:
 
|WATER_QUALITY
 
|WATER_QUALITY
 
|This property has Water Quality Model as a sink and source
 
|This property has Water Quality Model as a sink and source
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,199: Line 15,076:
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleWaves.F90 Source Code]
 
[https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDWater/ModuleWaves.F90 Source Code]
 
{| class="wikitable"
 
{| class="wikitable"
−
 
 
|-
 
|-
 
! scope="col" |Project
 
! scope="col" |Project
Line 12,207: Line 15,083:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
! scope="col" |Default Value
 +
! scope="col" |Units
 +
! scope="col" |Type
 
|-
 
|-
 
| Water
 
| Water
Line 12,214: Line 15,093:
 
   
 
   
 
if keyword value = 1 (one) computes distances according to a "graphical" method between points and land polygons. If keyword = 0 (zero) computes distances with a method based on grid.
 
if keyword value = 1 (one) computes distances according to a "graphical" method between points and land polygons. If keyword = 0 (zero) computes distances with a method based on grid.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,221: Line 15,103:
 
|RADIATION_TENSION_X
 
|RADIATION_TENSION_X
 
|Compute/read radiation stress in XX direction
 
|Compute/read radiation stress in XX direction
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,228: Line 15,113:
 
|RADIATION_TENSION_Y
 
|RADIATION_TENSION_Y
 
|Compute/read radiation stress in Y direction
 
|Compute/read radiation stress in Y direction
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,234: Line 15,122:
 
|Waves
 
|Waves
 
|REMAIN_CONSTANT
 
|REMAIN_CONSTANT
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,242: Line 15,133:
 
|WAVE_DIRECTION
 
|WAVE_DIRECTION
 
|Compute/read wave direction
 
|Compute/read wave direction
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,249: Line 15,143:
 
|WAVE_HEIGHT
 
|WAVE_HEIGHT
 
|Compute/read wave height
 
|Compute/read wave height
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,256: Line 15,153:
 
|WAVE_HEIGHT_PARAMETER
 
|WAVE_HEIGHT_PARAMETER
 
|Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave height calibration.
 
|Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave height calibration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,263: Line 15,163:
 
|WAVE_PERIOD
 
|WAVE_PERIOD
 
|Compute/read wave period
 
|Compute/read wave period
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,270: Line 15,173:
 
|WAVE_PERIOD_PARAMETER
 
|WAVE_PERIOD_PARAMETER
 
|Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave period calibration.
 
|Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave period calibration.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,279: Line 15,185:
  
 
If keyword value equals 0 (zero), WaveHeight and WavePeriod are computed as originaly (wind modulus dependent). If value equals 1 (one), computes as CEQUAL-W2 way (wind, depth and Fetch dependent).  
 
If keyword value equals 0 (zero), WaveHeight and WavePeriod are computed as originaly (wind modulus dependent). If value equals 1 (one), computes as CEQUAL-W2 way (wind, depth and Fetch dependent).  
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,286: Line 15,195:
 
|WINDROSE_DIRECTIONS
 
|WINDROSE_DIRECTIONS
 
|Number of wind directions for fetch calculation.
 
|Number of wind directions for fetch calculation.
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 12,302: Line 15,214:
 
! scope="col" |Options
 
! scope="col" |Options
 
! scope="col" |Option description
 
! scope="col" |Option description
 +
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Latest revision as of 13:20, 19 April 2023

MOHID Base 1

Module Benthos

Source Code

Keyword Keyword description Options Option description Default Value Units Type
BIOSI_DECAY_RATE Biogenic silica dissolution rate
DIATOMS Compute diatoms mortality
DIATOMS_MORTALITY Diatoms mortality rate when deposited
DIATOMS_NC_RATIO Diatoms Nitrogen/Carbon ratio
DIATOMS_PC_RATIO Diatoms Phosphorus/Carbon ratio
DIATOMS_SIC_RATIO Diatoms Silica/Carbon ratio
DT Time step to compute benthic biogeochemical processes
MIN_OXYGEN Minimum oxygen concentration for mineralization to occur
NC_RATIO Nitrogen/Carbon ratio of organic matter
NITROGEN Compute nitrogen processes
OXYGEN Compute oxygen processes
PC_RATIO Phosphorus/Carbon ratio of organic matter
PELAGIC_MODEL Pelagic model name to which Module Benthos will be coupled LifeModel
WaterQuality
PHOSPHORUS Compute phosphorus processes
PHYTO Compute phytoplankton mortality
PHYTO_MORTALITY Phytoplankton mortality rate when deposited
PHYTO_NC_RATIO Phytoplankton Nitrogen/Carbon ratio
PHYTO_PC_RATIO Phytoplankton Nitrogen/Carbon ratio
PON_DECAY_RATE Particulate organic nitrogen mineralization rate
PON_DECAY_TFACTOR Particulate Organic Nitrogen temperature influence factor in mineralization Rate
POP_DECAY_RATE Particulate organic phosphorus mineralization rate
POP_DECAY_TFACTOR Particulate Organic Phosphorus temperature influence factor in mineralization Rate
SILICA

Module CEQUALW2

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 CEQUALW2 DTSECONDS time step, in seconds, between two CEQUALW2 calls
Base 1 CEQUALW2 NAME Algae Property name as defined on Module GlobalData

Module Discharges

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 Discharges ALTERNATIVE_LOCATIONS Activates the automatic search for alternative locations, when the discharge point is not a covered point 0/1 Inactive/Active 0 Boolean
Base 1 Discharges COORD_X Longitude of the discharge in geographic coordinates Real
Base 1 Discharges COORD_Y Activates the automatic search for alternative locations, when the discharge point is not a covered point Latitude of the discharge in geographic coordinates Real
Base 1 Discharges CREST_HEIGTH Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
Base 1 Discharges DATA_BASE_FILE Definition of the data base time series file. If there is one, model assumes that the discharge is time variable
Base 1 Discharges DEFAULT_FLOW_VALUE Default flow value
Base 1 Discharges DEFAULT_VELOCITY_VALUE Default velocity associated with the discharge. Important to compute momentum fluxes
Base 1 Discharges DEFAULTVALUE Water property value
Base 1 Discharges DESCRIPTION Discharge description
Base 1 Discharges DISCHARGE_UNIFORM
Base 1 Discharges FLOW_COLUMN Column where the flow is defined in the data base time series file
Base 1 Discharges FLOW_DISTRIBUTION Chooses the hydrodynamic approximation to be solved in the momentum equation by cell
by water column
by volume
Base 1 Discharges FLOW_OVER Computes a negative discharge, function of the water level, also known as spill flow
Base 1 Discharges IGNORE_ON This keyword must be active for MOHID MPI runs 0/1 Inactive/Active 0 Boolean
Base 1 Discharges I_CELL Line where the discharge is located. When defined, a grid-based discharged is assumed Integer
Base 1 Discharges J_CELL Column where the discharge is located Integer
Base 1 Discharges K_CELL Layer where the discharge is located Integer
Base 1 Discharges NAME Discharge name
Base 1 Discharges NODE_ID ID of the discharge, when it isn't grid-based
Base 1 Discharges TIME_SERIE_COLUMN This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series.
Base 1 Discharges U_COLUMN This keyword is used to give to model the column where the velocity X is defined in the data base time series file
Base 1 Discharges V_COLUMN This keyword is used to give to model the column where the velocity Y is defined in the data base time series file
Base 1 Discharges VERTICAL_DISCHARGE Serves to specify the discharge distribution in the vertical direction 1 discharge in the bottom cell
2 discharge in the surface cell
3 discharge in the cell that intersects the depth defined in the keyword K_DEPTH (no default value)
4 discharge in the layer defined in the keyword K_CELL (no default value)
5 Assumes a uniform distribution along the entire water column
Base 1 Discharges WEIR_COEF Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
Base 1 Discharges WEIR_LENGTH Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).

Module DrainageNetwork

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 DrainageNetwork ADVECTION_DIFUSION Compute advection and diffusion of property
Base 1 DrainageNetwork ADVECTION_SCHEME Numerical Discretization of Advection. 1 UpwindOrder1 (Upwind scheme of 1st order)
5 CentralDif (Central differences scheme)
Base 1 DrainageNetwork CHECK_NODES Check nodes consistency in the drainage network file
Base 1 DrainageNetwork CHECK_REACHES Check reaches consistency in the drainage network file (a reach connects 2 nodes)
Base 1 DrainageNetwork CONTINUOUS Computations follow from another simulation
Base 1 DrainageNetwork DATA_COLUMN Number of column in the time series file with the downstream water depth values
Base 1 DrainageNetwork DEFAULT_VALUE Default value for water depth at the downstream boundary condition
Base 1 DrainageNetwork DEFAULT_VALUE Default value for this property. Also used as initial value.
Base 1 DrainageNetwork DESCRIPTION Description of property
Base 1 DrainageNetwork DIFFUSION_SCHEME Numerical Discretization of Diffusion. 5 CentralDif (Central Differences discretization)
Base 1 DrainageNetwork DIFFUSIVITY Diffusivity of property
Base 1 DrainageNetwork DISCHARGES Use module discharges
Base 1 DrainageNetwork DOWNSTREAM_BOUNDARY Choose downstream boundary condition 0 Dam (flow at the outlet = 0.0)
1 Normal (solves KynematicWave at the outlet)
2 ImposedWaterDepth
3 ImposedWaterLevel
4 ImposedVelocity
Base 1 DrainageNetwork FILE_IN_TIME Downstream boundary condition evolution NONE Constant evolution of downstream boundary condition (constant water depth)
TIMESERIE Reads a time series with water depth for downstream boundary condition
Base 1 DrainageNetwork FILENAME Path to the file with the downstream water depth time serie values
Base 1 DrainageNetwork GLOBAL_MANNING Assigns a Manning rugosity coefficient to all the drainage network channels
Base 1 DrainageNetwork HYDRODYNAMIC_APROX Chooses the hydrodynamic approximation to be solved in the momentum equation 1 KinematicWave (friction = slope gradient)
2 DiffusionWave (full St Venant equation except for advection)
3 DynamicWave (full St Venant equation)
Base 1 DrainageNetwork INITIAL_WATER_DEPTH Assigns an initial water depth to all channels. only if continuous computation is not chosen.
Base 1 DrainageNetwork INITIALIZATION_METHOD Choose initialization method for this property. CONSTANT Constant initialization of property
Base 1 DrainageNetwork LIMIT_DT_COURANT Connect/disconnect limitation of dt by courant number 0/1 Inactive/Active 0 Boolean
Base 1 DrainageNetwork MIN_VALUE Minimum concentration of property.
Base 1 DrainageNetwork MIN_WATER_DEPTH Minimum water column for computations
Base 1 DrainageNetwork NAME Name of property
Base 1 DrainageNetwork NETWORK_FILE Path to the file that describes nodes and reaches
Base 1 DrainageNetwork TIME_SERIE Output of property values in time series files.
Base 1 DrainageNetwork TIME_SERIE_LOCATION Path to the file that has the time series location characteristics
Base 1 DrainageNetwork UNITS Units of property
Base 1 DrainageNetwork XS_CALC Method to compute trapezoidal cross section 1 Analytic
2 Discretization dH

Module Life

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 Life AFFINITY_NH4 Affinity for NH4 uptake
Base 1 Life AFFINITY_NO3 Affinity for NO3 uptake
Base 1 Life AFFINITY_PO4 Affinity for PO4 uptake
Base 1 Life ALPHA_CHL Chl specific initial slop of P vs I curve
Base 1 Life ASS_EFFIC Assimilation efficiency
Base 1 Life ASS_EFFIC_LOW_O2 Assimilation efficiency @ low O2
Base 1 Life ASSIMIL_EFFIC Assimilation efficiency
Base 1 Life BIO_SI_DISS Biogenic silica dissolution rate
Base 1 Life CHL_DEGRAD_RATE Chla degradation rate constant
Base 1 Life DENS_DEP_MORT Density-dependence mortality rate
Base 1 Life DOM_UP_KS Half saturation value for DOM uptake
Base 1 Life DOMSL_BAC_KS Bacteria mediated DOMsl Hydrolysis
Base 1 Life DOMSL_BAC_VMAX Vmax for DOMsl Hydrolysis
Base 1 Life EXC_DOM_SL_FRAC DOM diverted to semi-labile pool
Base 1 Life EXCRE_UP_FRAC Excreted fraction of uptake
Base 1 Life EXU_NUT_STRESS Exudation under nutrient stress
Base 1 Life GRAZ_AVAIL Availability of Prey X
Base 1 Life GRAZ_UP_KS Half saturation value for uptake
Base 1 Life LIGHT_LIM_METHOD Light limitation method
Base 1 Life LYS_REF_CON Lysis_Ref_Con
Base 1 Life MASS_XEK Command to make a mass conservation test
Base 1 Life MAX_ASSIMIL Maximal assimilation rate
Base 1 Life MAX_CHLN_RATIO Maximal Chl:N ratio
Base 1 Life MAX_NC_RATIO Maximal N:C ratio
Base 1 Life MAX_PC_RATIO Maximal P:C ratio
Base 1 Life MAX_SPEC_UP_@10C Maximum specific uptake @ 10ºC
Base 1 Life MAX_STORE_FILL Maximal rate of storage filling
Base 1 Life MIN_LYSIS Minimal lysis rate
Base 1 Life MIN_NC_RATIO Minimal N:C ratio
Base 1 Life MIN_PC_RATIO Minimal P:C ratio
Base 1 Life MIXOTROPHY Hability to perform mixotrophy
Base 1 Life MORT_DOM_SL_FRAC DOC_SL_Frac
Base 1 Life MORT_O2_DEP Oxygen-dependent mortality rate
Base 1 Life MORT_POM_FRAC Fraction of mortality to POM
Base 1 Life MORT_RATE Temperature-independent mortality rate
Base 1 Life NH4_Ks PO4 uptake affinity
Base 1 Life NIT_IN_COEF Nitrification inhibition coefficient
Base 1 Life NIT_O_N_CONV Nitrification O:N consumption ratio
Base 1 Life NITRIFRADLIM Light radiation bellow which nitrification occurs
Base 1 Life NITRIFRATE Nitrification rate
Base 1 Life NO3_Ks NO3 uptake affinity
Base 1 Life NUT_STRESS_TRESHOLD Nutrient stress threshold (sedimentation)
Base 1 Life O2_CARB_CONVERS Oxygen to carbon conversion factor
Base 1 Life O2_KS Oxygen half saturation constant
Base 1 Life O2_LOW_ASS_EFIC Oxygen concentration bollow which ass efic is low
Base 1 Life PHOTOINHIBITION Photoinhibition
Base 1 Life PO4_Ks PO4 uptake affinity
Base 1 Life POM_BAC_KS Bacteria mediated POM Hydrolysis MM constant
Base 1 Life POM_BAC_VMAX Vmax for POM Hydrolysis
Base 1 Life Q10_VALUE Q10 value for temperature limitation
Base 1 Life REDFIELD_NC Redfield N:C ratio
Base 1 Life REDFIELD_PC Redfield P:C ratio
Base 1 Life REDFIELD_SiC Standard Si:C ratio
Base 1 Life REF_TEMP Reference temperature
Base 1 Life REF_TEMP_Q10 Reference temperature for Q10 method
Base 1 Life REL_EXCESS_SI Release rate of excess silicate
Base 1 Life RESP_BASAL Basal respiration rate
Base 1 Life RESP_FRAC_PROD Respired fraction of production
Base 1 Life REST_RESP_@10C Rest respiration @ 10ºC
Base 1 Life SED_MIN Minimal sedimentation rate
Base 1 Life SED_NUT_STRESS Nutrient stress sedimentation rate
Base 1 Life SEDIM_MIN Minimal sedimentation rate
Base 1 Life SEDIM_NUT_STRESS Nutrient stress threshold (sedimentation)
Base 1 Life SI_UPTAKE_KS Silicate uptake Michaelis constant
Base 1 Life SILICA_USE Set Silica use by the producer
Base 1 Life TEMP_LIM_METHOD Temperature limitation method

Module LightExtinction

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 LightExtinction COEF_PARSONS_PORTELA Correct Default Coefficient for Parsons Portela SW Radiation parameterisation Needs SW_EXTINCTION_TYPE: 4 0.04 Real
Base 1 LightExtinction LW_EXTINCTION_COEF Long-wave extinction coeficient 0.333
Base 1 LightExtinction LW_EXTINCTION_COLUMN
Base 1 LightExtinction LW_EXTINCTION_TYPE The method used in light extinction estimate 1 Constant 1
5 Ascii file
Base 1 LightExtinction LW_PERCENTAGE 0.4
Base 1 LightExtinction SW_EXTINCTION_COEF Short-wave extinction coeficient 0.05 Real
Base 1 LightExtinction SW_EXTINCTION_COLUMN
Base 1 LightExtinction SW_EXTINCTION_TYPE The method used in light extinction estimate 1 Constant 1
2 Parsons Ocean
3 Portela-Tagus Estuary
4 Combined Parsons-Portela
5 Ascii file
6 Multiparameter
Base 1 LightExtinction SW_KW Short wave absorption coefficient
Base 1 LightExtinction SW_LW_EXTINCTION_FILE
Base 1 LightExtinction SW_PERCENTAGE 0.6

