# Difference between revisions of "Keyword list"

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==MOHID Base 1== | ==MOHID Base 1== | ||

− | === Module Benthos=== | + | ===Module Benthos=== |

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleBenthos.F90 Source Code] | ||

+ | |||

{| class="wikitable" | {| class="wikitable" | ||

|- | |- | ||

− | |||

− | |||

! scope="col" |Keyword | ! scope="col" |Keyword | ||

! scope="col" |Keyword description | ! scope="col" |Keyword description | ||

! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

− | |||

− | |||

|BIOSI_DECAY_RATE | |BIOSI_DECAY_RATE | ||

|Biogenic silica dissolution rate | |Biogenic silica dissolution rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|DIATOMS | |DIATOMS | ||

|Compute diatoms mortality | |Compute diatoms mortality | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|DIATOMS_MORTALITY | |DIATOMS_MORTALITY | ||

|Diatoms mortality rate when deposited | |Diatoms mortality rate when deposited | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|DIATOMS_NC_RATIO | |DIATOMS_NC_RATIO | ||

|Diatoms Nitrogen/Carbon ratio | |Diatoms Nitrogen/Carbon ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|DIATOMS_PC_RATIO | |DIATOMS_PC_RATIO | ||

|Diatoms Phosphorus/Carbon ratio | |Diatoms Phosphorus/Carbon ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|DIATOMS_SIC_RATIO | |DIATOMS_SIC_RATIO | ||

|Diatoms Silica/Carbon ratio | |Diatoms Silica/Carbon ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|DT | |DT | ||

|Time step to compute benthic biogeochemical processes | |Time step to compute benthic biogeochemical processes | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|MIN_OXYGEN | |MIN_OXYGEN | ||

|Minimum oxygen concentration for mineralization to occur | |Minimum oxygen concentration for mineralization to occur | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|NC_RATIO | |NC_RATIO | ||

|Nitrogen/Carbon ratio of organic matter | |Nitrogen/Carbon ratio of organic matter | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|NITROGEN | |NITROGEN | ||

|Compute nitrogen processes | |Compute nitrogen processes | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|OXYGEN | |OXYGEN | ||

|Compute oxygen processes | |Compute oxygen processes | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PC_RATIO | |PC_RATIO | ||

|Phosphorus/Carbon ratio of organic matter | |Phosphorus/Carbon ratio of organic matter | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | rowspan="2" |PELAGIC_MODEL |

− | | | + | | rowspan="2" |Pelagic model name to which Module Benthos will be coupled |

− | | | + | |LifeModel |

− | |Pelagic model name to which | ||

− | | | ||

| | | | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

|- | |- | ||

− | | | + | |WaterQuality |

− | |||

− | |||

− | |||

− | |||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PHOSPHORUS | |PHOSPHORUS | ||

|Compute phosphorus processes | |Compute phosphorus processes | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PHYTO | |PHYTO | ||

|Compute phytoplankton mortality | |Compute phytoplankton mortality | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PHYTO_MORTALITY | |PHYTO_MORTALITY | ||

− | |Phytoplankton | + | |Phytoplankton mortality rate when deposited |

− | mortality rate when deposited | + | | |

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PHYTO_NC_RATIO | |PHYTO_NC_RATIO | ||

|Phytoplankton Nitrogen/Carbon ratio | |Phytoplankton Nitrogen/Carbon ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PHYTO_PC_RATIO | |PHYTO_PC_RATIO | ||

|Phytoplankton Nitrogen/Carbon ratio | |Phytoplankton Nitrogen/Carbon ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PON_DECAY_RATE | |PON_DECAY_RATE | ||

|Particulate organic nitrogen mineralization rate | |Particulate organic nitrogen mineralization rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|PON_DECAY_TFACTOR | |PON_DECAY_TFACTOR | ||

|Particulate Organic Nitrogen temperature influence factor in mineralization Rate | |Particulate Organic Nitrogen temperature influence factor in mineralization Rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|POP_DECAY_RATE | |POP_DECAY_RATE | ||

|Particulate organic phosphorus mineralization rate | |Particulate organic phosphorus mineralization rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|POP_DECAY_TFACTOR | |POP_DECAY_TFACTOR | ||

|Particulate Organic Phosphorus temperature influence factor in mineralization Rate | |Particulate Organic Phosphorus temperature influence factor in mineralization Rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | |||

− | |||

|SILICA | |SILICA | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

| | | | ||

|} | |} | ||

+ | |||

=== Module CEQUALW2=== | === Module CEQUALW2=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleCEQUALW2.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

Line 191: | Line 212: | ||

! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 196: | Line 220: | ||

|DTSECONDS | |DTSECONDS | ||

|time step, in seconds, between two CEQUALW2 calls | |time step, in seconds, between two CEQUALW2 calls | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 203: | Line 230: | ||

|NAME | |NAME | ||

|Algae Property name as defined on Module GlobalData | |Algae Property name as defined on Module GlobalData | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|} | |} | ||

+ | |||

=== Module Discharges=== | === Module Discharges=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDischarges.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

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! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 221: | Line 255: | ||

|ALTERNATIVE_LOCATIONS | |ALTERNATIVE_LOCATIONS | ||

|Activates the automatic search for alternative locations, when the discharge point is not a covered point | |Activates the automatic search for alternative locations, when the discharge point is not a covered point | ||

+ | |0/1 | ||

+ | |Inactive/Active | ||

+ | |0 | ||

+ | | | ||

+ | |Boolean | ||

+ | |- | ||

+ | | Base 1 | ||

+ | |Discharges | ||

+ | |COORD_X | ||

+ | |Longitude of the discharge in geographic coordinates | ||

+ | | | ||

+ | | | ||

+ | | | ||

+ | | | ||

+ | |Real | ||

+ | |- | ||

+ | | Base 1 | ||

+ | |Discharges | ||

+ | |COORD_Y | ||

+ | |Activates the automatic search for alternative locations, when the discharge point is not a covered point | ||

+ | |Latitude of the discharge in geographic coordinates | ||

+ | | | ||

| | | | ||

| | | | ||

+ | |Real | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

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|CREST_HEIGTH | |CREST_HEIGTH | ||

|Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow). | |Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow). | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 234: | Line 294: | ||

|Discharges | |Discharges | ||

|DATA_BASE_FILE | |DATA_BASE_FILE | ||

− | |Definition of the data base | + | |Definition of the data base time series file. If there is one, model assumes that the discharge is time variable |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 242: | Line 305: | ||

|DEFAULT_FLOW_VALUE | |DEFAULT_FLOW_VALUE | ||

|Default flow value | |Default flow value | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 249: | Line 315: | ||

|DEFAULT_VELOCITY_VALUE | |DEFAULT_VELOCITY_VALUE | ||

|Default velocity associated with the discharge. Important to compute momentum fluxes | |Default velocity associated with the discharge. Important to compute momentum fluxes | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 256: | Line 325: | ||

|DEFAULTVALUE | |DEFAULTVALUE | ||

|Water property value | |Water property value | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 263: | Line 335: | ||

|DESCRIPTION | |DESCRIPTION | ||

|Discharge description | |Discharge description | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 269: | Line 344: | ||

|Discharges | |Discharges | ||

|FLOW_COLUMN | |FLOW_COLUMN | ||

− | |Column where the flow is defined in the data base | + | |Column where the flow is defined in the data base time series file |

