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Module CEQUALW2 is a module using the [[CE-QUAL-W2]] ecological model formulations. CE-QUAL-W2 is 2D laterally average hydrodynamic and ecological model developed at the U.S. Corps of Engineers and it's normally used to simulate water quality in reservoirs. Its ecological formulations were adapted and re-programmed into MOHID as Module CEQUALW2. This module is able to simulate 22 properties, including temperature, nutrients (nitrogen, phosphorus and silica biogeochemical cycles), oxygen  and several species of algae (microalgae). The model does not simulate macroalgae, neither the influence of zooplankton in the primary production.
 
Module CEQUALW2 is a module using the [[CE-QUAL-W2]] ecological model formulations. CE-QUAL-W2 is 2D laterally average hydrodynamic and ecological model developed at the U.S. Corps of Engineers and it's normally used to simulate water quality in reservoirs. Its ecological formulations were adapted and re-programmed into MOHID as Module CEQUALW2. This module is able to simulate 22 properties, including temperature, nutrients (nitrogen, phosphorus and silica biogeochemical cycles), oxygen  and several species of algae (microalgae). The model does not simulate macroalgae, neither the influence of zooplankton in the primary production.
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=Keywords=
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 +
'''CequalW2'''
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 +
Keywords                 Data Type         Default          Comment
 +
 +
DTSECONDS                Real                 : 1200.   ! Time step
 +
 +
<begin_algae>
 +
 +
NAME                            Char                                   !Name of the algae
 +
 +
A_GROWTH        Real : 2  !DEFAULT: 2 - Maximum algae growth
 +
 +
A_RESPIRATION  Real : 0.04 !Maximum algae respiration
 +
 +
A_EXCRETION    Real : 0.04 !Maximum algae excretion
 +
 +
A_MORTALITY      Real : 0.1 !Maximum algae mortality
 +
 +
A_HALFSAT_P      Real : 0.003 !Algal half-saturation P [g m^-3]
 +
 +
A_HALFSAT_N    Real : 0.014  !Algal half-saturation N [g m^-3]
 +
 +
A_HALFSAT_SI    Real : 0.0 !Algal half-saturation N [g m^-3]
 +
 +
A_LIGHT_SAT        Real :75 !Algal saturating light intensity at maximum phtosynthetic rate [W m^-2]
 +
 +
A_T1                    Real : 5.0    !Lower temperature for algal growth (ºC)
 +
 +
A_T2                    Real : 25.0  ! Lower temperature for maximum algal growth (ºC)
 +
 +
A_T3                      Real : 35.0  ! Upper temperature for maximum algal growth
 +
 +
A_T4                      Real : 40.0  ! Upper temperature for algal growth
 +
 +
A_K1                      Real : 0.1    !Fraction of algal growth rate at AT1
 +
 +
A_K2                      Real : 0.99  !Fraction of maximum algal growth rate at AT2
 +
 +
A_K3                      Real : 0.99  !Fraction of maximum algal growth rate at AT3
 +
 +
A_K4                      Real : 0.1         !Fraction of algal growth rate at AT4
 +
 +
A_OK1                    Real : 13   
 +
 +
A_OK2                    Real : 11.          !Algal half-saturation coefficients for oxygen consumption [mgO2/l]
 +
 +
A_OK3                    Real : 2.5
 +
 +
A_OK4                    Real : 7.
 +
 +
A_STOICHIOMETRY_P        Real : 0.005  !Algal stoichiometric coefficient for phosphorus
 +
 +
A_STOICHIOMETRY_N        Real : 0.08  !Algal stoichiometric coefficient for nitrogen
 +
 +
A_STOICHIOMETRY_C        Real : 0.45  !Algal stoichiometric coefficient for carbon
 +
 +
A_STOICHIOMETRY_Si        Real : 0.18  !Algal stoichiometric coefficient for silica
 +
 +
A_POM                    Real : 0.8    !Algal stoichiometric coefficient for POM
 +
 +
