Mohid Bibliography

Journal Papers By Author

A-E

Almeida C, Ramos TB, Sobrinho J, Neves R, Proença de Oliveira R. An Integrated Modelling Approach to Study Future Water Demand Vulnerability in the Montargil Reservoir Basin, Portugal. Sustainability. 2019; 11(1), 206. Available at: [Download]

Alonso R, Jackson M, Santoro P, Fossati M, Solari S, Teixeira L. Wave and tidal energy resource assessment in Uruguayan shelf seas. Renewable Energy. 2017; 114(Part A): 18-31. Available at: [Link]

Angeletti S, Pierini JO, Cervellini PM. Suspended sediment contribution resulting from bioturbation in intertidal sites of a SW Atlantic mesotidal estuary: data analysis and numerical modelling. Scientia Marina. 2018; 82(4): 245-256. Available at: [Download]

Antiguedad I, Zabaleta A, Martinez-Santos M, Ruiz E, Uriarte J, Morales T, Comin FA, Carranza F, Español C, Navarro E, Bodoque JM, Ladera J, Brito D, Neves R, Bernard-Jannin L, Sun X, Teissier S, Sauvage S, Sanchez-Perez JM. A simple multi-criteria approach to delimitate nitrate attenuation zones in alluvial floodplains. Four cases in south-western Europe, Ecological Engineering. 2017; 103(B): 315-331. Available at: [Link]

Archetti G, Bernia S, Salvà-Catarineu M. Análisis de los vectores ambientales que afectan la calidad del medio en la bahía del Fangar mediante herramientas SIG. GeoFocus. 2010; 10: 252-279. Available at: [Download] (In Spanish)

Arifin T, Y Y, Ismail MFA. Kondisi arus pasang surut di perairan pesisir kota Makassar, Sulawesi Selatan. Tidal currents condition in Makassar waters, South Sulawesi. Depik. 2012; 1(3): 183-188. Available at: [Link] (In Indonesian)

Ascione Kenov I, Deus R, Alves CN, Neves, R. Modelling seagrass biomass and relative nutrient content. Journal of Coastal Research. 2013; 29(6): 1470–1476. Available at: [Link]

Ascione Kenov I, Garcia AC, Neves R. Residence time of water in the Mondego Estuary (Portugal). Estuarine, Coastal and Shelf Science. 2012; 106: 13–22. Available at: [Link]

Ascione Kenov I, Muttin F, Campbell R, Fernandes R, Campuzano F, Machado F, Franz G, Neves R. Water fluxes and renewal rates at Pertuis d'Antioche/Marennes-Oléron Bay, France. Estuarine, Coastal and Shelf Science. 2015; 167, Part A: 32–44. Available at: [Link]

Ballent A, Pando S, Purser A, Juliano MF, Thomsen L. Modelled transport of benthic marine microplastic pollution in the Nazaré Canyon. Biogeosciences. 2013; 10: 7957-7970. Available at: [Link]

Balseiro CF, Carracedo P, Gómez B, Leitão P, Montero P, Naranjo L, Penabad E, Pérez-Muñuzuri V. Tracking the Prestige oil spill: An operational experience in simulation at MeteoGalicia. Weather. 2003; 58: 452–458. Available at: [Link]

Barão L, Chambel-Leitão P, Braunschweig F, Neves RJ, Gonçalves MC, Ramos TB, Castanheira NL. Simulation of water dynamics in two irrigated soils. Revista de Ciências Agrárias. 2010; 33(1): 346-357. Available at: [Download]

Bartolomeu S, Malhadas MS, Ribeiro J, Leitão PC, Dias JM. Influence of MeteOcean processes on MSYM sea level predictions in the Malacca Straits. Modern Management Forum. 2018; 2(2): 1-17. Available at: [Download]

Bastos L, Bio A, Iglesias I. The Importance of Marine Observatories and of RAIA in Particular. Frontiers in Marine Science. 2016; 3: 140. Available at: [Link]

Beckers PM, Neves RJ. A semi-implicit tidal model of the North European Continental Shelf. Applied Mathematical Modelling. 1985; 9(6): 395-402. Available at: [Link]

Bernard-Jannin L, Brito D, Sun X, Jauch E, Neves R, Sauvage S, Sánchez-Pérez JM. Spatially distributed modelling of surface water-groundwater exchanges during overbank flood events – a case study at the Garonne River. Advances in Water Resources. 2016; 94: 146-159. Available at: [Link]

Bodoque JM, Ladera J, Yela JL, Alonso-Azcárate J, Brito D, Antigüedad I, Duran R, Attard E, Lauga B, Sánchez-Pérez JM. Recovering hydromorphological functionality to improve natural purification capacity of a highly human-modified wetland. Ecological Engineering. 2017; 103(B): 332-343. Available at: [Link]

Brandimarte L, Popescu I, Neamaha NK. Analysis of fresh-saline water interface at the Shatt Al-Arab estuary. International Journal of River Basin Management. 2015; 13(1): 17-25. Available at: [Link]

Braunschweig F, Martins F, Chambel P, Neves R. A methodology to estimate renewal time scales in estuaries: the Tagus Estuary case. Ocean Dynamics. 2003; 53(3): 137-145. Available at: [Link]

Braunschweig F, Leitão P, Fernandes L, Pina P, Neves RJJ. The object-oriented design of the integrated water modelling system MOHID. Developments in Water Science. 2004; 55(2): 1079-1090. Available at: [Link]

Brito D, Campuzano FJ, Sobrinho J, Fernandes R, Neves R. Integrating operational watershed and coastal models for the Iberian Coast: Watershed model implementation – A first approach. Estuarine, Coastal and Shelf Science. 2015; 167, Part A: 138-146. Available at: [Link]

Brito D, Neves R, Branco MA, Gonçalves MC, Ramos TB. Modeling ﬂood dynamics in a temporary river draining to an eutrophic reservoir in southeast Portugal. Environ Earth Sciences. 2017; 76:377 Available at: [Link]

Brito D, Ramos TB, Gonçalves MC, Morais M, Neves R. Integrated modelling for water quality management in a eutrophic reservoir in south-eastern Portugal.Environmental Earth Sciences. 2018; 77(2): 40. Available at: [Link]

Brock TD. Calculating solar radiation for ecological studies. Ecological Modelling. 1981; 14(1–2): 1-19. Available at: [Link]

Brown SL, Cox R, Feunteun E, Thorin S, Lefeuvre JC. Overview of the EUROSAM project and a Decision Support System. Continental Shelf Research. 2003; 23: 1617-1634. Available at: [Link]

Calero Quesada MC, García-Lafuente J, Garel E, Delgado Cabello J, Martins F, Moreno-Navas J. Effects of tidal and river discharge forcings on tidal propagation along the Guadiana Estuary. Journal of Sea Research. 2019; 146: 1-13. Available at: [Link]

Campuzano F, Brito D, Juliano M, Fernandes R, de Pablo H, Neves R. Coupling watersheds, estuaries and regional ocean through numerical modelling for Western Iberia: a novel methodology. Ocean Dynamics. 2016; 66(12): 1745–1756. Available at: [Link]

Campuzano FJ, Gutiérrez JM, Senabre T, Mateus MD, Perán A, Belmonte A, Aliaga V, Neves R. A modelling approach to estimate the environmental and productive carrying capacity for a Mediterranean coastal marine culture park. Journal of Aquaculture Research & Development. 2015; 6: 373. Available at: [Link]

Campuzano FJ, Mateus MD, Leitão PC, Leitão PC, Marín VH, Delgado LE, Tironi A, Pierini JO, Sampaio AFP, Almeida P, Neves RJ. Integrated coastal zone management in South America: A look at three contrasting systems. Ocean & Coastal Management. 2013; 72: 22-35. Available at: [Link].

Campuzano FJ, Pierini JO, Leitão PC, Gómez EA, Neves RJ. Characterization of the Bahia Blanca estuary by data analysis and numerical modelling. Journal of Marine Systems. 2014; 129: 415-424. Available at: [Link]

Campuzano F, Nunes S, Malhadas M, Neves R. Modelling hydrodynamics and water quality of Madeira Island (Portugal). GLOBEC International Newsletter. 2010; 16(1): 40-42. Available at: [Download]

Canas A, Santos A, Leitão P. Effect of large scale atmospheric pressure changes on water level in the Tagus Estuary. Journal of Coastal Research. 2009; SI(56): 1627-1631. Available at: [Download]

Cancino L, Neves R. Hydrodynamic and sediment suspension modelling in estuarine systems Part I: Description of the numerical models. Journal of Marine Systems. 1999; 22(2-3): 105-116. Available at: [Link]

Cancino L, Neves R. Hydrodynamic and sediment suspension modelling in estuarine systems Part II: Application to the Western Scheldt and Gironde estuaries. Journal of Marine Systems. 1999; 22(2-3): 117-131. Available at: [Link]

Canuto N, Ramos TB, Oliveira AR, Simionesei L, Basso M, Ramiro Neves. Influence of reservoir management on Guadiana streamflow regime. Journal of Hydrology: Regional Studies. 2019; 25: 100628. Available at: [Link]

Capet A, Fernández V, She J, Dabrowski T, Umgiesser G, Staneva J, Mészáros L, Campuzano F, Ursella L, Nolan G, El Serafy G. Operational Modeling Capacity in European Seas—An EuroGOOS Perspective and Recommendations for Improvement. Frontiers in Marine Science. 2020; 7: 129. Available at: [Download]