+ | | | ||

+ | | | ||

+ | | | ||

+ | | | ||

+ | | | ||

+ | |- | ||

+ | | rowspan="3" |Base 1 | ||

+ | | rowspan="3" |Discharges | ||

+ | | rowspan="3" |FLOW_DISTRIBUTION | ||

+ | | rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation | ||

+ | |by cell | ||

+ | | | ||

+ | | rowspan="3" | | ||

+ | | rowspan="3" | | ||

+ | | rowspan="3" | | ||

+ | |- | ||

+ | |by water column | ||

| | | | ||

+ | |- | ||

+ | |by volume | ||

| | | | ||

|- | |- | ||

Line 279: | Line 373: | ||

| | | | ||

| | | | ||

+ | | | ||

+ | | | ||

+ | | | ||

+ | |- | ||

+ | | Base 1 | ||

+ | |Discharges | ||

+ | |IGNORE_ON | ||

+ | |This keyword must be active for MOHID MPI runs | ||

+ | |0/1 | ||

+ | |Inactive/Active | ||

+ | |0 | ||

+ | | | ||

+ | |Boolean | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 286: | Line 393: | ||

| | | | ||

| | | | ||

+ | | | ||

+ | | | ||

+ | |Integer | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 293: | Line 403: | ||

| | | | ||

| | | | ||

+ | | | ||

+ | | | ||

+ | |Integer | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 300: | Line 413: | ||

| | | | ||

| | | | ||

+ | | | ||

+ | | | ||

+ | |Integer | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 305: | Line 421: | ||

|NAME | |NAME | ||

|Discharge name | |Discharge name | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

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|NODE_ID | |NODE_ID | ||

|ID of the discharge, when it isn't grid-based | |ID of the discharge, when it isn't grid-based | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 318: | Line 440: | ||

|Discharges | |Discharges | ||

|TIME_SERIE_COLUMN | |TIME_SERIE_COLUMN | ||

− | |This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the | + | |This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series. |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 325: | Line 450: | ||

|Discharges | |Discharges | ||

|U_COLUMN | |U_COLUMN | ||

− | |This keyword is used to give to model the column where the velocity X is defined in the data base | + | |This keyword is used to give to model the column where the velocity X is defined in the data base time series file |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 332: | Line 460: | ||

|Discharges | |Discharges | ||

|V_COLUMN | |V_COLUMN | ||

− | |This keyword is used to give to model the column where the velocity Y is defined in the data base | + | |This keyword is used to give to model the column where the velocity Y is defined in the data base time series file |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 339: | Line 470: | ||

|Discharges | |Discharges | ||

|WEIR_COEF | |WEIR_COEF | ||

− | |Weir | + | |Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow). |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 347: | Line 481: | ||

|WEIR_LENGTH | |WEIR_LENGTH | ||

|Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow). | |Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow). | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|} | |} | ||

+ | |||

=== Module DrainageNetwork=== | === Module DrainageNetwork=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleDrainageNetwork.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

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! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

|DrainageNetwork | |DrainageNetwork | ||

|ADVECTION_DIFUSION | |ADVECTION_DIFUSION | ||

− | |Compute advection and | + | |Compute advection and diffusion of property |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base 1 | + | | rowspan="2" |Base 1 |

− | |DrainageNetwork | + | | rowspan="2" |DrainageNetwork |

− | |ADVECTION_SCHEME | + | | rowspan="2" |ADVECTION_SCHEME |

− | |Numerical Discretization of Advection. | + | | rowspan="2" |Numerical Discretization of Advection. |

|1 | |1 | ||

|UpwindOrder1 (Upwind scheme of 1st order) | |UpwindOrder1 (Upwind scheme of 1st order) | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

|- | |- | ||

− | + | |5 | |

− | |||

− | |||

− | |||

− | |5 | ||

|CentralDif (Central differences scheme) | |CentralDif (Central differences scheme) | ||

|- | |- | ||

Line 386: | Line 529: | ||

|CHECK_NODES | |CHECK_NODES | ||

|Check nodes consistency in the drainage network file | |Check nodes consistency in the drainage network file | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 393: | Line 539: | ||

|CHECK_REACHES | |CHECK_REACHES | ||

|Check reaches consistency in the drainage network file (a reach connects 2 nodes) | |Check reaches consistency in the drainage network file (a reach connects 2 nodes) | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 400: | Line 549: | ||

|CONTINUOUS | |CONTINUOUS | ||

|Computations follow from another simulation | |Computations follow from another simulation | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 406: | Line 558: | ||

|DrainageNetwork | |DrainageNetwork | ||

|DATA_COLUMN | |DATA_COLUMN | ||

− | |Number of column in the time | + | |Number of column in the time series file with the downstream water depth values |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 414: | Line 569: | ||

|DEFAULT_VALUE | |DEFAULT_VALUE | ||

|Default value for water depth at the downstream boundary condition | |Default value for water depth at the downstream boundary condition | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 421: | Line 579: | ||

|DEFAULT_VALUE | |DEFAULT_VALUE | ||

|Default value for this property. Also used as initial value. | |Default value for this property. Also used as initial value. | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 428: | Line 589: | ||

|DESCRIPTION | |DESCRIPTION | ||

|Description of property | |Description of property | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 434: | Line 598: | ||

|DrainageNetwork | |DrainageNetwork | ||

|DIFFUSION_SCHEME | |DIFFUSION_SCHEME | ||

− | |Numerical Discretization of | + | |Numerical Discretization of Diffusion. |

|5 | |5 | ||

|CentralDif (Central Differences discretization) | |CentralDif (Central Differences discretization) | ||

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 442: | Line 609: | ||

|DIFFUSIVITY | |DIFFUSIVITY | ||

|Diffusivity of property | |Diffusivity of property | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 448: | Line 618: | ||

|DrainageNetwork | |DrainageNetwork | ||

|DISCHARGES | |DISCHARGES | ||

− | | | + | |Use module discharges |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base 1 | + | | rowspan="5" |Base 1 |

− | |DrainageNetwork | + | | rowspan="5" |DrainageNetwork |

− | |DOWNSTREAM_BOUNDARY | + | | rowspan="5" |DOWNSTREAM_BOUNDARY |

− | |Choose downstream boundary condition | + | | rowspan="5" |Choose downstream boundary condition |

|0 | |0 | ||

|Dam (flow at the outlet = 0.0) | |Dam (flow at the outlet = 0.0) | ||

+ | | rowspan="5" | | ||

+ | | rowspan="5" | | ||

+ | | rowspan="5" | | ||

|- | |- | ||

− | |||

− | |||

− | |||

− | |||

|1 | |1 | ||

|Normal (solves KynematicWave at the outlet) | |Normal (solves KynematicWave at the outlet) | ||

|- | |- | ||

− | |||

− | |||

− | |||

− | |||

|2 | |2 | ||

|ImposedWaterDepth | |ImposedWaterDepth | ||

|- | |- | ||

− | | Base 1 | + | |3 |

− | |DrainageNetwork | + | |ImposedWaterLevel |

− | |FILE_IN_TIME | + | |- |

− | |Downstream boundary condition evolution | + | |4 |

+ | |ImposedVelocity | ||

+ | |- | ||

+ | | rowspan="2" |Base 1 | ||

+ | | rowspan="2" |DrainageNetwork | ||

+ | | rowspan="2" |FILE_IN_TIME | ||

+ | | rowspan="2" |Downstream boundary condition evolution | ||

|NONE | |NONE | ||

|Constant evolution of downstream boundary condition (constant water depth) | |Constant evolution of downstream boundary condition (constant water depth) | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

|- | |- | ||

− | |||

− | |||

− | |||

− | |||

|TIMESERIE | |TIMESERIE | ||

− | |Reads a time | + | |Reads a time series with water depth for downstream boundary condition |

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 498: | Line 664: | ||

|FILENAME | |FILENAME | ||

|Path to the file with the downstream water depth time serie values | |Path to the file with the downstream water depth time serie values | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 504: | Line 673: | ||

|DrainageNetwork | |DrainageNetwork | ||

|GLOBAL_MANNING | |GLOBAL_MANNING | ||

− | |Assigns a Manning rugosity | + | |Assigns a Manning rugosity coefficient to all the drainage network channels |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base 1 | + | | rowspan="3" |Base 1 |

− | |DrainageNetwork | + | | rowspan="3" |DrainageNetwork |

− | |HYDRODYNAMIC_APROX | + | | rowspan="3" |HYDRODYNAMIC_APROX |

− | |Chooses the hydrodynamic approximation to be solved in the momentum equation | + | | rowspan="3" |Chooses the hydrodynamic approximation to be solved in the momentum equation |

|1 | |1 | ||

|KinematicWave (friction = slope gradient) | |KinematicWave (friction = slope gradient) | ||