A_NEQUATIONNUMBER      Integer : 2         !Equation for preference factor (either 1 or 2)
 +
 +
A_AMMONIUM_PREF          Real : 0.001  !half-saturation copreference constant
 +
 +
O2_A_RESPIRATION          Real : 1.1    !Stoichiometry coefficient in respiration
 +
 +
O2_A_GROWTH              Real : 1.4    !Stoichiometry coefficient in growth
 +
 +
<end_algae>
 +
 +
<begin_om>
 +
 +
LDOM_DECAY                  Real : 0.1         !LDOM decay rate [day^-1]
 +
 +
RDOM_DECAY                Real : 0.001         !RDOM decay rate [day^-1
 +
 +
LRDOM_DECAY              Real : 0.01  !Labile to refractory DOM dekay rate [day^-1]
 +
 +
LPOM_DECAY                Real : 0.08         !LPOM decay rate [day^-1]
 +
 +
RPOM_DECAY                Real : 0.001         !RPOM decay rate [day^-1]
 +
 +
LRPOM_DECAY              Real : 0.01         !LRPOM decay rate [day^-1]
 +
 +
OM_STOICHIOMETRY_P        Real : 0.005         !Stoichiometric coef. for phosphorus
 +
 +
OM_STOICHIOMETRY_N          Real : 0.08         !Stoichiometric coef. for nitrogen
 +
 +
OM_STOICHIOMETRY_C          Real : 0.45         !Stoichiometric coef. for carbon
 +
 +
OM_STOICHIOMETRY_SI        Real : 0.18         !Stoichiometric coef. for silica
 +
 +
OM_T1                    Real : 4.0    !Organic Matter Temperature Rate Multipliers
 +
 +
OM_T2                    Real : 25.0 
 +
 +
OM_K1                    Real : 0.1    !Organic Matter Temperature Rate Multipliers
 +
 +
OM_K2                    Real : 0.99
 +
 +
O2_OM                    Real : 1.4  !O2OM - Oxygen stoichiometry for organic matter decay
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 +
<end_om>
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 +
<begin_BOD>
 +
BOD_DECAY                Real : 0.25 !CBOD Decay Rate [day^-1]
 +
 +
BOD_T_COEF                Real : 1.0147 !BOD Temperature Rate Multiplier
 +
 +
BOD_RATIO                Real : 1.85  !Ratio of CBOD5 to ultimate CBOD
 +
 +
BOD_STOICHIOMETRY_P      Real : 0.004 !Phosphorus/CBOD stochiometric ratio
 +
 +
BOD_STOICHIOMETRY_N      Real : 0.06 !Nitrogen/CBOD stochiometric ratio
 +
 +
BOD_STOICHIOMETRY_C      Real : 0.32 !Carbon/CBOD stochiometric ratio
 +
<end_BOD>
 +
 +
<begin_oxygen>
 +
O2_METHOD                Integer : 1 !Method to compute oxygen: 1 – Simple with O2_LIM; 2 – Monod curve; 3 – Ecotoxicity curve
 +
 +
O2LIM                  Real : 0.1 !Dissolved oxygen concentration at which anaerobic processes begin [g m^-3]
 +
 +
O2_K1                    Real : 2.5 !Toxicity equation coefficients for oxygen consumption
 +
 +
O2_K2                    Real : 7
 +
 +
<end_oxygen>
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 +
<begin_nitro>
 +
 +
NH4_DECAY Real : 0.12 !Ammonium Decay Rate [day^-1]
 +
 +
NH4_T1                    Real : 5    !Minimum Temperature (T1)
 +
 +
NH4_T2                    Real : 25.0  !upper temperature (T2)
 +
 +
NH4_K1                    Real : 0.1 !Multiplier factor for T1
 +
 +
NH4_K2                    Real : 0.99  !Multiplier factor for T2
 +
 +
NO3_DECAY                Real : 0.03  !Nitrate Decay Rate [day^-1]
 +
 +
NO3_T1                    Real : 5.0  !Minimum temperature (T1)
 +
 +
NO3_T2                    Real : 25.0  !Optimal temperature (T2)
 +
 +
NO3_K1                    Real : 0.1  !Multiplier factor for T1
 +
 +
NO3_K2                    Real : 0.99  !Multiplier factor for T2
 +
 +
O2_NH4                    Real : 4.57  !O2NH4 - Oxygen stoichiometry for nitrification
 +
 +
<end_nitro>
 +
 +
 +
<begin_epiphyton>
 +
 +
NAME                    Char !Name of the epiphyte
 +
 +
E_GROWTH        Real : 2 !Maximum epiphyte growth
 +
 +
E_RESPIRATION  Real : 0.04 !Maximum epiphyte respiration
 +
 +
E_EXCRETION    Real : 0.04 !Maximum epiphyte excretion
 +
 +
E_MORTALITY      Real : 0.1 !DEFAULT: 0.15 - Maximum epiphyte mortality
 +
 +
