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Line 11: Line 11:
 
| Base 1
 
| Base 1
 
|Benthos
 
|Benthos
|PELAGIC_MODEL
+
|BIOSI_DECAY_RATE
|Pelagic model name to which ModuleBenthos will be coupled
+
|Biogenic silica dissolution rate
|WaterQuality
+
|
 
|
 
|
 
|-
 
|-
 
| Base 1
 
| Base 1
 
|Benthos
 
|Benthos
|PELAGIC_MODEL
+
|DIATOMS
|Pelagic model name to which ModuleBenthos will be coupled
+
|Compute diatoms mortality
|LifeModel
+
|
 
|
 
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|ADVECTION_SCHEME
+
|DIATOMS_MORTALITY
|Numerical Discretization of Advection.
+
|Diatoms mortality rate when deposited
|5
+
|
|CentralDif (Central differences scheme)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|ADVECTION_SCHEME
+
|DIATOMS_NC_RATIO
|Numerical Discretization of Advection.
+
|Diatoms Nitrogen/Carbon ratio
|1
+
|
|UpwindOrder1 (Upwind scheme of 1st order)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|DIFFUSION_SCHEME
+
|DIATOMS_PC_RATIO
|Numerical Discretization of Difusion.
+
|Diatoms Phosphorus/Carbon ratio
|5
+
|
|CentralDif (Central Differences discretization)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|DOWNSTREAM_BOUNDARY
+
|DIATOMS_SIC_RATIO
|Choose downstream boundary condition
+
|Diatoms Silica/Carbon ratio
|2
+
|
|ImposedWaterDepth
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|DOWNSTREAM_BOUNDARY
+
|DT
|Choose downstream boundary condition
+
|Time step to compute benthic biogeochemical processes
|1
+
|
|Normal (solves KynematicWave at the outlet)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|DOWNSTREAM_BOUNDARY
+
|MIN_OXYGEN
|Choose downstream boundary condition
+
|Minimum oxygen concentration for mineralization to occur
|0
+
|
|Dam (flow at the outlet = 0.0)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|FILE_IN_TIME
+
|NC_RATIO
|Downstream boundary condition evolution
+
|Nitrogen/Carbon ratio of organic matter
|NONE
+
|
|Constant evolution of downstream boundary condition (constant water depth)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|FILE_IN_TIME
+
|NITROGEN
|Downstream boundary condition evolution
+
|Compute nitrogen processes
|TIMESERIE
+
|
|Reads a time serie with water depth for downstream boundary condition
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|HYDRODYNAMIC_APROX
+
|OXYGEN
|Chooses the hydrodynamic approximation to be solved in the momentum equation
+
|Compute oxygen processes
|2
+
|
|DiffusionWave (full St Venant equation except for advection)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|HYDRODYNAMIC_APROX
+
|PC_RATIO
|Chooses the hydrodynamic approximation to be solved in the momentum equation
+
|Phosphorus/Carbon ratio of organic matter
|3
+
|
|DynamicWave (full St Venant equation)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|HYDRODYNAMIC_APROX
+
|PELAGIC_MODEL
|Chooses the hydrodynamic approximation to be solved in the momentum equation
+
|Pelagic model name to which ModuleBenthos will be coupled
|1
+
|WaterQuality
|KinematicWave (friction = slope gradient)
+
|
 
|-
 
|-
 
| Base 1
 
| Base 1
|DrainageNetwork
+
|Benthos
|INITIALIZATION_METHOD
+
|PELAGIC_MODEL
|Choose initialization method for this property.
+
|Pelagic model name to which ModuleBenthos will be coupled
|CONSTANT
+
|LifeModel
|Constant initialization of property
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Atmosphere
+
|Benthos
|RADIATION_METHOD
+
|PHOSPHORUS
|Method to compute solar radiation
+
|Compute phosphorus processes
|1
+
|
|Climatologic solar radiation algorithm
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Atmosphere
+
|Benthos
|RADIATION_METHOD
+
|PHYTO
|Method to compute solar radiation
+
|Compute phytoplankton mortality
|2
+
|
|CEQUALW2 solar radiation algorithm
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|FILE_IN_TIME
+
|PHYTO_MORTALITY
|Defines the kind of reading operation performed in time to modify the field
+
|Phytoplankton 
|PROFILE_TIME_SERIE
+
mortality rate when deposited
|Read solution from various profiles in time
+
|
 +
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|FILE_IN_TIME
+
|PHYTO_NC_RATIO
|Defines the kind of reading operation performed in time to modify the field
+
|Phytoplankton Nitrogen/Carbon ratio
|TIMESERIE
+
|
|The data is given at a certain location with a time serie. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the timeserie file must be indicated in DATA_COLUMN.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|FILE_IN_TIME
+
|PHYTO_PC_RATIO
|Defines the kind of reading operation performed in time to modify the field
+
|Phytoplankton Nitrogen/Carbon ratio
|NONE
+
|
|Matrix is not modified from reading values from file
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|FILE_IN_TIME
+
|PON_DECAY_RATE
|Defines the kind of reading operation performed in time to modify the field
+
|Particulate organic nitrogen mineralization rate
|HDF
+
|
|Reads data from an HDF5 file. There are restrictions regarding file format:
+
|
1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid.
 
2) In the Grid folder it is required to have the data sets: "Bathimetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints".
 
3) The name of the fields must be recognised by Mohid (see list of supported names)
 
4) Time data set must contain as many instants as the field data sets
 
5) Time data set must also contain dates for a period of the same or greater duration of the simulation.
 
 
 
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|INITIALIZATION_METHOD
+
|PON_DECAY_TFACTOR
|Initial condition data input method.
+
|Particulate Organic Nitrogen temperature influence factor in mineralization Rate
|PROFILE_TIMESERIE
+
|
|Read initial field from various profiles.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|INITIALIZATION_METHOD
+
|POP_DECAY_RATE
|Initial condition data input method.
+
|Particulate organic phosphorus mineralization rate
|BOXES
+
|
|Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|INITIALIZATION_METHOD
+
|POP_DECAY_TFACTOR
|Initial condition data input method.
+
|Particulate Organic Phosphorus temperature influence factor in mineralization Rate
|LAYERS
+
|
|Initialization by horizontal layers. alues are specified with LAYERS_VALUES keyword.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Benthos
|INITIALIZATION_METHOD
+
|SILICA
|Initial condition data input method.
+
|
|TIMESERIE
+
|
|Reads initial values from a time serie file. If necessary the initial value is interpolated in time.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|CEQUALW2
|INITIALIZATION_METHOD
+
|DTSECONDS
|Initial condition data input method.
+
|time step, in seconds, between two CEQUALW2 calls
|CONSTANT
+
|
|Constant value for all domain.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|CEQUALW2
|INITIALIZATION_METHOD
+
|NAME
|Initial condition data input method.
+
|Algae Property name as defined on Module GlobalData
|HDF
+
|
|Reads initial field from a HDF file. Field is interpolated in time if necessary.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Discharges
|INITIALIZATION_METHOD
+
|ALTERNATIVE_LOCATIONS
|Initial condition data input method.
+
|Activates the automatic search for alternative locations, when the discharge point is not a covered point
|PROFILE
+
|
|Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Discharges
|INITIALIZATION_METHOD
+
|CREST_HEIGTH
|Initial condition data input method.  
+
|Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
|ANALYTIC PROFILE
+
|
|Initialization made by an analitical vertical profile.
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Discharges
|INITIALIZATION_METHOD
+
|DATA_BASE_FILE
|Initial condition data input method.
+
|Definition of the data base timeserie file. If there is one, model assumes that the discharge is time variable
|ASCII_FILE
+
|
|Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.
+
|
If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.
 
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Discharges
|PROFILE_TYPE
+
|DEFAULT_FLOW_VALUE
|Type of analitical profile
+
|Default flow value
|LINEAR
+
|
|Profile has a linear format, given by the following expression:
+
|
Value = DefaultValue + CoefA * CellDepth / CoefB
 
 
|-
 
|-
| Base 2
+
| Base 1
|FillMatrix
+
|Discharges
|PROFILE_TYPE
+
|DEFAULT_VELOCITY_VALUE
|Type of analitical profile
+
|Default velocity associated with the discharge. Important to compute momentum fluxes
|EXPONENTIAL
+
|
|Profile has an exponential format, given by the following expression:
+
|
Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
 
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|FACES_OPTION
+
|DEFAULTVALUE
|Methodology to compute areas between cells
+
|Water property value
|3
+
|
|Minimum thickness of the adjacent water columns (advanced user option)
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|FACES_OPTION
+
|DESCRIPTION
|Methodology to compute areas between cells
+
|Discharge description
|2
+
|
|Average thickness of the adjacent water columns (advised option)
+
|
 +
|-
 +
| Base 1
 +
|Discharges
 +
|FLOW_COLUMN
 +
|Column where the flow is defined in the data base timeserie file
 +
|
 +
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|INITIALIZATION_METHOD
+
|FLOW_OVER
|Type of initialization used in the case of a lagrangian coordinate. This is also the reference coordinate in relation to which the lagrangian coordinate suffers distortion function of the vertical velocity
+
|Computes a negative discharge, function of the water level, also known as spill flow
|CARTESIAN
+
|
|Cartesian type coordinates
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|INITIALIZATION_METHOD
+
|I_CELL
|Type of initialization used in the case of a lagrangian coordinate. This is also the reference coordinate in relation to which the lagrangian coordinate suffers distortion function of the vertical velocity
+
|Line where the discharge is located. When defined, a grid-based discharged is assumed
|SIGMA
+
|
|Sigma type coordinates
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|J_CELL
|Type of vertical coordinate of the domain
+
|Column where the discharge is located
|CARTESIANTOP
+
|
|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|K_CELL
|Type of vertical coordinate of the domain
+
|Layer where the discharge is located
|LAGRANGIAN
+
|
|Lagrangian coordinates - moves the upper and
+
|
lower faces with the vertical flow velocity.
+
|-
 +
| Base 1
 +
|Discharges
 +
|NAME
 +
|Discharge name
 +
|
 +
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|NODE_ID
|Type of vertical coordinate of the domain
+
|ID of the discharge, when it isn't grid-based
|FIXSEDIMENT
+
|
|Fixed Sediment coordinates
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|TIME_SERIE_COLUMN
|Type of vertical coordinate of the domain
+
|This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the timeserie.
|FIXSPACING
+
|
|Fixed Spacing coordinates - used to study flows close to the bottom
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|U_COLUMN
|Type of vertical coordinate of the domain
+
|This keyword is used to give to model the column where the velocity X is defined in the data base timeserie file
|SIGMA
+
|
|Sigma coordinates
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|V_COLUMN
|Type of vertical coordinate of the domain
+
|This keyword is used to give to model the column where the velocity Y is defined in the data base timeserie file
|SIGMATOP
+
|
|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|WEIR_COEF
|Type of vertical coordinate of the domain
+
|Weir Coeficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
|HARMONIC
+
|
|Harmonic coordinates - the horizontal faces close to the surface
+
|
expand and collapse depending on the variation of the surface elevation. This
 
coordinate was implemented in the geometry module to simulate reservoirs.
 
 
|-
 
|-
| Base 2
+
| Base 1
|Geometry
+
|Discharges
|TYPE
+
|WEIR_LENGTH
|Type of vertical coordinate of the domain
+
|Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow).
|CARTESIAN
+
|
|Cartesian coordinates
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|KERNEL_TYPE
+
|ADVECTION_DIFUSION
|Type of kernel used in the convolution interpolations
+
|Compute advection and difusion of property
|Exponential
 
 
|
 
|
|-
 
| Base 2
 
|Interpolation
 
|KERNEL_TYPE
 
|Type of kernel used in the convolution interpolations
 
|Gaussian
 
 
|
 
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|METHODOLOGY
+
|ADVECTION_SCHEME
|The methodology used in the interpolation process
+
|Numerical Discretization of Advection.
 +
|5
 +
|CentralDif (Central differences scheme)
 +
|-
 +
| Base 1
 +
|DrainageNetwork
 +
|ADVECTION_SCHEME
 +
|Numerical Discretization of Advection.
 