+ | | rowspan="3" | | ||

+ | | rowspan="3" | | ||

+ | | rowspan="3" | | ||

|- | |- | ||

− | |||

− | |||

− | |||

− | |||

|2 | |2 | ||

|DiffusionWave (full St Venant equation except for advection) | |DiffusionWave (full St Venant equation except for advection) | ||

|- | |- | ||

− | |||

− | |||

− | |||

− | |||

|3 | |3 | ||

|DynamicWave (full St Venant equation) | |DynamicWave (full St Venant equation) | ||

Line 532: | Line 699: | ||

|DrainageNetwork | |DrainageNetwork | ||

|INITIAL_WATER_DEPTH | |INITIAL_WATER_DEPTH | ||

− | |Assigns an initial water depth to all channels. only if continuous computation is not | + | |Assigns an initial water depth to all channels. only if continuous computation is not chosen. |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 542: | Line 712: | ||

|CONSTANT | |CONSTANT | ||

|Constant initialization of property | |Constant initialization of property | ||

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 547: | Line 720: | ||

|MIN_VALUE | |MIN_VALUE | ||

|Minimum concentration of property. | |Minimum concentration of property. | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 554: | Line 730: | ||

|MIN_WATER_DEPTH | |MIN_WATER_DEPTH | ||

|Minimum water column for computations | |Minimum water column for computations | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 561: | Line 740: | ||

|NAME | |NAME | ||

|Name of property | |Name of property | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 568: | Line 750: | ||

|NETWORK_FILE | |NETWORK_FILE | ||

|Path to the file that describes nodes and reaches | |Path to the file that describes nodes and reaches | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 575: | Line 760: | ||

|TIME_SERIE | |TIME_SERIE | ||

|Output of property values in time series files. | |Output of property values in time series files. | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 582: | Line 770: | ||

|TIME_SERIE_LOCATION | |TIME_SERIE_LOCATION | ||

|Path to the file that has the time series location characteristics | |Path to the file that has the time series location characteristics | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 591: | Line 782: | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

+ | | | ||

+ | |- | ||

+ | | rowspan="2" |Base 1 | ||

+ | | rowspan="2" |DrainageNetwork | ||

+ | | rowspan="2" |XS_CALC | ||

+ | | rowspan="2" |Method to compute trapezoidal cross section | ||

+ | |1 | ||

+ | |Analytic | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

+ | |- | ||

+ | |2 | ||

+ | |Discretization dH | ||

|} | |} | ||

=== Module Life=== | === Module Life=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLife.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

Line 610: | Line 810: | ||

! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

Line 615: | Line 818: | ||

|AFFINITY_NH4 | |AFFINITY_NH4 | ||

|Affinity for NH4 uptake | |Affinity for NH4 uptake | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 622: | Line 828: | ||

|AFFINITY_NO3 | |AFFINITY_NO3 | ||

|Affinity for NO3 uptake | |Affinity for NO3 uptake | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 629: | Line 838: | ||

|AFFINITY_PO4 | |AFFINITY_PO4 | ||

|Affinity for PO4 uptake | |Affinity for PO4 uptake | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 636: | Line 848: | ||

|ALPHA_CHL | |ALPHA_CHL | ||

|Chl specific initial slop of P vs I curve | |Chl specific initial slop of P vs I curve | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 642: | Line 857: | ||

|Life | |Life | ||

|ASS_EFFIC | |ASS_EFFIC | ||

− | | | + | |Assimilation efficiency |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 649: | Line 867: | ||

|Life | |Life | ||

|ASS_EFFIC_LOW_O2 | |ASS_EFFIC_LOW_O2 | ||

− | | | + | |Assimilation efficiency @ low O2 |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 657: | Line 878: | ||

|ASSIMIL_EFFIC | |ASSIMIL_EFFIC | ||

|Assimilation efficiency | |Assimilation efficiency | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 664: | Line 888: | ||

|BIO_SI_DISS | |BIO_SI_DISS | ||

|Biogenic silica dissolution rate | |Biogenic silica dissolution rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 671: | Line 898: | ||

|CHL_DEGRAD_RATE | |CHL_DEGRAD_RATE | ||

|Chla degradation rate constant | |Chla degradation rate constant | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 678: | Line 908: | ||

|DENS_DEP_MORT | |DENS_DEP_MORT | ||

|Density-dependence mortality rate | |Density-dependence mortality rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 684: | Line 917: | ||

|Life | |Life | ||

|DOM_UP_KS | |DOM_UP_KS | ||

− | |Half saturation value for DOM uptake | + | |Half saturation value for DOM uptake |

− | + | | | |

| | | | ||

| | | | ||

− | |- | + | | |

+ | | | ||

+ | |- | ||

| Base 1 | | Base 1 | ||

|Life | |Life | ||

|DOMSL_BAC_KS | |DOMSL_BAC_KS | ||

|Bacteria mediated DOMsl Hydrolysis | |Bacteria mediated DOMsl Hydrolysis | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 700: | Line 938: | ||

|DOMSL_BAC_VMAX | |DOMSL_BAC_VMAX | ||

|Vmax for DOMsl Hydrolysis | |Vmax for DOMsl Hydrolysis | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 707: | Line 948: | ||

|EXC_DOM_SL_FRAC | |EXC_DOM_SL_FRAC | ||

|DOM diverted to semi-labile pool | |DOM diverted to semi-labile pool | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 714: | Line 958: | ||

|EXCRE_UP_FRAC | |EXCRE_UP_FRAC | ||

|Excreted fraction of uptake | |Excreted fraction of uptake | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 721: | Line 968: | ||

|EXU_NUT_STRESS | |EXU_NUT_STRESS | ||

|Exudation under nutrient stress | |Exudation under nutrient stress | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 728: | Line 978: | ||

|GRAZ_AVAIL | |GRAZ_AVAIL | ||

|Availability of Prey X | |Availability of Prey X | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 735: | Line 988: | ||

|GRAZ_UP_KS | |GRAZ_UP_KS | ||

|Half saturation value for uptake | |Half saturation value for uptake | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 742: | Line 998: | ||

|LIGHT_LIM_METHOD | |LIGHT_LIM_METHOD | ||

|Light limitation method | |Light limitation method | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 749: | Line 1,008: | ||

|LYS_REF_CON | |LYS_REF_CON | ||

|Lysis_Ref_Con | |Lysis_Ref_Con | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 756: | Line 1,018: | ||

|MASS_XEK | |MASS_XEK | ||

|Command to make a mass conservation test | |Command to make a mass conservation test | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 763: | Line 1,028: | ||

|MAX_ASSIMIL | |MAX_ASSIMIL | ||

|Maximal assimilation rate | |Maximal assimilation rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 770: | Line 1,038: | ||

|MAX_CHLN_RATIO | |MAX_CHLN_RATIO | ||

|Maximal Chl:N ratio | |Maximal Chl:N ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 777: | Line 1,048: | ||

|MAX_NC_RATIO | |MAX_NC_RATIO | ||

|Maximal N:C ratio | |Maximal N:C ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 784: | Line 1,058: | ||

|MAX_PC_RATIO | |MAX_PC_RATIO | ||

|Maximal P:C ratio | |Maximal P:C ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 791: | Line 1,068: | ||

|MAX_SPEC_UP_@10C | |MAX_SPEC_UP_@10C | ||

|Maximum specific uptake @ 10ºC | |Maximum specific uptake @ 10ºC | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 798: | Line 1,078: | ||

|MAX_STORE_FILL | |MAX_STORE_FILL | ||

|Maximal rate of storage filling | |Maximal rate of storage filling | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 805: | Line 1,088: | ||

|MIN_LYSIS | |MIN_LYSIS | ||

|Minimal lysis rate | |Minimal lysis rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 812: | Line 1,098: | ||

|MIN_NC_RATIO | |MIN_NC_RATIO | ||

|Minimal N:C ratio | |Minimal N:C ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 819: | Line 1,108: | ||

|MIN_PC_RATIO | |MIN_PC_RATIO | ||

|Minimal P:C ratio | |Minimal P:C ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 825: | Line 1,117: | ||