Module MacroAlgae

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 MacroAlgae BEACHED_MORT_RATE Beached drifting macroalgae mortality rate
Base 1 MacroAlgae DEPLIM Maximum SPM deposition flux allowed for macroalgae to grow
Base 1 MacroAlgae DISSDON fraction of dissolved organic material excreted by macroalgae
Base 1 MacroAlgae DT Time step compute macroalgae biogeochemical processes
Base 1 MacroAlgae ENDREPC Macroalgae endogenous respiration rate
Base 1 MacroAlgae EROCRITSS Critical shear stress for macroalgae detachment to occur
Base 1 MacroAlgae EXCRCONS Macroalgae excretion rate
Base 1 MacroAlgae GRAZCONS Grazing rate over macroalgae
Base 1 MacroAlgae GROWMAX macroalgae maximum growth rate
Base 1 MacroAlgae MACROALGAE_MINCONC Minimum residual value for macroalgae abundance
Base 1 MacroAlgae MIN_OXYGEN Minimum oxygen concentration for macroalgae growth
Base 1 MacroAlgae MORTCON Macroalgae mortality half saturation constant
Base 1 MacroAlgae MORTMAX Macroalgae natural mortality rate
Base 1 MacroAlgae NITROGEN Defines if the user wishes to compute the nitrogen cycle
Base 1 MacroAlgae NSATCONS nitrogen half-saturation constant for macroalgae
Base 1 MacroAlgae PELAGIC_MODEL Pelagic biogeochemical module coupled
Base 1 MacroAlgae PHOSPHORUS Defines if the user wishes to compute the phosphorus cycle
Base 1 MacroAlgae PHOTOIN macroalgae optimum radiation value
Base 1 MacroAlgae PHOTORES Macroalgae photorespiration rate
Base 1 MacroAlgae PSATCONS phosphorus half-saturation constant for macroalgae
Base 1 MacroAlgae RATIONC Macroalgae nitrogen/carbon ratio
Base 1 MacroAlgae RATIOPC Macroalgae phosphorus/carbon ratio
Base 1 MacroAlgae SALT_EFFECT Include salinity limitation on macroalgae growth
Base 1 MacroAlgae SALTCRIT Macroalgae critical salinity limit growth
Base 1 MacroAlgae SALTMAX Macroalgae maximum salinity for growth
Base 1 MacroAlgae SALTMIN Macroalgae minimum salinity for growth
Base 1 MacroAlgae SALTOPT Macroalgae optimum salinity for growth
Base 1 MacroAlgae SOLEXCR Fraction of soluble inorganic material excreted by macroalgae
Base 1 MacroAlgae TCONST1 Constant to control temperature response curve shape
Base 1 MacroAlgae TCONST2 Constant to control temperature response curve shape
Base 1 MacroAlgae TCONST3 Constant to control temperature response curve shape
Base 1 MacroAlgae TCONST4 Constant to control temperature response curve shape
Base 1 MacroAlgae TMIN Macroalgae minimum temperature for growth
Base 1 MacroAlgae TOPTMAX Macroalgae optimum maximum temperature for growth
Base 1 MacroAlgae TOPTMIN Macroalgae optimum minimum temperature for growth

Module Profile

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 Profile DT_OUTPUT_TIME Time step to perform profile outputs in HDF5
Base 1 Profile LOCALIZATION_I Grid cell index I where to perform profile output
Base 1 Profile LOCALIZATION_J Grid cell index J where to perform profile output
Base 1 Profile NAME Name of profile output

Module SedimentQuality

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 SedimentQuality Acoef Coefficient for labile OM decay rate
Base 1 SedimentQuality Acoef Acoef for Heterotrophs decay rate
Base 1 SedimentQuality Acoef Acoef for Autotrophs C specific decay (death) Rate
Base 1 SedimentQuality Acoef Acoef for the Anaerobic C specific decay (death) Rate
Base 1 SedimentQuality Acoef Calculates the AmmoniaToNitrate (nitrification) specific Rate
Base 1 SedimentQuality Acoef A coef for the AmmoniaImobilization specific Rate
Base 1 SedimentQuality Acoef Acoef for for the NitrateToNgas specific Rate (denitrification)
Base 1 SedimentQuality Acoef Acoef for the NitrateImobilization specific Rate
Base 1 SedimentQuality ActivationE Activation Energy for labil organic mater carbon decay rate
Base 1 SedimentQuality ActivationE Coeficient for refractory OM decay rate
Base 1 SedimentQuality ActivationE AE for Heterotrophs decay rate
Base 1 SedimentQuality ActivationE AE activation energy for the Autotrophs C specific decay (death) Rate
Base 1 SedimentQuality ActivationE AE for the Anaerobic C specific decay (death) Rate
Base 1 SedimentQuality ActivationE Calculates the AmmoniaToNitrate (nitrification) specific Rate.
Base 1 SedimentQuality ActivationE Calculates the AmmoniaImobilization specific Rate
Base 1 SedimentQuality ActivationE Activation Energy for the NitrateToNgas specific Rate
Base 1 SedimentQuality ActivationE Activation Energy for the NitrateImobilization specific Rate
Base 1 SedimentQuality CARBON Determines if calculations of carbon related properties is performed
Base 1 SedimentQuality CARBON_EFICIENCY Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2
Base 1 SedimentQuality CARBON_EFICIENCY Carbon assimilation efficiency for Anaerobic population
Base 1 SedimentQuality CN_RATIO CN ratio of Hetrotrophs biomass
Base 1 SedimentQuality CN_RATIO CN ratio of Autotrophs biomass
Base 1 SedimentQuality CN_RATIO CN ratio of anaerobic population.
Base 1 SedimentQuality DTSECONDS Time step for sediment quality calculation
Base 1 SedimentQuality EXPLICIT Sistem is solved with explicit formulation
Base 1 SedimentQuality MINIMUM_POPULATION Minimum population for death rate to occur (below value no death)
Base 1 SedimentQuality MINIMUM_POPULATION Minimum population for death rated to take place
Base 1 SedimentQuality MINIMUM_POPULATION Minimum population for death rate top occur
Base 1 SedimentQuality NITROGEN Option to activate or deactivate the calculation of Nitrogen related properties
Base 1 SedimentQuality NITROGEN_EFICIENCY NITROGEN EFICIENCY for autotrophic population
Base 1 SedimentQuality NITROGEN_EFICIENCY Nitrogen assimilation efficiency of anaerobic population
Base 1 SedimentQuality POPULATION_CARBON_RATIO Convertion form carbon concentration to population for Anaerobic populations
Base 1 SedimentQuality POPULATION_CARBON_RATIO COnversion form Carbon mass of hetrotrphs to population nºs
Base 1 SedimentQuality POPULATION_CARBON_RATIO Convertion form carbon biomass to nº of individual cells
Base 1 SedimentQuality Temperature Temperature for Autotrophs C specific decay (death) Rate
Base 1 SedimentQuality Temperature Optimum temperature for the Anaerobic C specific decay (death) Rate
Base 1 SedimentQuality Temperature Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate
Base 1 SedimentQuality Temperature Optimum temperature for the AmmoniaImobilization specific Rate
Base 1 SedimentQuality Temperature OPtimum temperature for the NitrateToNgas specific Rate
Base 1 SedimentQuality Temperature Optimum temperature for the NitrateImobilization specific Rate
Base 1 SedimentQuality Temperature Optimum temperature for decay rate
Base 1 SedimentQuality Temperature Optimum Temperature for rate

Module WaterQuality

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 1 WaterQuality AFG Growth coefficient dependent of fishfood availability HalfSaturationConstant
Base 1 WaterQuality AGE Water "Age" : Lagrangean property
Base 1 WaterQuality ASS_EFIC Phytoplankton: Assimilation efficiency of flagellates by the zooplankton
Base 1 WaterQuality ATG Growth coefficient dependent of temperature
Base 1 WaterQuality ATZ Death coefficient dependent of temperature
Base 1 WaterQuality AWG Growth coefficient dependent of larvae weight
Base 1 WaterQuality AWZ Death coefficient dependent of larvae weight
Base 1 WaterQuality BACINGCIL Ciliates: Proportion of bacteria in microzooplankton ingestion
Base 1 WaterQuality BACMINSUB Bacteria: Minimum substract concentration for bacteria uptake
Base 1 WaterQuality BACNCONS Bacteria: Half-saturation constant for bacteria nutrient uptake
Base 1 WaterQuality BACTERIA Bacteria: Processes Simulation
Base 1 WaterQuality BACTRATIOOC Oxygen: Bacteria Oxygen/Carbon Ratio
Base 1 WaterQuality BARESPCO Bacteria: Excretion Rate
Base 1 WaterQuality BMAXUPTA Bacteria: Maximum nutrient uptake at the reference temperature
Base 1 WaterQuality BOD BOD: Processes Simulation
Base 1 WaterQuality BODCOEF BOD: BOD oxidation coefficient
Base 1 WaterQuality BODOSSAT BOD: Oxygen limitation half-saturation constant
Base 1 WaterQuality BODREF BOD: BOD oxidation at the reference temperature
Base 1 WaterQuality BRATIONC Bacteria: Nitrogen/Carbon Ratio
Base 1 WaterQuality BTG Growth coefficient dependent of temperature
Base 1 WaterQuality BTZ Death coefficient dependent of temperature
Base 1 WaterQuality BWG Growth coefficient dependent of larvae weight
Base 1 WaterQuality BWZ Death coefficient dependent of larvae weight
Base 1 WaterQuality CEXCCONS Ciliates: Excretion constant curve
Base 1 WaterQuality CEXCFAC Ciliates: Excretion factor
Base 1 WaterQuality CILBACASS Ciliates: Assimilation coefficient of bacteria by microzooplankton
Base 1 WaterQuality CILCORATIO Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
Base 1 WaterQuality CILEFFCAPBA Ciliates: Capture efficiency of bacteria
Base 1 WaterQuality CILEFFCAPPHY Ciliates: Capture efficiency of phytoplankton
Base 1 WaterQuality CILIATE Ciliates: Processes Simulation
Base 1 WaterQuality CILPHYASS Ciliates: Assimilation coefficient of flagellates by microzooplankton
Base 1 WaterQuality CILPREYMIN Ciliates: Minimum prey concentration for grazing
Base 1 WaterQuality CILRATINGZOO Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
Base 1 WaterQuality CINGMAX Ciliates: Maximum ingestion rate
Base 1 WaterQuality CRATIONC Ciliates: Nitrogen/Carbon Ratio
Base 1 WaterQuality CRATIOPC Ciliates: Phosphorus/Carbon Ratio
Base 1 WaterQuality CREFRESP Ciliates: Carbon consumption rate by respiration
Base 1 WaterQuality DENITREF Nitrogen: Reference denitirfication rate
Base 1 WaterQuality DENSATCO Nitrogen: Denitrification half-saturation constant
Base 1 WaterQuality DIASS_EFIC Diatoms: Assimilation efficiency of diatoms by zooplankton
Base 1 WaterQuality DIATOMS Diatoms: Processes Simulation
Base 1 WaterQuality DIDISSDON Diatoms: Fraction of dissolved organic material in excretions
Base 1 WaterQuality DIEXCRCONS Diatoms: Excretion constant
Base 1 WaterQuality DIFENDREPC Diatoms: Endogenous respiration constant
Base 1 WaterQuality DIGRAZMIN Zooplankton: Minimum diatoms concentration for grazing
Base 1 WaterQuality DIGROWMAX Diatoms: Maximum gross growth rate
Base 1 WaterQuality DIMORTCON Diatoms: Mortality half-saturation Constant
Base 1 WaterQuality DIMORTMAX Diatoms: Maximum Mortality Rate
Base 1 WaterQuality DINSATCONS Diatoms: Nitrogen half-saturation constant
Base 1 WaterQuality DIPHOTOIN Diatoms: Optimum light intensity for photosynthesis
Base 1 WaterQuality DIPHOTORES Diatoms: Fraction of actual photosynthesis oxidized by photorespiration
Base 1 WaterQuality DIPSATCONS Diatoms: Phosphorus half-saturation constant
Base 1 WaterQuality DIRATINGZOO Zooplankton: Proportion of diatoms in mesozooplankton ingestion
Base 1 WaterQuality DIRATIONC Diatoms: Nitrogen/Carbon Ratio
Base 1 WaterQuality DIRATIOPC Diatoms: Phosphorus/Carbon Ratio
Base 1 WaterQuality DIRATIOSIC Diatoms: Silica/Carbon Ratio
Base 1 WaterQuality DISISATCONS Diatoms: Silicate half-saturation constant
Base 1 WaterQuality DISOLEXCR Diatoms: Fraction of soluble inorganic material in excretions
Base 1 WaterQuality DITCONST1 Diatoms: Constant to control temperature response curve shape
Base 1 WaterQuality DITCONST2 Diatoms: Constant to control temperature response curve shape
Base 1 WaterQuality DITCONST3 Diatoms: Constant to control temperature response curve shape
Base 1 WaterQuality DITCONST4 Diatoms: Constant to control temperature response curve shape
Base 1 WaterQuality DITMAX Diatoms: Maximum temperature tolerable for growth
Base 1 WaterQuality DITMIN Diatoms: Minimum tolerable temperature for growth
Base 1 WaterQuality DITOPTMAX Diatoms: Maximum temperature of the optimal interval for photosynthesis
Base 1 WaterQuality DITOPTMIN Diatoms: Minimum temperature of the optimal interval for photosynthesis
Base 1 WaterQuality DIZOASS Zooplankton: Assimilation coefficient of diatoms by mesozooplankton
Base 1 WaterQuality DIZOOEFFCAP Zooplankton: Capture efficiency of diatoms
Base 1 WaterQuality DTSECONDS Time step for water quality processes calculation
Base 1 WaterQuality EXCRCONS Phytoplankton: Excretion constant
Base 1 WaterQuality EXPLICIT Explicit Method
Base 1 WaterQuality FDISSDON Phytoplankton: Fraction of dissolved organic material in excretions
Base 1 WaterQuality FENDREPC Phytoplankton: Endogenous respiration constant
Base 1 WaterQuality FINAL_AGE Larvae Final Age
Base 1 WaterQuality FINAL_LENGTH Larvae Final Length
Base 1 WaterQuality FISHFOOD_REF Reference food availability
Base 1 WaterQuality FMORTCON Phytoplankton: Mortality half saturation rate
Base 1 WaterQuality FMORTMAX Phytoplankton: Maximum mortality
Base 1 WaterQuality FRATIONC Phytoplankton: Nitrogen/Carbon Ratio
Base 1 WaterQuality FRATIOPC Phytoplankton: Phosphorus/Carbon ratio
Base 1 WaterQuality FREGSATC Nutrients: Nutrient regeneration half-saturation rate
Base 1 WaterQuality FSOLEXCR Phytoplankton: Fraction of soluble inorganic in excretions
Base 1 WaterQuality GRAZBACMIN Ciliates: Minimum flagellates concentration for grazing
Base 1 WaterQuality GRAZCILMIN Zooplankton: Minimum microzooplankton concentration for grazing
Base 1 WaterQuality GRAZFITOMIN Zooplankton: Minimum fagellates concentration for grazing
Base 1 WaterQuality GROWMAXF Phytoplankton: Maximum growth rate
Base 1 WaterQuality GROWMAXZ Zooplankton: Maximum zooplankton growth rate
Base 1 WaterQuality IMPLICIT Implicit Method Calculation
Base 1 WaterQuality INGCONSC Ciliates: Half-saturation constant for grazing
Base 1 WaterQuality INGCONSZ Zooplankton: Half-saturation constant for predation
Base 1 WaterQuality INIT_AGE Larvae Inital Age
Base 1 WaterQuality INIT_LENGTH Larvae Inital Length
Base 1 WaterQuality INTER_AGE Larvae Intermediate Age
Base 1 WaterQuality INTER_LENGTH Larvae Intermediate Length
Base 1 WaterQuality IVLEVCON Zooplankton: Ivlev grazing constant
Base 1 WaterQuality LARVAE Larvae Processes Simulation
Base 1 WaterQuality LDENSITY Larvae density factor
Base 1 WaterQuality LSHAPE Larvae shape factor
Base 1 WaterQuality MAXMORTCI Ciliates: Maximum Mortality Rate
Base 1 WaterQuality MAXMORTZ Zooplankton: Maximum mortality rate
Base 1 WaterQuality MINMORTCI Ciliates: Minimum Mortality rate
Base 1 WaterQuality MINMORTZ Zooplankton: Minimum mortality rate
Base 1 WaterQuality MINOXYGEN Oxygen: Minimum oxygen concentration allowed
Base 1 WaterQuality MORTCICOEF Ciliates: Mortality coefficient
Base 1 WaterQuality MORTZCOEF Zooplankton: Shape factor for the mortality curve of zooplankton
Base 1 WaterQuality NATMORB Bacteria: Natural mortality rate
Base 1 WaterQuality NITONRAT Oxygen: Oxygen/Carbon in Nitrate
Base 1 WaterQuality NITRIREF Nitrogen: Reference nitrification rate
Base 1 WaterQuality NITROGEN Nitrogen: Biogeochemical Processes Simulation
Base 1 WaterQuality NITSATCO Nitrogen: Nitrification half-saturation constant
Base 1 WaterQuality NMINENR Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)
Base 1 WaterQuality NMINR Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)
Base 1 WaterQuality NOPCOEF Nitrogen: PON decomposition temperature coefficient
Base 1 WaterQuality NOPREF Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)
Base 1 WaterQuality NPHASES Number of larvae phases (valid values are 1 and 2)
Base 1 WaterQuality NSATCONS Phytoplankton: Nitrogen half-saturation constant
Base 1 WaterQuality OCRATIO Oxygen: Oxygen/Carbon in CO2
Base 1 WaterQuality OMRATIONC Oxygen: Organic Matter Nitrogen/Carbon Ratio
Base 1 WaterQuality OMRATIOPC Oxygen: Organic Matter Phosphorus/Carbon Ratio
Base 1 WaterQuality PHDECOMP Nitrogen: Fraction of PON available for mineralization
Base 1 WaterQuality PHOSOPRAT Oxygen: Oxygen/Carbon in Phosphate
Base 1 WaterQuality PHOSPHOR Phosphorus: Biogeochemical Processes Simulation
Base 1 WaterQuality PHOTOIN Phytoplankton: Optimum light intensity for photosyntesis
Base 1 WaterQuality PHOTORES Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration
Base 1 WaterQuality PHOTOSOC Oxygen: Photosynthesis Oxygen/Carbon ratio
Base 1 WaterQuality PHYINGCIL Ciliates: Proportion of flagellates in microzooplankton ingestion
Base 1 WaterQuality PHYRATING Zooplankton: proportion of phytoplankton in mesozooplankton ingestion
Base 1 WaterQuality PHYTO Phytoplankton: Processes Simulation
Base 1 WaterQuality PLANK_OC_RAT Oxygen: Oxygen/Carbon ratio in plankton respiration
Base 1 WaterQuality PMINNR Phosphorus: DOPnr mineralization rate at reference temperature
Base 1 WaterQuality PMINNRCOEF Phosphorus: DOPnr mineralization temperature coefficient
Base 1 WaterQuality PMINR Phosphorus: DOPre mineralization rate at reference tempearture
Base 1 WaterQuality PMINRCOEF Phosphorus: DOPre mineralization temperature coefficient
Base 1 WaterQuality PPARTMIN Phosphorus: POP decomposition rate at reference temperature
Base 1 WaterQuality PSATCONS Phytoplankton: Phosphorus half-saturation constant
Base 1 WaterQuality SEMIIMP Semi-implicit Method Calculation
Base 1 WaterQuality SIDISSTCOEF Silica: Biogenic silica dissolution temperature coefficient
Base 1 WaterQuality SIKDISS Silica: Biogenic silica dissolution rate in the water column at the reference temperature
Base 1 WaterQuality SILICA Silica: Processes Simulation
Base 1 WaterQuality TBCONST1 Bacteria: Constant to control temperature response curve shape
Base 1 WaterQuality TBCONST2 Bacteria: Constant to control temperature response curve shape
Base 1 WaterQuality TBCONST3 Bacteria: Constant to control temperature response curve shape
Base 1 WaterQuality TBCONST4 Bacteria: Constant to control temperature response curve shape
Base 1 WaterQuality TBMAX Bacteria: Maximum temperature tolerable temperature for growth
Base 1 WaterQuality TBMIN Bacteria: Minimum temperature tolerable for growth
Base 1 WaterQuality TDENCOEF Nitrogen: Denitrification Temperature Coefficient
Base 1 WaterQuality TEMPERATURE_REF Larvae Reference temperature
Base 1 WaterQuality TFCONST1 Phytoplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TFCONST2 Phytoplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TFCONST3 Phytoplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TFCONST4 Phytoplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TFMAX Phytoplankton: Maximum temperature tolerable for growth
Base 1 WaterQuality TFMIN Phytoplankton: Minimum temperature tolerable for growth
Base 1 WaterQuality TMINNR Nitrogen: DONnr mineralization temperature coefficient
Base 1 WaterQuality TMINR Nitrogen: DONr mineralization temperature coefficient
Base 1 WaterQuality TNITCOEF Nitrogen: Nitrification temperature coefficient
Base 1 WaterQuality TOPTBMAX Bacteria: Maximum temperature of the optimal interval for growth
Base 1 WaterQuality TOPTBMIN Bacteria: Minimum temperature of the optimal interval for growth
Base 1 WaterQuality TOPTFMAX Phytoplankton: Maximum temperature of the optimal interval for photosyntesis
Base 1 WaterQuality TOPTFMIN Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis
Base 1 WaterQuality TOPTZMAX Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth
Base 1 WaterQuality TOPTZMIN Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth
Base 1 WaterQuality TPPARTMINCOEF Phosphorus: POP decomposition temperature coefficient
Base 1 WaterQuality TZCONST1 Zooplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TZCONST2 Zooplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TZCONST3 Zooplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TZCONST4 Zooplankton: Constant to control temperature response curve shape
Base 1 WaterQuality TZMAX Zooplankton: Maximum temperature tolerable for growth
Base 1 WaterQuality TZMIN Zooplankton: Minimum temperature tolerable for growth
Base 1 WaterQuality ZDISSDON Zooplankton: Dissolved organic fraction in excretions
Base 1 WaterQuality ZEXCCONS Zooplankton: Excretion constant for zooplankton
Base 1 WaterQuality ZEXCFAC Zooplankton: Excretion Factor
Base 1 WaterQuality ZINGMAX Zooplankton: Maximun ingestion rate
Base 1 WaterQuality ZOCILASS Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton
Base 1 WaterQuality ZOCRATIO Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
Base 1 WaterQuality ZOO Zooplankton: Processes Simulation
Base 1 WaterQuality ZOOEFFCAPCIL Zooplankton: Capture efficiency of microzoolankton
Base 1 WaterQuality ZOOEFFCAPHY Zooplankton: Capture efficiency of phytoplankton
Base 1 WaterQuality ZOOPREYMIN Zooplankton: Minimum prey concentration for grazing
Base 1 WaterQuality ZOPHYASS Zooplankton: Assimilation coefficient of flagellates by mesozooplankton
Base 1 WaterQuality ZPREDMOR Zooplankton: Predatory mortality rate (predation by higher trophic levels)
Base 1 WaterQuality ZRATIONC Zooplankton: Nitrogen/Carbon Ratio
Base 1 WaterQuality ZRATIOPC Zooplankton: Phosphorus/Carbon ratio
Base 1 WaterQuality ZREFRESP Zooplankton: Carbon consumption rate by respiration
Base 1 WaterQuality ZSOLEXCR Zooplankton: Soluble inorganic fraction in excretions