|1
 
|1
|Conservative convolution
+
|UpwindOrder1 (Upwind scheme of 1st order)
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|METHODOLOGY
+
|CHECK_NODES
|The methodology used in the interpolation process
+
|Check nodes consistency in the drainage network file
|2
+
|
|NonConservative convolution
+
|
 
 
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|METHODOLOGY
+
|CHECK_REACHES
|The methodology used in the interpolation process
+
|Check reaches consistency in the drainage network file (a reach connects 2 nodes)
|4
+
|
|Bilinear
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|METHODOLOGY
+
|CONTINUOUS
|The methodology used in the interpolation process
+
|Computations follow from another simulation
|5
+
|
|Spline 2D
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|METHODOLOGY
+
|DATA_COLUMN
|The methodology used in the interpolation process
+
|Number of column in the time serie file with the downstream water depth values
|6
+
|
|Inverse weight
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|METHODOLOGY
+
|DEFAULT_VALUE
|The methodology used in the interpolation process
+
|Default value for water depth at the downstream boundary condition
|3
+
|
|Triangulation
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|NC_TYPE
+
|DEFAULT_VALUE
|Cheks what class of NonConservative convolution process to use
+
|Default value for this property. Also used as initial value.
|2
+
|
|Smoothes the field using the PHI value
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|NC_TYPE
+
|DESCRIPTION
|Cheks what class of NonConservative convolution process to use
+
|Description of property
|3
+
|
|Data
+
|
 
|-
 
|-
| Base 2
+
| Base 1
|Interpolation
+
|DrainageNetwork
|NC_TYPE
+
|DIFFUSION_SCHEME
|Cheks what class of NonConservative convolution process to use
+
|Numerical Discretization of Difusion.
|1
+
|5
|User defined kernel for the NonConservative convolution
+
|CentralDif (Central Differences discretization)
 
|-
 
|-
| Land
+
| Base 1
|Runoff
+
|DrainageNetwork
|ROUTING
+
|DIFFUSIVITY
|The overland flow routing method. Possible values:
+
|Diffusivity of property
1 - Manning
+
|
2 - Chezy
+
|
 
 
|2
 
|Chezy Equation
 
 
|-
 
|-
| Land
+
| Base 1
|Runoff
+
|DrainageNetwork
|ROUTING
+
|DISCHARGES
|The overland flow routing method. Possible values:
+
|Has water discharges into the drainage network
1 - Manning
+
|
2 - Chezy
+
|
 
 
|1
 
|Manning Equation
 
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|DIMENSION
+
|DISCHARGES
|Number of dimensions of the assimilation field
+
|Check if property has discharges.
|3
+
|
|Three-Dimensional property
+
|
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|DIMENSION
+
|DOWNSTREAM_BOUNDARY
|Number of dimensions of the assimilation field
+
|Choose downstream boundary condition
 
|2
 
|2
|Two-Dimensional property
+
|ImposedWaterDepth
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|TYPE_ZUV
+
|DOWNSTREAM_BOUNDARY
|Reference of the field to the grid.
+
|Choose downstream boundary condition
|U
+
|1
|Variable is referenced to the XX faces of the control volume
+
|Normal (solves KynematicWave at the outlet)
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|TYPE_ZUV
+
|DOWNSTREAM_BOUNDARY
|Reference of the field to the grid.
+
|Choose downstream boundary condition
|Z
+
|0
|Variable is defined in the center of the control volume
+
|Dam (flow at the outlet = 0.0)
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|TYPE_ZUV
+
|FILE_IN_TIME
|Reference of the field to the grid.
+
|Downstream boundary condition evolution
|V
+
|NONE
|Variable is referenced to the YY faces of the control volume
+
|Constant evolution of downstream boundary condition (constant water depth)
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|TYPE_ZUV
+
|FILE_IN_TIME
|Reference of the field to the grid.
+
|Downstream boundary condition evolution
|V
+
|TIMESERIE
|Variable is referenced to the YY faces of the control volume
+
|Reads a time serie with water depth for downstream boundary condition
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|TYPE_ZUV
+
|FILENAME
|Reference of the field to the grid.
+
|Path to the file with the downstream water depth time serie values
|U
+
|
|Variable is referenced to the XX faces of the control volume
+
|
 
|-
 
|-
| Water
+
| Base 1
|Assimilation
+
|DrainageNetwork
|TYPE_ZUV
+
|GLOBAL_MANNING
|Reference of the field to the grid.
+
|Assigns a Manning rugosity coeficient to all the drainage network channels
|Z
+
|
|Variable is defined in the center of the control volume
+
|
 
 
 
 
 
|-
 
|-
| Water
+
| Base 1
|FreeVerticalMovement
+
|DrainageNetwork
|FREEVERT_IMPEXP_ADV
+
|HYDRODYNAMIC_APROX
|Coeficient to compute vertical movement through implicit or explicit methods
+
|Chooses the hydrodynamic approximation to be solved in the momentum equation
|1.0
+
|2
|Explicit
+
|DiffusionWave (full St Venant equation except for advection)
 
|-
 
|-
| Water
+
| Base 1
|FreeVerticalMovement
+
|DrainageNetwork
|FREEVERT_IMPEXP_ADV
+
|HYDRODYNAMIC_APROX
|Coeficient to compute vertical movement through implicit or explicit methods
+
|Chooses the hydrodynamic approximation to be solved in the momentum equation
|0.0
+
|3
|Implicit
+
|DynamicWave (full St Venant equation)
 
|-
 
|-
| Water
+
| Base 1
|FreeVerticalMovement
+
|DrainageNetwork
|WS_TYPE
+
|HYDRODYNAMIC_APROX
|Method to compute settling velocity
+
|Chooses the hydrodynamic approximation to be solved in the momentum equation
 
|1
 
|1
|Prescribe a constant settling velocity for particulate property
+
|KinematicWave (friction = slope gradient)
 
|-
 
|-
| Water
+
| Base 1
|FreeVerticalMovement
+
|DrainageNetwork
|WS_TYPE
+
|INITIAL_WATER_DEPTH
|Method to compute settling velocity
+
|Assigns an initial water depth to all channels. only if continuous computation is not choosed.
|2
+
|
|Compute settling velocity as function of cohesive sediment concentration
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|BAROCLINIC_RADIATION
+
|INITIALIZATION_METHOD
|Check if the user wants to radiate internal tides
+
|Choose initialization method for this property.
|0
+
|CONSTANT
|No radiation
+
|Constant initialization of property
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|BAROCLINIC_RADIATION
+
|MIN_VALUE
|Check if the user wants to radiate internal tides
+
|Minimum concentration of property.
|2
+
|
|Vertical
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|BAROCLINIC_RADIATION
+
|MIN_WATER_DEPTH
|Check if the user wants to radiate internal tides
+
|Minimum water column for computations
|1
+
|
|Horizontal
+
|
 +
|-
 +
| Base 1
 +
|DrainageNetwork
 +
|NAME
 +
|Name of property
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|CYCLIC_DIRECTION
+
|NETWORK_FILE
|Check along which direction the user wants to impose a CYCLIC boundary condition
+
|Path to the file that describes nodes and reaches
|DirectionY_
+
|
|Direction Y
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|CYCLIC_DIRECTION
+
|TIME_SERIE
|Check along which direction the user wants to impose a CYCLIC boundary condition
+
|Output of property values in time series files.
|DirectionX_
+
|
|Direction x
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|CYCLIC_DIRECTION
+
|TIME_SERIE_LOCATION
|Check along which direction the user wants to impose a CYCLIC boundary condition
+
|Path to the file that has the time series location characteristics
|DirectionXY_
+
|
|Directions X and Y
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|DrainageNetwork
|DISCRETIZATION
+
|UNITS
|Check what type of implicit discretization in time is choose for the global equations
+
|Units of property
|1
+
|
|Abbott Scheme - 4 equations per iteration
+
|
 +
|-
 +
| Base 1
 +
|DrainageNetwork
 +
|XS_CALC
 +
|Method to compute trapezoidal cross section (1 - Analitic; 2 - Discretization dH)
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|DISCRETIZATION
+
|AFFINITY_NH4
|Check what type of implicit discretization in time is choose for the global equations
+
|Affinity for NH4 uptake
|2
+
|
|Leendertse Scheme - 6 equations per iteration
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|EVOLUTION
+
|AFFINITY_NO3
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
+
|Affinity for NO3 uptake
|Residual_hydrodynamic
+
|
|Residual hydrodynamic
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|EVOLUTION
+
|AFFINITY_PO4
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
+
|Affinity for PO4 uptake
|No_hydrodynamic
+
|
|No hydrodynamic
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|EVOLUTION
+
|ALPHA_CHL
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
+
|Chl specific initial slop of P vs I curve
|Read_File
+
|
|Read file
+
|
 +
|-
 +
| Base 1
 +
|Life
 +
|ASS_EFFIC
 +
|Asimilation efficiency
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|EVOLUTION
+
|ASS_EFFIC_LOW_O2
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
+
|Asimilation efficiency @ low O2
|Solve_Equations
+
|
|Solve equations
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|EVOLUTION
+
|ASSIMIL_EFFIC
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
+
|Assimilation efficiency
|Vertical1D
+
|
|1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|IMPLICIT_VERTADVECTION
+
|BIO_SI_DISS
|Check if the vertical advection is implicit
+
|Biogenic silica dissolution rate
|0.0
+
|
|Explicit
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|IMPLICIT_VERTADVECTION
+
|CHL_DEGRAD_RATE
|Check if the vertical advection is implicit
+
|Chla degradation rate constant
|0.5
+
|
|Hybrid for option in (0.0, 1.0)
+
|
 +
|-
 +
| Base 1
 +
|Life
 +
|DENS_DEP_MORT
 +
|Density-dependence mortality rate
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|IMPLICIT_VERTADVECTION
+
|DOM_UP_KS
|Check if the vertical advection is implicit
+
|Half saturation value for DOM uptake   
|1.0
+
 
|Implicit
+
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|IMPLICIT_VERTDIFFUSION
+
|DOMSL_BAC_KS
|Check if the vertical advection is implicit
+
|Bacteria mediated DOMsl Hydrolysis
|1.0
+
|
|Implicit
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|IMPLICIT_VERTDIFFUSION
+
|DOMSL_BAC_VMAX
|Check if the vertical advection is implicit
+
|Vmax for DOMsl Hydrolysis
|0.5
+
|
|Hybrid for option in (0.0, 1.0)
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|IMPLICIT_VERTDIFFUSION
+
|EXC_DOM_SL_FRAC
|Check if the vertical advection is implicit
+
|DOM diverted to semi-labile pool
|0.0
+
|
|Explicit
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|EXCRE_UP_FRAC
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Excreted fraction of uptake
|4
+
|
|Gauge
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|EXU_NUT_STRESS
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Exudation under nutrient stress
|1
+
|
|No local solution
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|GRAZ_AVAIL
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Availability of Prey X
|2
+
|
|Submodel
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|GRAZ_UP_KS
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Half saturation value for uptake
|5
+
|
|AssimilaPlusSubModel
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|LIGHT_LIM_METHOD
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Light limitation method
|7
+
|
|AssimilaGaugeSubModel
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|LYS_REF_CON
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Lysis_Ref_Con   
|6
+
|
|GaugePlusSubModel
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|LOCAL_SOLUTION
+
|MASS_XEK
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
+
|Command to make a mass conservation test
|3
+
|
|AssimilationField
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|RADIATION
+
|MAX_ASSIMIL
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
+
|Maximal assimilation rate
|0
+
|
|No Radiation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|RADIATION
+
|MAX_CHLN_RATIO
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
+
|Maximal Chl:N ratio
|1
+
|
|FlatherWindWave_
+
|
 +
|-
 +
| Base 1
 +
|Life
 +
|MAX_NC_RATIO
 +
|Maximal N:C ratio
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|RADIATION
+
|MAX_PC_RATIO
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
+
|Maximal P:C ratio
|3
+
|
|BlumbergKantha_
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|RADIATION
+
|MAX_SPEC_UP_@10C
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
+
|Maximum specific uptake @ 10ºC
|2
+
|
|FlatherLocalSolution_
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|UP_CENTER
+
|MAX_STORE_FILL
|Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme
+
|Maximal rate of storage filling
 