Carracedo P, Torres-López S, Barreiro M, Montero P, Balseiro CF, Penabad E, Leitao PC, Pérez-Muñuzuri V. Improvement of pollutant drift forecast system applied to the Prestige oil spills in Galicia Coast (NW of Spain): development of an operational system. Marine Pollution Bulletin. 2006; 53(5-7): 350-360. Available at: [Link]

Carvajalino-Fernandez MA, Lojek O, Fernandes L, Vivas-Aguas LJ. Desarrollo preliminar de un modelo hidrodinámico y de transporte de nutrientes para la ciénaga grande de Santa Marta. Boletín de Investigaciones Marinas y Costeras - INVEMAR. 2017; 46(1): 191-198. Available at: [Link]

Ceregeiro JM, Pinheiro MD, Campuzano FJ. Tidal farm electric energy production in the Tagus Estuary. Revista de Gestão Costeira Integrada. 2020; 20(1): 61-78. Available at: [Download]

Cerralbo P, Grifoll M, Espino M, López J. Predictability of currents on a mesotidal estuary (Ria de Vigo, NW Iberia). Ocean Dynamics. 2013; 63(2-3): 131-141. Available at: [Link]

Chacaltana J, Jesus L, Barreto F, Innocentini V. Tide assessment for the continental shelf situated in the southwestern Atlantic between the latitudes 19.8ºS and 21.2ºS. Brazilian Journal of Oceanography. 2016; 64(2): 113-126. Available at: [Download]

Chambel-Leitão P, Ramos TB, Domingos T, Neves R. Mohid Land - Porous Media, a Tool for Modeling Soil Hydrology at Plot Scale and Watershed Scale. The Open Hydrology Journal. 2015; 9: 1-12. Available at: [Link]

Chang YS, Jin J-Y, Choi JY, Jeong WM, Hyun SK, Chung CS, Do JD. Three dimensional numerical modeling using a multi-level nesting system for identifying a water layer suitable for scallop farming in Tongyeong, Korea. Aquacultural Engineering. 2020; 89. Available at: [Link]

Cherif I, Alexandridis TK, Jauch E, Chambel-Leitao P, Almeida C. Improving remotely sensed actual evapotranspiration estimation with raster meteorological data. International Journal of Remote Sensing. 2015; 36(18): 4606-4620. Available at: [Link]

Cho K-H, Choi J-Y, Jeong S-H, Choi J-W, Kwon J-I, Park K-S. Development of a skill assessment tool for the Korea operational oceanographic system. Acta Oceanologica Sinica. 2013; 32(9): 74-81. Available at: [Link]

Cho K-H, Li Y, Wang H, Park K-S, Choi J-Y, Shin K-I, Kwon J-I. Development and validation of an operational search and rescue modeling system for the Yellow Sea and the East and South China Seas. Journal of Atmospheric and Oceanic Technology. 2014; 31: 197–215. Available at: [Link]

Choi J, Jun K, Choi Y, Cho K, Kwon J-I, Park J, Park K. High-resolution circulation forecasting of the Maenggol Channel, south coast of Korea. Acta Oceanologica Sinica. 2015; 34(12): 11-18. Available at: [Link]

Choi JW, Kwon JI, Heo KY, Choi JY. Hindcasting of search and rescue cases using the trajectory model based on KOOS (Korea Operational Oceanographic System). Journal of Coastal Research (2020) 95 (SI): 900–904. Available at: [Link]

Choi J-Y, Park J-Y, Cho K-H, Hyun S-K, Yoo J, Lee D-Y, Jun K-C. Field observation and modeling of wave set-up on a macrotidal beach: the Malipo Experiment. Journal of Coastal Research. 2013; Special Issue No. 65. Available at:[Download]

Cloux S, Allen-Perkins S, de Pablo H, Garaboa-Paz D, Montero P, Pérez Muñuzuri V. Validation of a Lagrangian model for large-scale macroplastic tracer transport using mussel-peg in NW Spain (Ría de Arousa). Science of The Total Environment. 2022; 822:153338. Available at: [Download]

Coelho HS, Neves RR, Leitão PC, Martins H, Santos AP. The slope current along the western European margin : A numerical investigation. Bol. Inst. Esp. Oceanogr. 1999; 15(1-4): 61-72. Available at: [Download]

Coelho H, Neves R, White M, Leitao P, Santos A. A model for ocean circulation on the Iberian coast. Journal of Marine Systems. 2002; 32(1-3): 153-179. Available at: [Link]

Comin FA, Sánchez-Pérez JM, Español C, Carranza F, Sauvage S, Antiguedad I, Zabaleta A, Martinez-Santos M, Gerino M, Yao JM, Bodoque JM, Ladera J, Yela JL, Teissier S, Bernard-Jannin J, Sun X, Navarro E, Pinelli E, Chamsi O, Neves R, Brito D, Ruiz E, Uriarte J, Jiménez JJ, García M, Barcos A, Sorando R, Floodplain capacity to depollute water in relation to the structure of biological communities, Ecological Engineering, Volume 103, Part B, June 2017, Pages 301-314, ISSN 0925-8574 Available at: [Link]

Contreras-Tereza VK, Salas-de-León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. The 2010 Gulf of Mexico oil spill: a modeling study. Arabian Journal of Geosciences. 2021; 14:636. Available at: [Link]

Contreras‐Tereza VK, Salas‐de‐León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. Tsunami run‐up along the Zihuatanejo region, Mexican Pacific Coast: A modelling study. J Flood Risk Management. 2021; 14:e12669. Available at: [Download]

Critchell K, Grech A, Schlaefer J, Andutta FP, Lambrechts J, Wolanski E, Hamann M. Modelling the fate of marine debris along a complex shoreline: Lessons from the Great Barrier Reef, Estuarine, Coastal and Shelf Science. 2015; 167(B): 414–426. Available at: [Link]

Deus R, Brito D, Kenov IA, Lima M, Costa V, Medeiros A, Neves R, Alves CN. Three-dimensional model for analysis of spatial and temporal patterns of phytoplankton in Tucuruí reservoir, Pará, Brazil. Ecological Modelling. 2013; 253: 28-43. Available at: [Link]

deCastro M, Gómez-Gesteira M, Alvarez I, Prego R. Negative estuarine circulation in the Ria of Pontevedra (NW Spain). Estuarine, Coastal and Shelf Science. 2004; 60(2): 301-312. Available at: [Link]

deCastro M, Gómez-Gesteira M, Prego R, Neves R. Wind influence on water exchange between the ria of Ferrol (NW Spain) and the shelf. Estuarine, Coastal and Shelf Science. 2003; 56(5-6): 1055-1064. Available at: [Link]

de Pablo H, Sobrinho J, Garaboa-Paz D, Fonteles C, Neves R, Gaspar MB. The influence of the river discharge on residence time, exposure time and integrated water fractions for the Tagus Estuary (Portugal). Frontiers in Marine Science. 2022; 8:734814. Available at: [Download]

de Pablo H, Sobrinho J, Garcia M, Campuzano F, Juliano M. Validation of the 3D-MOHID Hydrodynamic Model for the Tagus Coastal Area. Water. 2019; 11: 1–21. Available at: [Link]

Declerck D, Delpey M, Rubio A, Ferrer L, Basurko OC, Mader J, Louzao M. Transport of floating marine litter in the coastal area of the south-eastern Bay of Biscay: A Lagrangian approach using modelling and observations. Journal of Operational Oceanography. 2019. Available at: [Link]

Delpey MT, Ardhuin F, Otheguy P, Jouon A. Effects of waves on coastal water dispersion in a small estuarine bay. Journal of Geophysical Research: Oceans. 2014; 119: 1–17. Available at: [Link]

Desmit X, Thieu V, Billen G, Campuzano F, Dulière V, Garnier J, Lassaletta L, Ménesguen A, Neves R, Pinto L, Silvestre M, Sobrinho JL, Lacroix G. Reducing marine eutrophication may require a paradigmatic change. Science of The Total Environment. 2018; 635: 1444-1466. Available at: [Link]

Díaz LO, Pierini JO, Leitao PC, Malhadas M, Ribeiro J, Leitao JC, Restrepo J. Three-dimensional oil spill transport and dispersion at sea by an event of blowout. DYNA. August 2014; 81 (186): 42-50. Available at: [Download]

Duarte B, Valentim JM, Dias JM, Marques JC, Silva H, Caçador I. Modelling sea level rise (SLR) impacts on salt marsh detrital outwelling C and N exports from an estuarine coastal lagoon to the ocean (Ria de Aveiro, Portugal). Ecological Modelling. 2014; 289: 36–44. Available at: [Link]

Epelde AM, Antiguedad I, Brito D, Jauch E, Neves R, Garneau C, Sauvage S, Sánchez-Pérez JM. Different modelling approaches to evaluate nitrogen transport and turnover at the watershed scale. Journal of Hydrology. 2016; 539: 478-494. Available at: [Link]

Evaristo A, Pinto L, Ascione Kenov I, Neves R. Hidrodinâmica da Baía do Lobito. Parte I - Correntes de maré. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 101-110. Available at: [Download]. (In Portuguese)

Evaristo A, Neves R, Pinto L, Sobrinho J. Hidrodinâmica da Baía do Lobito. Parte II - Escoamento Baroclínico. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 111-125. Available at: [Download]. (In Portuguese)

F-J

Fernandes R, Braunschweig F, Lourenço F, Neves R. Combining operational models and data into a dynamic vessel risk assessment tool for coastal regions. Ocean Science. 2016; 12: 285-317. Available at: [Link].