MOHID Base 2

Module Atmosphere

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 Atmosphere BOX_TIME_SERIE Output of property values in time series files, integrated in boxes.
Base 2 Atmosphere DATA_COLUMN Number of column in the time series file.
Base 2 Atmosphere FILENAME Path to the file with the time series.
Base 2 Atmosphere IRRIGATION Property added by irrigation
Base 2 Atmosphere NO_INTERPOLATION This keyword is deprecated. Use accumulated values use instead.
Base 2 Atmosphere ACCUMULATE_VALUES Use mm with ACCUMULATE_VALUES = 1.
Base 2 Atmosphere USE_ORIGINAL_VALUES use a FLUX (ex. mm/hour) with USE_ORIGINAL_VALUES = 1.
Base 2 Atmosphere OUTPUT_HDF Output of property values in HDF files.
Base 2 Atmosphere OUTPUT_TIME Output instants of HDF5 file.
Base 2 Atmosphere RADIATION_METHOD Method to compute solar radiation 1 Climatologic solar radiation algorithm
2 CEQUALW2 solar radiation algorithm
Base 2 Atmosphere RANDOM_COMPONENT Random component of property.
Base 2 Atmosphere STATISTICS Choose to compute the statistics of this property
Base 2 Atmosphere STATISTICS_FILE Path to the file with the statistics definition for this property.
Base 2 Atmosphere TIME_SERIE Output of property values in time series files.
Base 2 Atmosphere TIME_SERIE_LOCATION Path to the file that has the time series location characteristics.

Module Geometry

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 Geometry DISPLACEMENT_LIMIT the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1)
Base 2 Geometry DOMAINDEPTH The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
Base 2 Geometry EMPTY_TOP_LAYERS Number of empty layers counting from top
Base 2 Geometry EQUIDISTANT Thickness of layers admitting that all the layers have the same thickness
Base 2 Geometry FACES_OPTION Methodology to compute areas between cells 2 Average thickness of the adjacent water columns (advised option)
3 Minimum thickness of the adjacent water columns (advanced user option)
Base 2 Geometry GRIDMOVEMENTDUMP
Base 2 Geometry ID Domain ID
Base 2 Geometry IMPER_COEF_U U Coefficient to compute faces areas in U points
Base 2 Geometry IMPER_COEF_V V Coefficient to compute faces areas in V points
Base 2 Geometry IMPER_COEFX_U X_U Coefficient to compute faces areas in U points
Base 2 Geometry IMPER_COEFX_V X_V Coefficient to compute faces areas in V points
Base 2 Geometry IMPERMEABILITY Consider impermeable cell faces
Base 2 Geometry INITIALIZATION_METHOD Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity CARTESIAN Cartesian type coordinates
SIGMA Sigma type coordinates
Base 2 Geometry LAYERS Number of layers
Base 2 Geometry LAYERTHICKNESS If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers
Base 2 Geometry MIN_TOP_THICKNESS minimum thickness of collapsing cells of the Harmonic domain
Base 2 Geometry MINEVOLVELAYERTHICKNESS Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1)
Base 2 Geometry MINIMUMDEPTH water column thickness below which the cell is considered uncovered
Base 2 Geometry MININITIALLAYERTHICKNESS minimal thickness of the bottom cells
Base 2 Geometry REMOVE_LAND_BOTTOM_LAYERS Remove bottom layers with no water cells
Base 2 Geometry TOLERANCEDEPTH Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
Base 2 Geometry TOTALTHICKNESS Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
Base 2 Geometry TYPE Type of vertical coordinate of the domain CARTESIAN Cartesian coordinates
CARTESIANTOP A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
FIXSEDIMENT Fixed Sediment coordinates
FIXSPACING Fixed Spacing coordinates - used to study flows close to the bottom
HARMONIC Harmonic coordinates - the horizontal faces close to the surface

expand and collapse depending on the variation of the surface elevation. This coordinate was implemented in the geometry module to simulate reservoirs.

LAGRANGIAN Lagrangian coordinates - moves the upper and

lower faces with the vertical flow velocity.

SIGMA Sigma coordinates
SIGMATOP A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below

Module BoxDif

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 BoxDif OUTPUT_FILE Output file location
Base 2 BoxDif TYPE Coordinate Type
Base 2 BoxDif WRITE_BOXES Option to write boxes output file

Module FillMatrix

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 FillMatrix BOXES_VALUES Sequence of values for each box starting from box 1.
Base 2 FillMatrix CoefA Coeficient to compute analytical profile.
Base 2 FillMatrix CoefB Coeficient to compute analytical profile
Base 2 FillMatrix DATA_COLUMN DATA_COLUMN is the number of the relevant column in the time series file.
Base 2 FillMatrix DEFAULTVALUE Default value when INITIALIZATION_METHOD is used.
Base 2 FillMatrix DEPTH_PROFILE Sequence of depth values. Used with PROFILE option.
Base 2 FillMatrix FILE_IN_TIME Defines the kind of reading operation performed in time to modify the field NONE Matrix is not modified from reading values from file
HDF Reads data from an HDF5 file. There are restrictions regarding file format:

1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid. 2) In the Grid folder it is required to have the data sets: "Bathymetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints". 3) The name of the fields must be recognised by MOHID (see list of supported names) 4) Time data set must contain as many instants as the field data sets 5) Time data set must also contain dates for a period of the same or greater duration of the simulation.

PROFILE_TIME_SERIE Read solution from various profiles in time
TIMESERIE The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN.
Base 2 FillMatrix FILENAME Path to the file containing imposed data
Base 2 FillMatrix FILENAME_DEFAULT Path to the file containing data for initialization of default value.
Base 2 FillMatrix HDF_FIELD_NAME HDF5 group name
Base 2 FillMatrix INITIALIZATION_DEFAULT Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
Base 2 FillMatrix INITIALIZATION_METHOD Initial condition data input method. ANALYTIC PROFILE Initialization made by an analytical vertical profile.
ASCII_FILE Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.

If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.

BOXES Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
CONSTANT Constant value for all domain.
HDF Reads initial field from a HDF file. Field is interpolated in time if necessary.
LAYERS Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword.
PROFILE Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
PROFILE_TIMESERIE Read initial field from various profiles.
TIMESERIE Reads initial values from a time series file. If necessary the initial value is interpolated in time.
Base 2 FillMatrix LAYERS_VALUES Sequence of values for each layer starting from the bottom layer.
Base 2 FillMatrix MULTIPLYING_FACTOR Data field multiplying factor. HDF5 only.
Base 2 FillMatrix NDEPTHS Number of values that the define the profile.
Base 2 FillMatrix PROFILE_TYPE Type of analytical profile EXPONENTIAL Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
LINEAR Profile has a linear format, given by the following expression:

Value = DefaultValue + CoefA * CellDepth / CoefB

Base 2 FillMatrix PROFILE_VALUES Sequence of values that constitute the profile.

Module Geometry

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 Geometry DISPLACEMENT_LIMIT the maximum displacement that the model allow cell faces to move vertically in meters
Base 2 Geometry DOMAINDEPTH The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
Base 2 Geometry EMPTY_TOP_LAYERS Number of empty layers counting from top
Base 2 Geometry EQUIDISTANT Thickness of layers admitting that all the layers have the same thickness
Base 2 Geometry FACES_OPTION Methodology to compute areas between cells 2 Average thickness of the adjacent water columns (advised option)
3 Minimum thickness of the adjacent water columns (advanced user option)
Base 2 Geometry GRIDMOVEMENTDUMP
Base 2 Geometry ID Domain ID
Base 2 Geometry IMPER_COEF_U U Coefficient to compute faces areas in U points
Base 2 Geometry IMPER_COEF_V V Coefficient to compute faces areas in V points
Base 2 Geometry IMPER_COEFX_U X_U Coefficient to compute faces areas in U points
Base 2 Geometry IMPER_COEFX_V X_V Coefficient to compute faces areas in V points
Base 2 Geometry IMPERMEABILITY Consider impermeable cell faces
Base 2 Geometry INITIALIZATION_METHOD Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity CARTESIAN Cartesian type coordinates
SIGMA Sigma type coordinates
Base 2 Geometry LAGRANGIAN Indicates that the defined domain can evolve in size as a lagrangian domain
Base 2 Geometry LAYERS Number of layers
Base 2 Geometry LAYERTHICKNESS If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers
Base 2 Geometry MIN_TOP_THICKNESS minimum thickness of colapsing cells of the Harmonic domain
Base 2 Geometry MINEVOLVELAYERTHICKNESS coeficient which indicates how much a Lagrangian layer
Base 2 Geometry MINIMUMDEPTH water column thickness below which the cell is considered uncovered
Base 2 Geometry MININITIALLAYERTHICKNESS minimal thickness of the bottom cells
Base 2 Geometry TOLERANCEDEPTH Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate
Base 2 Geometry TOTALTHICKNESS Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
Base 2 Geometry TYPE Type of vertical coordinate of the domain CARTESIAN Cartesian coordinates
CARTESIANTOP A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
FIXSEDIMENT Fixed Sediment coordinates
FIXSPACING Fixed Spacing coordinates - used to study flows close to the bottom
HARMONIC Harmonic coordinates - the horizontal faces close to the surface

expand and collapse depending on the variation of the surface elevation. This coordinate was implemented in the geometry module to simulate reservoirs.

LAGRANGIAN Lagrangian coordinates - moves the upper and

lower faces with the vertical flow velocity.