+
|
|0.0
+
|
|Centred differences
 
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|UP_CENTER
+
|MIN_LYSIS
|Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme
+
|Minimal lysis rate
 
+
|
|0.5
+
|
|Hybrid for option in (0,1)
+
|-
 +
| Base 1
 +
|Life
 +
|MIN_NC_RATIO
 +
|Minimal N:C ratio
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|UP_CENTER
+
|MIN_PC_RATIO
|Check if the horizontal advection discretization is upstream or center differences. By default advection is computed using a Upstream scheme
+
|Minimal P:C ratio
 
+
|
|1.0
+
|
|Upstream
 
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|VELNORMALBOUNDARY
+
|MIXOTROPHY
|Checks the velocities the user want to impose in the exterior faces
+
|Hability to performe mixotrophy
|2
+
|
|null gradient
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|VELNORMALBOUNDARY
+
|MORT_DOM_SL_FRAC
|Checks the velocities the user want to impose in the exterior faces
+
|DOC_SL_Frac 
|1
+
|
|null value
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|VELTANGENTIALBOUNDARY
+
|MORT_O2_DEP
|Checks the velocities the user want to impose between two boundary points
+
|Oxygen-dependent mortality rate
|1
+
|
|null value
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|VELTANGENTIALBOUNDARY
+
|MORT_POM_FRAC
|Checks the velocities the user want to impose between two boundary points
+
|Fraction of mortality to POM
|2
+
|
|null gradient
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|WIND
+
|MORT_RATE
|Checks if the user want to consider the effect of the wind stress. By default the wind stress is not compute
+
|Temperature-independent mortality rate
|1
+
|
|wind forcing
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|WIND
+
|NH4_Ks
|Checks if the user want to consider the effect of the wind stress. By default the wind stress is not compute
+
|PO4 uptake affinity   
|2
+
|
|wind forcing with a smooth start
+
|
 
|-
 
|-
| Water
+
| Base 1
|Hydrodynamic
+
|Life
|WIND
+
|NIT_IN_COEF
|Checks if the user want to consider the effect of the wind stress. By default the wind stress is not compute
+
|Nitrification inhibition coeficient
|0
+
|
|No wind forcing
+
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|BAT_INTEGRATION_TYPE
+
|NIT_O_N_CONV
|It is posible to calculate the new bathymetry (spacial integration) using two different options
+
|Nitrification O:N consumption ratio
|MaxVal_Type
+
|
|Each new integrated cell has the maximum value of the cells used to do the integration of that cell
+
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|BAT_INTEGRATION_TYPE
+
|NITRIFRADLIM
|It is posible to calculate the new bathymetry (spacial integration) using two different options
+
|Light radiation bellow which nitrification occurs
|MeanVal_Type
+
|
|The depth of the integrated cell is obtained by the average of the cells used to do the integration of that cell.
+
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|IN_FILE_TYPE
+
|NITRIFRATE
|Input File Type
+
|Nitrification rate
|BeginEnd_type
+
|
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|IN_FILE_TYPE
+
|NO3_Ks
|Input File Type
+
|NO3 uptake affinity
|M2_Tide_type
+
|
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|IN_FILE_VERSION
+
|NUT_STRESS_TRESHOLD
|Input File Version
+
|Nutrient stress threshold (sedimentation)
|2
+
|
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|IN_FILE_VERSION
+
|O2_CARB_CONVERS
|Input File Version
+
|Oxygen to carbon conversion factor
|1
+
|
|Only available if LOAD_TO_MEMORY = 0
+
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|OUT_FILE_VERSION
+
|O2_KS
|Controls the version of the output file
+
|Oxygen half saturation constant
|2
+
|
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|HydrodynamicFile
+
|Life
|OUT_FILE_VERSION
+
|O2_LOW_ASS_EFIC
|Controls the version of the output file
+
|Oxygen concentration bollow which ass efic is low
|1
+
|
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|Jet
+
|Life
|LOCAL_TYPE
+
|PHOTOINHIBITION
|Methodology to define the ambient variables
+
|Photoinhibition
|UNIFORM
+
|
|Uniform water colum
+
|
 
|-
 
|-
| Water
+
| Base 1
|Jet
+
|Life
|LOCAL_TYPE
+
|PO4_Ks
|Methodology to define the ambient variables
+
|PO4 uptake affinity
|FIELD3D
+
|
|3D field generated by the MOHID system
+
|
 
|-
 
|-
| Water
+
| Base 1
|Jet
+
|Life
|LOCAL_TYPE
+
|POM_BAC_KS
|Methodology to define the ambient variables
+
|Bacteria mediated POM Hydrolysis MM cosntant
|LINEAR
+
|
|Water column where the density and velocity have a linear profile
+
|
 
|-
 
|-
| Water
+
| Base 1
|Jet
+
|Life
|PARAMETERIZATION
+
|POM_BAC_VMAX
|Parametrization used to simulate the entrainmenet process
+
|Vmax for POM Hydrolysis
|CORJET
+
|
|Parameterization based on CORJET model
+
|
 
|-
 
|-
| Water
+
| Base 1
|Jet
+
|Life
|PARAMETERIZATION
+
|Q10_VALUE
|Parametrization used to simulate the entrainmenet process
+
|Q10 value for temperature limitation
|JETLAG
+
|
|Parameterization based on JETLAG model
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|ACCIDENT_METHOD
+
|REDFIELD_NC
|The how to distribute initially the particles if the emission type is accident
+
|Redfield N:C ratio
|2
+
|
|The "Thickness" option
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|ACCIDENT_METHOD
+
|REDFIELD_PC
|The how to distribute initially the particles if the emission type is accident
+
|Redfield P:C ratio
|1
+
 
|The "Fay" option
+
|
 +
|
 +
|-
 +
| Base 1
 +
|Life
 +
|REDFIELD_SiC
 +
|Standard Si:C ratio
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|DENSITY_METHOD
+
|REF_TEMP
|Way to calculate particle density
+
|Reference temperature
 
+
|
|3
+
|
|Constant
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|DENSITY_METHOD
+
|REF_TEMP_Q10
|Way to calculate particle density
+
|Reference temperature for Q10 method
 
+
|
|1
+
|
|Leendertse
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|DENSITY_METHOD
+
|REL_EXCESS_SI
|Way to calculate particle density
+
|Release rate of excess silicate
 
+
|
|2
+
|
|UNESCO
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|EMISSION_SPATIAL
+
|RESP_BASAL
|The type of spatial emission.
+
|Basal respiration rate
 
+
|
|Point
+
|
|Emission at a single point
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|EMISSION_SPATIAL
+
|RESP_FRAC_PROD
|The type of spatial emission.
+
|Respired fraction of production
 
+
|
|Accident
+
|
|Emission as accident
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|EMISSION_SPATIAL
+
|REST_RESP_@10C
|The type of spatial emission.
+
|Rest respiration @ 10ºC
 
+
|
|Box
+
|
|Emission from a Box
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|EMISSION_TEMPORAL
+
|SED_MIN
|The type of temporal emission
+
|Minimal sedimentation rate
 
+
|
|Continuous
+
|
|Continuous emission
 
 
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|EMISSION_TEMPORAL
+
|SED_NUT_STRESS
|The type of temporal emission
+
|Nutrient stress sedimentation rate
 
+
|
|Instantaneous
+
|
|Instantaneous emission
+
|-
 
+
| Base 1
 +
|Life
 +
|SEDIM_MIN
 +
|Minimal sedimentation rate
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|MOVEMENT
+
|SEDIM_NUT_STRESS
|The type of particle aleatory horizontal movement
+
|Nutrient stress threshold (sedimentation)
|NotRandom
+
|
|Do not consider any aleatory horizontal component
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|MOVEMENT
+
|SI_UPTAKE_KS
|The type of particle aleatory horizontal movement
+
|Silicate uptake Michaelis constant
|SullivanAllen
+
|
|Parameterization based on Sullivan Allen formulation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|MOVING_ORIGIN_UNITS
+
|SILICA_USE
|The Units in which the moving origin position is given
+
|Set Silica use by the producer
|Meters
+
|
|The units are meters
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|MOVING_ORIGIN_UNITS
+
|TEMP_LIM_METHOD
|The Units in which the moving origin position is given
+
|Temperature limitation method
|Cells
+
|
|The units are given as cells
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|Life
|OUTPUT_CONC
+
|tHDDc
|Output Integration Type
+
|7bVtoM http://www.FyLitCl7Pf7kjQdDUOLQOuaxTXbj5iNG.com
1 - Maximum
+
|
2 - Average
+
|
|2
 
|Uses average values for integration
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|OUTPUT_CONC
+
|BEACHED_MORT_RATE
|Output Integration Type
+
|Beached drifting macroalgae mortality rate
1 - Maximum
+
|
2 - Average
+
|
|1
 
|Uses maximum values for integration
 
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|SEDIMENTATION
+
|DEPLIM
|Sedimentation type.
+
|Maximum SPM deposition flux allowed for macroalgae to grow
|Imposed
 
 
|
 
|
|-
 
| Water
 
|Lagrangian
 
|SEDIMENTATION
 
|Sedimentation type.
 
|Stokes
 
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|T90_VAR_METHOD_1
+
|DISSDON
|Method to compute T90 function.
+
|fraction of dissolved organic material excreted by macroalgae
|1
+
|
|Fecal decay according to Canteras et al. (1995)
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|T90_VAR_METHOD_1
+
|DT
|Method to compute T90 function.
+
|Time step compute macroalgae biogeochemical processes
|2
+
|
|Fecal decay according to Chapra (1997)
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|TURB_V
+
|ENDREPC
|Vertical turbulence parameterization
+
|Macroalgae endogenous respiration rate
|Profile
+
|
|Parameterization based on the velocity profile
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|TURB_V
+
|EROCRITSS
|Vertical turbulence parameterization
+
|Critical shear stress for macroalgae dettachment to occur
|Constant
+
|
|Constant Parameterization
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|VOLUME_INCREASE
+
|EXCRCONS
|The way volume increase is calculated
+
|Macroalgae excretion rate
|Velocity
+
|
|The doublication occour after the time given by TVOL200, but also depends on the local velocity
+
|
 