Figueiredo D, Dos Santos A, Mateus M, Pinto L. Hydrodynamic modelling of Port Foster, Deception Island, Antarctica. Antarctic Science. 2018; 115-124. Available at: [Link].

Fonseca VF, Reis-Santos P, Duarte B, Cabral HN, Caçador MI, Vaz N, Dias JM, Pais MP. Roving pharmacies: Modelling the dispersion of pharmaceutical contamination in estuaries. Ecological Indicators. 2020; 115: 106437. Available at: [Link]

Fossati M, Piedra-Cueva I. A 3D hydrodynamic numerical model of the Río de la Plata and Montevideo’s coastal zone. Applied Mathematical Modelling. 2013; 37(3):1310-1332. Available at: [Link].

Franz G, Delpey M, Brito D, Pinto L, Leitão P, Neves R. Modelling of sediment transport and morphological evolution under the combined action of waves and currents. Ocean Science Discussions. 2017; 3:1-26. Available at: [Link].

Franz G, Garcia CAE, Pereira J, de Freitas Assad LP, Rollnic M, Garbossa LHP, da Cunha LC, Lentini CAD, Nobre P, Turra A, Trotte-Duhá JR, Cirano M, Estefen SF, Lima JAM, Paiva AM, Noernberg MA, Tanajura CAS, Moutinho JL, Campuzano F, Pereira ES, Lima AC, Mendonça LFF, Nocko H, Machado L, Alvarenga JBR, Martins RP, Böck CS, Toste R, Landau L, Miranda T, dos Santos F, Pellegrini J, Juliano M, Neves R, Polejack A. Coastal Ocean Observing and Modeling Systems in Brazil: Initiatives and Future Perspectives. Frontiers in Marine Science. 2021; 8: 681619. Available at: [Download]

Franz G, Leitão P, Pinto L, Jauch E, Fernandes L, Neves R. Development and validation of a morphological model for multiple sediment classes. International Journal of Sediment Research. 2017. Available at: [Link]

Franz G, Leitão P, Santos A, Juliano M, Neves R. From regional to local scale modelling on the south-eastern Brazilian shelf: case study of Paranaguá estuarine system. Brazilian Journal of Oceanography. 2016; 64(3): 277-294. Available at: [Download].

Franz G, Pinto L, Ascione I, Mateus M, Fernandes R, Leitão P, Neves R. Modelling of cohesive sediment dynamics in tidal estuarine systems: Case study of Tagus estuary, Portugal. Estuarine, Coastal and Shelf Science. 2014; 151: 34–44. Available at: [Link].

Gabriel S, Martins F. First results of a long term morphodynamic process based model. Journal of Coastal Research. 2009; SI(56): 952-955. Available at: [Download].

Galesic M, Andricevic R, Gotovac H, Srzic V. Concentration statistics of solute transport for the near field zone of an estuary. Advances in Water Resources. 2016; 94: 424-440. Available at: [Link].

Galvao P, Chambel Leitao P, Neves R, ChambelLeitao P. A different approach to the modified Picard method for water flow in variably saturated media. Developments in Water Science. 2004; 55(1): 557-567. Available at: [Link].

Garbossa LHP, Santos AA, Lapa KR. Seaweed dispersion under different environmental scenarios based on branches settling velocity and hydrodynamic lagrangian model, Regional Studies in Marine Science. 2021, 101909, ISSN 2352-4855, Available at: [Link]

Gardi A, Valencia N, Guillande R, André C. Inventory of uncertainties associated with the process of tsunami damage assessment on buildings (SCHEMA FP6 EC co-funded project). Natural Hazards and Earth System Sciences. 2011; 11: 883–893. Available at: [Download].

Garneau C, Duchesne S, St-Hilaire A. Comparison of modelling approaches to estimate trapping efficiency of sedimentation basins on peatlands used for peat extraction. Ecological Engineering. 2019; 133: 60-68. Available at: [Link]

Garneau C, Sauvage S, Sánchez-Pérez J-M, Lofts S, Brito D, Neves R, Probst A. Modelling trace metal transfer in large rivers under dynamic hydrology: A coupled hydrodynamic and chemical equilibrium model. Environmental Modelling & Software. 2017; 89: 77-96. Available at: [Link].

Gaspar R, Marques L, Pinto L, Baeta A, Pereira L, Martins I, Marques JC, Neto JM. Origin here, impact there — The need of integrated management for river basins and coastal areas. Ecological Indicators. 2017; 72: 794-802. Available at: [Link].

Genio L, Sousa A, Vaz N, Dias J, Barroso C. Effect of low salinity on the survival of recently hatched veliger of Nassarius reticulatus (L.) in estuarine habitats: A case study of Ria de Aveiro. Journal of Sea Research. 2008; 59(3): 133-143. Available at: [Link].

Gobbetti LEC. Design of the filling and emptying system of the new Panama Canal locks. Journal of Applied Water Engineering and Research. 2013; 1(1): 28-38. Available at: [Link].

Gomes N, Neves R, Ascione-Kenov I, Campuzano FJ, Pinto L. Tide and tidal currents in the Cape Verde archipelago. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2015; 15(3): 395-408. Available at: [Download].

Gomez-gesteira M, Montero P, Prego R, Taboada JJ, Leitão P, Ruiz-Villarreal M, Neves R, Pérez-Villar V. A two-dimensional particle tracking model for pollution dispersion in A Coruña and Vigo Rias (NW Spain). Oceanologica Acta. 1999; 22: 167-177. Available at: [Download].

Ha, S. Y., Yoon, H.-S. and Kim, Y.-T. Study on the Prediction of the Surface Drifter Trajectories in the Korean Strait. Journal of Korean Society of Coastal and Ocean Engineers. Korean Society of Coastal and Ocean Engineers. doi: 10.9765/kscoe.2022.34.1.11. Available at: [Download]

Hamidi-Razi H, Mazaheri M, Carvajalino-Fernández M, Vali-Samani J. Investigating the restoration of Lake Urmia using a numerical modelling approach. Journal of Great Lakes Research. 2019; 45(1): 87-97. Available at: [Link]

Hermansyah H, Ningsih NS, Nabil N, Tarya A, Syahruddin S. Numerical modeling of tidal current patterns using 3-Dimensional MOHID in Balikpapan Bay, Indonesia. Jurnal Ilmiah Perikanan dan Kelautan. 2020; 12(1): 9–20. Available at: [Download]

Henry L-A, Moreno Navas J, Roberts JM. Multi-scale interactions between local hydrography, seabed topography, and community assembly on cold-water coral reefs. Biogeosciences. 2013; 10:2737-2746. Available at: [Link].

Huhn F, von Kameke A, Allen-Perkins S, Montero P, Venancio A, Pérez-Muñuzuri V. Horizontal Lagrangian transport in a tidal-driven estuary—Transport barriers attached to prominent coastal boundaries. Continental Shelf Research. 2012; 39–40:1–13. Available at: [Link].

Huthnance JM, Coelho H, Griffiths CR, Knight PJ, Rees AP, Sinha B, Vangriesheim A, White M, Chatwin PG. Physical structures, advection and mixing in the region of Goban spur. Deep Sea Research Part II: Topical Studies in Oceanography. 2001; 48(14-15): 2979-3021. Available at: [Link].

Janeiro J, Fernandes E, Martins F, Fernandes R. Wind and freshwater influence over hydrocarbon dispersal on Patos Lagoon, Brazil. Marine Pollution Bulletin. 2008; 56(4): 650-665. Available at: [Link].

Janeiro J, Martins F, Relvas P. Towards the development of an operational tool for oil spills management in the Algarve coast. Journal of Coastal Conservation. 2012; 16(4): 449-460. Available at: [Link].

Janeiro J, Zacharioudaki A, Sarhadi E, Neves A, Martins F. Enhancing the management response to oil spills in the Tuscany Archipelago through operational modelling. Marine Pollution Bulletin. 2014; 85(2): 574-589. Available at: [Link].

Janeiro J, Neves A, Martins F, Relvas P. Integrating technologies for oil spill response in the SW Iberian coast. Journal of Marine Systems. September 2017; 173: 31-42. Available at: [Link]

Juliano MMF, Neves R, Rodrigues PPGW, Lugon Jr. J, Fernandes R. Aplicação da Plataforma MOHID para simulação computacional de deriva oceânica de petróleo na bacia de Campos - RJ. Boletim do Observatório Ambiental Alberto Ribeiro Lamego. 2012; 6(1): 161-172. Available at: [Download]. (In Portuguese)

K-O

Lee C, Choi H-W, Park J, Kim J, Park J. Derivation of candidate sites for a tidal current-pumped storage hybrid power plant using GIS-based site selection analysis. Journal of the Korean Association of Geographic Information Studies. 2020; 23(4): 184–207. Available at: [Download] (In Korean)

Lee J-H, Lim B-J, Kim D-Y, Park S-H, Chang Y-S. The validation of MOHID regional ocean circulation model around the East Asian Seas in 2016. Journal of the Korean Earth Science Society. 2018; 39(5): 436-457. Available at: [Download] (In Korean)

Leitão P, Coelho H, Santos A, Neves R. Modelling the main features of the Algarve coastal circulation during July 2004: A downscaling approach. Journal of Atmospheric & Ocean Science. 2005; 10(4): 421-462. Available at: [Link].