SIGMA Sigma coordinates
SIGMATOP A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below

Module GridData

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 GridData EVOLUTION Gets if the bathymetry can change in time
Base 2 GridData EVOLUTION_FILE Path to file that describes the time evolution.
Base 2 GridData FILL_VALUE Default value for points with no data
Base 2 GridData PROPERTY_NAME Name of the property that will change in time
Base 2 GridData TYPE_ZUV Matrix Types (Centered in Z, U or V)

Module HorizontalGrid

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 HorizontalGrid CONSTANT_SPACING_X Check if the spacing in X is constant
Base 2 HorizontalGrid CONSTANT_SPACING_Y Check if constant Spacing in y is used
Base 2 HorizontalGrid COORD_TIP Coordinate type of grid
Base 2 HorizontalGrid DX Grid spacing dx
Base 2 HorizontalGrid DY Gets DY spacing
Base 2 HorizontalGrid GRID_ANGLE Grid angle with north
Base 2 HorizontalGrid ILB_IUB minimum and maximum i in grid
Base 2 HorizontalGrid JLB_JUB minimum and maximum J in grid
Base 2 HorizontalGrid LATITUDE Latitude of grid
Base 2 HorizontalGrid LONGITUDE Longitude of grid
Base 2 HorizontalGrid ORIGIN X and Y origin of grid
Base 2 HorizontalGrid ZONE UTM zone of coordinate

Module Interpolation

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 Interpolation EXTRAPOLATE_2D
Base 2 Interpolation EXTRAPOLATE_PROFILE Check if the user wants to extrapolate in the vertical
Base 2 Interpolation IWD_N Coefficient use in the inverse weight interpolation
Base 2 Interpolation KERNEL_TYPE Type of kernel used in the convolution interpolations Exponential
Base 2 Interpolation KERNEL_TYPE Type of kernel used in the convolution interpolations Gaussian
Base 2 Interpolation MAX_DISTANCE Max distance for points to be consider in the inverse weight interpolation
Base 2 Interpolation MAX_ITERATIONS Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.
Base 2 Interpolation METHODOLOGY The methodology used in the interpolation process 1 Conservative convolution
2 NonConservative convolution
3 Triangulation
4 Bilinear
5 Spline 2D
6 Inverse weight
Base 2 Interpolation N_DIM The number of dimensions of the field to interpolate
Base 2 Interpolation N_GROUPS Number of groups generated for each dimension in the data-oriented convolution.
Base 2 Interpolation NC_TYPE Checks what class of NonConservative convolution process to use 1 User defined kernel for the NonConservative convolution
2 Smoothes the field using the PHI value
3 Data
Base 2 Interpolation PHI Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
Base 2 Interpolation POLI_DEGREE_VERT The order of the polynomial use to interpolate in the vertical
Base 2 Interpolation SAMPLE_SIZE Number of observations needed for the logistic regression in the data-oriented convolution.
Base 2 Interpolation TYPE_ZUV Where points are defined in the cell (Z - center; U - Face U; V : Face V)

Module Statistic

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Base 2 Statistic DAILY_STATISTIC Performs daily integration of statistic values
Base 2 Statistic GEOMETRIC_MEAN Performs geometric mean calculation for non negative parameters
Base 2 Statistic GLOBAL_STATISTIC Performs statistic calculation of every timestep
Base 2 Statistic LAYER_DEFINITION Layer definition
Base 2 Statistic MAX_DEPTH Max depth of layer
Base 2 Statistic MAX_LAYER Max layer k index
Base 2 Statistic METHOD_STATISTIC Way to perform the statistics (full matrix, layers, etc)
Base 2 Statistic MIN_DEPTH Minimum depth of layer
Base 2 Statistic MIN_LAYER Layer lower index start
Base 2 Statistic MONTHLY_STATISTIC Performs monthly integration of statistic values
Base 2 Statistic PERCENTILE

MOHID Land

Module Runoff

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Runoff ADJUST_SLOPE Slope correction 0/1 Inactive/Active 1 Boolean
Land Runoff ADVECTION Connect/disconnect advection 0/1 Inactive/Active 1 Boolean
Land Runoff ALLOW_BOUNDARY_INFLOW Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall 0/1 Inactive/Active 0 Boolean
Land Runoff BOUNDARY_VALUE Imposed boundary value Needed if IMPOSE_BOUNDARY_VALUE : 1 m Real
Land Runoff DT_FACTOR Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise) 1.25 Real
Land Runoff DT_SPLIT_FACTOR Factor to predict next number of iteration 2.0 Real
Land Runoff DYNAMIC_ADJUST_MANNING 0/1 Inactive/Active 0 Boolean
Land Runoff HYDRODYNAMIC_APROX The overland flow routing method. 1 Kinematic Wave 2 Integer
2 Diffusion Wave
3 Dynamic Wave
Land Runoff HYDRAULIC_RADIUS_MARGINS 0/1 Inactive/Active 1 Boolean
Land Runoff IMPOSE_BOUNDARY_VALUE Connect/disconnect imposing boundary value 0/1 Inactive/Active 0 Boolean
Land Runoff IMPOSE_MAX_VELOCITY 0/1 Inactive/Active 0 Boolean
Land Runoff LIMIT_DT_COURANT Connect/disconnect limitation of dt by courant number 0/1 Inactive/Active 0 Boolean
Land Runoff MAX_COURANT Maximum value for Courant number Needed if LIMIT_DT_COURANT : 1 1.0 Real
Land Runoff MAX_ITERATIONS Maximum number of internal iterations allowed for the module 1024 Integer
Land Runoff MAX_VELOCITY Needed if IMPOSE_MAX_VELOCITY : 1 0.1 Real
Land Runoff MIN_ITERATIONS Minimum number of internal iteration to start asking for a lower global dt 1 Integer
Land Runoff MIN_WATER_COLUMN Minimum water column for overland flow 0.001 m Real
Land Runoff MIN_WATER_COLUMN_ADVECTION Minimum water column for advection Needed if ADVECTION : 1 0.0 Real
Land Runoff WATER_COLUMN_FACE Method for computing water column in the face 1 Using maximum level and maximum bottom 1 Integer
2 Using maximum level and average of bottom
Land Runoff ROUTE_D4 Connect/disconnect route of water in 8 direction if accumulation cells exist 0/1 Inactive/Active 0 Boolean
Land Runoff ROUTE_D4_ON_DN Connect/disconnect route of water in 8 direction on cells that have drainage network 0/1 Inactive/Active 0 Boolean
Land Runoff SIMPLE_CHANNEL_FLOW 0/1 Inactive/Active 0 Boolean
Land Runoff STABILIZE Connect/disconnect stability criteria 0/1 Inactive/Active 0 Boolean
Land Runoff STABILIZE_FACTOR Fraction of cell volume allowed for volume variation in one time step Needed if STABILIZE : 1 0.1 % Real

Module Basin

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Basin ATMOSPHERE Use Module Atmosphere 0/1 Inactive/Active 1 Boolean
Land Basin DRAINAGE_NET Use Module DrainageNetork 0/1 Inactive/Active 1 Boolean
Land Basin POROUS_MEDIA Use Module Porous Media 0/1 Inactive/Active 1 Boolean
Land Basin RUN_OFF Use Module RunOff 0/1 Inactive/Active 1 Boolean

Module Irrigation

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Irrigation ACTIVE 1 Boolean
Land Irrigation END_INSTANT_THRESHOLD 0-23 23.0 hours Integer
Land Irrigation GEAR_DEBIT 10.0 mm Real
Land Irrigation GEAR_EFFICIENCY 0.85 Real
Land Irrigation GEAR_MAX_VEL 4.0 Real
Land Irrigation GEAR_MIN_VEL 0.2 Real
Land Irrigation GEAR_TYPE 1 CenterPivot 1 Integer
2 LinearPivot
3 Sprinkler
4 GravitySystem
5 DripIrrigation
Land Irrigation HEAD_TARGET -10.0 m Real
Land Irrigation HEAD_THRESHOLD -6.0 m Real
Land Irrigation MAX_CONSECUTIVE_DAYS 2 days Integer
Land Irrigation MAX_DAILY_IRRIGATION_TIME 86400.0 seconds Integer
Land Irrigation MAX_DEPTH_TO_CHECK 0.2 m Real
Land Irrigation MAX_SATURATED_FRACTION 0-1 0.3 Real
Land Irrigation METHOD 1 Fixed Irrigation (Fixed irrigation is provided by the user) 1 Integer
2 IrrigationBySteps
3 ContinuousIrrigation
Land Irrigation MIN_INTERVAL_BETWEEN_EVENTS 86400.0 seconds Integer
Land Irrigation NAME String
Land Irrigation SATURATION_THRESHOLD 0-1 0.9 Real
Land Irrigation SINGLE_SYSTEM 0/1 0 Boolean
Land Irrigation START_INSTANT_THRESHOLD 0-23 0.0 hours Integer
Land Irrigation START_TIME
Land Irrigation STOP_TIME

Module PorousMedia

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land PorousMedia ALPHA 1/m Real
Land PorousMedia BOTTOM_FILE Path to Bottom Topography File - String
Land PorousMedia CALC_DRAINAGE_FLUX 0/1 1 Boolean
Land PorousMedia CALC_HORIZONTAL 0/1 1 Boolean
Land PorousMedia COMPUTE_HYDRO_PRESSURE 0/1 1 Boolean
Land PorousMedia COMPUTE_SOIL_FIELD 0/1 0 Boolean
Land PorousMedia CONDUTIVITYFACE Way to interpolate conducivity face 1 Average 1 - Integer
2 Maximum
3 Minimum
4 Weigthed
5 Geometric Average
Land PorousMedia CONTINUOUS_OUTPUT_FILE Writes "famous" iter.log 0/1 1 Boolean
Land PorousMedia CUT_OFF_THETA_HIGH Set Theta = ThetaS when Theta > ThetaS 1e-15 Real
Land PorousMedia CUT_OFF_THETA_LOW Disables calculation when Theta is near ThetaR 1e-6 Real
Land PorousMedia DECREASE_DT Decrease of DT when iter > MAX_ITER 0.70 Real
Land PorousMedia DN_LINK
Land PorousMedia DN_LINK_AREA_METHOD Integer
Land PorousMedia FC_K_FACTOR Real
Land PorousMedia GW_SAT_FACTOR 0.99 Real
Land PorousMedia HEAD_LIMIT -100.0 m Real
Land PorousMedia HORIZONTAL_K_FACTOR Factor for Horizontal Conductivity = Kh / Kv 1 Real
Land PorousMedia ID Integer
Land PorousMedia IGNORE_WATER_COLUMN_ON_EVAP 0/1 1 Boolean
Land PorousMedia IMPOSE_BOUNDARY_VALUE 0/1 0 Boolean
Land PorousMedia IMPOSE_BOUNDARY_BOTTOM 0/1 0 Boolean
Land PorousMedia IMPOSE_BOUNDARY_BOTTOM_CONDITION
Land PorousMedia INCREASE_DT Increase of DT when iter < MIN_ITER 1.25 Real
Land PorousMedia INFIL_CONDUCTIVITY
Land PorousMedia L_FIT Real
Land PorousMedia LIMIT_EVAP_HEAD 0/1 0 Boolean
Land PorousMedia LIMIT_EVAP_WATER_VEL 0/1 0 Boolean
Land PorousMedia MAX_DTM_FOR_BOUNDARY
Land PorousMedia MIN_THETAF_FOR_BOUNDARY 0 Real
Land PorousMedia N_FIT Real
Land PorousMedia SAT_K Saturation conductivity m/s Real
Land PorousMedia START_WITH_FIELD Sets Theta initial Field Capacity 0/1 1 Boolean
Land PorousMedia STOP_ON_WRONG_DATE Stops if previous run end is different from actual Start 0/1 1 Boolean
Land PorousMedia THETA_HYDRO_COEF 0.98 Real
Land PorousMedia THETA_R Residual water content Real
Land PorousMedia THETA_S Saturation water content Real
Land PorousMedia THETA_TOLERANCE Converge Parameter 0.001 Real
Land PorousMedia VEL_HYDRO_COEF 1 Real

ModulePorousMediaProperties

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land PorousMediaProperties
Land PorousMediaProperties
Land PorousMediaProperties

ModuleReservoirs

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Reservoirs BOTTOM_FLUXES Connect or Disconnect bottom fluxes 0/1 0 Boolean
Land Reservoirs CONTINUOUS Computations follow from another simulation 0/1 Boolean
Land Reservoirs DISCHARGES Connect or Disconnect discharges 0/1 0 Boolean
Land Reservoirs INITIAL_VOLUME_DEFAULT_METHOD start percentage full 0/1 Integer
Land Reservoirs PROP_COMPUTE_METHOD Water properties concentration 1 instant mixing 1 Integer
2 retention time full mixing
Land Reservoirs RESERVOIR_FILE Path to reservoirs properties File String
Land Reservoirs START_PERCENTAGE_FULL percentage of max volume at start 0/100.0 Real
Land Reservoirs SURFACE_FLUXES Connect or Disconnect surface fluxes 0/1 0 Boolean
Land Reservoirs TIME_SERIE Checks if the user wants to write time series of the particle properties 0/1 Boolean
Land Reservoirs TIME_SERIE_LOCATION Path to time serie locations file String

Reservoir Parameters

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Reservoirs CONSTRUCTION_YEAR The year when the reservoir begin to operate Integer
Land Reservoirs COORDINATES Longitude and latitude geographic coordenates of the reservoir
Land Reservoirs DN_NODE_ID: ID location of the reservoir in the Drainage Network Integer
Land Reservoirs GRID_I Cell row where the reservoir is located in the GRID Integer
Land Reservoirs GRID_J Cell column where the reservoir is located in the GRID Integer
Land Reservoirs ID Reservoir ID Integer
Land Reservoirs NAME Reservoir name
Land Reservoirs MAX_OUTFLOW Maximum outflow the reservoir can operate Real
Land Reservoirs MAX_VOLUME maximum volume the reservoir can operate Real
Land Reservoirs MIN_OUTFLOW Enviromental flow 0 Real
Land Reservoirs MIN_VOLUME minimum volume the reservoir operates Real
Land Reservoirs OPERATION_TYPE Type of operation for the outflow in the reservoir 1 Operation is defined by the water level and the outflow Integer
2 Operation is defined by the water level and the outflow as a percentage of the inflow
3 Operation is defined by the percentage of reservoir volume and the outflow
4 Operation is defined by the percentage of reservoir volume and the outflow as a percentage of the inflow
5 Operation is defined by the percentage of reservoir volume and the outflow as a percentage of the maximum outflow

ModuleRunoffProperties

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land RunoffProperties
Land RunoffProperties
Land RunoffProperties