|-
 
|-
| Water
+
| Base 1
|Lagrangian
+
|MacroAlgae
|VOLUME_INCREASE
+
|GRAZCONS
|The way volume increase is calculated
+
|Grazing rate over macroalgae
|Double
+
|
|The doublication occour after the time given by TVOL200
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|DISPERSIONMETHOD
+
|GROWMAX
|Method for Dispersion
+
|macroalgae maximum growth rate
|Delvigne
+
|
|Dispersion parameterized with Delvigne formulation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|DISPERSIONMETHOD
+
|MACROALGAE_MINCONC
|Method for Dispersion
+
|Minimum residual value for macroalgae abundance
|Mackay
+
|
|Dispersion parameterized with Mackay formulation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|EMULSIFICATIONMETHOD
+
|MIN_OXYGEN
|Method for Emulsification
+
|Minimum oxygen concentration for macroalgae growth
|Mackay
+
|
|Emulsification parameterized following Mackay formulation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|EMULSIFICATIONMETHOD
+
|MORTCON
|Method for Emulsification
+
|Macroalgae mortality half saturation constant
|Rasmussen
+
|
|Emulsification parameterized following Rasmussen formulation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|EVAPORATIONMETHOD
+
|MORTMAX
|Method for Evaporation
+
|Macroalgae natural mortality rate
|EvaporativeExposure
+
|
|Evaporation computed with evaporative exposure method
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|EVAPORATIONMETHOD
+
|NITROGEN
|Method for Evaporation
+
|Defines if the user wishes to compute the nitrogen cycle
|PseudoComponents
+
|
|Evaporation computed with pseudocomponents method
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|EVAPORATIONMETHOD
+
|NSATCONS
|Method for Evaporation
+
|nitrogen half-saturation constant for macroalgae
|Fingas
+
|
|Evaporation computed with Fingas formulations
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|FINGAS_EVAP_EQTYPE
+
|PELAGIC_MODEL
|Evaporation Equation Type
+
|Pelagic biogeochemical module coupled
|SquareRoot
+
|
|Square Root Equation Type for Evaporation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|FINGAS_EVAP_EQTYPE
+
|PHOSPHORUS
|Evaporation Equation Type
+
|Defines if the user wishes to compute the phosphorus cycle
|Logarithmic
+
|
|Logarithmic Equation Type for Evaporation
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|OILTYPE
+
|PHOTOIN
|Oil Type
+
|macroalgae optimum radiation value
|Crude
+
|
|Crude Oil
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|OILTYPE
+
|PHOTORES
|Oil Type
+
|Macroalgae photorespiration rate
|Refined
+
|
|Refined oil
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|SPREADINGMETHOD
+
|PSATCONS
|Method for Spreading
+
|phosphorus half-saturation constant for macroalgae
|Fay
+
|
|Mechanical spreading simply based on Fay theory
+
|
 
|-
 
|-
| Water
+
| Base 1
|Oil
+
|MacroAlgae
|SPREADINGMETHOD
+
|RATIONC
|Method for Spreading
+
|Macroalgae nitrogen/carbon ratio
|ThicknessGradient
+
|
|Oil mechanical spreading based on thickness gradients, parameterized with fay theory
+
|
 
|-
 
|-
| Water
+
| Base 1
|SedimentProperties
+
|MacroAlgae
|DIFFUSION_METHOD
+
|RATIOPC
|Method to compute diffusion coefficeient correction for the sediments. 1 - Berner, 1980 ; 2 - Soetaert, 1996
+
|Macroalgae phosphorus/carbon ratio
|1
+
|
|Berner, 1980
+
|
 
|-
 
|-
| Water
+
| Base 1
|SedimentProperties
+
|MacroAlgae
|DIFFUSION_METHOD
+
|SALT_EFFECT
|Method to compute diffusion coefficeient correction for the sediments. 1 - Berner, 1980 ; 2 - Soetaert, 1996
+
|Include salinity limitation on macroalgae growth
|2
+
|
|Soetaert, 1996
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MLD_Method
+
|SALTCRIT
 +
|Macroalgae critical salinity limit growth
 +
|
 
|
 
|
|3
 
|Maximum value of Brunt-Vaisalla frequency (N)
 
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MLD_Method
+
|SALTMAX
 +
|Macroalgae maximum salinity for growth
 +
|
 
|
 
|
|2
 
|Richardson number (Ri) superior to a critical value.
 
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MLD_Method
+
|SALTMIN
 +
|Macroalgae minimum salinity for growth
 +
|
 
|
 
|
|1
 
|Turbulent kinetic energy (TKE) inferior to a predefined minimum.
 
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|SALTOPT
|Vertical eddy viscosity model
+
|Macroalgae optimum salinity for growth
|file2D
+
|
|Vertical viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|SOLEXCR
|Vertical eddy viscosity model
+
|Fraction of soluble inorganic material excreted by macroalgae
|constant
+
|
|Constant eddy viscosity model. Viscosity value is specified with keyword "VISCOSITY_V". Typical values for real (ocean or estuaries) are in the range 0.1 - 10, depending on vertical length scale and vertical grid spacing. 
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|TCONST1
|Vertical eddy viscosity model
+
|Constant to control temperature response curve shape
|nihoul
+
|
|Uses Nihoul turbulence scheme.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|TCONST2
|Vertical eddy viscosity model
+
|Constant to control temperature response curve shape
|leendertsee
+
|
|Uses Leendertsee turbulence scheme.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|TCONST3
|Vertical eddy viscosity model
+
|Constant to control temperature response curve shape
|pacanowski
+
|
|Uses Pacanowski turbulence scheme.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|TCONST4
|Vertical eddy viscosity model
+
|Constant to control temperature response curve shape
|turbulence_equation
+
|
|Uses a turbulence equation for closure. This is only to be used with GOTM module.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODTURB
+
|TMIN
|Vertical eddy viscosity model
+
|Macroalgae minimum temperature for growth
|backhaus
+
|
|Uses Backhaus turbulence scheme.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODVISH
+
|TOPTMAX
|Horizontal eddy viscosity model.
+
|Macroalgae optimum maximum temperature for growth
|file2D
+
|
|Horizontal viscosity is specified using an ASCII file containing grid data. The file is defined in the block: begin_viscosity_v/end_viscosity_v. Use of this block is specified in the FillMatrix module (Mohid Base 2 project)
+
|
 
 
 
 
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODVISH
+
|TOPTMIN
|Horizontal eddy viscosity model.
+
|Macroalgae optimum minimum temperature for growth
|smagorinsky
+
|
|Smagorinsky turbulence scheme.
+
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|MacroAlgae
|MODVISH
+
|vii24u
|Horizontal eddy viscosity model.
+
|6CUUhg http://www.FyLitCl7Pf7kjQdDUOLQOuaxTXbj5iNG.com
|estuary
+
|
 
|
 
|
 
|-
 
|-
| Water
+
| Base 1
|Turbulence
+
|Profile
|MODVISH
+
|DT_OUTPUT_TIME
|Horizontal eddy viscosity model.
+
|Time step to perform profile outputs in HDF5
|constant
+
|
|Constant horizontal viscosity
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|Profile
|ADV_METHOD_H
+
|LOCALIZATION_I
|Horizontal advection discretization.
+
|Grid cell index I where to perform profile output
|1
+
|
|UpwindOrder1
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|Profile
|ADV_METHOD_H
+
|LOCALIZATION_J
|Horizontal advection discretization.
+
|Grid cell index J where to perform profile output
|4
+
|
|P2_TVD
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|Profile
|ADV_METHOD_H
+
|NAME
|Horizontal advection discretization.
+
|Name of profile output
|5
+
|
|CentralDif
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_H
+
|Acoef
|Horizontal advection discretization.
+
|Coeficient for labil OM decay rate
|2
+
|
|UpwindOrder2
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_H
+
|Acoef
|Horizontal advection discretization.
+
|Coeficient for labil OM decay rate
|3
+
|
|UpwindOrder3
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_V
+
|Acoef
|Vertical advection discretization.
+
|Acoef for Heterotrophs decay rate
|1
+
|
|UpwindOrder1
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_V
+
|Acoef
|Vertical advection discretization.
+
|Acoef for Autotrophs C specific decay (death) Rate
|3
+
|
|UpwindOrder3
+
|
 +
|-
 +
| Base 1
 +
|SedimentQuality
 +
|Acoef
 +
|Acoef for the Anaerobic C specific decay (death) Rate
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_V
+
|Acoef
|Vertical advection discretization.
+
|Calculates the AmmoniaToNitrate (nitrification) specific Rate
|4
+
|
|P2_TVD
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_V
+
|Acoef
|Vertical advection discretization.
+
|A coef for
|2
+
the AmmoniaImobilization specific Rate
|UpwindOrder2
+
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADV_METHOD_V
+
|Acoef
|Vertical advection discretization.
+
|Acoef for for the NitrateToNgas specific Rate (denitrification)
|5
+
|
|CentralDif
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADVECTION_H_IMP_EXP
+
|Acoef
|Horizontal advection computed using a implicit/explicit discretization for this property.
+
|Acoef for the  NitrateImobilization specific Rate
|1
+
|
|Explicit discretization
+
|
 +
|-
 +
| Base 1
 +
|SedimentQuality
 +
|AE
 +
|Activation Energy for labil organic mater carbon decay rate
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADVECTION_H_IMP_EXP
+
|AE
|Horizontal advection computed using a implicit/explicit discretization for this property.
+
|Coeficient for refractory OM decay rate
|0
+
|
|Implicit discretization
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADVECTION_V_IMP_EXP
+
|AE
|Vertical advection computed using a implicit/explicit discretization for this property.
+
|AE for Heterotrophs decay rate
|1
+
|
|Explicit discretization.
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|ADVECTION_V_IMP_EXP
+
|AE
|Vertical advection computed using a implicit/explicit discretization for this property.
+
|AE activation energy for the Autotrophs C specific decay (death) Rate
|0
+
|
|Implicit discretization.
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|AE
|Boundary condition for this property.
+
|AE for the Anaerobic C specific decay (death) Rate
|3
+
|
|VerticalDiffusion
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|AE
|Boundary condition for this property.
+
|Calculates the AmmoniaToNitrate (nitrification) specific Rate.
|8
+
|
|CyclicBoundary
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|AE
|Boundary condition for this property.
+
|Calculates the AmmoniaImobilization specific Rate
|6
+
|
|Orlanski
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|AE
|Boundary condition for this property.
+
|Activation Energy for the NitrateToNgas specific Rate
|1
+
|
|MassConservation
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|AE
|Boundary condition for this property.
+
|Activation Energy for the  NitrateImobilization specific Rate
|4
+
|
|NullGradient
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|CARBON
|Boundary condition for this property.
+
|Determines if calculations of carbon related properties is performed
|5
+
|
|SubModel
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_CONDITION
+
|CARBON_EFICIENCY
|Boundary condition for this property.
+
|Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2
|2
+
|
|ImposedValue
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_INITIALIZATION
+
|CARBON_EFICIENCY
|Processes considered to initialize the boundary values of this property
+
|Carbon assimilation efficiency for Anaerobic population
|EXTERIOR
+
|
|A value exterior to the domain is be imposed (a constant value).
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|BOUNDARY_INITIALIZATION
+
|CN_RATIO
|Processes considered to initialize the boundary values of this property
+
|CN ratio of Hetrotrophs biomass
|INTERIOR
+
|
|Boundaries equal to the values given
+
|
in the same cells during the domain initialization.
 