|Life | |Life | ||

|MIXOTROPHY | |MIXOTROPHY | ||

− | |Hability to | + | |Hability to perform mixotrophy |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 833: | Line 1,128: | ||

|MORT_DOM_SL_FRAC | |MORT_DOM_SL_FRAC | ||

|DOC_SL_Frac | |DOC_SL_Frac | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 840: | Line 1,138: | ||

|MORT_O2_DEP | |MORT_O2_DEP | ||

|Oxygen-dependent mortality rate | |Oxygen-dependent mortality rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 847: | Line 1,148: | ||

|MORT_POM_FRAC | |MORT_POM_FRAC | ||

|Fraction of mortality to POM | |Fraction of mortality to POM | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 854: | Line 1,158: | ||

|MORT_RATE | |MORT_RATE | ||

|Temperature-independent mortality rate | |Temperature-independent mortality rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 861: | Line 1,168: | ||

|NH4_Ks | |NH4_Ks | ||

|PO4 uptake affinity | |PO4 uptake affinity | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 867: | Line 1,177: | ||

|Life | |Life | ||

|NIT_IN_COEF | |NIT_IN_COEF | ||

− | |Nitrification inhibition | + | |Nitrification inhibition coefficient |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 875: | Line 1,188: | ||

|NIT_O_N_CONV | |NIT_O_N_CONV | ||

|Nitrification O:N consumption ratio | |Nitrification O:N consumption ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 882: | Line 1,198: | ||

|NITRIFRADLIM | |NITRIFRADLIM | ||

|Light radiation bellow which nitrification occurs | |Light radiation bellow which nitrification occurs | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 889: | Line 1,208: | ||

|NITRIFRATE | |NITRIFRATE | ||

|Nitrification rate | |Nitrification rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 896: | Line 1,218: | ||

|NO3_Ks | |NO3_Ks | ||

|NO3 uptake affinity | |NO3 uptake affinity | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 903: | Line 1,228: | ||

|NUT_STRESS_TRESHOLD | |NUT_STRESS_TRESHOLD | ||

|Nutrient stress threshold (sedimentation) | |Nutrient stress threshold (sedimentation) | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 910: | Line 1,238: | ||

|O2_CARB_CONVERS | |O2_CARB_CONVERS | ||

|Oxygen to carbon conversion factor | |Oxygen to carbon conversion factor | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 917: | Line 1,248: | ||

|O2_KS | |O2_KS | ||

|Oxygen half saturation constant | |Oxygen half saturation constant | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 924: | Line 1,258: | ||

|O2_LOW_ASS_EFIC | |O2_LOW_ASS_EFIC | ||

|Oxygen concentration bollow which ass efic is low | |Oxygen concentration bollow which ass efic is low | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 931: | Line 1,268: | ||

|PHOTOINHIBITION | |PHOTOINHIBITION | ||

|Photoinhibition | |Photoinhibition | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 938: | Line 1,278: | ||

|PO4_Ks | |PO4_Ks | ||

|PO4 uptake affinity | |PO4 uptake affinity | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 944: | Line 1,287: | ||

|Life | |Life | ||

|POM_BAC_KS | |POM_BAC_KS | ||

− | |Bacteria mediated POM Hydrolysis MM | + | |Bacteria mediated POM Hydrolysis MM constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 952: | Line 1,298: | ||

|POM_BAC_VMAX | |POM_BAC_VMAX | ||

|Vmax for POM Hydrolysis | |Vmax for POM Hydrolysis | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 959: | Line 1,308: | ||

|Q10_VALUE | |Q10_VALUE | ||

|Q10 value for temperature limitation | |Q10 value for temperature limitation | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 966: | Line 1,318: | ||

|REDFIELD_NC | |REDFIELD_NC | ||

|Redfield N:C ratio | |Redfield N:C ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 973: | Line 1,328: | ||

|REDFIELD_PC | |REDFIELD_PC | ||

|Redfield P:C ratio | |Redfield P:C ratio | ||

− | + | | | |

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 981: | Line 1,338: | ||

|REDFIELD_SiC | |REDFIELD_SiC | ||

|Standard Si:C ratio | |Standard Si:C ratio | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 988: | Line 1,348: | ||

|REF_TEMP | |REF_TEMP | ||

|Reference temperature | |Reference temperature | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 995: | Line 1,358: | ||

|REF_TEMP_Q10 | |REF_TEMP_Q10 | ||

|Reference temperature for Q10 method | |Reference temperature for Q10 method | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,002: | Line 1,368: | ||

|REL_EXCESS_SI | |REL_EXCESS_SI | ||

|Release rate of excess silicate | |Release rate of excess silicate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,009: | Line 1,378: | ||

|RESP_BASAL | |RESP_BASAL | ||

|Basal respiration rate | |Basal respiration rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,016: | Line 1,388: | ||

|RESP_FRAC_PROD | |RESP_FRAC_PROD | ||

|Respired fraction of production | |Respired fraction of production | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,023: | Line 1,398: | ||

|REST_RESP_@10C | |REST_RESP_@10C | ||

|Rest respiration @ 10ºC | |Rest respiration @ 10ºC | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,030: | Line 1,408: | ||

|SED_MIN | |SED_MIN | ||

|Minimal sedimentation rate | |Minimal sedimentation rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,037: | Line 1,418: | ||

|SED_NUT_STRESS | |SED_NUT_STRESS | ||

|Nutrient stress sedimentation rate | |Nutrient stress sedimentation rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,044: | Line 1,428: | ||

|SEDIM_MIN | |SEDIM_MIN | ||

|Minimal sedimentation rate | |Minimal sedimentation rate | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,051: | Line 1,438: | ||

|SEDIM_NUT_STRESS | |SEDIM_NUT_STRESS | ||

|Nutrient stress threshold (sedimentation) | |Nutrient stress threshold (sedimentation) | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,058: | Line 1,448: | ||

|SI_UPTAKE_KS | |SI_UPTAKE_KS | ||

|Silicate uptake Michaelis constant | |Silicate uptake Michaelis constant | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,065: | Line 1,458: | ||

|SILICA_USE | |SILICA_USE | ||

|Set Silica use by the producer | |Set Silica use by the producer | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,072: | Line 1,468: | ||

|TEMP_LIM_METHOD | |TEMP_LIM_METHOD | ||

|Temperature limitation method | |Temperature limitation method | ||

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|} | |} | ||

− | === Module | + | |

+ | === Module LightExtinction=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleLightExtinction.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

Line 1,085: | Line 1,485: | ||

! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |COEF_PARSONS_PORTELA |

− | | | + | |Correct Default Coefficient for Parsons Portela SW Radiation parameterisation |

+ | |Needs SW_EXTINCTION_TYPE: 4 | ||

| | | | ||

+ | |0.04 | ||

| | | | ||

+ | |Real | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |LW_EXTINCTION_COEF |

− | | | + | |Long-wave extinction coeficient |

| | | | ||

| | | | ||

− | | | + | |0.333 |

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |LW_EXTINCTION_COLUMN |

− | | | + | | |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

+ | |- | ||

+ | | rowspan="2" |Base 1 | ||

+ | | rowspan="2" |LightExtinction | ||

+ | | rowspan="2" |LW_EXTINCTION_TYPE | ||

+ | | rowspan="2" |The method used in light extinction estimate | ||

+ | |1 | ||

+ | |Constant | ||

+ | | rowspan="2" |1 | ||

+ | | rowspan="2" | | ||

+ | | rowspan="2" | | ||

+ | |- | ||

+ | |5 | ||

+ | |Ascii file | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | + | |LW_PERCENTAGE | |

− | |||

− | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | | | + | |0.4 |

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |SW_EXTINCTION_COEF |

− | + | |Short-wave extinction coeficient | |

− | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

+ | |0.05 | ||

| | | | ||

+ | |Real | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |SW_EXTINCTION_COLUMN |

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base 1 | + | | rowspan="6" |Base 1 |