ModuleSnow

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Snow
Land Snow
Land Snow

ModuleVegetation

Vegetation.dat

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation ADJUST_RUE_FOR_CO2 Connects/disconnects CO2 limitation on plant growth 0/1 Inactive/Active 1 - Boolean
Land Vegetation ADJUST_RUE_FOR_VPD Connects/disconnects Vapour Pressure Deficit limitation plant growth 0/1 Inactive/Active 1 - Boolean
Land Vegetation ATMOSPHERE_CO2 Atmosphere CO2 concentrations - should be atmosphere prop 330 ppm Real
Land Vegetation ATMOSPHERE_OUTPUT Output averaged atmosphere properties during dt 0/1 Inactive/Active 0 - Boolean
Land Vegetation CHANGE_CANOPY_HEIGHT Changes made to swat code because showed error with grazing 0/1 Inactive/Active 0 - Boolean
Land Vegetation CHANGE_LAI_SENESCENCE Changes made to swat code because showed error with grazing 0/1 Inactive/Active 0 - Boolean
Land Vegetation DORMANCY Connects/disconnects dormancy 0/1 Inactive/Active 0 - Boolean
Land Vegetation EVOLUTION Global properties evolution 1 Read from file - Integer
2 Vegetation growth model
Land Vegetation FEDDES_DATABASE Readed if not using growth simulation - - String
Land Vegetation FERTILIZATION Connects/disconnects fertilization 0/1 Inactive/Active 0 - Boolean
Land Vegetation FERTILIZER_DATABASE Readed if growth simulation and if FERTILIZATION : 1 - - String
Land Vegetation FLUXES_TO_SOIL_OUTPUT Output fluxes to soil 0/1 Inactive/Active 0 - Boolean
Land Vegetation GRAZING Connects/disconnects grazing 0/1 Inactive/Active 0 - Boolean
Land Vegetation GROWTH_DATABASE Growth parameters for each vegetation type - read in case of vegetation growth simulation - - String
Land Vegetation HARVEST_KILL Connects/disconnects Harvest and/or Kill 0/1 Inactive/Active 0 - Boolean
Land Vegetation INTEGRATION_DT DT to integrate external variables until vegetation is called (vegetation DT) 86400 seconds Real
Land Vegetation LIMIT_TRANSP_WATER_VEL !Read if WATER_UPTAKE_METHOD == 1 0/1 Inactive/Active 0 - Boolean
Land Vegetation MODEL_EVOLUTION Global properties evolution 1 Vegetation growth will NOT be modeled - Integer
2 SWAT method will be used to model vegetation growth
Land Vegetation NITROGEN_DISTRIBUTION_PARAMETER 20 Real
Land Vegetation NITROGEN_STRESS Connects/disconnects N limitation on plant growth 0/1 Inactive/Active 0 - Boolean
Land Vegetation NUTRIENT_FLUXES_WITH_SOIL Connects/disconnects nutrient fluxes with soil 0/1 Inactive/Active 1 - Boolean
Land Vegetation NUTRIENT_UPTAKE_METHOD - 1 uptake is: concentration * water uptake 2 Integer
2 SWAT based (independent of water uptake)
3 NO nutrient uptake
Land Vegetation NUTRIENT_STRESS_METHOD - 1 Effective/optimal 2 Integer
2 SWAT based
Land Vegetation PARAMETERS_FILE Agricultural practices definition - - String
Land Vegetation PESTICIDE Connects/disconnects pesticides 0/1 Inactive/Active 0 - Boolean
Land Vegetation PESTICIDE_DATABASE Readed if growth simulation and PESTICIDE : 1 - - String
Land Vegetation PHOSPHORUS_DISTRIBUTION_PARAMETER 20 Real
Land Vegetation PHOSPHORUS_STRESS Connects/disconnects P limitation on plant growth 0/1 Inactive/Active 0 - Boolean
Land Vegetation ROOT_PROFILE if WATER_UPTAKE_METHOD = 1 1 Triangular 1 Integer
2 Constant
3 Exponential(SWAT-like)
Land Vegetation SALINITY_STRESS_METHOD if WATER_UPTAKE_METHOD = 1 1 Threshold/Slope 1 Integer
2 VanGenuchten(not implemented yet)
Land Vegetation TEMPERATURE_STRESS Connects/disconnects temp. limitation on plant growth 0/1 Inactive/Active 0 - Boolean
Land Vegetation VEGETATION_ID_FILE Vegetation distribution grid path - - String
Land Vegetation VEGETATION_DT Vegetation DT - seconds Real
Land Vegetation WATER_UPTAKE 0/1 Inactive/Active 1 - Boolean
Land Vegetation WATER_UPTAKE_COMPENSATION_FACTOR Factor for uptake compensation from lower layers if computed layer demand is not met if zero there will exist no compensation. If 1. total demand no met may come from lower layers 0. real
Land Vegetation WATER_UPTAKE_METHOD - 1 according to root profile 1 Integer
2 SWAT based (exponential and thresholds)
Land Vegetation WATER_UPTAKE_STRESS_METHOD if WATER_UPTAKE_METHOD = 1 1 Feddes 1 Integer
2 VanGenuchten
Land Vegetation WATER_STRESS Connects/disconnects water limitation on plant growth 0/1 Inactive/Active 1 - Boolean

Vegetation Parameters File

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation AGRIC_PRACT_ID Integer
Land Vegetation FILENAME String
Land Vegetation GRAZING_BIOMASS grazed biomass kh/ha.day Real
Land Vegetation GRAZING_DAYS Days of grazing (continuous) Integer
Land Vegetation GRAZING_FRACTION_TO_MANURE fraction of grazed biomass that goes to manure in same cell and day (0-1) Real
Land Vegetation GRAZING_MANURE_NFRACTION fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio) Real
Land Vegetation GRAZING_MANURE_NUREAFRACTION fraction of manure N that is Urea (0-1). The remainder will be organic N Real
Land Vegetation GRAZING_START_JULIANDAY julian day when grazing will occur Integer
Land Vegetation GRAZING_START_PLANTHU Percentage of POTENTIAL YEARLY HU when grazing will occur Real
Land Vegetation HARVEST_EFFICIENCY Efficiency for harvest operation (residue if lower than 1) Real
Land Vegetation HARVEST_JULIANDAY julian day when harvest operation occur Integer
Land Vegetation HARVEST_PLANTHU Percentage of PLANT ACCUMULATED HU when harvest operation occur Real
Land Vegetation HARVESTKILL_JULIANDAY julian day when harvestkill operation occur Integer
Land Vegetation HARVESTKILL_PLANTHU Percentage of PLANT ACCUMULATED HU when harvestkill operation occur Real
Land Vegetation KILL_JULIANDAY julian day when harvestkill operation occur Integer
Land Vegetation KILL_PLANTHU Percentage of PLANT ACCUMULATED HU when kill operation occur Real
Land Vegetation MATURITY_HU Total PLANT ACCUMULATED HU when reaching maturity Integer
Land Vegetation MINIMUM_BIOMASS_FOR_GRAZING minimum biomass for grazing kg/ha Real
Land Vegetation NAME String
Land Vegetation PLANTING_HUBASE Percentage of POTENTIAL YEARLY HU when planting will occur Real
Land Vegetation PLANTING_JULIANDAY Julian day when planting will occur Integer
Land Vegetation TRAMPLING_BIOMASS biomass not eaten but removed from plant and moved to soil, related to grazing efficiency kg/ha.day Real
Land Vegetation VEGETATION_ID crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database) Integer

Fertilization Parameters File

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation EXPLICIT_PHOSPHORUS 1 Explicit add phosphorus if needed - Boolean
0 Add phosphorus if nitrogen needed (SWAT method)
Land Vegetation FERTILIZER_APPLICATION_HU Percentage of POTENTIAL YEARLY HU when pesticide application will occur Real
Land Vegetation FERTILIZER_APPLICATION_JDAY julian day when pesticide application will occur Integer
Land Vegetation FERTILIZER_APPLICATION_KG_HA Amount of fertilizer applied kg/ha Real
Land Vegetation FERTILIZER_CONT_DAYS how many days of continuous application (read if FERTILIZER_CONT_ON : 1) Integer
Land Vegetation FERTILIZER_CONT_ON 1 If this is a continuous fertilizer application - Boolean
0 or absent if not
Land Vegetation FERTILIZER_ID Fertilizer used in autofertilization (see fertilizer database) Integer
Land Vegetation N_STRESS_TYPE 1 NTarget - Integer
2 Annual Max approach
Land Vegetation NITROGEN_ANNUAL_MAX Maximum amount of fertilizer in one year kg/ha Real
Land Vegetation NITROGEN_APPLICATION_MAX Maximum amount of fertilizer in one application kg/ha Real
Land Vegetation NITROGEN_TRESHOLD Percentage of stress below which autofertilization starts (0-1) Real
Land Vegetation PESTICIDE_APPLICATION_HU Percentage of POTENTIAL YEARLY HU when pesticide application will occur Real
Land Vegetation PESTICIDE_APPLICATION_JDAY julian day when pesticide application will occur Integer
Land Vegetation PESTICIDE_APPLICATION_KG_HA Amount of pesticide applied kg/ha Real
Land Vegetation PESTICIDE_ID Pesticide used in this application (see pesticide database) Integer
Land Vegetation PESTICIDE_CONT_DAYS how many days of continuous application (read if PESTICIDE_CONT_ON : 1) Integer
Land Vegetation PESTICIDE_CONT_ON 1 If this is a continuous pesticide application - Boolean
0 or absent if not
Land Vegetation PHOSPHORUS_ANNUAL_MAX only read if EXPLICIT_PHOSPHORUS : 1 Real
Land Vegetation PHOSPHORUS_APPLICATION_MAX only read if EXPLICIT_PHOSPHORUS : 1 Real
Land Vegetation PHOSPHORUS_TRESHOLD only read if EXPLICIT_PHOSPHORUS : 1 Real

Growth Database File

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation BASE_TEMPERATURE Real
Land Vegetation BIOMASS_ENERGY_RATIO Real
Land Vegetation BIOMASS_ENERGY_RATIO_HIGH Real
Land Vegetation BIOMASS_FRAC_REMOVED_DORMANCY Real
Land Vegetation CANOPY_HEIGHT_MAX Real
Land Vegetation CO2_HIGH Real
Land Vegetation GROWFRACTION_1 Real
Land Vegetation GROWFRACTION_2 Real
Land Vegetation GROWFRACTION_LAIDECLINE Real
Land Vegetation LAI_MAX Real
Land Vegetation LAI_MIN_DORMANCY Real
Land Vegetation MINIMUM_HARVEST_INDEX Real
Land Vegetation OPTIMAL_HARVEST_INDEX Real
Land Vegetation OPTIMAL_LAIMAXFRACTION_1 Real
Land Vegetation OPTIMAL_LAIMAXFRACTION_2 Real
Land Vegetation OPTIMAL_NITROGENFRACTION_N1 Real
Land Vegetation OPTIMAL_NITROGENFRACTION_N2 Real
Land Vegetation OPTIMAL_NITROGENFRACTION_N3 Real
Land Vegetation OPTIMAL_PHOSPHORUSFRACTION_P1 Real
Land Vegetation OPTIMAL_PHOSPHORUSFRACTION_P2 Real
Land Vegetation OPTIMAL_PHOSPHORUSFRACTION_P3 Real
Land Vegetation OPTIMAL_TEMPERATURE Real
Land Vegetation PLANT_TYPE Integer
Land Vegetation RADIATION_EXTINCTION_COEF Real
Land Vegetation ROOT_DEPTH_MAX Real
Land Vegetation RUE_DECLINE_RATE Real
Land Vegetation TREE_MAXIMUMBIOMASS Real
Land Vegetation TREE_YEARSTOMATURITY Integer
Land Vegetation YELD_NITROGENFRACTION Real
Land Vegetation YELD_PHOSPHORUSFRACTION Real

Pesticide Database File

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation PESTICIDE_APPLICATION_JDAY julian day when pesticide application will occur Integer
Land Vegetation PESTICIDE_APPLICATION_KG_HA Amount of pesticide applied kg/ha Real
Land Vegetation PESTICIDE_ID Integer
Land Vegetation PESTICIDE_NAME String

Fertilizer Database File

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation AMMONIA_FRACTION_IN_MINERAL_N Real
Land Vegetation FERTILIZER_ID Integer
Land Vegetation FERTILIZER_FRACTION_IN_SURFACE Real
Land Vegetation FERTILIZER_NAME String
Land Vegetation MINERAL_N_FRACTION_IN_FERTILIZER Real
Land Vegetation MINERAL_P_FRACTION_IN_FERTILIZER Real
Land Vegetation ORGANIC_N_FRACTION_IN_FERTILIZER Real
Land Vegetation ORGANIC_P_FRACTION_IN_FERTILIZER Real

Feddes Database File

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Land Vegetation FEDDES_H1 higher head for transpiration (saturation and oxygen loss) m Real
Land Vegetation FEDDES_H2 1st optimal head for transpiration m Real
Land Vegetation FEDDES_H3 2nd optimal head for transpiration m Real
Land Vegetation FEDDES_H3H m Real
Land Vegetation FEDDES_H3L m Real
Land Vegetation FEDDES_H4 lower head for transpiration (wilting) m Real
Land Vegetation FEDDES_R2L m Real
Land Vegetation FEDDES_R2H m Real
Land Vegetation FEDDES_TYPE 1 Normal 1 - Integer
2 With points
3 Variable consoant the transpiration
Land Vegetation SALINITY_STRESS_SLOPE
Land Vegetation SALINITY_STRESS_THRESHOLD
Land Vegetation STRESS_INTERACTION 1 Additive 1 - Integer
2 Multiplicative
3 Min of all
Land Vegetation USE_SALINITY 1 Yes 0 - Boolean
0 No
Land Vegetation VEGETATION_ID Integer

MOHID Water

Module Assimilation

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Assimilation COLD_RELAX_PERIOD Period of time along which relaxation has a linear increase
Water Assimilation DESCRIPTION Short description about the assimilation property
Water Assimilation DIMENSION Number of dimensions of the assimilation field 2 Two-Dimensional property
3 Three-Dimensional property
Water Assimilation NAME Name of the assimilation property
Water Assimilation OUTPUT_HDF Output HDF results for assimilation property
Water Assimilation OUTPUT_TIME Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water Assimilation TIME_SERIE Output time series for assimilation property
Water Assimilation TIME_SERIE_LOCATION Path to time serie locations file
Water Assimilation TYPE_ZUV Reference of the field to the grid. U Variable is referenced to the XX faces of the control volume
V Variable is referenced to the YY faces of the control volume
Z Variable is defined in the center of the control volume
Water Assimilation UNITS Assimilation property units
Water Assimilation VGROUP_PATH

Module Consolidation

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Consolidation BOXFLUXES Path to boxes file. If specified in input data file, computes box integration based on the defined file.
Water Consolidation COMPUTE_SHEAR_STRESS Compute shear stress or read from file
Water Consolidation CONSOLIDATION Specifies if consolidation is to be computed
Water Consolidation CONSOLIDATION_DT Time step for consolidation
Water Consolidation CONTINUOUS Speficies if initialization is based in previous run
Water Consolidation CSE_COEF Coeficient to compute exponential increase of critical shear stress for erosion with depth
Water Consolidation DECAYMENT Computes porosity decayment (compaction) inside the sediment compartment
Water Consolidation DECAYTIME Decay factor for consolidation
Water Consolidation INFINITE_CSE Maximum critical shear stress for erosion
Water Consolidation MAX_THICKNESS Maximum layer thickness allowed for a sediment layer
Water Consolidation MIN_THICKNESS Minimum thickness allowed for a sediment layer
Water Consolidation OUTPUT_HDF Output HDF results
Water Consolidation OUTPUT_TIME Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water Consolidation SURFACE_CSE Critical shear stress for erosion for the top layer
Water Consolidation TIME_SERIE Output time series
Water Consolidation TIME_SERIE_LOCATION Path to time serie locations file

Module FreeVerticalMovement

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water FreeVerticalMovement CHS Hindered settling concentration threshold
Water FreeVerticalMovement DEPOSITION Compute deposition for particulate property
Water FreeVerticalMovement FREEVERT_IMPEXP_ADV Coeficient to compute vertical movement through implicit or explicit methods 0.0 Implicit
1.0 Explicit
Water FreeVerticalMovement KL Parameter to compute settling velocity based on cohesive sediment concentration
Water FreeVerticalMovement KL1 Parameter to compute settling velocity based on cohesive sediment concentration
Water FreeVerticalMovement M Parameter to compute settling velocity based on cohesive sediment concentration
Water FreeVerticalMovement ML Parameter to compute settling velocity based on cohesive sediment concentration
Water FreeVerticalMovement SALTINT Definition of free vertical movement being function of salinity
Water FreeVerticalMovement SALTINTVALUE Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
Water FreeVerticalMovement WS_TYPE Method to compute settling velocity 1 Prescribe a constant settling velocity for particulate property
2 Compute settling velocity as function of cohesive sediment concentration
Water FreeVerticalMovement WS_VALUE Prescribed constant settling velocity