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DECAY_TIME
+
|CN_RATIO
|Decay time of this property in the boundary.
+
|CN ratio of Autotrophs biomass
|0
+
|
|Property value at the boundary remains constant.
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DENSITY_METHOD
+
|CN_RATIO
|Method to compute water density
+
|CN ratio of anaerobic population.
|1
+
|
|Leendertse
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DENSITY_METHOD
+
|DTSECONDS
|Method to compute water density
+
|Time step for sediment quality calculation
|2
+
|
|UNESCO (in-situ temperature)
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DENSITY_METHOD
+
|EXPLICIT
|Method to compute water density
+
|Sistem is solved with explicit formulation
|3
+
|
|Linear
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DENSITY_METHOD
+
|MINIMUM_POPULATION
|Method to compute water density
+
|Minimum population for death rate to occur (below value no death)
|5
+
|
|Jackett and McDougall 1995
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DENSITY_METHOD
+
|MINIMUM_POPULATION
|Method to compute water density
+
|Minimum population for death rated to take place
|4
+
|
|Mellor 1996
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DIFFUSION_V_IMP_EXP
+
|MINIMUM_POPULATION     
|Vertical diffusion computed using a implicit/explicit discretization for this property.
+
|Minimum population for death rate top occur
|1
+
|
|Explicit discretization.
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DIFFUSION_V_IMP_EXP
+
|NITROGEN
|Vertical diffusion computed using a implicit/explicit discretization for this property.
+
|Option to activate or deactivate the calculation of Nitrogen related properties
|0
+
|
|Implicit discretization.
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DOSAT_TYPE
+
|NITROGEN_EFICIENCY
|Method to compute dissolved oxygen saturation
+
|NITROGEN EFICIENCY for autotrophic population
|1
+
|
|Apha
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DOSAT_TYPE
+
|NITROGEN_EFICIENCY
|Method to compute dissolved oxygen saturation
+
|Nitrogen assimilation efficiency of anaerobic population
|2
+
|
|Henry
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|DOSAT_TYPE
+
|POPULATION_CARBON_RATIO
|Method to compute dissolved oxygen saturation
+
|Convertion form carbon concentration to population for Anaerobic populations
|3
+
|
|Mortimer
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_H
+
|POPULATION_CARBON_RATIO
|Horizontal TVD limitation
+
|COnversion form Carbon mass of hetrotrphs to population nºs
|1
+
|
|MinMod
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_H
+
|POPULATION_CARBON_RATIO
|Horizontal TVD limitation
+
|Convertion form carbon biomass to nº of individual cells
|5
+
|
|PDM
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_H
+
|Temperature
|Horizontal TVD limitation
+
|Temperature for Autotrophs C specific decay (death) Rate
|3
+
|
|Muscl
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_H
+
|Temperature
|Horizontal TVD limitation
+
|Optimum temperature for the Anaerobic C specific decay (death) Rate
|4
+
|
|Superbee
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_H
+
|Temperature
|Horizontal TVD limitation
+
|Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate
|2
+
|
|VanLeer
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_V
+
|Temperature
|Vertical TVD limitation
+
|Optimum temperature for the AmmoniaImobilization specific Rate
|2
+
|
|VanLeer
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_V
+
|Temperature
|Vertical TVD limitation
+
|OPtimum temperature for the NitrateToNgas specific Rate
|3
+
|
|Muscl
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|SedimentQuality
|TVD_LIMIT_V
+
|Temperature
|Vertical TVD limitation
+
|Optimum temperature for the  NitrateImobilization specific Rate
|4
+
|
|Superbee
+
|
 +
|-
 +
| Base 1
 +
|SedimentQuality
 +
|Temperature
 +
|Optimum temperature for decay rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|SedimentQuality
 +
|Temperature 
 +
|Optimum Temperature for rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|SedimentQuality
 +
|Temperature 
 +
|Optimum Temperature for rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|TimeSerie
 +
|bsj0Gg
 +
|8i5FYC http://www.FyLitCl7Pf7kjQdDUOLQOuaxTXbj5iNG.com
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|AFG
 +
|Growth coefficient dependent of fishfood availability HalfSaturationConstant
 +
|
 +
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|WaterQuality
|TVD_LIMIT_V
+
|AGE
|Vertical TVD limitation
+
|Water "Age" : Lagrangean property
|1
+
|
|MinMod
+
|
 
|-
 
|-
| Water
+
| Base 1
|WaterProperties
+
|WaterQuality
|TVD_LIMIT_V
+
|ASS_EFIC
|Vertical TVD limitation
+
|Phytoplankton: Assimilation efficiency of flagellates by the zooplankton
|5
+
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ATG
 +
|Growth coefficient dependent of temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ATZ
 +
|Death coefficient dependent of temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|AWG
 +
|Growth coefficient dependent of larvae weight
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|AWZ
 +
|Death coefficient dependent of larvae weight
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BACINGCIL
 +
|Ciliates: Proportion of bacteria in microzooplankton ingestion
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BACMINSUB
 +
|Bacteria: Minimum substract concentration for bacteria uptake
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BACNCONS
 +
|Bacteria: Half-saturation constant for bacteria nutrient uptake
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BACTERIA
 +
|Bacteria: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BACTRATIOOC
 +
|Oxygen: Bacteria Oxygen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BARESPCO
 +
|Bacteria: Excretion Rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BMAXUPTA
 +
|Bacteria: Maximum nutrient uptake at the reference temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BOD
 +
|BOD: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BODCOEF
 +
|BOD: BOD oxidation coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BODOSSAT
 +
|BOD: Oxygen limitation half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BODREF
 +
|BOD: BOD oxidation at the reference temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BRATIONC
 +
|Bacteria: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BTG
 +
|Growth coefficient dependent of temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BTZ
 +
|Death coefficient dependent of temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BWG
 +
|Growth coefficient dependent of larvae weight
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|BWZ
 +
|Death coefficient dependent of larvae weight
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CEXCCONS
 +
|Ciliates: Excretion constant curve
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CEXCFAC
 +
|Ciliates: Excretion factor
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILBACASS
 +
|Ciliates: Assimilation coefficient of bacteria by microzooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILCORATIO
 +
|Oxygen: Oxygen/Carbon ratio in microzooplankton respiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILEFFCAPBA
 +
|Ciliates: Capture efficiency of bacteria
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILEFFCAPPHY
 +
|Ciliates: Capture efficiency of phytoplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILIATE
 +
|Ciliates: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILPHYASS
 +
|Ciliates: Assimilation coefficient of flagellates by microzooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILPREYMIN
 +
|Ciliates: Minimum prey concentration for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CILRATINGZOO
 +
|Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CINGMAX
 +
|Ciliates: Maximum ingestion rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CRATIONC
 +
|Ciliates: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CRATIOPC
 +
|Ciliates: Phosphorus/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|CREFRESP
 +
|Ciliates: Carbon consumption rate by respiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DENITREF
 +
|Nitrogen: Reference denitirfication rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DENSATCO
 +
|Nitrogen: Denitrification half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIASS_EFIC
 +
|Diatoms: Assimilation efficiency of diatoms by zooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIATOMS
 +
|Diatoms: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIDISSDON
 +
|Diatoms: Fraction of dissolved organic material in excretions
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIEXCRCONS
 +
|Diatoms: Excretion constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIFENDREPC
 +
|Diatoms: Endogenous respiration constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIGRAZMIN
 +
|Zooplankton: Minimum diatoms concentration for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIGROWMAX
 +
|Diatoms: Maximum gross growth rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIMORTCON
 +
|Diatoms: Mortality half-saturation Constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIMORTMAX
 +
|Diatoms: Maximum Mortality Rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DINSATCONS
 +
|Diatoms: Nitrogen half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIPHOTOIN
 +
|Diatoms: Optimum light intensity for photosynthesis
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIPHOTORES
 +
|Diatoms: Fraction of actual photosynthesis oxidized by photorespiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIPSATCONS
 +
|Diatoms: Phosphorus half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIRATINGZOO
 +
|Zooplankton: Proportion of diatoms in mesozooplankton ingestion
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIRATIONC
 +
|Diatoms: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIRATIOPC
 +
|Diatoms: Phosphorus/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIRATIOSIC
 +
|Diatoms: Silica/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DISISATCONS
 +
|Diatoms: Silicate half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DISOLEXCR
 +
|Diatoms: Fraction of soluble inorganic material in excretions
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITCONST1
 +
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITCONST2
 +
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITCONST3
 +
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITCONST4
 +
|Diatoms: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITMAX
 +
|Diatoms: Maximum temperature tolerable for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITMIN
 +
|Diatoms: Minimum tolerable temperature for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITOPTMAX
 +
|Diatoms: Maximum temperature of the optimal interval for photosynthesis
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DITOPTMIN
 +
|Diatoms:  Minimum temperature of the optimal interval for photosynthesis
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIZOASS
 +
|Zooplankton: Assimilation coefficient of diatoms by mesozooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DIZOOEFFCAP
 +
|Zooplankton: Capture efficiency of diatoms
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|DTSECONDS
 +
|Time step for water quality processes calculation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|EXCRCONS
 +
|Phytoplankton: Excretion constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|EXPLICIT
 +
|Explicit Method
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FDISSDON
 +
|Phytoplankton: Fraction of dissolved organic material in excretions
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FENDREPC
 +
|Phytoplankton: Endogenous respiration constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FINAL_AGE
 +
|Larvae Final Age
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FINAL_LENGTH
 +
|Larvae Final Length
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FISHFOOD_REF
 +
|Reference food availability
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FMORTCON
 +
|Phytoplankton: Mortality half saturation rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FMORTMAX
 +
|Phytoplankton: Maximum mortality
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FRATIONC
 +
|Phytoplankton: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FRATIOPC
 +
|Phytoplankton: Phosphorus/Carbon ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FREGSATC
 +
|Nutrients: Nutrient regeneration half-saturation rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|FSOLEXCR
 +
|Phytoplankton: Fraction of soluble inorganic in excretions
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|GRAZBACMIN
 +
|Ciliates: Minimum flagellates concentration for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|GRAZCILMIN
 +
|Zooplankton: Minimum microzooplankton concentration for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|GRAZFITOMIN
 +
|Zooplankton: Minimum fagellates concentration for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|GROWMAXF
 +
|Phytoplankton: Maximum growth rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|GROWMAXZ
 +
|Zooplankton: Maximum zooplankton growth rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|IMPLICIT
 +
|Implicit Method Calculation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|INGCONSC
 +
|Ciliates: Half-saturation constant for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|INGCONSZ
 +
|Zooplankton: Half-saturation constant for predation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|INIT_AGE
 +
|Larvae Inital Age
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|INIT_LENGTH
 +
|Larvae Inital Length
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|INTER_AGE
 +
|Larvae Intermediate Age
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|INTER_LENGTH
 +
|Larvae Intermediate Length
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|IVLEVCON
 +
|Zooplankton: Ivlev grazing constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|LARVAE
 +
|Larvae Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|LDENSITY
 +
|Larvae density factor
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|LSHAPE
 +
|Larvae shape factor
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MAXMORTCI
 +
|Ciliates: Maximum Mortality Rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MAXMORTZ
 +
|Zooplankton: Maximum mortality rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MINMORTCI
 +
|Ciliates: Minimum Mortality rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MINMORTZ
 +
|Zooplankton: Minimum mortality rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MINOXYGEN
 +
|Oxygen: Minimum oxygen concentration allowed
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MORTCICOEF
 +
|Ciliates: Mortality coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|MORTZCOEF
 +
|Zooplankton: Shape factor for the mortality curve of zooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NATMORB
 +
|Bacteria: Natural mortality rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NITONRAT
 +
|Oxygen: Oxygen/Carbon in Nitrate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NITRIREF
 +
|Nitrogen: Reference nitrification rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NITROGEN
 +
|Nitrogen: Biogeochemical Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NITSATCO
 +
|Nitrogen: Nitrification half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NMINENR
 +
|Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr)
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NMINR
 +
|Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr)
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NOPCOEF
 +
|Nitrogen: PON decomposition temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NOPREF
 +
|Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON)
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NPHASES
 +
|Number of larvae phases (valid values are 1 and 2)
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|NSATCONS
 +
|Phytoplankton: Nitrogen half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|OCRATIO
 +
|Oxygen: Oxygen/Carbon in CO2
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|OMRATIONC
 +
|Oxygen: Organic Matter Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|OMRATIOPC
 +
|Oxygen: Organic Matter Phosphorus/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHDECOMP
 +
|Nitrogen: Fraction of PON available for mineralization
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHOSOPRAT
 +
|Oxygen: Oxygen/Carbon in Phosphate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHOSPHOR
 +
|Phosphorus: Biogeochemical Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHOTOIN
 +
|Phytoplankton: Optimum light intensity for photosyntesis
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHOTORES
 +
|Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHOTOSOC
 +
|Oxygen: Photosynthesis Oxygen/Carbon ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHYINGCIL
 +
|Ciliates: Proportion of flagellates in microzooplankton ingestion
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHYRATING
 +
|Zooplankton: proportion of phytoplankton in mesozooplankton ingestion
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PHYTO
 +
|Phytoplankton: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PLANK_OC_RAT
 +
|Oxygen: Oxygen/Carbon ratio in plankton respiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PMINNR
 +
|Phosphorus: DOPnr mineralization rate at reference temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PMINNRCOEF
 +
|Phosphorus: DOPnr mineralization temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PMINR
 +
|Phosphorus: DOPre mineralization rate at reference tempearture
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PMINRCOEF
 +
|Phosphorus: DOPre mineralization temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PPARTMIN
 +
|Phosphorus: POP decomposition rate at reference temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|PSATCONS
 +
|Phytoplankton: Phosphorus half-saturation constant
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|rnUbcFbPvQ
 +
|<a href=http://flobots.com/files/#10849>cheap tramadol</a> tramadol dosage rat - tramadol 50mg tablets dogs
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|SEMIIMP
 +
|Semi-implicit Method Calculation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|SIDISSTCOEF
 +
|Silica: Biogenic silica dissolution temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|SIKDISS
 +
|Silica: Biogenic silica dissolution rate in the water column at the reference temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|SILICA
 +
|Silica: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TBCONST1
 +
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TBCONST2
 +
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TBCONST3
 +
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TBCONST4
 +
|Bacteria: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TBMAX
 +
|Bacteria: Maximum temperature tolerable temperature for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TBMIN
 +
|Bacteria: Minimum temperature tolerable for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TDENCOEF
 +
|Nitrogen: Denitrification Temperature Coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TEMPERATURE_REF
 +
|Larvae Reference temperature
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TFCONST1
 +
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TFCONST2
 +
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TFCONST3
 +
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TFCONST4
 +
|Phytoplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TFMAX
 +
|Phytoplankton: Maximum temperature tolerable for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TFMIN
 +
|Phytoplankton: Minimum  temperature tolerable for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TMINNR
 +
|Nitrogen: DONnr mineralization temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TMINR
 +
|Nitrogen: DONr mineralization temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TNITCOEF
 +
|Nitrogen: Nitrification temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TOPTBMAX
 +
|Bacteria: Maximum temperature of the optimal interval for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TOPTBMIN
 +
|Bacteria: Minimum temperature of the optimal interval for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TOPTFMAX
 +
|Phytoplankton: Maximum temperature of the optimal interval for photosyntesis
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TOPTFMIN
 +
|Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TOPTZMAX
 +
|Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TOPTZMIN
 +
|Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TPPARTMINCOEF
 +
|Phosphorus: POP decomposition temperature coefficient
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TZCONST1
 +
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TZCONST2
 +
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TZCONST3
 +
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TZCONST4
 +
|Zooplankton: Constant to control temperature response curve shape
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TZMAX
 +
|Zooplankton: Maximum temperature tolerable for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|TZMIN
 +
|Zooplankton: Minimum temperature tolerable for growth
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZDISSDON
 +
|Zooplankton: Dissolved organic fraction in excretions
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZEXCCONS
 +
|Zooplankton: Excretion constant for zooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZEXCFAC
 +
|Zooplankton: Excretion Factor
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZINGMAX
 +
|Zooplankton: Maximun ingestion rate
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOCILASS
 +
|Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOCRATIO
 +
|Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOO
 +
|Zooplankton: Processes Simulation
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOOEFFCAPCIL
 +
|Zooplankton: Capture efficiency of microzoolankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOOEFFCAPHY
 +
|Zooplankton: Capture efficiency of phytoplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOOPREYMIN
 +
|Zooplankton: Minimum prey concentration for grazing
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZOPHYASS
 +
|Zooplankton: Assimilation coefficient of flagellates by mesozooplankton
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZPREDMOR
 +
|Zooplankton:  Predatory mortality rate (predation by higher trophic levels)
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZRATIONC
 +
|Zooplankton: Nitrogen/Carbon Ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZRATIOPC
 +
|Zooplankton: Phosphorus/Carbon ratio
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZREFRESP
 +
|Zooplankton: Carbon consumption rate by respiration
 +
|
 +
|
 +
|-
 +
| Base 1
 +
|WaterQuality
 +
|ZSOLEXCR
 +
|Zooplankton: Soluble inorganic fraction in excretions
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|BOX_TIME_SERIE
 +
|Output of property values in time series files, integrated in boxes.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|DATA_COLUMN
 +
|Number of column in the time serie file.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|FILENAME
 +
|Path to the file with the time serie.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|IRRIGATION
 +
|Property added by irrigation
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|NO_INTERPOLATION
 +
|NoInterpolation of Value In Time (instead of interpolation calculates the exact amount of property in a time period). This requires VariableDT.
 +
 