− | | | + | | rowspan="6" |LightExtinction |

− | | | + | | rowspan="6" |SW_EXTINCTION_TYPE |

− | | | + | | rowspan="6" |The method used in light extinction estimate |

− | | | + | |1 |

− | | | + | |Constant |

+ | | rowspan="6" |1 | ||

+ | | rowspan="6" | | ||

+ | | rowspan="6" | | ||

+ | |- | ||

+ | |2 | ||

+ | |Parsons Ocean | ||

+ | |- | ||

+ | |3 | ||

+ | |Portela-Tagus Estuary | ||

+ | |- | ||

+ | |4 | ||

+ | |Combined Parsons-Portela | ||

+ | |- | ||

+ | |5 | ||

+ | |Ascii file | ||

+ | |- | ||

+ | |6 | ||

+ | |Multiparameter | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |SW_KW |

− | | | + | |Short wave absorption coefficient |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |SW_LW_EXTINCTION_FILE |

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |LightExtinction |

− | | | + | |SW_PERCENTAGE |

− | | | + | | |

| | | | ||

| | | | ||

− | | | + | |0.6 |

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

+ | |} | ||

+ | |||

+ | === Module MacroAlgae=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleMacroAlgae.F90 Source Code] | ||

+ | {| class="wikitable" | ||

+ | |- | ||

+ | ! scope="col" |Project | ||

+ | ! scope="col" |Module | ||

+ | ! scope="col" |Keyword | ||

+ | ! scope="col" |Keyword description | ||

+ | ! scope="col" |Options | ||

+ | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |BEACHED_MORT_RATE |

− | | | + | |Beached drifting macroalgae mortality rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 1,242: | Line 1,644: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |DEPLIM |

− | | | + | |Maximum SPM deposition flux allowed for macroalgae to grow |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,249: | Line 1,654: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |DISSDON |

− | | | + | |fraction of dissolved organic material excreted by macroalgae |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,256: | Line 1,664: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |DT |

− | | | + | |Time step compute macroalgae biogeochemical processes |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,263: | Line 1,674: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |ENDREPC |

− | |Macroalgae | + | |Macroalgae endogenous respiration rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,270: | Line 1,684: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |EROCRITSS |

− | | | + | |Critical shear stress for macroalgae detachment to occur |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,277: | Line 1,694: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |EXCRCONS |

− | | | + | |Macroalgae excretion rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 1,291: | Line 1,704: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |GRAZCONS |

− | | | + | |Grazing rate over macroalgae |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 1,305: | Line 1,714: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |GROWMAX |

− | | | + | |macroalgae maximum growth rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 1,319: | Line 1,724: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |MACROALGAE_MINCONC |

− | | | + | |Minimum residual value for macroalgae abundance |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 1,326: | Line 1,734: | ||

| Base 1 | | Base 1 | ||

|MacroAlgae | |MacroAlgae | ||

− | | | + | |MIN_OXYGEN |

− | | | + | |Minimum oxygen concentration for macroalgae growth |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |MORTCON |

− | | | + | |Macroalgae mortality half saturation constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |MORTMAX |

− | | | + | |Macroalgae natural mortality rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |NITROGEN |

− | | | + | |Defines if the user wishes to compute the nitrogen cycle |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |NSATCONS |

− | | | + | |nitrogen half-saturation constant for macroalgae |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |PELAGIC_MODEL |

− | | | + | |Pelagic biogeochemical module coupled |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |PHOSPHORUS |

− | | | + | |Defines if the user wishes to compute the phosphorus cycle |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |PHOTOIN |

− | | | + | |macroalgae optimum radiation value |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |PHOTORES |

− | | | + | |Macroalgae photorespiration rate |

− | + | | | |

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |PSATCONS |

− | | | + | |phosphorus half-saturation constant for macroalgae |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |RATIONC |

− | | | + | |Macroalgae nitrogen/carbon ratio |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |RATIOPC |

− | | | + | |Macroalgae phosphorus/carbon ratio |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |SALT_EFFECT |

− | | | + | |Include salinity limitation on macroalgae growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |SALTCRIT |

− | | | + | |Macroalgae critical salinity limit growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |SALTMAX |

− | | | + | |Macroalgae maximum salinity for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |SALTMIN |

− | | | + | |Macroalgae minimum salinity for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |SALTOPT |

− | | | + | |Macroalgae optimum salinity for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |SOLEXCR |

− | | | + | |Fraction of soluble inorganic material excreted by macroalgae |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TCONST1 |

− | | | + | |Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TCONST2 |

− | | | + | |Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TCONST3 |

− | | | + | |Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TCONST4 |

− | | | + | |Constant to control temperature response curve shape |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TMIN |

− | | | + | |Macroalgae minimum temperature for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TOPTMAX |

− | | | + | |Macroalgae optimum maximum temperature for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |MacroAlgae |

− | | | + | |TOPTMIN |

− | | | + | |Macroalgae optimum minimum temperature for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

+ | |} | ||

+ | |||

+ | === Module Profile=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleProfile.F90 Source Code] | ||

+ | {| class="wikitable" | ||

+ | |- | ||

+ | ! scope="col" |Project | ||

+ | ! scope="col" |Module | ||

+ | ! scope="col" |Keyword | ||

+ | ! scope="col" |Keyword description | ||

+ | ! scope="col" |Options | ||

+ | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |Profile |

− | | | + | |DT_OUTPUT_TIME |

− | | | + | |Time step to perform profile outputs in HDF5 |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |Profile |

− | | | + | |LOCALIZATION_I |

− | | | + | |Grid cell index I where to perform profile output |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |Profile |

− | | | + | |LOCALIZATION_J |

− | | | + | |Grid cell index J where to perform profile output |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |Profile |

− | | | + | |NAME |

− | | | + | |Name of profile output |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|} | |} | ||

− | === Module | + | |

+ | === Module SedimentQuality=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleSedimentQuality.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

Line 1,700: | Line 2,048: | ||

! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Coefficient for labile OM decay rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Acoef for Heterotrophs decay rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Acoef for Autotrophs C specific decay (death) Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Acoef for the Anaerobic C specific decay (death) Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Calculates the AmmoniaToNitrate (nitrification) specific Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |A coef for the AmmoniaImobilization specific Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Acoef for for the NitrateToNgas specific Rate (denitrification) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Acoef |

− | | | + | |Acoef for the NitrateImobilization specific Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |Activation Energy for labil organic mater carbon decay rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |Coeficient for refractory OM decay rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |AE for Heterotrophs decay rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |AE activation energy for the Autotrophs C specific decay (death) Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |AE for the Anaerobic C specific decay (death) Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |Calculates the AmmoniaToNitrate (nitrification) specific Rate. |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |Calculates the AmmoniaImobilization specific Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |Activation Energy for the NitrateToNgas specific Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |ActivationE |

− | | | + | |Activation Energy for the NitrateImobilization specific Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |CARBON |

− | | | + | |Determines if calculations of carbon related properties is performed |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |CARBON_EFICIENCY |

− | | | + | |Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2 |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |CARBON_EFICIENCY |

− | | | + | |Carbon assimilation efficiency for Anaerobic population |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |CN_RATIO |

− | | | + | |CN ratio of Hetrotrophs biomass |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |CN_RATIO |

− | | | + | |CN ratio of Autotrophs biomass |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |CN_RATIO |

− | | | + | |CN ratio of anaerobic population. |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |DTSECONDS |

− | | | + | |Time step for sediment quality calculation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |EXPLICIT |

− | | | + | |Sistem is solved with explicit formulation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |MINIMUM_POPULATION |

− | | | + | |Minimum population for death rate to occur (below value no death) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |MINIMUM_POPULATION |

− | | | + | |Minimum population for death rated to take place |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |MINIMUM_POPULATION |

− | | | + | |Minimum population for death rate top occur |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |NITROGEN |

− | | | + | |Option to activate or deactivate the calculation of Nitrogen related properties |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |NITROGEN_EFICIENCY |

− | | | + | |NITROGEN EFICIENCY for autotrophic population |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |NITROGEN_EFICIENCY |

− | | | + | |Nitrogen assimilation efficiency of anaerobic population |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |POPULATION_CARBON_RATIO |