Module Hydrodynamic

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Hydrodynamic ADV_METHOD_H Defines the horizontal numerical method of advection.
Water Hydrodynamic ADV_METHOD_V
Water Hydrodynamic ATM_PRESSURE Checks if the user wants to consider the effect of the Atmospheric Pressure
Water Hydrodynamic ATM_PRESSURE_TYPE Defines the atmospheric reference field 0 no atmospheric reference field
1 use "atmospheric pressure" from Module Atmosphere
2 use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
Water Hydrodynamic BAROCLINIC Checks if the user pretends to compute the baroclinic pressure
Water Hydrodynamic BAROCLINIC_METHOD
Water Hydrodynamic BAROCLINIC_OBC_DISCRET
Water Hydrodynamic BAROCLINIC_POLIDEGREE
Water Hydrodynamic BAROCLINIC_RADIATION Check if the user wants to radiate internal tides 0 No radiation
1 Horizontal
2 Vertical
Water Hydrodynamic BAROCLINIC_WAVE_DT
Water Hydrodynamic begin_dragcoef
Water Hydrodynamic BIHARMONIC Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation
Water Hydrodynamic BIHARMONIC_COEF horizontal diffusion ocefficent used when the bi-harmonic option is on
Water Hydrodynamic BOTTOMVISC_COEF Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer
Water Hydrodynamic BOTTOMVISC_LIM Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.
Water Hydrodynamic BOTTOMWATERFLUX Checks if the user want to consider the effect of the soil infiltration or consolidation
Water Hydrodynamic BOUNDARYBAROCLINIC Check if the user wants to compute the baroclinic force in the boundary faces
Water Hydrodynamic BOUNDARYFILE The file name of 3D file where the relaxation coefficient are.
Water Hydrodynamic BOXFLUXES The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes
Water Hydrodynamic BRCORIOLIS Checks if the user wants to relax the coriolis force
Water Hydrodynamic BRFORCE
Water Hydrodynamic BRROX Checks if the user wants to relax the baroclinic force
Water Hydrodynamic BRTRANSPORT Checks if the user wants to relax the horizontal momentum transport
Water Hydrodynamic BRVELOCITY Checks if the user wants to relax the horizontal velocity
Water Hydrodynamic BRWATERLEVEL Checks if the user wants to relax the water level
Water Hydrodynamic CELERITY_TYPE
Water Hydrodynamic CENTRIFUGAL Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
Water Hydrodynamic CONSERVATIVE_HOR_DIF Check if the user wants to compute the horizontal diffusion in a conservative way.
Water Hydrodynamic CONTINUOUS Checks if the user pretends to continue a old run
Water Hydrodynamic CORIOLIS Checks if the user pretends to compute the coriolis force effect
Water Hydrodynamic CORRECT_WATERLEVEL check if the user wants to corrected the water level when it is lower than a reference water level
Water Hydrodynamic CYCLIC_BOUNDARY Check if the user wants to impose a CYCLIC boundary condition Boolean
Water Hydrodynamic CYCLIC_DIRECTION Check along which direction the user wants to impose a CYCLIC boundary condition DirectionX_ Direction x
DirectionY_ Direction Y
DirectionXY_ Directions X and Y
Water Hydrodynamic DATA_ASSIMILATION Checks if the user want to impose a flow relaxation boundary condition. By default do not use flow relaxation boundary condition Boolean
Water Hydrodynamic DEADZONE Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
Water Hydrodynamic DEADZONE_FILE Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.
Water Hydrodynamic DECAY_IN
Water Hydrodynamic DECAY_OUT
Water Hydrodynamic DISCRETIZATION Check what type of implicit discretization in time is choose for the global equations 1 Abbott Scheme - 4 equations per iteration
2 Leendertse Scheme - 6 equations per iteration
Water Hydrodynamic DT_OUTPUT_TIME
Water Hydrodynamic ENERGY Check if the user want to compute the potential and kinetic energy of the entire domain
Water Hydrodynamic ENERGY_DT
Water Hydrodynamic ENERGY_WINDOW
Water Hydrodynamic ENTERING_WAVE Checks if the wave imposed in the boundary is entering in the domain or leaving it
Water Hydrodynamic EVOLUTION Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value. No_hydrodynamic No hydrodynamic
Read_File Read File
Residual_hydrodynamic Residual hydrodynamic
Solve_Equations Solve equations
Vertical1D 1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
Water Hydrodynamic HMIN_ADVECTION The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
Water Hydrodynamic HMIN_CHEZY Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
Water Hydrodynamic HMIN_CONVECTION
Water Hydrodynamic HORIZONTALADVECTION Checks if the user pretends to compute the horizontal advection effect
Water Hydrodynamic HORIZONTALCONVECTION
Water Hydrodynamic HORIZONTALDIFFUSION Checks if the user pretends to compute the horizontal diffusion effect
Water Hydrodynamic IMPLICIT_HORADVECTION Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly
Water Hydrodynamic IMPLICIT_HORCONVECTION
Water Hydrodynamic IMPLICIT_VERTADVECTION Check if the vertical advection is implicit 0.0 Explicit
0.5 Hybrid for option in (0.0, 1.0)
1.0 Implicit
Water Hydrodynamic IMPLICIT_VERTCONVECTION
Water Hydrodynamic IMPLICIT_VERTDIFFUSION Check if the vertical advection is implicit 0.0 Explicit
0.5 Hybrid for option in (0.0, 1.0)
1.0 Implicit
Water Hydrodynamic INERTIAL_PERIODS The period after which the total effect of the baroclinic force is compute
Water Hydrodynamic INITIAL_ELEVATION Checks if the user wants to impose a initial elevation
Water Hydrodynamic INITIAL_ELEVATION_VALUE The user define with this keyword the initial elevation value
Water Hydrodynamic INITIAL_VEL_U Checks if the user pretends to impose a initial U (X) velocity
Water Hydrodynamic INITIAL_VEL_V Checks if the user pretends to impose a initial V (Y) velocity
Water Hydrodynamic INVERTED_BAROMETER_COEF The user can change the inverted barometer solution using this calibration coefficient 1 Imposed water level using the inverted barometer simplified solution
Water Hydrodynamic INVERTED_BAROMETER_REF_ATM_PRESSURE The user can also change the reference atmospheric pressure of the inverted barometer solution via this keyword 101325
Water Hydrodynamic INTERNAL_CELERITY
Water Hydrodynamic LOCAL_DENSITY Check if the user want to divide the baroclinic pressure by the local density to compute. if this option is false is used the reference density
Water Hydrodynamic LOCAL_SOLUTION Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions 1 No local solution
2 Submodel
3 AssimilationField
4 Gauge
5 AssimilaPlusSubModel
6 GaugePlusSubModel
7 AssimilaGaugeSubModel
Water Hydrodynamic MIN_COMPONENT The minimum component of the radiative wave below which the radiation process is canceled
Water Hydrodynamic MIN_VELOCITY The minimum velocity in the open boundary below which the radiation is canceled
Water Hydrodynamic MIN_WATERLEVEL reference level below which the water level is corrected.
Water Hydrodynamic MINVEL_BAROCLINIC
Water Hydrodynamic MISSING_NULL Check if the user wants to replace the missing values by zero
Water Hydrodynamic MOMENTUM_DISCHARGE Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
Water Hydrodynamic NH_ALPHA_LU
Water Hydrodynamic NH_IMPLICIT_COEF_W
Water Hydrodynamic NH_MAXIT
Water Hydrodynamic NH_NORMALIZED_RESIDUAL
Water Hydrodynamic NH_RESIDUAL
Water Hydrodynamic NONHYDROSTATIC Checks if the user want to compute the effect of local vertical acceleration over the pressure field
Water Hydrodynamic NORMAL_BAROCLINIC
Water Hydrodynamic NULL_BOUND_HORADV Checks if the user wants to assume null horizontal advection in the open boundary
Water Hydrodynamic NULL_BOUND_HORCONV
Water Hydrodynamic OBSTACLE Checks if the user want to parameterize the influence of an

OBSTACLE in the flow, giving a determined drag coefficient

Water Hydrodynamic OUTPUT_FACES Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.
Water Hydrodynamic OUTPUT_PROFILE Perform profile outputs in HDF5 format
Water Hydrodynamic OUTPUT_TIME
Water Hydrodynamic POTENTIAL_ALGORITHM
Water Hydrodynamic RADIATION Checks if the user wants to impose the Flather 1974 radiation boundary condition or other 0 No Radiation
1 FlatherWindWave_
2 FlatherLocalSolution_
3 BlumbergKantha_
Water Hydrodynamic RAMP Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
Water Hydrodynamic RAMP_START This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
Water Hydrodynamic RECORDING Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
Water Hydrodynamic REF_BOUND_WATERLEVEL
Water Hydrodynamic RELAX_REF_VEL
Water Hydrodynamic RESIDUAL Check if the user want to compute the residual flow
Water Hydrodynamic RESTART_FILE_OUTPUT_TIME Output Time to write restart files
Water Hydrodynamic RESTART_FILE_OVERWRITE Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water Hydrodynamic SLIPPING_CONDITION Checks if the user want to consider the slipping condition for horizontal diffusion
Water Hydrodynamic SLOWSTART Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplied by a coefficient that has linear evolution between 0 and 1.

By default this period is zero seconds

Water Hydrodynamic STATISTICS Checks out if the user pretends the statistics of the hydrodynamic properties
Water Hydrodynamic STATISTICS_FILE The statistics definition file of the hydrodynamic properties
Water Hydrodynamic SUBMODEL Check if the user wants to run this model as a submodel
Water Hydrodynamic SURFACEWATERFLUX Checks if the user want to consider the effect of precipitation and evaporation
Water Hydrodynamic TIDE Checks if the user pretends to impose a wave tide in the open boundary
Water Hydrodynamic TIDEPOTENTIAL Checks if the user want to consider the effect of the potential tide
Water Hydrodynamic TIME_SERIE Checks out if the user pretends to write a time serie
Water Hydrodynamic TIME_SERIE_LOCATION
Water Hydrodynamic TLAG_FILE The name file where are the relaxation times defined for the radiation boundary condition
Water Hydrodynamic TVD_METHOD_H
Water Hydrodynamic TVD_METHOD_V
Water Hydrodynamic UP_CENTER Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme 0.0 Centred differences
0.5 Hybrid for option in (0,1)
1.0 Upstream
Water Hydrodynamic VELNORMALBOUNDARY Checks the velocities the user want to impose in the exterior faces 1 null value
2 null gradient
Water Hydrodynamic VELTANGENTIALBOUNDARY Checks the velocities the user want to impose between two boundary points 1 null value
2 null gradient
Water Hydrodynamic VERTICAL_AXISYMMETRIC Checks if the user wants to simulate implicit the sea level evolution. This option only works if the flow has only one horizontal dimension. 0 ADI 0 INTEGER
1 X always implicit
2 Y always implicit
Water Hydrodynamic VERTICALADVECTION Checks if the user pretends to compute the vertical advection effect
Water Hydrodynamic VERTICALCONVECTION
Water Hydrodynamic VERTICALDIFFUSION Checks if the user pretends to compute the vertical diffusion effect
Water Hydrodynamic VMIN_CHEZY Checks the minimum velocity (Vmin_Chezy) below which the chezy coefficient is constant if the water column is smaller than Hmin_Chezy. By default Vmin_Chezy is equal to 0.10 m/s
Water Hydrodynamic VOLUME_RELATION_MAX
Water Hydrodynamic VOLUMEVARIATION Checks if the user pretends to compute the volume variation effect
Water Hydrodynamic WATER_DISCHARGES Check if the user want to water discharges
Water Hydrodynamic WATERCOLUMN2D water column thickness below which the 3D processes are disconnected
Water Hydrodynamic WATERLEVEL_MAX_MIN Computes the spatial maps of the maximum and of the minimum water elevation.
Water Hydrodynamic WAVE_DIRECTION The user with this keyword give a direction to a wave entering the domain
Water Hydrodynamic WAVE_STRESS Checks if the user want to consider the effect of the waves stress. By default the waves stress is not compute
Water Hydrodynamic WIND Checks if the user want to consider the effect of the wind stress. By default the wind stress is not computed 0 No wind forcing
1 wind forcing
2 wind forcing with a smooth start
Water Hydrodynamic WIND_SMOOTH_PERIOD The user specify the wind smooth period

Module HydrodynamicFile

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water HydrodynamicFile BAT_INTEGRATION_TYPE It is possible to calculate the new bathymetry (spacial integration) using two different options MaxVal_Type Each new integrated cell has the maximum value of the cells used to do the integration of that cell
MeanVal_Type The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.
Water HydrodynamicFile DT_HYDROFILE Time Step of the hydrodynamic file
Water HydrodynamicFile IN_FIELD Input File Name
Water HydrodynamicFile IN_FILE_TYPE Input File Type BeginEnd_type
Water HydrodynamicFile M2_Tide_type
Water HydrodynamicFile IN_FILE_VERSION Input File Version 1 Only available if LOAD_TO_MEMORY = 0
2
Water HydrodynamicFile LOAD_TO_MEMORY Load all information to memory
Water HydrodynamicFile N_ITEGRATION_CELLS Number of cells that will be integrated (the integration space step)
Water HydrodynamicFile NEW_BATIM Gets the name of the new bathymetry
Water HydrodynamicFile OUT_FIELD Ouput Data File
Water HydrodynamicFile OUT_FILE_VERSION Controls the version of the output file 1
2
Water HydrodynamicFile SPACE_INTEGRATION Verifies if the integration of fluxes in space is to be done
Water HydrodynamicFile TIME_INTEGRATION Performs an integration in time,
Water HydrodynamicFile WINDOW It is possible to define a window inside a bathymetry, where we want to record values to the hydrodynamic file

Module InterfaceSedimentWater

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water InterfaceSedimentWater BEGIN_DIFF_COEF
Water InterfaceSedimentWater BENTHOS Compute property benthic ecological processes
Water InterfaceSedimentWater BOX_TIME_SERIE Outputs property results in box time series
Water InterfaceSedimentWater BOXFLUXES Path to boxes file. If specified in input data file, computes box integration based on the defined file.
Water InterfaceSedimentWater CEQUALW2 Compute property CEQUALW2 benthic ecological processes
Water InterfaceSedimentWater CONSOLIDATION Activates consolidation processes as well as erosion from consolidated sediment compartment
Water InterfaceSedimentWater DEPOSITION Compute property deposition
Water InterfaceSedimentWater DESCRIPTION Brief description of the property
Water InterfaceSedimentWater DESCRIPTION Description of the rate to perform output
Water InterfaceSedimentWater DETRITUS Compute property as detritus
Water InterfaceSedimentWater EROSION Compute property erosion
Water InterfaceSedimentWater FIRSTPROP Name of the first property involved in the rate
Water InterfaceSedimentWater MASS_LIMITATION Property mass is finite
Water InterfaceSedimentWater MASS_MIN Minimum mass allowed for the property if MASS_LIMITATION is on. Values of zero are allowed.
Water InterfaceSedimentWater NAME Name of the property
Water InterfaceSedimentWater NAME Name of the rate to perform output
Water InterfaceSedimentWater OLD Initialization is made based on previous run (overrides FillMatrix keywords)
Water InterfaceSedimentWater OUTPUT_HDF Outputs property results in HDF5 format
Water InterfaceSedimentWater OUTPUT_SHEAR_STRESS Output shear stress in HDF format
Water InterfaceSedimentWater OUTPUT_TIME Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water InterfaceSedimentWater PARTICULATE Property physical state: 0 - Dissolved; 1 - Particulate
Water InterfaceSedimentWater REFERENCE_DEPTH Reference depth below which shear stress is limited. Keyword is only read if SHEAR_STRESS_LIMITATION is on.
Water InterfaceSedimentWater REFERENCE_SHEAR_STRESS Shear stress value assumed in limited cells when SHEAR_STRESS_LIMITATION is on
Water InterfaceSedimentWater RESTART_FILE_OUTPUT_TIME Output Time to write restart files
Water InterfaceSedimentWater RESTART_FILE_OVERWRITE Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water InterfaceSedimentWater SAND_TRANSPORT Compute sand tranport
Water InterfaceSedimentWater SECONDPROP Name of the second property involved in the rate
Water InterfaceSedimentWater SEDIMENT_FLUXES Compute property fluxes between interface sediment-water and sediment column
Water InterfaceSedimentWater SEDIMENT_WATER_FLUXES Compute property fluxes between sediment and water column
Water InterfaceSedimentWater SHEAR_STRESS_LIMITATION Limit shear stress values in shallow zones
Water InterfaceSedimentWater STATISTICS_SHEAR Perform statistics to shear velocity
Water InterfaceSedimentWater STATISTICS_SHEAR_FILE Path to statistics input data file. Only read if STATISTICS_SHEAR is on.
Water InterfaceSedimentWater TIME_SERIE Outputs property results in time series
Water InterfaceSedimentWater TIME_SERIE_LOCATION Path to time serie locations file
Water InterfaceSedimentWater UNITS Property units
Water InterfaceSedimentWater WATER_FLUXES Compute property fluxes to/from water column
Water InterfaceSedimentWater WAVETENSION Compute wave induced shear stress

Module Jet

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Jet BOTTOM_SALINITY ambient bottom salinity when a LINEAR water column is admitted
Water Jet BOTTOM_TEMPERATURE ambient bottom temperature when a LINEAR water column is admitted
Water Jet BOTTOM_VELU ambient bottom velocity U when a LINEAR water column is admitted
Water Jet BOTTOM_VELV ambient bottom velocity V when a LINEAR water column is admitted
Water Jet DEFAULT_SALINITY ambient salinity when a UNIFORM water column is admitted
Water Jet DEFAULT_TEMPERATURE ambient temperature when a UNIFORM water column is admitted
Water Jet DEFAULT_VELU ambient velocity U when a UNIFORM water column is admitted
Water Jet DEFAULT_VELV ambient velocity V when a UNIFORM water column is admitted
Water Jet DT_OUTPUT Time interval between outputs
Water Jet INITIAL_TRACER_CONCENTRATION Initial concentration of generic tracer
Water Jet LAGRANGIAN
Water Jet LOCAL_TYPE Methodology to define the ambient variables FIELD3D 3D field generated by the MOHID system
LINEAR Water column where the density and velocity have a linear profile
UNIFORM Uniform water column
Water Jet MAX_DT Maximum time step interval
Water Jet MAX_DV Maximum volume variation between time steps
Water Jet MAX_PLUME_DIAMETER Plume diameter from which initial dilution stops. This value is used to simulate the jets overlapping
Water Jet OUTFALL_ANGLE Outfall angle
Water Jet OUTFALL_LENGTH Outfall length
Water Jet OUTPUT_TYPE The output can be made given the exact information in specific output times or a cloud of particles for each output time
Water Jet PARAMETERIZATION Parametrization used to simulate the entrainment process CORJET Parameterization based on CORJET model
JETLAG Parameterization based on JETLAG model
Water Jet PARTICLES_NUMBER In case of OUTPUT_TYPE = CLOUD this is the number of output tracer per output time interval
Water Jet PORT_ANGLE_HZ Port vertical angle
Water Jet PORT_ANGLE_XY Port horizontal angle
Water Jet PORT_BOTTOM_DISTANCE Port distance from the bottom
Water Jet PORT_DIAMETER Diameter of each port
Water Jet PORTS_NUMBER Number of Ports
Water Jet RUN_MAX_PERIOD Maximum run period
Water Jet RUN_MIN_PERIOD Minimum run period
Water Jet SEDIMENT_COLUMN
Water Jet SURFACE_SALINITY ambient surface salinity when a LINEAR water column is admitted
Water Jet SURFACE_TEMPERATURE ambient surface temperature when a LINEAR water column is admitted
Water Jet SURFACE_VELU ambient surface velocity U when a LINEAR water column is admitted
Water Jet SURFACE_VELV ambient surface velocity V when a LINEAR water column is admitted
Water Jet WAVES

Module Lagrangian

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Lagrangian ACCIDENT_METHOD How to distribute initially the particles if the emission type is accident 1 The "Fay" option
2 The "Thickness" option
Water Lagrangian ACCIDENT_TIME Time when the accident occur.