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|OUTPUT_HDF
 +
|Output of property values in HDF files.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|OUTPUT_TIME
 +
|Output instants of HDF5 file.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|RADIATION_METHOD
 +
|Method to compute solar radiation
 +
|1
 +
|Climatologic solar radiation algorithm
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|RADIATION_METHOD
 +
|Method to compute solar radiation
 +
|2
 +
|CEQUALW2 solar radiation algorithm
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|RANDOM_COMPONENT
 +
|Random component of property.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|STATISTICS
 +
|Choose to compute the statistics of this property
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|STATISTICS_FILE
 +
|Path to the file with the statistics definition for this property.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|TIME_SERIE
 +
|Output of property values in time series files.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Atmosphere
 +
|TIME_SERIE_LOCATION
 +
|Path to the file that has the time series location characteristics.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|DELINEATE_BASIN
 +
|Option to delineate basin
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|DELINEATION_FILE
 +
|Output deliniation file location
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|DRAINAGE_DIRECTION
 +
|Option to write drainage direction output asci grid file
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|DRAINAGE_DIRECTION_FILE
 +
|Output file location
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|DRAINED_AREA
 +
|Option to write Drained area asci grid data
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|DRAINED_AREA_FILE
 +
|Drained area output file location
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|NEW_TOPOGRAPHY_FILE
 +
|Path to new file that will be created once depretions are removed.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|OUTLET_I
 +
|Outlet cell location (I-Coordinate)
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|OUTLET_J
 +
|Outlet cell location (J- Coordinate)
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|OUTPUT_HDF5
 +
|Output to HDF file
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|REACHES_FILE
 +
|Output file location
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|REMOVE_DEPRESSIONS
 +
|If this option is active basin delimiter removes depretions in the terrain so that evry cell can drain to one of its 8 neighbours
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|RESERVOIRS
 +
|Consider reservoir in the terrain
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|RESERVOIRS_FILE
 +
|Reservoir file location
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|SLOPE_DEPRESSIONS
 +
|Minimum Slope in Depressions
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|TRESHOLD_AREA
 +
|Minimum area that a cell must drain to be marked as river point
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|WRITE_DELINEATION
 +
|Option to write output basin deliniation file
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BasinGeometry
 +
|WRITE_REACHES
 +
|Write output drainage network reach file
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BoxDif
 +
|OUTPUT_FILE
 +
|Output file location
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BoxDif
 +
|TYPE
 +
|Coordinate Type
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|BoxDif
 +
|WRITE_BOXES
 +
|Option to write boxes output file
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|BOXES_VALUES                       
 +
|Sequence of values for each box starting from box 1.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|CoefA
 +
|Coeficient to compute analitical profile.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|CoefB
 +
|Coeficient to compute analitical profile
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|DATA_COLUMN
 +
|DATA_COLUMN is the number of the relevant column in the time serie file.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|DEFAULTVALUE
 +
|Default value when INITIALIZATION_METHOD is used.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|DEPTH_PROFILE
 +
|Sequence of depth values. Used with PROFILE option.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|FILE_IN_TIME
 +
|Defines the kind of reading operation performed in time to modify the field
 +
|PROFILE_TIME_SERIE
 +
|Read solution from various profiles in time
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|FILE_IN_TIME
 +
|Defines the kind of reading operation performed in time to modify the field
 +
|TIMESERIE
 +
|The data is given at a certain location with a time serie. See time series to know about time series file format. File path is given in FILEME. The number of the column containing needed data of the timeserie file must be indicated in DATA_COLUMN.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|FILE_IN_TIME
 +
|Defines the kind of reading operation performed in time to modify the field
 +
|NONE
 +
|Matrix is not modified from reading values from file
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|FILE_IN_TIME
 +
|Defines the kind of reading operation performed in time to modify the field
 +
|HDF
 +
|Reads data from an HDF5 file. There are restrictions regarding file format:
 +
1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid.
 +
2) In the Grid folder it is required to have the data sets: "Bathimetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints".
 +
3) The name of the fields must be recognised by Mohid (see list of supported names)
 +
4) Time data set must contain as many instants as the field data sets
 +
5) Time data set must also contain dates for a period of the same or greater duration of the simulation.
 +
 
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|FILENAME
 +
|Path to the file containing imposed data
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|FILENAME_DEFAULT
 +
|Path to the file containing data for initialization of default value.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|HDF_FIELD_NAME
 +
|HDF5 group name
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_DEFAULT
 +
|Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|PROFILE_TIMESERIE
 +
|Read initial field from various profiles.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|BOXES
 +
|Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILEME keyword) blocks that have specific format.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|LAYERS
 +
|Initialization by horizontal layers. alues are specified with LAYERS_VALUES keyword.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|TIMESERIE
 +
|Reads initial values from a time serie file. If necessary the initial value is interpolated in time.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|CONSTANT
 +
|Constant value for all domain.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|HDF
 +
|Reads initial field from a HDF file. Field is interpolated in time if necessary.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|PROFILE
 +
|Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|ALYTIC PROFILE
 +
|Initialization made by an analitical vertical profile.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|INITIALIZATION_METHOD
 +
|Initial condition data input method.
 +
|ASCII_FILE
 +
|Initialization with text file. File path given at FILEME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.
 +
If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column.
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|LAYERS_VALUES
 +
|Sequence of values for each layer starting from the bottom layer.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|MULTIPLYING_FACTOR
 +
|Data field multiplying factor. HDF5 only.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|NDEPTHS
 +
|Number of values that the define the profile.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|PROFILE_TYPE
 +
|Type of analitical profile
 +
|LINEAR
 +
|Profile has a linear format, given by the following expression:
 +
Value = DefaultValue + CoefA * CellDepth / CoefB
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|PROFILE_TYPE
 +
|Type of analitical profile
 +
|EXPONENTIAL
 +
|Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB)
 +
|-
 +
| Base 2
 +
|FillMatrix
 +
|PROFILE_VALUES
 +
|Sequence of values that constitute the profile.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|DISPLACEMENT_LIMIT
 +
|the maximum displacement that the model allow cell faces to move vertically in meters
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|DOMAINDEPTH
 +
|The depth of the domain lower limit. User must give a value to this keyword or else the model do not run.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|EMPTY_TOP_LAYERS
 +
|Number of empty layers counting from top
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|EQUIDISTANT
 +
|Thickness of layers admitting that all the layers have the same thickness
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|FACES_OPTION
 +
|Methodology to compute areas between cells
 +
|3
 +
|Minimum thickness of the adjacent water columns (advanced user option)
 +
|-
 +
| Base 2
 +
|Geometry
 +
|FACES_OPTION
 +
|Methodology to compute areas between cells
 +
|2
 +
|Average thickness of the adjacent water columns (advised option)
 +
|-
 +
| Base 2
 +
|Geometry
 +
|GRIDMOVEMENTDUMP
 +
|
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|ID
 +
|Domain ID
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|IMPER_COEF_U
 +
|U Coefficient to compute faces areas in U points
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|IMPER_COEF_V
 +
|V Coefficient to compute faces areas in V points
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|IMPER_COEFX_U
 +
|X_U Coefficient to compute faces areas in U points
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|IMPER_COEFX_V
 +
|X_V Coefficient to compute faces areas in V points
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|IMPERMEABILITY
 +
|Consider impermeable cell faces
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|INITIALIZATION_METHOD
 +
|Type of initialization used in the case of a lagrangian coordinate. This is also the reference coordinate in relation to which the lagrangian coordinate suffers distortion function of the vertical velocity
 +
|CARTESIAN
 +
|Cartesian type coordinates
 +
|-
 +
| Base 2
 +
|Geometry
 +
|INITIALIZATION_METHOD
 +
|Type of initialization used in the case of a lagrangian coordinate. This is also the reference coordinate in relation to which the lagrangian coordinate suffers distortion function of the vertical velocity
 +
|SIGMA
 +
|Sigma type coordinates
 +
|-
 +
| Base 2
 +
|Geometry
 +
|LAYERS
 +
|Number of layers
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|LAYERTHICKNESS
 +
|If not equidistant specifies layers thicknesses, starting from bottom layers.  The number of values must be equal to the number of layers
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|MIN_TOP_THICKNESS
 +
|minimum thickness of colapsing cells of the Harmonic domain
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|MINEVOLVELAYERTHICKNESS
 +
|coeficient which indicates how much a Lagrangian layer
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|MINIMUMDEPTH
 +
|water column thickness below which the cell is considered uncovered
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|MININITIALLAYERTHICKNESS
 +
|minimal thickness of the bottom cells
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TOLERANCEDEPTH
 +
|Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and lagrangian (sigma initializaton) coordinate
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TOTALTHICKNESS
 +
|Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|CARTESIANTOP
 +
|A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only)
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|LAGRANGIAN
 +
|Lagrangian coordinates - moves the upper and
 +
lower faces with the vertical flow velocity.
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|FIXSEDIMENT
 +
|Fixed Sediment coordinates
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|FIXSPACING
 +
|Fixed Spacing coordinates - used to study flows close to the bottom
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|SIGMA
 +
|Sigma coordinates
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|SIGMATOP
 +
|A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|HARMONIC
 +
|Harmonic coordinates - the horizontal faces close to the surface
 +
expand and collapse depending on the variation of the surface elevation. This
 +
coordinate was implemented in the geometry module to simulate reservoirs.
 +
|-
 +
| Base 2
 +
|Geometry
 +
|TYPE
 +
|Type of vertical coordinate of the domain
 +
|CARTESIAN
 +
|Cartesian coordinates
 +
|-
 +
| Base 2
 +
|GridData
 +
|EVOLUTION
 +
|Gets if the bathymetry can change in time
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|GridData
 +
|EVOLUTION_FILE
 +
|Path tyo file that describes the time evolution.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|GridData
 +
|FILL_VALUE
 +
|Default value for points with no data
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|GridData
 +
|PROPERTY_NAME
 +
|Name of the property that will change in time
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|GridData
 +
|TYPE_ZUV
 +
|Matrix Types (Centered in Z, U or V)
 +
   