− | | | + | |Convertion form carbon concentration to population for Anaerobic populations |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |POPULATION_CARBON_RATIO |

− | | | + | |COnversion form Carbon mass of hetrotrphs to population nºs |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |POPULATION_CARBON_RATIO |

− | | | + | |Convertion form carbon biomass to nº of individual cells |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Temperature for Autotrophs C specific decay (death) Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Optimum temperature for the Anaerobic C specific decay (death) Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Optimum temperature for the AmmoniaImobilization specific Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |OPtimum temperature for the NitrateToNgas specific Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Optimum temperature for the NitrateImobilization specific Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Optimum temperature for decay rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

− | | | + | |SedimentQuality |

− | | | + | |Temperature |

− | | | + | |Optimum Temperature for rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

+ | |} | ||

+ | |||

+ | === Module WaterQuality=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase1/ModuleWaterQuality.F90 Source Code] | ||

+ | {| class="wikitable" | ||

+ | |- | ||

+ | ! scope="col" |Project | ||

+ | ! scope="col" |Module | ||

+ | ! scope="col" |Keyword | ||

+ | ! scope="col" |Keyword description | ||

+ | ! scope="col" |Options | ||

+ | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |AFG |

− | | | + | |Growth coefficient dependent of fishfood availability HalfSaturationConstant |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,228: | Line 2,499: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |AGE |

− | | | + | |Water "Age" : Lagrangean property |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,235: | Line 2,509: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |ASS_EFIC |

− | |Phytoplankton: | + | |Phytoplankton: Assimilation efficiency of flagellates by the zooplankton |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,242: | Line 2,519: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |ATG |

− | | | + | |Growth coefficient dependent of temperature |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,249: | Line 2,529: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |ATZ |

− | | | + | |Death coefficient dependent of temperature |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,256: | Line 2,539: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |AWG |

− | | | + | |Growth coefficient dependent of larvae weight |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,263: | Line 2,549: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |AWZ |

− | | | + | |Death coefficient dependent of larvae weight |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,270: | Line 2,559: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BACINGCIL |

− | | | + | |Ciliates: Proportion of bacteria in microzooplankton ingestion |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,277: | Line 2,569: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BACMINSUB |

− | | | + | |Bacteria: Minimum substract concentration for bacteria uptake |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,284: | Line 2,579: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BACNCONS |

− | | | + | |Bacteria: Half-saturation constant for bacteria nutrient uptake |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,291: | Line 2,589: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BACTERIA |

− | | | + | |Bacteria: Processes Simulation |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,298: | Line 2,599: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BACTRATIOOC |

− | | | + | |Oxygen: Bacteria Oxygen/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,305: | Line 2,609: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BARESPCO |

− | | | + | |Bacteria: Excretion Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,312: | Line 2,619: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BMAXUPTA |

− | | | + | |Bacteria: Maximum nutrient uptake at the reference temperature |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,319: | Line 2,629: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BOD |

− | | | + | |BOD: Processes Simulation |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,326: | Line 2,639: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BODCOEF |

− | | | + | |BOD: BOD oxidation coefficient |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,340: | Line 2,649: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BODOSSAT |

− | | | + | |BOD: Oxygen limitation half-saturation constant |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,354: | Line 2,659: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BODREF |

− | | | + | |BOD: BOD oxidation at the reference temperature |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,368: | Line 2,669: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BRATIONC |

− | | | + | |Bacteria: Nitrogen/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,375: | Line 2,679: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BTG |

− | | | + | |Growth coefficient dependent of temperature |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,382: | Line 2,689: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BTZ |

− | | | + | |Death coefficient dependent of temperature |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,389: | Line 2,699: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BWG |

− | | | + | |Growth coefficient dependent of larvae weight |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,396: | Line 2,709: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |BWZ |

− | | | + | |Death coefficient dependent of larvae weight |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,403: | Line 2,719: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CEXCCONS |

− | |Ciliates: | + | |Ciliates: Excretion constant curve |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,410: | Line 2,729: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CEXCFAC |

− | | | + | |Ciliates: Excretion factor |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,417: | Line 2,739: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILBACASS |

− | | | + | |Ciliates: Assimilation coefficient of bacteria by microzooplankton |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,424: | Line 2,749: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILCORATIO |

− | | | + | |Oxygen: Oxygen/Carbon ratio in microzooplankton respiration |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,431: | Line 2,759: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILEFFCAPBA |

− | | | + | |Ciliates: Capture efficiency of bacteria |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,438: | Line 2,769: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILEFFCAPPHY |

− | | | + | |Ciliates: Capture efficiency of phytoplankton |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,445: | Line 2,779: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILIATE |

− | | | + | |Ciliates: Processes Simulation |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,452: | Line 2,789: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILPHYASS |

− | | | + | |Ciliates: Assimilation coefficient of flagellates by microzooplankton |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,459: | Line 2,799: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILPREYMIN |

− | | | + | |Ciliates: Minimum prey concentration for grazing |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,466: | Line 2,809: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CILRATINGZOO |

− | | | + | |Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,480: | Line 2,819: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CINGMAX |

− | | | + | |Ciliates: Maximum ingestion rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,494: | Line 2,829: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CRATIONC |

− | | | + | |Ciliates: Nitrogen/Carbon Ratio |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,508: | Line 2,839: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CRATIOPC |

− | | | + | |Ciliates: Phosphorus/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,515: | Line 2,849: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |CREFRESP |

− | | | + | |Ciliates: Carbon consumption rate by respiration |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,522: | Line 2,859: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DENITREF |

− | | | + | |Nitrogen: Reference denitirfication rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,529: | Line 2,869: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DENSATCO |

− | | | + | |Nitrogen: Denitrification half-saturation constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,536: | Line 2,879: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIASS_EFIC |

− | | | + | |Diatoms: Assimilation efficiency of diatoms by zooplankton |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,543: | Line 2,889: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIATOMS |

− | | | + | |Diatoms: Processes Simulation |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,550: | Line 2,899: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIDISSDON |

− | | | + | |Diatoms: Fraction of dissolved organic material in excretions |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,557: | Line 2,909: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIEXCRCONS |

− | | | + | |Diatoms: Excretion constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,564: | Line 2,919: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIFENDREPC |

− | | | + | |Diatoms: Endogenous respiration constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,571: | Line 2,929: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIGRAZMIN |

− | | | + | |Zooplankton: Minimum diatoms concentration for grazing |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,578: | Line 2,939: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIGROWMAX |

− | | | + | |Diatoms: Maximum gross growth rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,585: | Line 2,949: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIMORTCON |

− | | | + | |Diatoms: Mortality half-saturation Constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,592: | Line 2,959: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIMORTMAX |

− | | | + | |Diatoms: Maximum Mortality Rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,599: | Line 2,969: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DINSATCONS |

− | | | + | |Diatoms: Nitrogen half-saturation constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,606: | Line 2,979: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIPHOTOIN |

− | | | + | |Diatoms: Optimum light intensity for photosynthesis |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,620: | Line 2,989: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIPHOTORES |

− | | | + | |Diatoms: Fraction of actual photosynthesis oxidized by photorespiration |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,634: | Line 2,999: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIPSATCONS |

− | |Phosphorus | + | |Diatoms: Phosphorus half-saturation constant |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,648: | Line 3,009: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIRATINGZOO |

− | | | + | |Zooplankton: Proportion of diatoms in mesozooplankton ingestion |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,655: | Line 3,019: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIRATIONC |

− | | | + | |Diatoms: Nitrogen/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,662: | Line 3,029: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIRATIOPC |

− | | | + | |Diatoms: Phosphorus/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,669: | Line 3,039: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIRATIOSIC |

− | |Silica | + | |Diatoms: Silica/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,676: | Line 3,049: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DISISATCONS |

− | | | + | |Diatoms: Silicate half-saturation constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,683: | Line 3,059: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DISOLEXCR |

− | | | + | |Diatoms: Fraction of soluble inorganic material in excretions |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,690: | Line 3,069: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITCONST1 |

− | | | + | |Diatoms: Constant to control temperature response curve shape |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,697: | Line 3,079: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITCONST2 |