Leitão P, Galvão P, Aires E, Almeida L, Viegas C. Fecal contamination modeling in coastal waters using a web service approach. Environmental Engineering and Management Journal. 2012; 11(5):899-906. Available at: [Download].

Leitão P, Silva A, Ribeiro J, Carneiro E, Pinto J. Avaliação de taxas de assoreamento no estuário do rio Sado. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2020; 20(2): 121-130. Available at: [Download]. (In Portuguese)

Li Y, Martins F, Wolanski E. Sensitivity analysis of the physical dynamics of the Fly River plume in Torres Strait. Estuarine, Coastal and Shelf Science. 2017; 194: 84-91. Available at: [Link].

Lillebø AI, Stålnacke P, Gooch GD, Krysanova V, Bielecka M. Pan-European management of coastal lagoons: a Science-Policy-Stakeholder interface perspective. Estuarine, Coastal and Shelf Science. 2017; 198(B): 648-656. Available at: [Link].

Lindo-Atichati D, Montero P, Rodil R, Benito Quintana J, Miró M. Modeling Dispersal of UV Filters in Estuaries. Environmental Science & Technology. 2019; 53(3): 1353-1363. Available at: [Link]

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Loureiro S, Newton A, Icely J. Boundary conditions for the European Water Framework Directive in the Ria Formosa lagoon, Portugal (physico-chemical and phytoplankton quality elements). Estuarine, Coastal and Shelf Science. 2006; 67: 382-398. Available at: [Link].

Lozoya JP, Teixeira de Mello F, Carrizo D, Weinstein F, Olivera Y, Cedrés F, Pereira M, Fossati M. Plastics and microplastics on recreational beaches in Punta del Este (Uruguay): Unseen critical residents? Environmental Pollution. 2016; 218: 931-941. Available at: [Link].

Lugon Jr J, Costa VTR, Rodrigues PPGW. Assessment of the impact of a small hydroelectric power plant over the water quality of the Itabapoana River through a computational model. Ciência e Natura. 2016; 38(1): 95-105. Available at: [Download]. (In Portuguese)

Lugon Jr J, Kalas F de A, Rodrigues PPGW, Jeveaux JL, Neto HG, Juliano MM, da Silva Neto AJ. Lagrangian trajectory simulation of floating objects in the State of São Paulo coastal region. Defect and Diffusion Forum. 2019; 396: 42–49. Available at: [Link]

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Malhadas MS, Silva A, Leitão PC, Neves R. Effect of the bathymetric changes on the hydrodynamic and residence time in Óbidos Lagoon (Portugal). Journal of Coastal Research. 2009; SI(56): 549-553. Available at: [Download].

Marín VH, Campuzano FJ. Un modelo hidrodinámico-barotrópico para los fiordos australes de Chile entre los 41° S y los 46° S. Ciencia y Tecnología del Mar. 2008; 31(2): 125-136. Available at: [Download]. (In Spanish).

Marín VH, Tironi A, Paredes MA, Contreras M. Modeling suspended solids in a Northern Chilean Patagonia glacier-fed fjord: GLOF scenarios under climate change conditions. Ecological Modelling. 2013; 264:7-16. Available at: [Link].

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Martins F, Leitão P, Neves R. Simulating vertical water mixing in homogeneous estuaries: the Sado Estuary case. Hydrobiologia. 2002; 475/476: 221-227. Available at: [Link].

Martins F, Leitão P, Silva A, Neves R. 3D modelling in the Sado estuary using a new generic vertical discretization approach. Oceanologica Acta. 2001; 24(Supplement 1): 51-62. Available at: [Link].

Martins F, Pina P, Calado S, Delgado S, Neves R. A coupled hydrodynamic and ecological model to manage water quality in Ria Formosa coastal lagoon. Advances In Ecological Sciences. 2003; 18-19: 93-100. Available at: [Download].

Martins F, Reis MP, Neves R, Cravo AP, Brito A, Venâncio A. Molluscan shellfish bacterial contamination in Ria Formosa coastal lagoon: A modelling approach. 2004; SI(39): 1551-1555. Available at: [Link].

Martins I, Dias E, Ilarri MI, Campuzano FJ, Pinto L, Santos MM, Antunes C. Antagonistic effects of multiple stressors on macroinvertebrate biomass from a temperate estuary (Minho estuary, NW Iberian Peninsula). Ecological Indicators. 2019; 101: 792-803. Available at: [Link]

Mateus M. A process-oriented model of pelagic biogeochemistry for marine systems. Part I: Model description. Journal of Marine Systems. 2012; 94(Supplement): S78–S89. Available at: [Link].

Mateus M, da Silva Vieira R, Almeida C, Silva M, Reis F. ScoRE—A Simple Approach to Select a Water Quality Model. Water. 2018; 10(12): 1811. Available at: [Download]

Mateus MD, Franz G. Sensitivity Analysis in a Complex Marine Ecological Model. Water. 2015; 7(5): 2060-2081. Available at: [Link].

Mateus M, Leitão PC, de Pablo H, Neves R. Is it relevant to explicitly parameterize chlorophyll synthesis in marine ecological models?. Journal of Marine Systems. 2012; 94(Supplement): S23–S33. Available at: [Link].

Mateus M, Neves R. Evaluating light and nutrient limitation in the Tagus estuary using a process-oriented ecological model. Journal of Marine Engineering and Technology. 2008; 12A: 43-54. Available at: [Link]

Mateus M, Pinto L, Chambel-Leitão P. Evaluating the predictive skills of ocean circulation models in tracking the drift of a human body: a case study. Australian Journal of Forensic Sciences. 2014; 0: 1–10. Available at: [Link].

Mateus M, Riflet G, Chambel P, Fernandes L, Fernandes R, Juliano M, Campuzano F, de Pablo H, Neves R. An operational model for the West Iberian coast: products and services. Ocean Science. 2012; 8: 713-732. Available at: [Link]

Mateus M, Vaz N, Neves R. A process-oriented model of pelagic biogeochemistry for marine systems. Part II: Application to a mesotidal estuary. Journal of Marine Systems. 2012; 94(Supplement): S90–S101. Available at: [Link].

Mendes J, Leitão P, Chambel Leitão J, Bartolomeu S, Rodrigues J, Dias JM. Improvement of an Operational Forecasting System for Extreme Tidal Events in Santos Estuary (Brazil). Geosciences. 2019; 9(12): 511. Available at: [Link]

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Mills L, Janeiro J, Neves AAS, Martins F. The impact of sea level rise in the Guadiana estuary. Journal of Computational Science. 2020; 44: 101169. Available at: [Link]

Miranda R, Leitão PC, Coelho HS, Martins H, Neves RR. Transport and mixing simulation along the continental shelf edge using a Lagrangian approach. Bol. Inst. Esp. Oceanogr. 1999; 15(1-4): 39-60. Available at: [Download]

Morais P, Martins F, Chícharo MA, Lopes J, Chícharo L. Merging anchovy eggs abundance into a hydrodynamic model as an assessment tool for estuarine ecohydrological management. River Research and Applications. 2010. Available at: [Link]

Montanhini Neto R, Nocko HR, Ostrensky A. Carrying capacity and potential environmental impact of fish farming in the cascade reservoirs of the Paranapanema River, Brazil. Aquaculture Research. 2017; 48: 3433–3449. Available at: [Link].

Montero P, Gomez-gesteira M, Taboada JJ, Ruiz-Villarreal M, Santos AP, Neves RR, Pérez-Villar V. On residual circulation of the Ria of Vigo, using a 3-D baroclinic model. Bol. Inst. Esp. Oceanogr. 1999; 15(1-4): 31-38. Available at: [Download].

Muttin F, Campbell R, Ouansafi A, Benelmostafa Y. Numerical modelling and full-scale exercise of oil-spill containment boom on Galician coast. International Journal of Computational Methods and Experimental Measurements. 2017; 5(5): 760-770. Available at: [Download].

Nam YW, Cho HY, Kim DY, Moon SH, Kim YH. An improvement on estimated drifter tracking through machine learning and evolutionary search. Applied Sciences. 2020; 10(22): 8123. Available at: [Link]

Navas JM, Telfer TC, Ross LG. Application of 3D hydrodynamic and particle tracking models for better environmental management of finfish culture. Continental Shelf Research. 2011; 31(6): 675-684. Available at: [Link].

Neves RJ. A bidimensional model for residual circulation in coastal zones. Application to the Sado Estuary. Annalles Geophysicae. 1985; 3 & 4: 465-472.

Neves R, Chambel-Leitão P, Leitão PC. Modelação Numérica Da Circulação Da água no solo-o modelo MOHID. Pedologia. 2000; 28(1). [Download]

Neves RJJ, Coelho HS, Leitão PC, Martins H, Santos A. A numerical investigation of the slope current along the Western European margin. WIT Transactions on Ecology and the Environment. 1998; 17: 369-376. [Download]

Niraj PS, Balaji R, Vethamony P. Pre-monsoon hydrodynamic modeling of Goa coast, West coast of India. ISH Journal of Hydraulic Engineering. 2015; Available at: [Link].