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|CONSTANT_SPACING_X
 +
|Check if the spacing in X is constant
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|CONSTANT_SPACING_Y
 +
|Check if constant Spacing in y is used
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|COORD_TIP
 +
|Coordinate type of grid
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|DX
 +
|Grid spacing dx
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|DY
 +
|Gets DY spacing
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|GRID_ANGLE
 +
|Grid angle with north
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|ILB_IUB
 +
|minimum and maximum i in grid
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|JLB_JUB
 +
|minimum and maximum J in grid
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|LATITUDE
 +
|Latitude of grid
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|LONGITUDE
 +
|Longitude of grid
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|ORIGIN
 +
|X and Y origin of grid
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|HorizontalGrid
 +
|ZONE
 +
|UTM zone of coordinate
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|EXTRAPOLATE_2D
 +
|? Paulo?
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|EXTRAPOLATE_PROFILE
 +
|Chek if the user wants to extrapolate in the vertical
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|IWD_N
 +
|Coefficent use in the inverse weight interpolation
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|JPEQmpoRuT
 +
|<a href=http://flobots.com/files/#10780>order tramadol online</a> buy tramadol 50mg online - tramadol with hydrocodone
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|KERNEL_TYPE
 +
|Type of kernel used in the convolution interpolations
 +
|Exponential
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|KERNEL_TYPE
 +
|Type of kernel used in the convolution interpolations
 +
|Gaussian
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|MAX_DISTANCE
 +
|Max distance for points to be consider in the inverse weight interpolation
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|MAX_ITERATIONS
 +
|Maximum number of iterations allowed in the logistic regression in the data-oriented convolution.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|METHODOLOGY
 +
|The methodology used in the interpolation process
 +
|1
 +
|Conservative convolution
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|METHODOLOGY
 +
|The methodology used in the interpolation process
 +
|2
 +
|NonConservative convolution
 +
 
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|METHODOLOGY
 +
|The methodology used in the interpolation process
 +
|4
 +
|Bilinear
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|METHODOLOGY
 +
|The methodology used in the interpolation process
 +
|5
 +
|Spline 2D
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|METHODOLOGY
 +
|The methodology used in the interpolation process
 +
|6
 +
|Inverse weight
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|METHODOLOGY
 +
|The methodology used in the interpolation process
 +
|3
 +
|Triangulation
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|N_DIM
 +
|The number of dimensions of the field to interpolate
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|N_GROUPS
 +
|Number of groups generated for each dimension in the data-oriented convolution.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|NC_TYPE
 +
|Cheks what class of NonConservative convolution process to use
 +
|2
 +
|Smoothes the field using the PHI value
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|NC_TYPE
 +
|Cheks what class of NonConservative convolution process to use
 +
|3
 +
|Data
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|NC_TYPE
 +
|Cheks what class of NonConservative convolution process to use
 +
|1
 +
|User defined kernel for the NonConservative convolution
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|PHI
 +
|Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1].
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|POLI_DEGREE_VERT
 +
|The order of the polinomial use to interpolate in the vertical
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|SAMPLE_SIZE
 +
|Number of observations needed for the logistic regression in the data-oriented convolution.
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Interpolation
 +
|TYPE_ZUV
 +
|Where points are defined in the cell (Z - center; U - Face U; V : Face V)
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|DAILY_STATISTIC
 +
|Performs dayly integration of statistic values
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|GEOMETRIC_MEAN
 +
|Performs geometric mean calculation for non negative parameters
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|GLOBAL_STATISTIC
 +
|Performs statistic calculation os every timestep
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|LAYER_DEFINITION
 +
|Layer defenition
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|MAX_DEPTH
 +
|Max depth of layer
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|MAX_LAYER
 +
|Max layer k index
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|METHOD_STATISTIC
 +
|Way to perform the statistcis (full matrix, layers, etc)
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|MIN_DEPTH
 +
|Minumum depth of layer
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|MIN_LAYER
 +
|Layer lower index start
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|MONTHLY_STATISTIC
 +
|Performs montly integration of statistic values
 +
|
 +
|
 +
|-
 +
| Base 2
 +
|Statistic
 +
|PERCENTILE
 +
|
 +
|
 +
|
 +
|-
 +
| Land
 +
|Runoff
 +
|MIN_SLOPE
 +
|Slope between overland waterlevel and channel waterlevel from which fluxes between overland flow and channel flow are calculted
 +
|
 +
|
 +
|-
 +
| Land
 +
|Runoff
 +
|ROUTING
 +
|The overland flow routing method. Possible values:
 +
1 - Manning
 +
2 - Chezy
 +
 
 +
|2
 +
|Chezy Equation
 +
|-
 +
| Land
 +
|Runoff
 +
|ROUTING
 +
|The overland flow routing method. Possible values:
 +
1 - Manning
 +
2 - Chezy
 +
 
 +
|1
 +
|Manning Equation
 +
|-
 +
| Water
 +
|Assimilation
 +
|COLD_RELAX_PERIOD
 +
|Period of time along which relaxation has a linear increase
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|DESCRIPTION
 +
|Short description about the assimilation property
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|DIMENSION
 +
|Number of dimensions of the assimilation field
 +
|3
 +
|Three-Dimensional property
 +
|-
 +
| Water
 +
|Assimilation
 +
|DIMENSION
 +
|Number of dimensions of the assimilation field
 +
|2
 +
|Two-Dimensional property
 +
|-
 +
| Water
 +
|Assimilation
 +
|NAME
 +
|Name of the assimilation property
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|OUTPUT_HDF
 +
|Output HDF results for assimilation property
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|OUTPUT_TIME
 +
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|TIME_SERIE
 +
|Output time series for assimilation property
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|TIME_SERIE_LOCATION
 +
|Path to time serie locations file
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|TYPE_ZUV
 +
|Reference of the field to the grid.
 +
|U
 +
|Variable is referenced to the XX faces of the control volume
 +
|-
 +
| Water
 +
|Assimilation
 +
|TYPE_ZUV
 +
|Reference of the field to the grid.
 +
|Z
 +
|Variable is defined in the center of the control volume
 +
|-
 +
| Water
 +
|Assimilation
 +
|TYPE_ZUV
 +
|Reference of the field to the grid.
 +
|V
 +
|Variable is referenced to the YY faces of the control volume
 +
|-
 +
| Water
 +
|Assimilation
 +
|TYPE_ZUV
 +
|Reference of the field to the grid.
 +
|V
 +
|Variable is referenced to the YY faces of the control volume
 +
|-
 +
| Water
 +
|Assimilation
 +
|TYPE_ZUV
 +
|Reference of the field to the grid.
 +
|U
 +
|Variable is referenced to the XX faces of the control volume
 +
|-
 +
| Water
 +
|Assimilation
 +
|TYPE_ZUV
 +
|Reference of the field to the grid.
 +
|Z
 +
|Variable is defined in the center of the control volume
 +
 