E_HALFSAT_P      Real : 0.003 ! epiphyte half-saturation P [g m^-3]
 +
 +
E_HALFSAT_N    Real : 0.014  ! epiphyte half-saturation N [g m^-3]
 +
 +
E_HALFSAT_SI    Real : 0.0 ! epiphyte half-saturation N [g m^-3]
 +
 +
E_LIGHT_SAT        Real : 75 ! epiphyte saturating light intensity at maximum phtosynthetic rate [W m^-2]
 +
 +
E_T1                    Real : 5.0    !Lower temperature for epiphyte growth (ºC)
 +
 +
E_T2                    Real : 25.0  ! Lower temperature for maximum epiphyte growth (ºC)
 +
 +
E_T3                      Real : 35.0  ! Upper temperature for maximum epiphyte growth
 +
 +
E_T4                      Real : 40.0  ! Upper temperature for epiphyte growth
 +
 +
E_K1                      Real : 0.1    !Fraction of epiphyte growth rate at AT1
 +
 +
E_K2                      Real : 0.99  !Fraction of maximum epiphyte growth rate at AT2
 +
 +
E_K3                      Real : 0.99  !Fraction of maximum epiphyte growth rate at AT3
 +
 +
E_K4                      Real : 0.1 !Fraction of epiphyte growth rate at AT4
 +
 +
E_STOICHIOMETRY_P        Real : 0.005 !epiphyte stoichiometric coefficient for phosphorus
 +
 +
E_STOICHIOMETRY_N        Real : 0.08  !epiphyte stoichiometric coefficient for nitrogen
 +
 +
E_STOICHIOMETRY_C        Real : 0.45  !epiphyte stoichiometric coefficient for carbon
 +
 +
E_STOICHIOMETRY_Si        Real : 0.18  !epiphyte stoichiometric coefficient for silica
 +
 +
E_POM                    Real : 0.8    !epiphyte stoichiometric coefficient for POM
 +
 +
E_NEQUATIONNUMBER      Integer : 2 !Equation for preference factor (either 1 or 2)
 +
 +
E_AMMONIUM_PREF          Real : 0.001 !half-saturation copreference constant
 +
 +
O2_E_RESPIRATION          Real : 1.1    !Stoichiometry coefficient in respiration
 +
 +
O2_E_GROWTH              Real : 1.4    !Stoichiometry coefficient in growth
 +
 +
< end_epiphyton >
 +
 +
<begin_phos>
 +
 +
OM_STOICHIOMETRY_P        Real : 0.005 !Stoichiometric coef. for phosphorous
 +
 +
<end_phos>
 +
 +
 +
<begin_ammonia>
 +
 +
OM_STOICHIOMETRY_N        Real : 0.08 !Stoichiometric coef. for phosphorous
 +
 +
<end_ammonia>
 +
 +
<begin_silica>
 +
 +
PARTSI_DECAY              Real : 0.3  !Particulate biogenic silica decay rate [day^-1]
 +
 +
<end_silica>
 +
 +
<begin_dsi>
 +
 +
OM_STOICHIOMETRY_SI      Real : 0.18 !Stoichiometric coef. for silica
 +
 +
<end_dsi>
 +
 +
<begin_ic>
 +
 +
OM_STOICHIOMETRY_C        Real : 0.45  !Stoichiometric coef. for carbon
 +
 +
<end_ic>
 +
 +
'''BenthicCequalW2 '''
 +
 +
 +
DTSECONDS                Real : 1200.
 +
 +
<begin_SOD>
 +
PO4R                      Real : 0.001 ! Release of PO4 by SOD rate
 +
 +
NH4R                      Real : 0.001 ! Release of PO4 by SOD rate
 +
 +
SiR                      Real : 0.1    ! Release of Silica by SOD rate
 +
 +
CO2R                      Real : 0.1    ! Release of CO2 by SOD rate
 +
 +
O2Consumption            Integer : 1      ! Sink of O2 by SOD rate
 +
 +
DefaultO2                Integer : 1      ! If off, consumes O2 only there is no Oxygen
 +
 +
SODT1                    Real : 4. ! T1 for temperature rate multiplier
 +
 +
SODT2                    Real : 35. ! T2 for temperature rate multiplier
 +
 +
SODK1                    Real : 0.1 ! K1 for temperature rate multiplier
 +
 +
SODK2                    Real : 0.99 ! K2 for temperature rate multiplier
 +
 +
<end_SOD>
 +
 +
<begin_det>
 +
 +
DET_DECAY                Real : 0.1 ! Sediment decay rate, [day^-1]
 +
 +
DET_T1                    Real : 4 ! T1 for temperature rate multiplier
 +
 +
DET_T2                    Real : 30 ! T2 for temperature rate multiplier
 +
 +
DET_K1                    Real : 0.1 ! K1 for temperature rate multiplier
 +
 +
DET_K2                    Real : 0.99 ! K2 for temperature rate multiplier
 +
 +
<end_det>
  