Nobre A, Ferreira J, Newton A, Simas T, Icely J, Neves R. Management of coastal eutrophication: Integration of field data, ecosystem-scale simulations and screening models. Journal of Marine Systems. 2005; 56(3-4): 375-390. Available at: [Link].

Nogueira E, Bravo I, Montero P, Díaz-Tapia P, Calvo S, Ben-Gigirey B, Figueroa RI, Garrido JL, Ramilo I, Lluch N, Rossignoli AE, Riobó P, Rodríguez F. HABs in coastal upwelling systems: Insights from an exceptional red tide of the toxigenic dinoflagellate Alexandrium minutum. Ecological Indicators. 2022; 137:108790. Available at: [Download]

Oliveira AP, Mateus MD, Cabeçadas G, Neves R. Water-air CO₂ fluxes in the Tagus estuary plume (Portugal) during two distinct winter episodes. Carbon Balance and Management. 2015; 10:2. Available at: [Link].

Oliveira AP, Pilar-Fonseca T, Cabeçadas G, Mateus M. Local variability of CO₂ partial pressure in a mid-latitude mesotidal estuarine system (Tagus Estuary, Portugal). Geosciences. 2018; 8(12): 460. Available at: [Download]

Oliveira AR, Ramos TB, Simionesei L, Pinto L, Neves R. Sensitivity Analysis of the MOHID-Land Hydrological Model: A Case Study of the Ulla River Basin. Water. 2020; 12(11): 3258. Available at: [Download].

Olsson O, Sorokin A, Ikramova M. Modelling scenarios to identify a combined sediment-water management strategy for the large reservoirs of the Tuyamuyun hydro-complex. Irrigation and Drainage Systems. 2011; 25(1):1-18. Available at: [Link].

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P-T

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Paiva, PM, Lugon Junior J, Calderón EN, Juliano MM, Molisani, M. Decommissioning of subsea oil and gas production pipelines: hydrodynamic modeling for preliminary assessment of sediment resuspension and burial onto benthic organisms. Journal of Integrated Coastal Zone Management. 2020: 20(3): 161-168. Available at: [Download]

Palomar P, Losada I. Desalinización de agua marina en España: Aspectos a considerar en el diseño del sistema de vertido para protección del medio marino. Revista de Obras Públicas. 2008; 3486: 37-52. Available at: [Download]. (In Spanish).

Pando S, Juliano MF, García R, de Jesus Mendes PA, Thomsen L. Application of a lagrangian transport model to organo-mineral aggregates within the Nazaré canyon. Biogeosciences. 2013; 10: 4103-4115. Available at: [Link].

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Park K-S, Heo K-Y, Jun K, Kwon J-I, Kim J, Choi J-Y, Cho K-H, Choi B-J, Seo S-N, Kim Y, Kim S-D, Yang C-S, Lee J-C, Kim S-I, Kim S, Choi J-W, Jeong S-H. Development of the Operational Oceanographic System of Korea. Ocean Science Journal. 2015; 50(2): 353-369. Available at: [Link].

Pehlivanoglu-mantas E, Onay M, Martíns F. Oil spill modeling in East Mediterranean. Gazi Üniversitesi Mühendislik Mimarlık Fakültesi Dergisi. 2020; 35(4): 1737-1750. Available at: [Download] (In Turkish)

Picado A, Abreu J, Carvalho DM, Santos H, Leitão P, Rodrigues J, Chambel Leitão J, Dias JM. Optimization of safe navigability conditions in shallow inland waters: The Routinav app. Ocean Engineering. 2022; 259: 111946. Available at: [Download].

Pierini JO, Campuzano FJ, Leitão PC, Gómez EA, Neves RJ. Atmospheric influence over the residence time in the Bahia Blanca Estuary, Argentina. Thalassas. 2019; 35(1): 275–286. Available at: [Link]

Pierini JO, Lovallo M, Telesca L, Gómez EA. Investigating prediction performance of an artificial neural network and a numerical model of the tidal signal at Puerto Belgrano, Bahia Blanca Estuary (Argentina). Acta Geophysica. 2013; 61(6): 1522-1537. Available at: [Link].

Pinto L, Mateus M, Silva A. Modeling the transport pathways of harmful algal blooms in the Iberian coast. Harmful Algae. 2016; 53: 8-16. Available at: [Link].

Piroddi C, Teixeira H, Lynam CP, Smith C, Alvarez MC, Mazik K, Andonegi E, Churilova T, Tedesco L, Chifflet M, Chust G, Galparsoro I, Garcia AC, Kämäri M, Kryvenko O, Lassalle G, Neville S, Niquil N, Papadopoulou N, Rossberg AG, Suslin V, Uyarra MC. Using ecological models to assess ecosystem status in support of the European Marine Strategy Framework Directive. Ecological Indicators. 2015; 58: 175-191. Available at: [Link].

Precioso CHO, Kalas FA, Rodrigues PPGW, Lugon Jr J. Avaliação da variabilidade de parâmetros ambientais numa lagoa urbana (Campos Dos Goytacazes, RJ) com auxílio so sistema MOHID. Boletim do Observatório Ambiental Alberto Ribeiro Lamego. 2010; 4(2): 185-204. Available at: [Link].

Portela LI, Neves R. Numerical modelling of suspended sediment transport in tidal estuaries: A comparison between the Tagus (Portugal) and the Scheldt (Belgium-the Netherlands). Netherlands Journal of Aquatic Ecology. 1994; 28(3-4): 329-335. Available at: [Link].

Póvoa P , A Nobre, P Leitão, P Galvão, H Santos, A Frazão, R Neves, JS Matos. Operational decision support system for large combined sewage systems: Lisbon / Tagus Estuary case study Reference. Water Science and Technology. 2015; 72(8): 1421-1427. Available at: [Link]

Ramos TB, Darouich H, Gonçalves MC, Brito D, Castelo Branco MA, Martins JC, Fernandes ML, Pires FP, Morais M, Neves R. An integrated analysis of the eutrophication process in the Enxoé Reservoir within the DPSIR framework. Water. 2018; 10(11):1576. Available at: [Download]

Ramos TB, Simionesei L, Jauch E, Almeida C, Neves R. Modelling soil water and maize growth dynamics influenced by shallow groundwater conditions in the Sorraia Valley region, Portugal. Agricultural Water Management. 2017; 185: 27-42. Available at: [Link].

Ramos TB, Simionesei L, Oliveira AR, Darouich H, Neves R. Assessing the Impact of LAI Data Assimilation on Simulations of the Soil Water Balance and Maize Development Using MOHID-Land. Water. 2018; 10(10): 1367. Available at: [Download]

Restrepo JC, Escobar J, Otero L, Franco D, Pierini J, Correa I. Factors influencing the distribution and characteristics of surface sediment in the Bay of Cartagena, Colombia. Journal of Coastal Research. 2017; 33(1): 135–148. Available at: [Link].

Ribeiro J, Silva A, Leitão P. High resolution tsunami modelling for the evaluation of potential risk areas in Setúbal (Portugal). Natural Hazards and Earth System Science. 2011; 11(8): 2371-2380. Available at: [Download].

Riflet G, Juliano M, Fernandes L, Leitão PC, Neves R. Operational ocean forecasting of the portuguese waters. Mercator-Ocean Quarterly Newsletter. 2008; 30: 20–32. Available at: [Download]

Rodrigues D, Fernandes A, Filippo A, Kjerfve B, Pinto L, Neves R. Low-frequency circulation on the Ilha Grande channel, Rio de Janeiro, Brazil. Regional Studies in Marine Science. 2022; 50:102129. Available at: [Link]

Rodríguez C, Fossatti M, Carrizo D, Sánchez-García L, Teixeira de Mello F, Weinstein F, Lozoya JP. Mesoplastics and large microplastics along a use gradient on the Uruguay Atlantic coast: Types, sources, fates, and chemical loads. Science of The Total Environment. 2020; 721: 137734. Available at: [Link]

Rosa A, Cardoso C, Vieira R, Faria R, Oliveira AR, Navarro G, Caldeira RMA. Impact of flash flood events on the coastal waters around Madeira island: The “Land Mass Effect”. Frontiers in Marine Science. 2022; 8:749638. Available at: [Download]

Rueda JG, Otero LJ, Pierini JO. Hydrodynamic characterization in a tropical estuary of South America with mixed microtidal regime (Cartagena Bay, Colombia). Boletín Científico CIOH. 2013; 31: 159-174. Available at: [Download] (In Spanish).

Ruiz-Villarreal M, Montero P, Taboada JJ, Prego R, Leitão PC, Pérez-Villar V. Hydrodynamic model study of the Ria de Pontevedra under estuarine conditions. Estuarine, Coastal and Shelf Science. 2002; 54(1): 101-113. Available at: [Link].

Sagarduy M, Courtois S, Del Campo A, Garmendia JM, Petrau A. Differential decay and prediction of persistence of Enterococcus spp. and Escherichia coli culturable cells and molecular markers in freshwater and seawater environments. International Journal of Hygiene and Environmental Health. 2019; 222(4): 695-704. Available at: [Link]

Salamena GG, Martins F, Ridd PV. The density-driven circulation of the coastal hypersaline system of the Great Barrier Reef, Australia. Marine Pollution Bulletin. 2016; 105(1): 277–285. Available at: [Link].