By default is equal to the model start time

Water Lagrangian ADVECTION Move Particle due to horizontal velocity.
Water Lagrangian AMBIENT_CONC Ambient concentration.
Water Lagrangian ASSOCIATE_BEACH_PROB Checks if the user want to associate beaching probability to the particles
Water Lagrangian BEACHING
Water Lagrangian BEACHING_BOX_FILENAME Link to the data file which contains the definition of the boxes used for defining the beaching probability.
Water Lagrangian BEACHING_LIMIT Maximum distance between particles and coast for particle beaching
Water Lagrangian BOTTOM_DISTANCE Distance from bottom below which the tracer can sediment.
Water Lagrangian BOTTOM_EMISSION Checks if the tracers are emited from the bottom.
Water Lagrangian BOX_NUMBER Number of box to associate to origin.
Water Lagrangian BOXES_BEACHING_PROB List of Inbox Beaching Probability.
Water Lagrangian BOXVOLINIC Initial Volume of a particle in the box.
Water Lagrangian COEF_INITIAL_MIXING Coefficient use to control volume increase due to initial mixing
Water Lagrangian COMPUTE_AGE This logical option allows to compute the age of each tracer.
Water Lagrangian COMPUTE_BUOYANCY Computes Particle vertical velocity evolution due to density gradients
Water Lagrangian COMPUTE_PLUME Computes Particle Plume due density gradients
Water Lagrangian CONC_COLUMN Column of the time serie input where is defined a variable concentration.
Water Lagrangian CONC_VARIABLE Check if the user wants a variable concentration.
Water Lagrangian CONCENTRATION Concentration of the property.
Water Lagrangian D50
Water Lagrangian DEFAULT_BEACHING_PROB The probability a particle "beaches" when beaching is enabled
Water Lagrangian DENSITY_METHOD Formula to calculate particle density 1 Leendertse
2 UNESCO
3 Constant
Water Lagrangian DEPOSITION Checks if the tracers can deposited.
Water Lagrangian DEPTH_CELLS Depth in Cells (from bottom)
Water Lagrangian DEPTH_METERS Depth of emission relativ to surface.
Water Lagrangian DISCHARGE_FILE A Link to the data file whichs contains the time serie of the variable flow
Water Lagrangian DT_EMIT The interval between emissions. By default this value is equal to DT_PARTIC
Water Lagrangian DT_PARTIC Particle Time Step
Water Lagrangian EMISSION_SPATIAL Type of spatial emission. Accident Emission as accident
Box Emission from a Box
Point Emission at a single point
Water Lagrangian EMISSION_TEMPORAL Type of temporal emission Continuous Continuous emission
Instantaneous Instantaneous emission
Water Lagrangian EROSION_RATE Rate of tracers erosion.
Water Lagrangian EULERIAN_MONITOR Path to a boxes file to integrate eulerian concentrations based on lagrangian tracers
Water Lagrangian EXTINCTION_PARAMETER This property has an extinction parameter. This parameter can be use

to compute the effect of this property in the light extinction

Water Lagrangian FLOAT Indicates if the particle is a floating particle (e.g. oil)
Water Lagrangian FLOW The flow of the point emission
Water Lagrangian FLOW_COLUMN The data column of the flow values which define the time serie of the variable flow
Water Lagrangian FLOW_VARIABLE Checks if the flow of the point emission is variable DT
Water Lagrangian GROUP_ID The Group ID to which the origin belongs
Water Lagrangian INCRP Increment of grid cells to fill Boxes.
Water Lagrangian JET_DATA_FILE Link to the data file which contains the Plume / Jet parameterizations
Water Lagrangian JET_DT Time interval for the actualization of Plume Jet properties
Water Lagrangian KILL_LAND_PARTICLES Kills particles which are located in a Waterpoint which is not a OpenPoint
Water Lagrangian MAINTAIN_RELATIVE_POSITION Check is the user wants to maintain

the vertical relative position of the origin

Water Lagrangian MIN_CONCENTRATION
Water Lagrangian MIN_SED_VELOCITY Minimum Sedimention velocity.
Water Lagrangian MONITOR_BOX Link to the data file which contains the definition of the boxes used for particle "monitoring" (Residence Time)
Water Lagrangian MONITOR_BOX_PROP_MASS Name of property to monitor mass in a box
Water Lagrangian MOVEMENT Type of particle aleatory horizontal movement NotRandom Do not consider any aleatory horizontal component
SullivanAllen Parameterization based on Sullivan Allen formulation
Water Lagrangian MOVING_ORIGIN Checks if the Origin has a moving location
Water Lagrangian MOVING_ORIGIN_COLUMN_X The data column in which the X position values are given
Water Lagrangian MOVING_ORIGIN_COLUMN_Y The data column in which the Y position values are given
Water Lagrangian MOVING_ORIGIN_FILE A Link to the data file which contains the time serie of the position of the origin
Water Lagrangian MOVING_ORIGIN_UNITS Units in which the moving origin position is given Meters The units are meters
Cells The units are given as cells
Water Lagrangian NAME Name of the property.
Water Lagrangian NBR_PARTIC Number of Particles in each emission.
Water Lagrangian NOWQM To compute age without running moduleWQM.
Water Lagrangian OLD If the computation of this origin is continued from a previous run
Water Lagrangian ORIGIN_NAME Name of the Origin. Origin Names must be unic.
Water Lagrangian OUTPUT_CONC Output Integration Type 1 Uses maximum values for integration
2 Uses average values for integration
Water Lagrangian OUTPUT_MAX_TRACER Checks if the users wants to output the maximum tracer concentration in each cell
Water Lagrangian OUTPUT_TIME Output Time
Water Lagrangian OVERLAY_VELOCITY Checks if the user wants to add an aditional velocity to the particles
Water Lagrangian PARTIC_BOX Link to the data file which contains the definition of the boxes used for particle emission
Water Lagrangian PARTITION_COEF_SED Partition coefficent in the sediment.
Water Lagrangian PARTITION_COEF_WATER Partition coefficient in the water column.
Water Lagrangian PARTITION_COUPLE_SED Concentration of the dissolved phase in the intersticial water. The dissolved phase is admitted with a constant concentration.
Water Lagrangian PARTITION_COUPLE_WATER Concentration of the dissolved phase. The dissolved phase is admitted with a constant

concentration

Water Lagrangian PARTITION_RATE_SED Rate of transfer between the two phases.
Water Lagrangian PARTITION_RATE_WATER Rate of transfer between the two phases.
Water Lagrangian PARTITION_SED Checks if the tracers has two phases

(adsorbe and dissolved) in the sediment

Water Lagrangian PARTITION_WATER Checks if the tracers has two phases

(adsorbe and dissolved) in the water column.

Water Lagrangian POINT_VOLUME Volume of instantanous emission
Water Lagrangian POSITION_CELLS X and Y Position of the origin in grid cells.
Water Lagrangian POSITION_METERS X and Y Position of the origin in meters.
Water Lagrangian RESTART_FILE_OUTPUT_TIME Output Time to write restart files
Water Lagrangian RESTART_FILE_OVERWRITE Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water Lagrangian SED_VELOCITY Sedimentation Velocity.
Water Lagrangian SEDIMENTATION Sedimentation type. Imposed
Stokes
Water Lagrangian SPLIT_PART Split big particles.
Water Lagrangian START_PARTIC_EMIT The Start Time of the continuous emission. By default is equal to the model start time.
Water Lagrangian STATISTICS Wheter to calculate or not the statistic.
Water Lagrangian STATISTICS_FILE File name with the statistics definition.
Water Lagrangian STATISTICS_LAG Do a frequency analysis tracer by tracer.
Water Lagrangian STOP_PARTIC_EMIT The Stop Time of the continuous emission. By default is equal to the model end time.
Water Lagrangian T90 Coliform Decay rate.
Water Lagrangian T90_VAR_METHOD_1 Method to compute T90 function. 1 Fecal decay according to Canteras et al. (1995)
2 Fecal decay according to Chapra (1997)
Water Lagrangian T90_VARIABLE Check if the user wants to compute T90 function of ambient properties: salinity,temperature,light.
Water Lagrangian TAU_DEP Critical shear stress of deposition.
Water Lagrangian TAU_ERO Critical shear stress of erosion.
Water Lagrangian THEORIC_AREA Uses Theoric Area for Oil Processes.
Water Lagrangian THICKNESS_METERS The initial thickness of the particles. (For floating particle only). (Used to calculate the area if the emission is accident and the total number of particles if the emission is box)
Water Lagrangian TIME_DECAY Decay time is used to compute a relxation term that makes the critical shear stress of erosion tend to the average tracer erosion rate of the cell where the tracer is deposited.
Water Lagrangian TIME_SERIE Checks if the user wants to write time series of the particle properties
Water Lagrangian TIME_SERIE_LOCATION Gets the position of the water points in the Map Module.
Water Lagrangian TURB_V Vertical turbulence parameterization Constant Constant Parameterization
Profile Parameterization based on the velocity profile
Water Lagrangian TVOL200 Time needed for a particle to double volume.

Turns particles volume variation on.

Water Lagrangian UNITS Units of the property.
Water Lagrangian VARVELH Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
Water Lagrangian VARVELHX Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelHX * Vel + VarVelH
Water Lagrangian VARVELV Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
Water Lagrangian VARVELVX Definition of the Horizontal and Vertical variance in the form of a percentage of the average velocity UStandardDeviation = VarVelVX * Vel + VarVelV
Water Lagrangian VISCCINREF
Water Lagrangian VOLFAC Factor which indicates when a particle with variable volume is to be deleted (Volume > Initial Volume * VOLFAC)
Water Lagrangian VOLUME_INCREASE How volume increase is calculated Double The doublication occur after the time given by TVOL200
Velocity The doublication occur after the time given by TVOL200, but also depends on the local velocity
Water Lagrangian WINDCOEF Wind transfer Coefficient
Water Lagrangian WINDXY If this keyword is defined than the wind velocity defined in the atmosphere module is override and the wind use by the tracers is this one
Water Lagrangian WQM_DATA_FILE Location of the File defining the Water Quality configuration.

Module Model

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Model OPENMP_NUM_THREADS Sets the number of threads to use with openmp.
Land Model SYNC_DT Provide results at the exacts time 0/1 Inactive/Active 0 Boolean

Module Oil

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Oil API American Petroleum Institute (API) Gravity
Water Oil ASPHALTENECONTENT Asphaltene Content
Water Oil CEMULS Emulsification Constant ((% of evaporated oil before emulsification brgins)
Water Oil CPDISTEXP Cumulative Volume Fraction of Oil Distilled
Water Oil DISPERSIONMETHOD Method for Dispersion Delvigne Dispersion parameterized with Delvigne formulation
Mackay Dispersion parameterized with Mackay formulation
Water Oil DT_OIL_INTPROCESSES Time Step used in computation of oil internal processes
Water Oil EFFICIENCY % of Area sprayed effectively dispersed
Water Oil EMULSIFICATIONMETHOD Method for Emulsification Mackay Emulsification parameterized following Mackay formulation
Rasmussen Emulsification parameterized following Rasmussen formulation
Water Oil EmulsParameter Water Uptake Parameter
Water Oil END_CHEM_DISPERSION Ending Time of Dispersant Application
Water Oil END_MEC_CLEANUP Ending Time of Mechanical Cleanup Operation
Water Oil EVAPORATIONMETHOD Method for Evaporation EvaporativeExposure Evaporation computed with evaporative exposure method
Fingas Evaporation computed with Fingas formulations
PseudoComponents Evaporation computed with pseudocomponents method
Water Oil FINGAS_EVAP_CONST1 Fingas Empirical Constant 1 (Necessary If Fingas_Evap_Emp_Data = 1)
Water Oil FINGAS_EVAP_CONST2 Fingas Empirical Constant 2 (Necessary If Fingas_Evap_Emp_Data = 1)
Water Oil FINGAS_EVAP_EMP_DATA Knowledge of Empirical Data for Evaporation
Water Oil FINGAS_EVAP_EQTYPE Evaporation Equation Type Logarithmic Logarithmic Equation Type for Evaporation
SquareRoot Square Root Equation Type for Evaporation
Water Oil MAXVWATERCONTENT Maximum Volume Water Content
Water Oil NBRDISTCUTS Number of Distillation Cuts
Water Oil OIL_CHEM_DISPERSION Computes Chemical Dispersants Application
Water Oil OIL_DISPERSION Computes Oil Dispersion Process
Water Oil OIL_DISSOLUTION Computes Oil Dissolution Process
Water Oil OIL_EMULSIFICATION Computes oil emulsification process
Water Oil OIL_EVAPORATION Computes Oil Evaporation Process
Water Oil OIL_MEC_CLEANUP Computes Mechanical Cleanup Operation
Water Oil OIL_SEDIMENTATION Computes Oil Sedimentation Process
Water Oil OIL_SPREADING Computes Oil Spreading Process
Water Oil OIL_TIMESERIE Name of the Output results file
Water Oil OILTYPE Oil Type Crude Crude Oil
Refined Refined oil
Water Oil OWINTERFACIALTENSION Oil-Water Interfacial Tension
Water Oil P_AREA_SPRAYED % of Spill Area sprayed whit dispersant
Water Oil PERC_MASSDIST180 %(Wheight) of Oil Evaporated until 180ºC (Necessary If Fingas_Evap_Emp_Data = 0)
Water Oil POURPOINT Pour Point
Water Oil RECOVERY rate or volume of Emulsion Recovered
Water Oil RECOVERY_DATAFORM DataForm of emulsion recovered
Water Oil SPREADINGMETHOD Method for Spreading Fay Mechanical spreading simply based on Fay theory
ThicknessGradient Oil mechanical spreading based on thickness gradients, parameterised with fay theory
Water Oil START_CHEM_DISPERSION Starting Time of Dispersant Application
Water Oil START_MEC_CLEANUP Starting Time of Mechanical Cleanup Operation
Water Oil TDISTEXP Vapour Temperature of Distillate
Water Oil TEMPVISCREF Temperature of Reference Viscosity
Water Oil USERCOEFVELMANCHA Empirical Thickness Gradient's Spreading Velocity Coefficient
Water Oil VISCCINREF Reference Cinematic Viscosity
Water Oil VISCREF Reference Dynamic Viscosity
Water Oil WAXCONTENT Wax Content

Module Sand

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Sand BATHYM_EVOLUTION it´s a conditional keyword: check if the user wants to let the bathymetry evolve due to sand transport
Water Sand BATIM_DT The time step of the BATIM evolution
Water Sand BOUNDARY check what type off boundary condition the user wants: 1 -> NullGradient, 2 -> Cyclic
Water Sand BOX_FILENAME path to the file where the boxes are defined
Water Sand BOXFLUXES It´s a conditional keyword to compute fluxes between boxes
Water Sand CLASS_ID ??
Water Sand CLASS_NAME ??
Water Sand CLASSES_NUMBER The number of sand classes the user wants to define
Water Sand CRITICAL_SLOP slope above which there is lateral erosion.
Water Sand DENS_SAND Sand density
Water Sand DISCHARGES ??
Water Sand FILTER_RADIUS
Water Sand FILTER_SCHEME the keyword can be equal to NO FILTER or MODIFY LAX.
Water Sand FLUX_SLOP ??
Water Sand OLD it´s a conditional keyword: check if the user wants to start from the final condition of a previous run
Water Sand OUTPUT_TIME output time step
Water Sand POROSITY porosity of the sediments
Water Sand SAND_DT The time step of the SAND evolution
Water Sand SAND_MIN The minimum sand layer thickness
Water Sand SMOOTH_SLOP it´s a conditional keyword: check if the user wants to compute transport in strong slopes
Water Sand TAU_MAX the maximum bottom shear stress
Water Sand TIME_SERIE it´s a conditional keyword: checks out if the user pretends to write a time serie for the transport fluxes
Water Sand TIME_SERIE_LOCATION path to the file where the boxes are defined
Water Sand TRANSPORT_FACTOR it´s a factor to amplify the transport
Water Sand TRANSPORT_METHOD Methodology use to compute the sand transport