− | | | + | |Diatoms: Constant to control temperature response curve shape |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,704: | Line 3,089: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITCONST3 |

− | | | + | |Diatoms: Constant to control temperature response curve shape |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,711: | Line 3,099: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITCONST4 |

− | | | + | |Diatoms: Constant to control temperature response curve shape |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,718: | Line 3,109: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITMAX |

− | | | + | |Diatoms: Maximum temperature tolerable for growth |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,725: | Line 3,119: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITMIN |

− | | | + | |Diatoms: Minimum tolerable temperature for growth |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,732: | Line 3,129: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITOPTMAX |

− | | | + | |Diatoms: Maximum temperature of the optimal interval for photosynthesis |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,739: | Line 3,139: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DITOPTMIN |

− | | | + | |Diatoms: Minimum temperature of the optimal interval for photosynthesis |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,746: | Line 3,149: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIZOASS |

− | | | + | |Zooplankton: Assimilation coefficient of diatoms by mesozooplankton |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,760: | Line 3,159: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DIZOOEFFCAP |

− | | | + | |Zooplankton: Capture efficiency of diatoms |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,774: | Line 3,169: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |DTSECONDS |

− | | | + | |Time step for water quality processes calculation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,788: | Line 3,179: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |EXCRCONS |

− | | | + | |Phytoplankton: Excretion constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,795: | Line 3,189: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |EXPLICIT |

− | | | + | |Explicit Method |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,802: | Line 3,199: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FDISSDON |

− | | | + | |Phytoplankton: Fraction of dissolved organic material in excretions |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,809: | Line 3,209: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FENDREPC |

− | |Phytoplankton: | + | |Phytoplankton: Endogenous respiration constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,816: | Line 3,219: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FINAL_AGE |

− | | | + | |Larvae Final Age |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,823: | Line 3,229: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FINAL_LENGTH |

− | | | + | |Larvae Final Length |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,830: | Line 3,239: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FISHFOOD_REF |

− | | | + | |Reference food availability |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,837: | Line 3,249: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FMORTCON |

− | | | + | |Phytoplankton: Mortality half saturation rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,844: | Line 3,259: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FMORTMAX |

− | | | + | |Phytoplankton: Maximum mortality |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,851: | Line 3,269: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FRATIONC |

− | | | + | |Phytoplankton: Nitrogen/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,858: | Line 3,279: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FRATIOPC |

− | | | + | |Phytoplankton: Phosphorus/Carbon ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,865: | Line 3,289: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FREGSATC |

− | | | + | |Nutrients: Nutrient regeneration half-saturation rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,872: | Line 3,299: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |FSOLEXCR |

− | | | + | |Phytoplankton: Fraction of soluble inorganic in excretions |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,879: | Line 3,309: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |GRAZBACMIN |

− | | | + | |Ciliates: Minimum flagellates concentration for grazing |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,886: | Line 3,319: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |GRAZCILMIN |

− | |Zooplankton: | + | |Zooplankton: Minimum microzooplankton concentration for grazing |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,900: | Line 3,329: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |GRAZFITOMIN |

− | |Zooplankton: | + | |Zooplankton: Minimum fagellates concentration for grazing |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,914: | Line 3,339: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |GROWMAXF |

− | | | + | |Phytoplankton: Maximum growth rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

Line 2,928: | Line 3,349: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |GROWMAXZ |

− | |Zooplankton: | + | |Zooplankton: Maximum zooplankton growth rate |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,935: | Line 3,359: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |IMPLICIT |

− | | | + | |Implicit Method Calculation |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,942: | Line 3,369: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |INGCONSC |

− | | | + | |Ciliates: Half-saturation constant for grazing |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,949: | Line 3,379: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |INGCONSZ |

− | |Zooplankton: | + | |Zooplankton: Half-saturation constant for predation |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,956: | Line 3,389: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |INIT_AGE |

− | | | + | |Larvae Inital Age |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,963: | Line 3,399: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |INIT_LENGTH |

− | | | + | |Larvae Inital Length |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,970: | Line 3,409: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |INTER_AGE |

− | | | + | |Larvae Intermediate Age |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,977: | Line 3,419: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |INTER_LENGTH |

− | | | + | |Larvae Intermediate Length |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,984: | Line 3,429: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |IVLEVCON |

− | |Zooplankton: | + | |Zooplankton: Ivlev grazing constant |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

Line 2,991: | Line 3,439: | ||

| Base 1 | | Base 1 | ||

|WaterQuality | |WaterQuality | ||

− | | | + | |LARVAE |

− | | | + | |Larvae Processes Simulation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |LDENSITY |

− | | | + | |Larvae density factor |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |LSHAPE |

− | | | + | |Larvae shape factor |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |MAXMORTCI |

− | | | + | |Ciliates: Maximum Mortality Rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | + | |WaterQuality | |

− | + | |MAXMORTZ | |

− | + | |Zooplankton: Maximum mortality rate | |

− | + | | | |

− | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | | | ||

− | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |MINMORTCI |

− | | | + | |Ciliates: Minimum Mortality rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |MINMORTZ |

− | | | + | |Zooplankton: Minimum mortality rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |MINOXYGEN |

− | | | + | |Oxygen: Minimum oxygen concentration allowed |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |MORTCICOEF |

− | | | + | |Ciliates: Mortality coefficient |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |MORTZCOEF |

− | | | + | |Zooplankton: Shape factor for the mortality curve of zooplankton |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NATMORB |

− | | | + | |Bacteria: Natural mortality rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NITONRAT |

− | | | + | |Oxygen: Oxygen/Carbon in Nitrate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NITRIREF |

− | | | + | |Nitrogen: Reference nitrification rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NITROGEN |

− | | | + | |Nitrogen: Biogeochemical Processes Simulation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NITSATCO |

− | | | + | |Nitrogen: Nitrification half-saturation constant |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NMINENR |

− | | | + | |Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NMINR |

− | | | + | |Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

|- | |- | ||

− | + | | Base 1 | |

− | + | |WaterQuality | |

− | + | |NOPCOEF | |

− | + | |Nitrogen: PON decomposition temperature coefficient | |

− | + | | | |

− | |||

− | |||

− | | | ||

− | | | ||

− | | | ||

− | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NOPREF |

− | | | + | |Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |NPHASES |

− | | | + | |Number of larvae phases (valid values are 1 and 2) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | + | |WaterQuality | |

− | + | |NSATCONS | |

− | + | |Phytoplankton: Nitrogen half-saturation constant | |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | | | ||

− | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |OCRATIO |

− | | | + | |Oxygen: Oxygen/Carbon in CO2 |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |OMRATIONC |

− | | | + | |Oxygen: Organic Matter Nitrogen/Carbon Ratio |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |OMRATIOPC |

− | | | + | |Oxygen: Organic Matter Phosphorus/Carbon Ratio |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHDECOMP |

− | | | + | |Nitrogen: Fraction of PON available for mineralization |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHOSOPRAT |

− | | | + | |Oxygen: Oxygen/Carbon in Phosphate |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHOSPHOR |

− | | | + | |Phosphorus: Biogeochemical Processes Simulation |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHOTOIN |

− | | | + | |Phytoplankton: Optimum light intensity for photosyntesis |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHOTORES |

− | | | + | |Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration |

− | + | | | |

− | + | | | |

− | | | + | | |

− | | | ||

− | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHOTOSOC |

− | | | + | |Oxygen: Photosynthesis Oxygen/Carbon ratio |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHYINGCIL |

− | | | + | |Ciliates: Proportion of flagellates in microzooplankton ingestion |

− | + | | | |

− | + | | | |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | | | ||

− | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

|- | |- | ||

− | + | | Base 1 | |

− | + | |WaterQuality | |

− | + | |PHYRATING | |

− | + | |Zooplankton: proportion of phytoplankton in mesozooplankton ingestion | |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PHYTO |

− | | | + | |Phytoplankton: Processes Simulation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PLANK_OC_RAT |

− | | | + | |Oxygen: Oxygen/Carbon ratio in plankton respiration |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PMINNR |