Salgueiro DV, de Pablo H, Neves R, Mateus M. Modelling the thermal effluent of a near coast power plant (Sines, Portugal). Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Zone Management. 2015; 15(4). Available at: [Download].

Sánchez-Gutiérrez R, Gómez-Castro C. Approaching to water quality modeling processes in a subwatershed. The Virilla River case in Costa Rica. Uniciencia. 2021; 35(1): 71-89. Available at: [Download] (In Spanish)

Santoro P, Fernández M, Fossati M, Cazes, G, Terra, R Piedra-Cueva, I. Pre-operational forecasting of sea level height for the Río de la Plata. Applied Mathematical Modelling. 2011; 35(5): 2462-2478. Available at: [Link].

Santoro PE, Fossati M, Piedra-Cueva I. Study of the meteorological tide in the Río de la Plata. Continental Shelf Research. 2013; 60: 51-63. Available at: [Link].

Santos A, Martins H, Coelho H, Leitão PC, Neves R. A circulation model for the European ocean margin. Applied Mathematical Modelling. 2002; 26(5): 563-582. Available at: [Link].

Santos A, Nogueira J, Martins H. Survival of sardine larvae off the Atlantic Portuguese coast: a preliminary numerical study. ICES Journal of Marine Science. 2005; 62(4): 634-644. Available at: [Link].

Santos L, Vaz L, Gomes NCM, Vaz N, Dias JM, Cunha Â, Almeida A. Impact of freshwater inflow on bacterial abundance and activity in the estuarine system Ria de Aveiro. Estuarine, Coastal and Shelf Science. 2014; 138: 107–120. Available at: [Link].

Saraiva S, Fernandes L, van der Meer J, Neves R, Kooijman SALM. The role of bivalves in the Balgzand: First steps on an integrated modelling approach. Ecological Modelling. 2017; 359(34-48). Available at: [Link].

Saraiva S, Freitas V, Ozório R, Rato A, Joaquim S, Matias D, Neves R. Mechanistic approach for oyster growth prediction under contrasting culturing conditions. Aquaculture. 2020; 522: 735105. Available at: [Link]

Saraiva S, Pina P, Martins F, Santos M, Braunschweig F, Neves R. Modelling the influence of nutrient loads on Portuguese estuaries. Hydrobiologia. 2007; 587(1): 5-18. Available at: [Link].

Saruwatari A, Ingram DM, Cradden L. Wave–current interaction effects on marine energy converters. Ocean Engineering. 2013; 73: 106-118. Available at: [Link].

Segurado P, Branco P, Jauch E, Neves R, Ferreira MT. Sensitivity of river fishes to climate change: The role of hydrological stressors on habitat range shifts. Science of The Total Environment. 2016; 562: 435-445. Available at: [Link].

Seiler LMN, Fernandes EHL, Martins F, Abreu PC. Evaluation of hydrologic influence on water quality variation in a coastal lagoon through numerical modeling. Ecological Modelling. 2015; 314: 44-61. Available at: [Link].

Seiler LMN, Fernandes EHL, Siegle E. Effect of wind and river discharge on water quality indicators of a coastal lagoon. Regional Studies in Marine Science. 2020; 40: 101513. Available at: [Link]

Silva A, Pinto L, Rodrigues SM, de Pablo H, Santos M, Moita T, Mateus M. A HAB warning system for shellfish harvesting in Portugal. Harmful Algae. 2016; 53: 33-39. Available at: [Link].

Silva E, Garbossa LHP, Nuñer APO, Lapa KR. Hydrodynamic modelling of the dispersion and deposition of biodeposits from marine bivalve mollusc farming under neap and spring tides in Santa Catarina Island Bays. Aquaculture. 2019; 501: 507-514. Available at: [Link]

Silva P, Martins F, Boski T, Sampath R. Modeling basin infilling processes in estuaries using two different approaches: an aggregate diffusive type model and a processed based model. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2012; 12(2): 127-129. Available at: [Download].

Simionesei L, Ramos TB, Brito D, Jauch E, Chambel-Leitão P, Almeida C, Neves R. Numerical simulation of soil water dynamics under stationary sprinkler irrigation with Mohid‐Land. Irrigation and Drainage. 2016; 65(1): 98-111. Available at: [Download]

Simionesei L, Ramos TB, Oliveira AR, Jongen M, Darouich H, Weber K, Proença V, Domingos T, Neves R. Modeling soil water dynamics and pasture growth in the montado ecosystem using MOHID Land. Water. 2018; 10(4): 489. Available at: [Download]

Simionesei L, Ramos TB, Palma J, Oliveira AR, Neves R. IrrigaSys: A web-based irrigation decision support system based on open source data and technology. Computers and Electronics in Agriculture. 2020; 178: 105822. Available at: [Link]

Soares J, Fernandes R, Brito D, Oliveira H, Neuparth T, Martins I, Santos MM. Environmental risk assessment of accidental marine spills: A new approach combining an online dynamic Hazardous and Noxious substances database with numerical dispersion, risk and population modelling. Science of The Total Environment. 2020; 715. Available at: [Link]

Sobrinho J, de Pablo H, Campuzano F, Neves R. Coupling Rivers and Estuaries with an Ocean Model: An Improved Methodology. Water. 2021; 13(16):2284. Available at: [Download]

Sobrinho J, de Pablo H, Pinto L, Neves R. Improving 3D-MOHID water model with an upscaling algorithm. Environmental Modelling & Software. 2021; 135: 104920. Available at: [Link]

Sousa MC, Vaz N, Alvarez I, Gomez-Gesteira M, Dias JM. Modeling the Minho River plume intrusion into the Rias Baixas (NW Iberian Peninsula). Continental Shelf Research. 2014; 85: 30-41. Available at: [Link].

Sousa MC, Vaz N, Alvarez I, Gomez-Gesteira M, Dias JM. Influence of the Minho River plume on the Rias Baixas (NW of the Iberian Peninsula). Journal of Marine Systems. 2014; 139: 248–260. Available at: [Link].

Taboada JJ, Prego R, Ruiz-villarreal M, Gomez-gesteira M, Montero P, Santos AP, Pérez-Villar V. Evaluation of the seasonal variations in the residual circulation in the Ría of Vigo (NW Spain) by means of a 3D baroclinic model. Estuarine, Coastal and Shelf Science. 1998; 47(5): 661-670. Available at: [Link].

Tavares LP, Lugon Jr J, da Silva JA, Wasserman JC, Rodrigues PP. Water management and urban flood mitigation: studies and proposals for the Macaé River basin in Brazil. Journal of Urban and Environmental Engineering. 2018; 12(2): 188-200. Available at: [Download]

Telles WR, Rodrigues PPGW, Silva Neto AJ. Calibração automática da plataforma MOHID empregando um método estocástico de otimização e dados reais de um evento climático extremo em Nova Friburgo‐RJ: parte 1 – preparação do modelo digital do terreno e aquisição dos dados experimentais de precipitação e nível. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería. 2017; 33(3-4): 164–170. Available at: [Link].

Telles WR, Rodrigues PPGW, Silva Neto AJ. Calibração automática da plataforma MOHID empregando um método estocástico de otimização e dados reais de um evento climático extremo em Nova Friburgo‐RJ: parte 2 – análise de sensibilidade e estimativa de parâmetros hidrológicos. Revista Internacional de Métodos Numéricos para Cálculo y Diseño en Ingeniería. 2017; 33(3-4): 204–211. Available at: [Link].

Tironi A, Marin VH, Campuzano FJ. A management tool for assessing aquaculture environmental impacts in Chilean Patagonian Fjords: integrating hydrodynamic and pellets dispersion models. Environmental Management. 2010; 45(5): 953-962. Available at: [Link].

Tironi A, Marin VH, Delgado LE. Un modelo hidrodinámico 3D del humedal del Rio Cruces: cálculo del tiempo de residencia utilizando MOHID. Revista Aqua-LAC. 2014; 6(2): 50-57. Available at: [Download]. (In Spanish)

Toderascu R, Rusu E. Numerical simulations of the current field in the Black Sea basin. Analele Universitatii Maritime Constanta. 2013; 14(19): 177-184. Available at: [Link].

Tosic M, Martins F, Lonin S, Izquierdo A, Restrepo JD. A practical method for setting coastal water quality targets: Harmonization of land-based discharge limits with marine ecosystem thresholds. Marine Policy. 2019; 108. Available at: [Link]

Tosic M, Martins F, Lonin S, Izquierdo A, Restrepo JD. Hydrodynamic modelling of a polluted tropical bay: Assessment of anthropogenic impacts on freshwater runoff and estuarine water renewal. Journal of Environmental Management. 2019; 236: 695-714. Available at: [Link].

Trancoso AR, Braunschweig F, Chambel Leitão P, Obermann M, Neves R. An advanced modelling tool for simulating complex river systems. The Science of the total environment. 2009; 407(8): 3004-3016. Available at: [Link].