 
[[Category:Modules]]
 
[[Category:Modules]]
 
[[Category:MOHID Base 1]]
 
[[Category:MOHID Base 1]]
 
[[Category:Biogeochemistry]]
 
[[Category:Biogeochemistry]]

Revision as of 19:20, 7 April 2014

Module CEQUALW2 is a module using the CE-QUAL-W2 ecological model formulations. CE-QUAL-W2 is 2D laterally average hydrodynamic and ecological model developed at the U.S. Corps of Engineers and it's normally used to simulate water quality in reservoirs. Its ecological formulations were adapted and re-programmed into MOHID as Module CEQUALW2. This module is able to simulate 22 properties, including temperature, nutrients (nitrogen, phosphorus and silica biogeochemical cycles), oxygen and several species of algae (microalgae). The model does not simulate macroalgae, neither the influence of zooplankton in the primary production.

Keywords

CequalW2

Keywords Data Type Default Comment

DTSECONDS Real  : 1200.  ! Time step

<begin_algae>

NAME Char  !Name of the algae

A_GROWTH Real : 2 !DEFAULT: 2 - Maximum algae growth

A_RESPIRATION Real : 0.04 !Maximum algae respiration

A_EXCRETION Real : 0.04 !Maximum algae excretion

A_MORTALITY Real : 0.1 !Maximum algae mortality

A_HALFSAT_P Real : 0.003 !Algal half-saturation P [g m^-3]

A_HALFSAT_N Real : 0.014 !Algal half-saturation N [g m^-3]

A_HALFSAT_SI Real : 0.0 !Algal half-saturation N [g m^-3]

A_LIGHT_SAT Real :75 !Algal saturating light intensity at maximum phtosynthetic rate [W m^-2]

A_T1 Real : 5.0 !Lower temperature for algal growth (ºC)

A_T2 Real : 25.0 ! Lower temperature for maximum algal growth (ºC)

A_T3 Real : 35.0 ! Upper temperature for maximum algal growth

A_T4 Real : 40.0 ! Upper temperature for algal growth

A_K1 Real : 0.1 !Fraction of algal growth rate at AT1

A_K2 Real : 0.99 !Fraction of maximum algal growth rate at AT2

A_K3 Real : 0.99 !Fraction of maximum algal growth rate at AT3

A_K4 Real : 0.1  !Fraction of algal growth rate at AT4

A_OK1 Real : 13

A_OK2 Real : 11.  !Algal half-saturation coefficients for oxygen consumption [mgO2/l]

A_OK3 Real : 2.5

A_OK4 Real : 7.