Module SedimentProperties

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water SedimentProperties ADVECTION_DIFFUSION Compute property advection-diffusion
Water SedimentProperties BIOTURBATION Compute bioturbation processes
Water SedimentProperties BIOTURBATION_COEF Bioturbation diffusion coefficient
Water SedimentProperties BIOTURBATION_DECAY_COEF Decay factor to compute decay of bioturbation effect
Water SedimentProperties BIOTURBATION_DEPTH Depth till which bioturbation diffusion is constant (m)
Water SedimentProperties BOX_TIME_SERIE Ouputs results in box time series
Water SedimentProperties BOXFLUXES Path to boxes file. If specified in input data file, computes box integration based on the defined file.
Water SedimentProperties DESCRIPTION Brief description of the property
Water SedimentProperties DIFFUSION_METHOD Method to compute diffusion coefficient correction for the sediments 1 Berner, 1980
2 Soetaert, 1996
Water SedimentProperties IS_COEF Conversion factor to I.S. units
Water SedimentProperties MIN_VALUE Minimum allowed value of property concentration
Water SedimentProperties MOLECULAR_DIFF_COEF Infinite dilution molecular diffusion coefficient
Water SedimentProperties NAME Property name
Water SedimentProperties OLD Initialization from previous run (overrides FillMatrix)
Water SedimentProperties OUTPUT_HDF Ouputs results in HDF5 format
Water SedimentProperties OUTPUT_TIME Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
Water SedimentProperties PARTICULATE Property physical state: 0 - Dissolved ; 1 - Particulate
Water SedimentProperties PARTITION Compute partition between dissolved-particulate phases
Water SedimentProperties PARTITION_COUPLE Name of the property (oposite phase) to compute partition
Water SedimentProperties SEDIMENT_QUALITY Compute sediment quality processes
Water SedimentProperties SURFACE_FLUXES Compute fluxes at the sediment surface
Water SedimentProperties TIME_SERIE Output time series for sediment property
Water SedimentProperties TIME_SERIE_LOCATION Path to time serie locations file
Water SedimentProperties UNITS Property units

Module Turbine

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Turbine CD Drag coef for the structure Not yet implemented
Water Turbine CP Power coefficient value. Power coefficient that quantifies the amount of power extracted from the flow 0-1 percentage between 0 and 1 Real
Water Turbine CT Thrust coefficient value. Power coefficient that quantifies the forced exerted by the turbine to the flow 0-1 percentage between 0 and 1 Real
Water Turbine DIAMETER Device diameter length m Real
Water Turbine HEIGHT The heigh of the centre of the turbine respect the floor m Real
Water Turbine LOWER_VEL Cut-in speed. The minimum speed at which the device starts working 0 m/s Real
Water Turbine POS_LAT Latitude position in geographic coordinates or y position in metric coordinates. Real
Water Turbine POS_LONG Longitude position in geographic coordinates and x position in metric coordinates. Real
Water Turbine TIMESERIE Activates the timeserie module and prints the output data of the turbine 0/1 activates the ouput data Boolean
Water Turbine UPPER_VEL Design speed. 10 m/s Real
Water Turbine WIDTH_STRUCT Width of the structure Not yet implemented

Module Turbulence

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Turbulence BACKGROUND_VISCOSITY Background viscosity/diffusivity.
Water Turbulence CONST_MIXING_LENGTH_HORIZONTAL Default horizontal mixing length. Used to compute the random trajectory of particle (Lagrangian Module
Water Turbulence CONTINUOUS Check if the user wants to perform a simulation startinf from a previous run (1) or not (0).
Water Turbulence DT_OUTPUT_TIME Time interval for time serie.
Water Turbulence HORCON Smaagorinsky coefficient. Used only if MODVISH is "smagorinsky".
Water Turbulence HREF_VIS Water column reference thickness used in the for the option MODVISH "estuary".
Water Turbulence MIXLENGTH_MAX Maximum allowed mixing length. Parameter used in the Nihoul and Leendertse parameterization.
Water Turbulence MIXLENGTH_V Default vertical mixing length. Used to compute the random trajectory of particle (Lagrangian Module).
Water Turbulence MLD Checks out if the user pretends to compute the mixed layer length (1) or not (0).
Water Turbulence MLD_BOTTOM Checks out if the user pretends to compute the bottom mixed layer length (1) or not (0).
Water Turbulence MLD_Method 1 Turbulent kinetic energy (TKE) inferior to a predefined minimum.
2 Richardson number (Ri) superior to a critical value.
3 Maximum value of Brunt-Vaisalla frequency (N)
Water Turbulence MODTURB Vertical eddy viscosity model backhaus Uses Backhaus turbulence scheme.
constant Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing.
file2D Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
leendertsee Uses Leendertsee turbulence scheme.
nihoul Uses Nihoul turbulence scheme.
pacanowski Uses Pacanowski turbulence scheme.
turbulence_equation Uses a turbulence equation for closure. This is only to be used with GOTM module.
Water Turbulence MODVISH Horizontal eddy viscosity model. constant Constant horizontal viscosity
estuary
file2D Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
smagorinsky Smagorinsky turbulence scheme.
Water Turbulence NYQUIST Nyquist frequency used for mixing length calculation.
Water Turbulence OUTPUT_PROFILE Perform profile outputs in HDF5
Water Turbulence OUTPUT_TIDE Checks out if the user pretends to write tidal information in HDF output (1) or not (0).
Water Turbulence OUTPUT_TIME Intrevals of time between outputs.
Water Turbulence PRANDTL_0 Vertical Prandtl number
Water Turbulence RESTART_FILE_OVERWRITE Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water Turbulence RICH_MLD Ri used to compute the surface mixing length based on the Ri number.
Water Turbulence STATISTICS_MLD Checks out if the user pretends to output statics for the surface mixing length (1) or not (0).
Water Turbulence STATISTICS_MLD_FILE File name for output statistics of surface mixing length.
Water Turbulence TIME_SERIE Checks out if the user pretends to write time series of this property (1) or not (0).
Water Turbulence TIME_SERIE_LOCATION Path to time serie location file
Water Turbulence TKE_MLD TKE limit used to compute the surface mixing length based on the TKE.
Water Turbulence VISCOSITY_H Default horizontal viscosity.
Water Turbulence VISCOSITY_V Default vertical viscosity.
Water Turbulence VISH_REF Horizontal viscosity used as the minimum value for viscosity if MODVISH is either "estuary" or

"smagorinsky".

Water Turbulence VREF_VIS Reference velocity used if MODVISH is "estuary".

Module WaterProperties

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water WaterProperties ADV_DIF_NUM_STABILITY Verifies advection-diffusion numerical stability for this property.
Water WaterProperties ADV_METHOD_H Horizontal advection discretization. 1 UpwindOrder1
2 UpwindOrder2
3 UpwindOrder3
4 P2_TVD
5 CentralDif
Water WaterProperties ADV_METHOD_V Vertical advection discretization. 1 UpwindOrder1
2 UpwindOrder2
3 UpwindOrder3
4 P2_TVD
5 CentralDif
Water WaterProperties ADVECTION_DIFFUSION Property transported by advection and diffusion.
Water WaterProperties ADVECTION_H_IMP_EXP Horizontal advection computed using a implicit/explicit discretization for this property. 0 Implicit discretization
1 Explicit discretization
Water WaterProperties ADVECTION_V_IMP_EXP Vertical advection computed using a implicit/explicit discretization for this property. 0 Implicit discretization.
1 Explicit discretization.
Water WaterProperties AGE_USING_WATERPOINTS Compute age using Waterpoints. If FALSE then age is computed using Openpoints.
Water WaterProperties ALTITUDE
Water WaterProperties BOTTOM_FLUXES This property has bottom fluxes
Water WaterProperties BOUNDARY_CONDITION Boundary condition for this property. 1 MassConservation
2 ImposedValue
3 VerticalDiffusion
4 NullGradient
5 SubModel
6 Orlanski
7 MassConservation + NullGradient
8 CyclicBoundary
Water WaterProperties BOUNDARY_INITIALIZATION Processes considered to initialize the boundary values of this property EXTERIOR A value exterior to the domain is be imposed (a constant value).
INTERIOR Boundaries equal to the values given

in the same cells during the domain initialization.

Water WaterProperties BOX_TIME_SERIE Checks to see if the user pretends to write a time serie inside each box for this property
Water WaterProperties BOXFLUXES Path to the file with the boxes definitions.
Water WaterProperties CEQUALW2 This property has CEQUALW2 model as a sink and source
Water WaterProperties DATA_ASSIMILATION Data assimilation scheme
Water WaterProperties DECAY_TIME Decay time of this property in the boundary. 0 Property value at the boundary remains constant.
Water WaterProperties DEFAULTBOUNDARY The default value of a specific water property imposed in the open boundary
Water WaterProperties DENSITY_METHOD Method to compute water density 1 Leendertse
2 UNESCO (in situ temperature)
3 Linear
4 Mellor 1996
5 Jackett and McDougall 1995
Water WaterProperties DESCRIPTION Description of this property
Water WaterProperties DIFFUSION_V_IMP_EXP Vertical diffusion computed using a implicit/explicit discretization for this property. 0 Implicit discretization.
1 Explicit discretization.
Water WaterProperties DISCHARGES Property is discharged.
Water WaterProperties DISCHARGES_TRACKING This property writes discharges as time serie
Water WaterProperties DOSAT_TYPE Method to compute dissolved oxygen saturation 1 Apha
2 Henry
3 Mortimer
Water WaterProperties DT_INTERVAL DT to compute this property evolution.

Only defined if no advection_difusion or sink and source model chosen

Water WaterProperties EMPIRIC_COEF
Water WaterProperties EXTINCTION_PARAMETER Parameter that multiplies by this property concentration to compute light extinction when SW_EXTINCTION_TYPE:6 (multiparameter option)
Water WaterProperties FILTRATION Compute filtration process as a sink
Water WaterProperties FIRSTPROP First Property defined in a WQ rate relation
Water WaterProperties FREE_CONVECTION Option to mix instable density profiles
Water WaterProperties INSTANT_MIXING This option mix instantaneously the all water column for this property
Water WaterProperties IS_COEF Conversion factor between IS units and the user defined units for this property
Water WaterProperties LIFE This property has Life model as a sink and source
Water WaterProperties LIGHT_EXTINCTION Check if this property is used to compute light extinction when SW_EXTINCTION_TYPE : 6 (multiparameter)
Water WaterProperties MACROALGAE Defines if property is included in macroalgae biogeochemical processes
Water WaterProperties MACROALGAE_HEIGHT Macroalgae reference height
Water WaterProperties MACROALGAE_MASS Initial distribution of macroalgae attached to the bottom
Water WaterProperties MAX_VALUE Maximum allowed value of property concentration
Water WaterProperties MIN_VALUE Mininum value of this property
Water WaterProperties MODEL Name of the biogeochemical to which the rate belongs
Water WaterProperties NAME Name of this property
Water WaterProperties NAME Rate name ex: PhyZoo
Water WaterProperties NULLDIF Consider null diffusion of this property if velocities are null.
Water WaterProperties OLD Check if user wants to continue the run with results of a previous run.
Water WaterProperties OUTPUT_HDF Check to see if this property is to be written in the HDF file.
Water WaterProperties OUTPUT_PROFILE Perform profile outputs in HDF5 format
Water WaterProperties OUTPUT_TIME Output times for HDF output file
Water WaterProperties PARTICULATE Checks if the user wants this property to be particulate
Water WaterProperties PARTITION This property has partition as a sink and source
Water WaterProperties PARTITION_COUPLE Name of property (dissolved/particulated) to couple this property
Water WaterProperties PARTITION_FRACTION
Water WaterProperties PARTITION_RATE
Water WaterProperties PRESSURE_CORRECTION Check to see if Pressure correction is going to be computed.
Water WaterProperties RATIO_C_CHLA Plankton Carbon/Chlorophyll Ratio
Water WaterProperties REFERENCE_DENSITY Reference water density
Water WaterProperties REFERENCE_SPECIFICHEAT Specific heat reference of water. seawater in GOTM - 3985 J/kg/ºC

Freshwater in Chapra - 4180 J/kg/ºC

Water WaterProperties RESTART_FILE_OUTPUT_TIME Output Time to write restart files
Water WaterProperties RESTART_FILE_OVERWRITE Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
Water WaterProperties SALINITY_EFFECT Compute partition coefficient between the particulate and the dissolved phase as a function of salinity, for this property
Water WaterProperties SCHMIDT_BACKGROUND_V see SCHMIDT_COEF_V.
Water WaterProperties SCHMIDT_COEF_V Schmidt number for the vertical.
Water WaterProperties SCHMIDT_NUMBER_H Schmidt number for the horizontal.
Water WaterProperties SECONDPROP Second property defined in a WQ rate relation
Water WaterProperties SED_REF_CONC Reference cohesive sediment concentration to use in this property
Water WaterProperties SIMPLE_OUTPUT HDF outputs include only the basic properties 0/1 Inactive/Active 1 Boolean
Water WaterProperties SIMPLE_WINDOW_OUTPUT HDF window outputs include only the basic properties 0/1 Inactive/Active 1 Boolean
Water WaterProperties SMALLDEPTH_LIMIT Water column thickness below which homogeneous water properties is assumed.
Water WaterProperties SPECIFICHEAT_METHOD Method for Specific Heat 2 Uses the UNESCO state equation described in Millero et al. 1978
Water WaterProperties 3 Uses the referenced value
Water WaterProperties STATISTICS Checks to see if the user pretends the statistics of this property
Water WaterProperties STATISTICS_FILE Path to the file that has the statistics definitions
Water WaterProperties SUBMODEL Property is influenced by a father model
Water WaterProperties SUBMODEL_INI Property is initialized as being part of a sub model
Water WaterProperties SURFACE_FLUXES This property has surface fluxes
Water WaterProperties TIME_SERIE Check to see if this property is to be written as time series.
Water WaterProperties TIME_SERIE_LOCATION Path to the file that as time series definitions
Water WaterProperties TVD_LIMIT_H Horizontal TVD limitation 1 MinMod
2 VanLeer
3 Muscl
4 Superbee
5 PDM
Water WaterProperties TVD_LIMIT_V Vertical TVD limitation 1 MinMod
2 VanLeer
3 Muscl
4 Superbee
5 PDM
Water WaterProperties UNITS Units of this property
Water WaterProperties USE_SED_REF_CONC Use Reference cohesive sediment concentration method for this property Partition sink and source model
Water WaterProperties VERTICAL_MOVEMENT This property has free vertical movement.
Water WaterProperties VOLUME_RELATION_MAX The relation between adjacent volumes above which the advection is upwind, for this property.
Water WaterProperties WARN_ON_NEGATIVE_VALUES Write a warning to screen when property has negative value
Water WaterProperties WATER_QUALITY This property has Water Quality Model as a sink and source

Module Waves

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Water Waves DISTANCE_TO_LAND_METHOD Chooses 1 of 2 methods to compute Distances to Land.

if keyword value = 1 (one) computes distances according to a "graphical" method between points and land polygons. If keyword = 0 (zero) computes distances with a method based on grid.

Water Waves RADIATION_TENSION_X Compute/read radiation stress in XX direction
Water Waves RADIATION_TENSION_Y Compute/read radiation stress in Y direction
Water Waves REMAIN_CONSTANT
Water Waves WAVE_DIRECTION Compute/read wave direction
Water Waves WAVE_HEIGHT Compute/read wave height
Water Waves WAVE_HEIGHT_PARAMETER Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave height calibration.
Water Waves WAVE_PERIOD Compute/read wave period
Water Waves WAVE_PERIOD_PARAMETER Proportional parameter ([final_value]=[parameter]*[computed_value]) for wave period calibration.
Water Waves WAVEGEN_TYPE Chooses 1 of 2 methods to compute Wave Height and Wave Period.

If keyword value equals 0 (zero), WaveHeight and WavePeriod are computed as originaly (wind modulus dependent). If value equals 1 (one), computes as CEQUAL-W2 way (wind, depth and Fetch dependent).

Water Waves WINDROSE_DIRECTIONS Number of wind directions for fetch calculation.

MOHID Tools

Valida4D

Source Code

Project Module Keyword Keyword description Options Option description Default Value Units Type
Valida4D ModuleValida4D INPUT_TABLE
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