Trancoso AR, Saraiva S, Fernandes L, Pina P, Leitão P, Neves R. Modelling macroalgae using a 3D hydrodynamic-ecological model in a shallow, temperate estuary. Ecological Modelling. 2005; 187(2-3): 232-246. Available at: [Link].

Tzoraki O, Nikolaidis NP, Trancoso R, Braunschweig F, Neves R. A reach-scale biogeochemical model for temporary rivers. Hydrological Processes. 2009; 23(2): 272-283. Available at: [Link].

U-Z

Uba F, Essandoh EO, Nyantakyi EK, Anumah P. Hydrodynamic model for operational forecasting in coastal waters of Ghana. Open Journal of Modelling and Simulation. 2020; 8(2): 99817. Available at: [Download]

Valle M, Chust G, Campo A, Wisz MS, Olsen SM, Garmendia JM, Borja A. Projecting future distribution of the seagrass Zostera noltii under global warming and sea level rise. Biological Conservation Biological Conservation. 2014; 170: 74–85. Available at: [Link].

Valentim JM, Vaz N, Silva H, Duarte B, Caçador I, Dias JM. Tagus Estuary and Ria de Aveiro salt marsh dynamics and the impact of sea level rise. Estuarine, Coastal and Shelf Science. 2013; 130:138-151. Available at: [Link].

Vargas CIC, Vaz N, Dias JM. An evaluation of climate change effects in estuarine salinity patterns: Application to Ria de Aveiro shallow water system. Estuarine, Coastal and Shelf Science. 2017; 189: 33-45. Available at: [Link].

Vaz N, Dias JM. Residual currents and transport pathways in the Tagus estuary, Portugal : the role of freshwater discharge and wind. Journal of Coastal Research. 2014; 70: 610–616. Available at: [Link].

Vaz N, Dias JM, Leitão P, Martins I. Horizontal patterns of water temperature and salinity in an estuarine tidal channel: Ria de Aveiro. Ocean Dynamics. 2005; 55(5-6): 416-429. Available at: [Link].

Vaz N, Dias JM, Leitão PC, Nolasco R. Application of the Mohid-2D model to a mesotidal temperate coastal lagoon. Computers & Geosciences. 2007; 33(9): 1204-1209. Available at: [Link].

Vaz N, Dias JM, Leitão PC. Three-dimensional modelling of a tidal channel: The Espinheiro Channel (Portugal). Continental Shelf Research. 2009; 29(1): 29-41. Available at: [Link].

Vaz N, Fernandes L, Leitão PC, Dias JM, Neves R. The Tagus estuarine plume induced by wind and river runoff: Winter 2007 case study. Journal of Coastal Research. 2009; SI(56): 1090-1094. Available at: [Download].

Vaz N, Leitão PC, Dias JM. Channel-ocean exchange driven by tides and river flow: Espinheiro Channel (Portugal). Water. 2007; SI(50): 1000-1004. Available at: [Download].

Vaz N, Mateus M, Dias JM. Semidiurnal and spring-neap variations in the Tagus Estuary: Application of a process-oriented hydro-biogeochemical model. Journal of Coastal Research. 2011; SI(64): 1619-1623. Available at: [Download]

Vaz N, Mateus M, Pinto L, Neves R, Dias JM. The Tagus Estuary as a numerical modeling test bed: A Review. Geosciences. 2020; 10(1):4. https://doi.org/10.3390/geosciences10010004

Vaz N, Mateus M, Plecha S, Sousa MC, Leitão PC, Neves R, Dias JM. Modeling SST and chlorophyll patterns in a coupled estuary-coastal system of Portugal: The Tagus case study, Journal of Marine Systems. 2015; 147: 123–137. Available at: [Link]

Vaz N, Rodrigues JG, Mateus M, Franz G, Campuzano F, Neves R, Dias JM. Subtidal variability of the Tagus river plume in winter 2013. Science of the Total Environment. 2018; 627: 1353–1362. Available at: [Link]

Vervoort RW, Fuentes I, Brombacher J, Degen J, Chambel-Leitão P, Santos F. Progress in developing scale-able approaches to field-scale water accounting based on remote sensing. Sustainability. 2022; 14:2732. Available at: [Download]

Viegas C, Neves R, Fernandes R, Mateus M. Modelling tools to support an early alert system for bathing water quality. Environmental Engineering and Management Journal. 2012; 11(5): 907-918. Available at: [Link].

Viegas CN, Nunes S. Streams contribution on bathing water quality after rainfall events in Costa do Estoril - a tool to implement an alert system for bathing water quality. Journal of Coastal Research. 2009; SI(56): 1691-1695. Available at: [Download].

Won SI, Kim SY, Kim KO. Submesoscale surface tidal, vortical, and residual circulations in a semi‐enclosed bay. Journal Geophysical Research: Ocean. 2019; 124. Available at: [Link]

Yeon S. Chang, Jae-Youll Jin, Jin Yong Choi, Weon Mu Jeong, Sang Kwon Hyun, Chang Soo Chung, Jong Dae Do. Three dimensional numerical modeling using a multi-level nesting system for identifying a Water layer suitable for scallop farming in Tongyeong, Korea. Aquacultural Engineering. 2020; 89. Available at: [Link]

Yong-Wook N, Yong-Hyuk K. Prediction of Drifter Trajectory Using Evolutionary Computation. Discrete Dynamics in Nature and Society. 2018; Article ID 6848745: 15 pages. Available at: [Link]

Journal Papers By Year

2022

Campuzano F, Santos F, Simionesei L, Oliveira AR, Olmedo E, Turiel A, Fernandes R, Brito D, Alba M, Novellino A, Neves R. Framework for improving land boundary conditions in ocean regional products. Journal of Marine Science and Engineering. 2022; 10(7):852. Available at: [Download].

Cloux S, Allen-Perkins S, de Pablo H, Garaboa-Paz D, Montero P, Pérez Muñuzuri V. Validation of a Lagrangian model for large-scale macroplastic tracer transport using mussel-peg in NW Spain (Ría de Arousa). Science of The Total Environment. 2022; 822:153338. Available at: [Download].

de Pablo H, Sobrinho J, Garaboa-Paz D, Fonteles C, Neves R, Gaspar MB. The influence of the river discharge on residence time, exposure time and integrated water fractions for the Tagus Estuary (Portugal). Frontiers in Marine Science. 2022; 8:734814. Available at: [Download].

Diez-Caballero K, Troiteiro S, García-Alba J, Vidal JR, González M, Ametller S, Juan R. Environmental Compatibility of the Parc Tramuntana Offshore Wind Project in Relation to Marine Ecosystems. Journal of Marine Science and Engineering. 2022; 10(7):898. Available at: [Download].

Ha SY, Yoon H-S, Kim Y-T. A study on the prediction of the surface drifter trajectories in the Korean Strait. Journal of Korean Society of Coastal and Ocean Engineers. 2022; 34(1): 11-18. Available at: [Download]. (In Korean)

Kim N-H, Baek D, Kwon J-i, Choi J-Y, Heo K-Y. Strategy for additional buoy array installation in operational buoy-observation network in Korea. Ocean Engineering. 2022; 112746. Available at: [Link].

Jackson M, Fossati M, Solari S. Sea levels dynamical downscaling and climate change projections at the Uruguayan coast. Frontiers in Marine Science. 2022; 9:846396. Available at: [Download].

Lourenço M da S, Mafra APP, Kalas F de A, Rodrigues PPGW, Ferreira MIP, Junior JL. Hydrological modelling applied to flooding assessment in the urban coastal city in Brazil. Ciência E Natura 2022; 44:e18. Available at: [Download].

Lubis MZ, Surya G, Pamungkas DS, Subhan B, Manik HM, Kausarian H, Anurogo W. Characteristics of waters during transitional season, Senimba waters. Trends in Sciences. 2022; 19(11): 4495. Available at: [Download].

Morato T, Juliano M, Pham CK, Carreiro-Silva M, Martins I, Colaço A. Modelling the dispersion of seafloor massive sulphide mining plumes in the mid Atlantic ridge around the Azores. Frontiers in Marine Science. 2022; 9:910940. Available at: [Download].

Nogueira E, Bravo I, Montero P, Díaz-Tapia P, Calvo S, Ben-Gigirey B, Figueroa RI, Garrido JL, Ramilo I, Lluch N, Rossignoli AE, Riobó P, Rodríguez F. HABs in coastal upwelling systems: Insights from an exceptional red tide of the toxigenic dinoflagellate Alexandrium minutum. Ecological Indicators. 2022; 137:108790. Available at: [Download].

Oliveira AR, Ramos TB, Simionesei L, Gonçalves MC, Neves R. Modeling Streamflow at the Iberian Peninsula Scale Using MOHID-Land: Challenges from a Coarse Scale Approach. Water. 2022; 14(7):1013. Available at: [Download].

Picado A, Abreu J, Carvalho DM, Santos H, Leitão P, Rodrigues J, Chambel Leitão J, Dias JM. Optimization of safe navigability conditions in shallow inland waters: The Routinav app. Ocean Engineering. 2022; 259: 111946. Available at: [Download].

Rodrigues D, Fernandes A, Filippo A, Kjerfve B, Pinto L, Neves R. Low-frequency circulation on the Ilha Grande channel, Rio de Janeiro, Brazil. Regional Studies in Marine Science. 2022; 50:102129. Available at: [Link].