− | | | + | |Phosphorus: DOPnr mineralization rate at reference temperature |

− | | | + | | |

− | | | + | | |

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PMINNRCOEF |

− | | | + | |Phosphorus: DOPnr mineralization temperature coefficient |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PMINR |

− | | | + | |Phosphorus: DOPre mineralization rate at reference tempearture |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PMINRCOEF |

− | | | + | |Phosphorus: DOPre mineralization temperature coefficient |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PPARTMIN |

− | | | + | |Phosphorus: POP decomposition rate at reference temperature |

− | | | + | | |

− | | | + | | |

− | | | + | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |PSATCONS |

− | | | + | |Phytoplankton: Phosphorus half-saturation constant |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |SEMIIMP |

− | | | + | |Semi-implicit Method Calculation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |SIDISSTCOEF |

− | | | + | |Silica: Biogenic silica dissolution temperature coefficient |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |SIKDISS |

− | | | + | |Silica: Biogenic silica dissolution rate in the water column at the reference temperature |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |SILICA |

− | | | + | |Silica: Processes Simulation |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TBCONST1 |

− | | | + | |Bacteria: Constant to control temperature response curve shape |

− | | | + | | |

− | | | + | | |

− | + | | | |

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TBCONST2 |

− | | | + | |Bacteria: Constant to control temperature response curve shape |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TBCONST3 |

− | | | + | |Bacteria: Constant to control temperature response curve shape |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TBCONST4 |

− | | | + | |Bacteria: Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TBMAX |

− | | | + | |Bacteria: Maximum temperature tolerable temperature for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TBMIN |

− | | | + | |Bacteria: Minimum temperature tolerable for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TDENCOEF |

− | | | + | |Nitrogen: Denitrification Temperature Coefficient |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TEMPERATURE_REF |

− | | | + | |Larvae Reference temperature |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TFCONST1 |

− | | | + | |Phytoplankton: Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TFCONST2 |

− | | | + | |Phytoplankton: Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TFCONST3 |

− | | | + | |Phytoplankton: Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TFCONST4 |

− | | | + | |Phytoplankton: Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TFMAX |

− | | | + | |Phytoplankton: Maximum temperature tolerable for growth |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TFMIN |

− | | | + | |Phytoplankton: Minimum temperature tolerable for growth |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TMINNR |

− | | | + | |Nitrogen: DONnr mineralization temperature coefficient |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TMINR |

− | | | + | |Nitrogen: DONr mineralization temperature coefficient |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TNITCOEF |

− | | | + | |Nitrogen: Nitrification temperature coefficient |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TOPTBMAX |

− | | | + | |Bacteria: Maximum temperature of the optimal interval for growth |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | + | |WaterQuality | |

− | + | |TOPTBMIN | |

− | + | |Bacteria: Minimum temperature of the optimal interval for growth | |

− | + | | | |

− | | | ||

− | |||

− | | | ||

− | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TOPTFMAX |

− | | | + | |Phytoplankton: Maximum temperature of the optimal interval for photosyntesis |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

|- | |- | ||

− | + | | Base 1 | |

− | + | |WaterQuality | |

− | + | |TOPTFMIN | |

− | + | |Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis | |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TOPTZMAX |

− | | | + | |Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TOPTZMIN |

− | | | + | |Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TPPARTMINCOEF |

− | | | + | |Phosphorus: POP decomposition temperature coefficient |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TZCONST1 |

− | | | + | |Zooplankton: Constant to control temperature response curve shape |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TZCONST2 |

− | | | + | |Zooplankton: Constant to control temperature response curve shape |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | Base | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TZCONST3 |

+ | |Zooplankton: Constant to control temperature response curve shape | ||

| | | | ||

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− | |||

− | |||

− | |||

− | |||

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− | |||

− | |||

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| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | + | |WaterQuality | |

− | + | |TZCONST4 | |

− | + | |Zooplankton: Constant to control temperature response curve shape | |

− | + | | | |

− | | | ||

− | |||

− | |||

− | |||

− | |||

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− | |||

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|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TZMAX |

− | | | + | |Zooplankton: Maximum temperature tolerable for growth |

− | | | + | | |

− | |||

− | |||

− | |||

− | |||

− | |||

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− | |||

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|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |TZMIN |

− | | | + | |Zooplankton: Minimum temperature tolerable for growth |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

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| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZDISSDON |

− | | | + | |Zooplankton: Dissolved organic fraction in excretions |

+ | | | ||

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− | |||

− | |||

− | |||

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− | |||

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|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZEXCCONS |

+ | |Zooplankton: Excretion constant for zooplankton | ||

| | | | ||

| | | | ||

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− | |||

− | |||

− | |||

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|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZEXCFAC |

− | | | + | |Zooplankton: Excretion Factor |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZINGMAX |

− | | | + | |Zooplankton: Maximun ingestion rate |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZOCILASS |

− | | | + | |Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton |

− | |||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

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− | |||

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− | |||

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− | |||

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| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZOCRATIO |

− | | | + | |Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZOO |

− | | | + | |Zooplankton: Processes Simulation |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZOOEFFCAPCIL |

− | | | + | |Zooplankton: Capture efficiency of microzoolankton |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZOOEFFCAPHY |

− | | | + | |Zooplankton: Capture efficiency of phytoplankton |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

|- | |- | ||

− | + | | Base 1 | |

− | + | |WaterQuality | |

− | + | |ZOOPREYMIN | |

− | + | |Zooplankton: Minimum prey concentration for grazing | |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | |||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | + | |WaterQuality | |

− | + | |ZOPHYASS | |

− | + | |Zooplankton: Assimilation coefficient of flagellates by mesozooplankton | |

− | + | | | |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | | | ||

− | | | ||

− | | | ||

− | | | ||

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− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZPREDMOR |

− | | | + | |Zooplankton: Predatory mortality rate (predation by higher trophic levels) |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZRATIONC |

− | | | + | |Zooplankton: Nitrogen/Carbon Ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZRATIOPC |

− | | | + | |Zooplankton: Phosphorus/Carbon ratio |

+ | | | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZREFRESP |

− | | | + | |Zooplankton: Carbon consumption rate by respiration |

− | | | + | | |

− | | | + | | |

+ | | | ||

+ | | | ||

+ | | | ||

|- | |- | ||

− | | | + | | Base 1 |

− | | | + | |WaterQuality |

− | | | + | |ZSOLEXCR |

− | | | + | |Zooplankton: Soluble inorganic fraction in excretions |

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|} | |} | ||

− | === Module | + | ==MOHID Base 2== |

+ | |||

+ | === Module Atmosphere=== | ||

+ | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDBase2/ModuleAtmosphere.F90 Source Code] | ||

{| class="wikitable" | {| class="wikitable" | ||

− | |||

|- | |- | ||

! scope="col" |Project | ! scope="col" |Project | ||

Line 4,542: | Line 4,350: | ||

! scope="col" |Options | ! scope="col" |Options | ||

! scope="col" |Option description | ! scope="col" |Option description | ||

+ | ! scope="col" |Default Value | ||

+ | ! scope="col" |Units | ||

+ | ! scope="col" |Type | ||

|- | |- | ||

− | | | + | | Base 2 |

− | | | + | |Atmosphere |

− | | | + | |BOX_TIME_SERIE |

− | | | + | |Output of property values in time series files, integrated in boxes. |

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 2 |

− | | | + | |Atmosphere |

− | | | + | |DATA_COLUMN |

− | | | + | |Number of column in the time series file. |

+ | | | ||

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 2 |

− | | | + | |Atmosphere |

− | | | + | |FILENAME |

− | | | + | |Path to the file with the time series. |

| | | | ||

| | | | ||

− | |||

− | |||

− | |||

− | |||

| | | | ||

| | | | ||

| | | | ||

|- | |- | ||

− | | | + | | Base 2 |

− | | | + | |Atmosphere |

− | | | + | |IRRIGATION |

+ | |Property added by irrigation | ||

+ | | | ||

+ | | | ||

| | | | ||

| | | | ||

| | | | ||

| |