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Difference between revisions of "Box2HDF5"

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(New page: DrawFluxesInHDF5 is a little tool that reads the boxes fluxes time series (.BXF and .BXM) and returns an HDF5 file with vector fields representing the fluxes between the boxes. ==Sou...)
 
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[[DrawFluxesInHDF5]] is a little tool that reads the boxes fluxes time series (.BXF and .BXM) and returns an HDF5 file with vector fields representing the fluxes between the boxes.
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Box2HDF5 is a little tool that creates a HDF5 file from a box definition file, a geometry file and a bathymetry file. This hdf5 file serve for checking that the desired boxes definition is correct in a visual way and also serves as input file for the tool [[DrawFluxesInHDF5]] that returns an HDF5 file with vector fields representing the fluxes between the boxes.
  
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==Source-safe whereabouts==
  
==Source-safe whereabouts==
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At the moment is not found neither in the sourcesafe nor in the Codeplex
The latest source code is in the [[codeplex]] inside the "SmallTools\DrawFluxesInHDF5" folder.
 
An older source code is in the '''Mohid_V4''' repository, inside the '''SmallTools\DrawFluxesInHDF5''' folder.
 
  
 
==Configuration==
 
==Configuration==
  
 
===Nomfich.dat===
 
===Nomfich.dat===
The nomfich file contains a single line pointing to the configuration file.
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The nomfich file contains a three lines pointing to the bathymetry, geometry and boxes files.
  IN_MODEL : CreateHDF5Boxes.dat
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  IN_BATIM        : TagusRibeiras.dat
 
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  IN_GEOM          : Geometry_1.dat
===CreateHDF5Boxes.dat===
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  IN_BOXES        : WQBoxesTagusRibeira3D.dat
Here's a sample configuration file (CreateHDF5Boxes.dat):
 
 
 
  HDF5BOXES_INFILE : Boxes.hdf5
 
  HDF5BOXES_OUFILE : OutBoxes.hdf5
 
BOXESSALINITYFILE : salinity.bxm
 
BOXESWATERFILE : water.bxm
 
BOXESWATERFLUXFILE : water.bxf
 
INDEXESFILE : BoxesFluxesIndexes.txt
 
INDEXESLENGTH : 436
 
 
 
# The first line contains the input boxes.hdf5 file. They represent the index map of the boxes created with the [[BoxHDF5]] tool.
 
# The second line tells the output filename.
 
# The third line contains the salinity inside the boxes.
 
# The fourth line contains the boxes water volumes timeseries.
 
# The fifth line contains the fluxes between boxes timeseries.
 
# The sixth line contains three columns displaying the column number, the source box index and the destination box index. Each row represents a flux of the water fluxes timeseries.
 
# The seventh and last line contains the total number of fluxes available in the water fluxes timeseries.
 
 
 
==BoxesFluxesIndexes.txt==
 
Here's a sample of the indexes file:
 
9 1 2
 
10 2 3
 
11 5 6
 
12 6 7
 
13 6 38
 
14 7 1
 
15 7 8
 
16 7 39
 
17 8 2
 
18 8 9
 
19 8 40
 
20 9 3
 
# First column: column index number.
 
# Second column: source box index.
 
# Third column: target box index.
 
 
 
==Example output==
 
<htm>
 
<a href="http://content.screencast.com/users/GRiflet/folders/Jing/media/9a4a7e12-6de7-4ca9-b5e2-5537f9679bd2/2008-07-25_1746.png"><img src="http://content.screencast.com/users/GRiflet/folders/Jing/media/9a4a7e12-6de7-4ca9-b5e2-5537f9679bd2/2008-07-25_1746.png" width="500" height="400" border="0" /></a>
 
</htm>
 
 
 
==Troubleshoot==
 
'''Q: Too many columns?'''
 
 
 
A: Add the following preprocessor directives in Module [[Mohid Base 1]]:
 
_BIG_MAX_COLUMNS,_EXTRA_LONG_LINE_LENGTH
 
  
 
==See also==
 
==See also==

Revision as of 17:15, 12 April 2011

Box2HDF5 is a little tool that creates a HDF5 file from a box definition file, a geometry file and a bathymetry file. This hdf5 file serve for checking that the desired boxes definition is correct in a visual way and also serves as input file for the tool DrawFluxesInHDF5 that returns an HDF5 file with vector fields representing the fluxes between the boxes.

Source-safe whereabouts

At the moment is not found neither in the sourcesafe nor in the Codeplex

Configuration

Nomfich.dat

The nomfich file contains a three lines pointing to the bathymetry, geometry and boxes files.

IN_BATIM         : TagusRibeiras.dat
IN_GEOM          : Geometry_1.dat
IN_BOXES         : WQBoxesTagusRibeira3D.dat

See also