Rosa A, Cardoso C, Vieira R, Faria R, Oliveira AR, Navarro G, Caldeira RMA. Impact of flash flood events on the coastal waters around Madeira island: The “Land Mass Effect”. Frontiers in Marine Science. 2022; 8:749638. Available at: [Download].

Torres-Bejarano F, García-Gallego J, Salcedo-Salgado J. Numerical modeling of nutrient transport to assess the agricultural impact on the trophic state of reservoirs. International Soil and Water Conservation Research. 2022; In Press. Available at: [Download].

Vervoort RW, Fuentes I, Brombacher J, Degen J, Chambel-Leitão P, Santos F. Progress in developing scale-able approaches to field-scale water accounting based on remote sensing. Sustainability. 2022; 14:2732. Available at: [Download].

2021

Barros YT, Lugon Jr J, Kalas FA, Watts Rodrigues PPG, da Silva Neto A. Identificação de trajetórias com uso das plataformas MoHid e GRIPP para aplicações ambientais. Proceeding Series of the Brazilian Society of Computational and Applied Mathematics. 2021; 8(1): 010423. Available at: [Download]

Contreras-Tereza VK, Salas-de-León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. The 2010 Gulf of Mexico oil spill: a modeling study. Arabian Journal of Geosciences. 2021; 14:636. Available at: [Link]

Contreras‐Tereza VK, Salas‐de‐León DA, Monreal‐Jiménez R, Monreal‐Gómez MA. Tsunami run‐up along the Zihuatanejo region, Mexican Pacific Coast: A modelling study. Journal of Flood Risk Management. 2021; 14:e12669. Available at: [Download]

Correia S, Picado A, de Montaudouin X, Freitas R, Rocha RJM, Dias JM, Magalhães L. Parasite assemblages in a bivalve host associated with changes in hydrodynamics. Estuaries and Coasts. 2021; 44:1036–1049. Available at: [Link]

Elvas LB, Mataloto BM, Martins AL, Ferreira JC. Disaster management in smart cities. Smart Cities. 2021; 4(2):819-839. Available at: [Download]

Evaristo A, Pinto L, Ascione Kenov I, Neves R. Hidrodinâmica da Baía do Lobito. Parte I - Correntes de maré. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 101-110. Available at: [Download]. (In Portuguese)

Evaristo A, Neves R, Pinto L, Sobrinho J. Hidrodinâmica da Baía do Lobito. Parte II - Escoamento Baroclínico. Revista de Gestão Costeira Integrada/Journal of Integrated Coastal Management. 2021; 21(2): 111-125. Available at: [Download]. (In Portuguese)

Franz G, Garcia CAE, Pereira J, de Freitas Assad LP, Rollnic M, Garbossa LHP, da Cunha LC, Lentini CAD, Nobre P, Turra A, Trotte-Duhá JR, Cirano M, Estefen SF, Lima JAM, Paiva AM, Noernberg MA, Tanajura CAS, Moutinho JL, Campuzano F, Pereira ES, Lima AC, Mendonça LFF, Nocko H, Machado L, Alvarenga JBR, Martins RP, Böck CS, Toste R, Landau L, Miranda T, dos Santos F, Pellegrini J, Juliano M, Neves R, Polejack A. Coastal ocean observing and modeling systems in Brazil: Initiatives and future perspectives. Frontiers in Marine Science. 2021; 8:681619. Available at: [Download]

Garbossa LHP, Santos AA, Lapa KR. Seaweed dispersion under different environmental scenarios based on branches settling velocity and hydrodynamic lagrangian model. Regional Studies in Marine Science. 2021; 47: 101909. Available at: [Download]

Herrera M, Wethey DS, Vázquez E, Macho G. Living on the edge: reproductive cycle of a boreal barnacle at its southernmost distribution limit. Marine Biology. 2021; 168: 100. Available at: [Link]

Jackson M, Sienra G, Santoro P, Fossati M. Temporal and spatial variability scales of salinity at a large microtidal estuary. Journal of Marine Science and Engineering. 2021; 9(8):860. Available at: [Download]

Keramea P, Spanoudaki K, Zodiatis G, Gikas G, Sylaios G. Oil spill modeling: A critical review on current trends, perspectives, and challenges. Journal of Marine Science and Engineering. 2021; 9(2):181. Available at: [Download]

Kim M, Ligaray M, Kwon YS, Kim S, Baek S, Pyo JC, Baek G, Shin J, Kim J, Lee C, Kim YM, Cho KH. Designing a marine outfall to reduce microbial risk on a recreational beach: Field experiment and modeling. Journal of Hazardous Materials. 2021; 409:124587. Available at: [Link]

Mills L, Janeiro J, Martins F. Effects of sea level rise on salinity and tidal flooding patterns in the Guadiana Estuary. Journal of Water and Climate Change. 2021; 12(7): 2933–2947. Available at: [Download]

Mittal HVR, Langodan S, Zhan P, Li S, Knio O, Hoteit I. Hazard assessment of oil spills along the main shipping lane in the Red Sea. Scientific Reports. 2021; 11:17078. Available at: [Download]

Monteiro CE, Cobelo-García A, Correia dos Santos MM, Caetano M. Drivers of Rh and Pt variability in the water column of a hydrodynamic estuary: Effects of contrasting environments. Science of The Total Environment. 2021; 760: 143909. Available at: [Link]

Oliveira AR, Ramos TB, Simionesei L, Gonçalves MC, Neves R. Modeling streamflow at the Iberian Peninsula scale using MOHID-Land: Challenges from a coarse scale approach. Water. 2022; 14(7):1013. Available at: [Download]

Otero LJ, Hernandez HI, Higgins Ae, Restrepo JC, Álvarez OA. Interannual and seasonal variability of stratification and mixing in a high-discharge micro-tidal delta: Magdalena River. Journal of Marine Systems. 2021; 224: 103621. Available at: [Link]

Ramos TB, Simionesei L, Oliveira AR, Neves R, Darouich H. Exploring the use of vegetation indices for validating crop transpiration fluxes computed with the MOHID-Land Model. Application to vineyard. Agronomy. 2021; 11(6): 1228. Available at: [Download]

Rhomad H, Khalil K, Neves R, Bougadir B, Elkalay K. Modeling investigation of the nutrients and phytoplankton dynamics in the Moroccan Atlantic coast: A case study of Agadir coast. Ecological Modelling. 2021; 447:109510. Available at: [Link]

Rosas E, Martins F, Janeiro J. Marine litter on the coast of the Algarve: main sources and distribution using a modeling approach. Journal of Marine Science and Engineering. 2021; 9(4):412. Available at: [Download]

Ruiz MS, Harari J, Ribeiro RB, Sampaio AFP. Numerical modelling of storm tides in the Estuarine System of Santos, São Vicente and Bertioga (SP, Brazil). Regional Studies in Marine Science. 2021; 44: 101791. Available at: [Link]

Salamanca JM, Álvarez-Silva O, Higgins A, Tadeo F. Analysis of the intake locations of salinity gradient plants using hydrodynamic and membrane models. Water. 2021; 13(9):1133. Available at: [Download]

Sales DS, Lugon Junior J, Oliveira VPS, Silva Neto AJ. Rainfall input from WRF-ARW atmospheric model coupled with MOHID land hydrological model for flow simulation in the Paraíba do Sul River - Brazil. Journal of Urban & Environmental Engineering. 2021; 15(2): 188-203. Available at: [Download]

Salisbury JE, Jönsson BF, Mannino A, Kim W, Goes JI, Choi J.-Y, Concha JA. Assessing net growth of phytoplankton biomass on hourly to annual time scales using the Geostationary Ocean Color Instrument. Geophysical Research Letters. 2021; 48: e2021GL095528. Available at: [Download]

Sánchez-Gutiérrez R, Gómez-Castro C. Approaching to water quality modeling processes in a subwatershed. The Virilla River case in Costa Rica. Uniciencia. 2021; 35(1): 71-89. Available at: [Download] (In Spanish)

Sobrinho J, de Pablo H, Campuzano F, Neves R. Coupling rivers and estuaries with an ocean model: An improved methodology. Water. 2021; 13(16):2284. Available at: [Download]

Sobrinho J, de Pablo H, Pinto L, Neves R. Improving 3D-MOHID water model with an upscaling algorithm. Environmental Modelling & Software. 2021; 135:104920. Available at: [Link]

Sotillo MG, Campuzano F, Guihou K, Lorente P, Olmedo E, Matulka A, Santos F, Amo-Baladrón MA, Novellino A. River freshwater contribution in operational ocean models along the European Atlantic Façade: Impact of a new river discharge forcing Data on the CMEMS IBI Regional Model solution. Journal of Marine Science and Engineering. 2021; 9(4):401. Available at: [Download]

Souza N, Lugon Jr J, Yamasaki E, da Silva Neto AJ, Kyriakides I. Parameter sensitivity study and water property influence: An evaluation of the determining factors on oil drifting effect. Revista Cereus. 2021; 13(1): 186-198. Available at: [Download]

2020

Capet A, Fernández V, She J, Dabrowski T, Umgiesser G, Staneva J, Mészáros L, Campuzano F, Ursella L, Nolan G, El Serafy G. Operational modeling capacity in European Seas — An EuroGOOS perspective and recommendations for improvement. Frontiers in Marine Science. 2020; 7: 129. Available at: [Download]