A_STOICHIOMETRY_P Real : 0.005 !Algal stoichiometric coefficient for phosphorus

A_STOICHIOMETRY_N Real : 0.08 !Algal stoichiometric coefficient for nitrogen

A_STOICHIOMETRY_C Real : 0.45 !Algal stoichiometric coefficient for carbon

A_STOICHIOMETRY_Si Real : 0.18 !Algal stoichiometric coefficient for silica

A_POM Real : 0.8 !Algal stoichiometric coefficient for POM

A_NEQUATIONNUMBER Integer : 2  !Equation for preference factor (either 1 or 2)

A_AMMONIUM_PREF Real : 0.001 !half-saturation copreference constant

O2_A_RESPIRATION Real : 1.1 !Stoichiometry coefficient in respiration

O2_A_GROWTH Real : 1.4 !Stoichiometry coefficient in growth

<end_algae>

<begin_om>

LDOM_DECAY Real : 0.1  !LDOM decay rate [day^-1]

RDOM_DECAY Real : 0.001  !RDOM decay rate [day^-1

LRDOM_DECAY Real : 0.01 !Labile to refractory DOM dekay rate [day^-1]

LPOM_DECAY Real : 0.08  !LPOM decay rate [day^-1]

RPOM_DECAY Real : 0.001  !RPOM decay rate [day^-1]

LRPOM_DECAY Real : 0.01  !LRPOM decay rate [day^-1]

OM_STOICHIOMETRY_P Real : 0.005  !Stoichiometric coef. for phosphorus

OM_STOICHIOMETRY_N Real : 0.08  !Stoichiometric coef. for nitrogen

OM_STOICHIOMETRY_C Real : 0.45  !Stoichiometric coef. for carbon

OM_STOICHIOMETRY_SI Real : 0.18  !Stoichiometric coef. for silica

OM_T1 Real : 4.0 !Organic Matter Temperature Rate Multipliers

OM_T2 Real : 25.0

OM_K1 Real : 0.1 !Organic Matter Temperature Rate Multipliers

OM_K2 Real : 0.99

O2_OM Real : 1.4 !O2OM - Oxygen stoichiometry for organic matter decay

<end_om>

<begin_BOD> BOD_DECAY Real : 0.25 !CBOD Decay Rate [day^-1]

BOD_T_COEF Real : 1.0147 !BOD Temperature Rate Multiplier

BOD_RATIO Real : 1.85 !Ratio of CBOD5 to ultimate CBOD

BOD_STOICHIOMETRY_P Real : 0.004 !Phosphorus/CBOD stochiometric ratio

BOD_STOICHIOMETRY_N Real : 0.06 !Nitrogen/CBOD stochiometric ratio

BOD_STOICHIOMETRY_C Real : 0.32 !Carbon/CBOD stochiometric ratio <end_BOD>

<begin_oxygen> O2_METHOD Integer : 1 !Method to compute oxygen: 1 – Simple with O2_LIM; 2 – Monod curve; 3 – Ecotoxicity curve

O2LIM Real : 0.1 !Dissolved oxygen concentration at which anaerobic processes begin [g m^-3]

O2_K1 Real : 2.5 !Toxicity equation coefficients for oxygen consumption

O2_K2 Real : 7

<end_oxygen>

<begin_nitro>

NH4_DECAY Real : 0.12 !Ammonium Decay Rate [day^-1]

NH4_T1 Real : 5 !Minimum Temperature (T1)

NH4_T2 Real : 25.0 !upper temperature (T2)

NH4_K1 Real : 0.1 !Multiplier factor for T1

NH4_K2 Real : 0.99 !Multiplier factor for T2

NO3_DECAY Real : 0.03 !Nitrate Decay Rate [day^-1]

NO3_T1 Real : 5.0 !Minimum temperature (T1)

NO3_T2 Real : 25.0 !Optimal temperature (T2)

NO3_K1 Real : 0.1 !Multiplier factor for T1

NO3_K2 Real : 0.99 !Multiplier factor for T2

O2_NH4 Real : 4.57 !O2NH4 - Oxygen stoichiometry for nitrification

<end_nitro>


<begin_epiphyton>

NAME Char !Name of the epiphyte

E_GROWTH Real : 2 !Maximum epiphyte growth

E_RESPIRATION Real : 0.04 !Maximum epiphyte respiration

E_EXCRETION Real : 0.04 !Maximum epiphyte excretion

E_MORTALITY Real : 0.1 !DEFAULT: 0.15 - Maximum epiphyte mortality

E_HALFSAT_P Real : 0.003 ! epiphyte half-saturation P [g m^-3]