 +
 
 +
|-
 +
| Water
 +
|Assimilation
 +
|UNITS
 +
|Assimilation property units
 +
|
 +
|
 +
|-
 +
| Water
 +
|Assimilation
 +
|VGROUP_PATH
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|BOXFLUXES
 +
|Path to boxes file. If specified in input data file, computes box integration based on the defined file.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|COMPUTE_SHEAR_STRESS
 +
|Compute shear stress or read from file
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|CONSOLIDATION
 +
|Specifies if consolidation is to be computed
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|CONSOLIDATION_DT
 +
|Time step for consolidation
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|CONTINUOUS
 +
|Speficies if initialization is based in previous run
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|CSE_COEF
 +
|Coeficient to compute exponential increase of critical shear stress for erosion with depth
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|DECAYMENT
 +
|Computes porosity decayment (compaction) inside the sediment compartment
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|DECAYTIME
 +
|Decay factor for consolidation
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|INFINITE_CSE
 +
|Maximum critical shear stress for erosion
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|MAX_THICKNESS
 +
|Maximum layer thickness allowed for a sediment layer
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|MIN_THICKNESS
 +
|Minimum thickness allowed for a sediment layer
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|OUTPUT_HDF
 +
|Output HDF results
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|OUTPUT_TIME
 +
|Vector with instants (starting from 0) when to perform outputs. The last number in the vector is the time step to perform the remaining outputs.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|SURFACE_CSE
 +
|Critical shear stress for erosion for the top layer
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|TIME_SERIE
 +
|Output time series
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|TIME_SERIE_LOCATION
 +
|Path to time serie locations file
 +
|
 +
|
 +
|-
 +
| Water
 +
|Consolidation
 +
|WPukVRHmmP
 +
|<a href=http://flobots.com/files/#23654>helpful resources</a> tramadol online without rx - vicodin vs ultram tramadol
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|CHS
 +
|Hindered settling concentration threshold
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|DEPOSITION
 +
|Compute deposition for particulate property
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|FREEVERT_IMPEXP_ADV
 +
|Coeficient to compute vertical movement through implicit or explicit methods
 +
|1.0
 +
|Explicit
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|FREEVERT_IMPEXP_ADV
 +
|Coeficient to compute vertical movement through implicit or explicit methods
 +
|0.0
 +
|Implicit
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|KL
 +
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|KL1
 +
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|M
 +
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|ML
 +
|Parameter to compute settling velocity based on cohesive sediment concentration
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|SALTINT
 +
|Definition of free vertical movement being function of salinity
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|SALTINTVALUE
 +
|Salinity limit. For salinity values smaller the settling velocity is zero. For salinity values greater then this limit the settling velocity is computed/prescribed.
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|WS_TYPE
 +
|Method to compute settling velocity
 +
|1
 +
|Prescribe a constant settling velocity for particulate property
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|WS_TYPE
 +
|Method to compute settling velocity
 +
|2
 +
|Compute settling velocity as function of cohesive sediment concentration
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|ws_value
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|FreeVerticalMovement
 +
|WS_VALUE
 +
|Prescribed constant settling velocity
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ADV_METHOD_H
 +
|!!! Defines the horizontal numerical method of advection.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ADV_METHOD_V
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ATM_PRESSURE
 +
|Checks if the user wants to consider the effect of the Atmospheric Pressure
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ATM_PRESSURE_TYPE
 +
|0 - no atmospheric reference field
 +
1 - use "atmospheric pressure" from Module Atmosphere
 +
2 - use "mslp" (aka Mean Sea Level Pressure) from Module Atmosphere
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC
 +
|Checks if the user pretends to compute the baroclinic pressure
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_METHOD
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_OBC_DISCRET
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_POLIDEGREE
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_RADIATION
 +
|Check if the user wants to radiate internal tides
 +
|0
 +
|No radiation
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_RADIATION
 +
|Check if the user wants to radiate internal tides
 +
|2
 +
|Vertical
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_RADIATION
 +
|Check if the user wants to radiate internal tides
 +
|1
 +
|Horizontal
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BAROCLINIC_WAVE_DT
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|begin_dragcoef
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BIHARMONIC
 +
|Check if the user wants to compute the horizontal diffusion of momentum with a bi-harmonic formulation
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BIHARMONIC_COEF
 +
|horizontal diffusion ocefficent used when the bi-harmonic option is on
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BOTTOMVISC_COEF
 +
|Factor that multiplies diffusion number for imposing a maximum viscosity at bottom layer
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BOTTOMVISC_LIM
 +
|Limitation of viscosity at the bottom due to semi-implicit discretization of shear stress on hydrodynamic equations.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BOTTOMWATERFLUX
 +
|Checks if the user want to consider the effect of the soil infiltration or consolidation
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BOUNDARYBAROCLINIC
 +
|Check if the user wants to compute the baroclinic force in the boundary faces
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BOUNDARYFILE
 +
|The file name of 3D file where the relaxation coefficient are.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BOXFLUXES
 +
|The user can give the name of the file boxes definition. If this file exist then the model computes water fluxes between boxes
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BRCORIOLIS
 +
|Checks if the user wants to relax the coriolis force
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BRFORCE
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BRROX
 +
|Checks if the user wants to relax the baroclinic force
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BRTRANSPORT
 +
|Checks if the user wants to relax the horizontal momentum transport
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BRVELOCITY
 +
|Checks if the user wants to relax the horizontal velocity
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|BRWATERLEVEL
 +
|Checks if the user wants to relax the water level
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CELERITY_TYPE
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CENTRIFUGAL
 +
|Checks if the user want to consider the CENTRIFUGAL force. By default the CENTRIFUGAL force is not compute
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CONSERVATIVE_HOR_DIF
 +
|Check if the user wants to compute the horizontal diffusion in a conservative way.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CONTINUOUS
 +
|Checks if the user pretends to continue a old run
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CORIOLIS
 +
|Checks  if the user pretends to compute the coriolis force effect
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CORRECT_WATERLEVEL
 +
|check if the user wants to corrected the water level when it is lower than a reference water level
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CYCLIC_BOUNDARY
 +
|Check if the user wants to impose a CYCLIC boundary condition
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CYCLIC_DIRECTION
 +
|Check along which direction the user wants to impose a CYCLIC boundary condition
 +
|DirectionY_
 +
|Direction Y
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CYCLIC_DIRECTION
 +
|Check along which direction the user wants to impose a CYCLIC boundary condition
 +
|DirectionX_
 +
|Direction x
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|CYCLIC_DIRECTION
 +
|Check along which direction the user wants to impose a CYCLIC boundary condition
 +
|DirectionXY_
 +
|Directions X and Y
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DATA_ASSIMILATION
 +
|Checks if the user want to impose a flow relaxation boundary condition. By default do not use flow relaxation boundary condition
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DEADZONE
 +
|Check if the user wants to define a dead zone where the submodel do not look for information in the father model.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DEADZONE_FILE
 +
|Its a griddata file, filled with 0s and 1s indicating which cells are deadzone and which cells are not.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DECAY_IN
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DECAY_OUT
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DISCRETIZATION
 +
|Check what type of implicit discretization in time is choose for the global equations
 +
|1
 +
|Abbott Scheme - 4 equations per iteration
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DISCRETIZATION
 +
|Check what type of implicit discretization in time is choose for the global equations
 +
|2
 +
|Leendertse Scheme - 6 equations per iteration
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|DT_OUTPUT_TIME
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ENERGY
 +
|Check if the user want to compute the potential and kinetic energy of the entire domain
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ENERGY_DT
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ENERGY_WINDOW
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|ENTERING_WAVE
 +
|Checks if the wave imposed in the boundary is entering in the domain or leaving it
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|EVOLUTION
 +
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 +
|Residual_hydrodynamic
 +
|Residual hydrodynamic
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|EVOLUTION
 +
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 +
|No_hydrodynamic
 +
|No hydrodynamic
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|EVOLUTION
 +
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 +
|Read_File
 +
|Read file
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|EVOLUTION
 +
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 +
|Solve_Equations
 +
|Solve equations
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|EVOLUTION
 +
|Checks out if the user pretends to actualize the hydrodynamic properties computing the equations or reading them from a file there is also the possibility of read the residual flow of the last run and maintain the instant properties equal to the residual ones. The user can also say that the hydrodynamic properties have always null value.
 +
|Vertical1D
 +
|1D vertical model of the water column. Only coriolis and wind stress. Neuman conditions of horizontal null gradient are imposed for velocities and water level.
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|HMIN_ADVECTION
 +
|The user can impose a specific water column heigth below which the horizontal advection is not compute. By default when the water column has less then 0.5 m the advection in not compute
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|HMIN_CHEZY
 +
|Checks the minimum water column height below which the chezy coefficient is constant. By default Hmin_Chezy is equal to 10 cm
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|HMIN_CONVECTION
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|HORIZONTALADVECTION
 +
|Checks  if the user pretends to compute the horizontal advection effect
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|HORIZONTALCONVECTION
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|HORIZONTALDIFFUSION
 +
|Checks  if the user pretends to compute the horizontal diffusion effect
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_HORADVECTION
 +
|Checks if the user wants to compute the horizontal advection implicitly. By default the model do not compute the horizontal advection implicitly
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_HORCONVECTION
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTADVECTION
 +
|Check if the vertical advection is implicit
 +
|0.0
 +
|Explicit
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTADVECTION
 +
|Check if the vertical advection is implicit
 +
|0.5
 +
|Hybrid for option in (0.0, 1.0)
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTADVECTION
 +
|Check if the vertical advection is implicit
 +
|1.0
 +
|Implicit
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTCONVECTION
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTDIFFUSION
 +
|Check if the vertical advection is implicit
 +
|1.0
 +
|Implicit
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTDIFFUSION
 +
|Check if the vertical advection is implicit
 +
|0.5
 +
|Hybrid for option in (0.0, 1.0)
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|IMPLICIT_VERTDIFFUSION
 +
|Check if the vertical advection is implicit
 +
|0.0
 +
|Explicit
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|INERTIAL_PERIODS
 +
|The period after which the total effect of the baroclinic force is compute
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|INITIAL_ELEVATION
 +
|Checks if the user wants to impose a initial elevation
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|INITIAL_ELEVATION_VALUE
 +
|The user define with this keyword the initial elevation value
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|INITIAL_VEL_U
 +
|Checks  if the user pretends to impose a initial U (X) velocity
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|INITIAL_VEL_V
 +
|Checks  if the user pretends to impose a initial V (Y) velocity
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|INTERNAL_CELERITY
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_DENSITY
 +
|Check if the user want to devide the baroclinic pressure by the local density to compute. if this option is false is used the reference density
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|4
 +
|Gauge
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|1
 +
|No local solution
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|2
 +
|Submodel
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|5
 +
|AssimilaPlusSubModel
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|7
 +
|AssimilaGaugeSubModel
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|6
 +
|GaugePlusSubModel
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|LOCAL_SOLUTION
 +
|Check what type o local (or reference) solution the user wants to use as a reference for the radiative and relaxation boundary conditions
 +
|3
 +
|AssimilationField
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|MIN_COMPONENT
 +
|The minimum component of the radiative wave below which the radiation process is canceled
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|MIN_VELOCITY
 +
|The minimum velocity in the open boundary below which the radiation is canceled
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|MIN_WATERLEVEL
 +
|reference level below which the water level is corrected.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|MINVEL_BAROCLINIC
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|MISSING_NULL
 +
|Check if the user wants to replace the missing values by zero
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|MOMENTUM_DISCHARGE
 +
|Checks if the user wants to do a discharge of momentum. By default the model do not have momentum discharges
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NH_ALPHA_LU
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NH_IMPLICIT_COEF_W
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NH_MAXIT
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NH_NORMALIZED_RESIDUAL
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NH_RESIDUAL
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NONHYDROSTATIC
 +
|Checks if the user want to compute the effect of local vertical aceleration over the pressure field
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NORMAL_BAROCLINIC
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NULL_BOUND_HORADV
 +
|Checks if the user wants to assume null horizontal advection in the open boundary
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|NULL_BOUND_HORCONV
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|OBSTACLE
 +
|Checks if the user want to parameterize the influence of an
 +
OBSTACLE in the flow, giving a determined drag coefficient
 +
 
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|OUTPUT_FACES
 +
|Option to output to Hydrodynamic HDF5 file the horizontal velocity component properties in the velocity (U or V) grid.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|OUTPUT_PROFILE
 +
|Perform profile outputs in HDF5 format
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|OUTPUT_TIME
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|POTENTIAL_ALGORITHM
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RADIATION
 +
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
 +
|0
 +
|No Radiation
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RADIATION
 +
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
 +
|1
 +
|FlatherWindWave_
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RADIATION
 +
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
 +
|3
 +
|BlumbergKantha_
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RADIATION
 +
|Checks if the user wants to impose the Flather 1974 radiation boundary condition or other
 +
|2
 +
|FlatherLocalSolution_
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RAMP
 +
|Check if the user wants to start with baroclinic force null and only after a specific period the total force is compute.
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RAMP_START
 +
|This keyword is used to read the initial data Year Month Day Hour Minutes Seconds
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RECORDING
 +
|Checks if the user wants to record the hydrodynamic properties in binary format that can be used latter by the option Read_File of the keyword EVOLUTION. By default the model do not record the flow properties
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|REF_BOUND_WATERLEVEL
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RELAX_REF_VEL
 +
|
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RESIDUAL
 +
|Check if the user want to compute the residual flow
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RESTART_FILE_OUTPUT_TIME
 +
|Output Time to write restart files
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|RESTART_FILE_OVERWRITE
 +
|Defines whether to overwrite the output restart file or not. By default, the output restart is not overwritten
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|SLIPPING_CONDITION
 +
|Checks if the user want to consider the slipping conditition for horizontal diffusion
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|SLOWSTART
 +
|Imposed a specific period in seconds after which the model consider the total imposed boundary wave. Along this period the wave amplitude is multiplie by coefficiente that has linear evolution between 0 and 1.
 +
By default this period is zero seconds
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|STATISTICS
 +
|Checks out if the user pretends the statistics of the hydrodynamic properties
 +
|
 +
|
 +
|-
 +
| Water
 +
|Hydrodynamic
 +
|STATISTICS_FILE
 +
|The statistics definition file of the hydrodynamic properties
 +