E_HALFSAT_N Real : 0.014 ! epiphyte half-saturation N [g m^-3]

E_HALFSAT_SI Real : 0.0 ! epiphyte half-saturation N [g m^-3]

E_LIGHT_SAT Real : 75 ! epiphyte saturating light intensity at maximum phtosynthetic rate [W m^-2]

E_T1 Real : 5.0 !Lower temperature for epiphyte growth (ºC)

E_T2 Real : 25.0 ! Lower temperature for maximum epiphyte growth (ºC)

E_T3 Real : 35.0 ! Upper temperature for maximum epiphyte growth

E_T4 Real : 40.0 ! Upper temperature for epiphyte growth

E_K1 Real : 0.1 !Fraction of epiphyte growth rate at AT1

E_K2 Real : 0.99 !Fraction of maximum epiphyte growth rate at AT2

E_K3 Real : 0.99 !Fraction of maximum epiphyte growth rate at AT3

E_K4 Real : 0.1 !Fraction of epiphyte growth rate at AT4

E_STOICHIOMETRY_P Real : 0.005 !epiphyte stoichiometric coefficient for phosphorus

E_STOICHIOMETRY_N Real : 0.08 !epiphyte stoichiometric coefficient for nitrogen

E_STOICHIOMETRY_C Real : 0.45 !epiphyte stoichiometric coefficient for carbon

E_STOICHIOMETRY_Si Real : 0.18 !epiphyte stoichiometric coefficient for silica

E_POM Real : 0.8 !epiphyte stoichiometric coefficient for POM

E_NEQUATIONNUMBER Integer : 2 !Equation for preference factor (either 1 or 2)

E_AMMONIUM_PREF Real : 0.001 !half-saturation copreference constant

O2_E_RESPIRATION Real : 1.1 !Stoichiometry coefficient in respiration

O2_E_GROWTH Real : 1.4 !Stoichiometry coefficient in growth

< end_epiphyton >

<begin_phos>

OM_STOICHIOMETRY_P Real : 0.005 !Stoichiometric coef. for phosphorous

<end_phos>


<begin_ammonia>

OM_STOICHIOMETRY_N Real : 0.08 !Stoichiometric coef. for phosphorous

<end_ammonia>

<begin_silica>

PARTSI_DECAY Real : 0.3 !Particulate biogenic silica decay rate [day^-1]

<end_silica>

<begin_dsi>

OM_STOICHIOMETRY_SI Real : 0.18 !Stoichiometric coef. for silica

<end_dsi>

<begin_ic>

OM_STOICHIOMETRY_C Real : 0.45 !Stoichiometric coef. for carbon

<end_ic>

BenthicCequalW2


DTSECONDS Real : 1200.

<begin_SOD> PO4R Real : 0.001 ! Release of PO4 by SOD rate

NH4R Real : 0.001 ! Release of PO4 by SOD rate

SiR Real : 0.1 ! Release of Silica by SOD rate

CO2R Real : 0.1 ! Release of CO2 by SOD rate

O2Consumption Integer : 1 ! Sink of O2 by SOD rate

DefaultO2 Integer : 1 ! If off, consumes O2 only there is no Oxygen

SODT1 Real : 4. ! T1 for temperature rate multiplier

SODT2 Real : 35. ! T2 for temperature rate multiplier

SODK1 Real : 0.1 ! K1 for temperature rate multiplier

SODK2 Real : 0.99 ! K2 for temperature rate multiplier

<end_SOD>

<begin_det>

DET_DECAY Real : 0.1 ! Sediment decay rate, [day^-1]

DET_T1 Real : 4 ! T1 for temperature rate multiplier

DET_T2 Real : 30 ! T2 for temperature rate multiplier

DET_K1 Real : 0.1 ! K1 for temperature rate multiplier

DET_K2 Real : 0.99 ! K2 for temperature rate multiplier

<end_det>

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