Difference between revisions of "Keyword list"
From MohidWiki
(→ModuleVegetation) |
(→Fertilization Parameters File) |
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| | | | ||
|Real | |Real | ||
| + | |- | ||
| + | |Land | ||
| + | |Vegetation | ||
| + | |PESTICIDE_ID | ||
| + | |Pesticide used in this application (see pesticide database) | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | |Integer | ||
| + | |- | ||
| + | |Land | ||
| + | |Vegetation | ||
| + | |PESTICIDE_APPLICATION_JDAY | ||
| + | |julian day when pesticide application will occur | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | |Integer | ||
| + | |- | ||
| + | |Land | ||
| + | |Vegetation | ||
| + | |PESTICIDE_APPLICATION_HU | ||
| + | |Percentage of POTENTIAL YEARLY HU when pesticide application will occur | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | |Real | ||
| + | |- | ||
| + | |Land | ||
| + | |Vegetation | ||
| + | |PESTICIDE_APPLICATION_KG_HA | ||
| + | |Amount of pesticide applied (kg/ha) | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | |Real | ||
| + | |- | ||
| + | | rowspan="2" |Land | ||
| + | | rowspan="2" |Vegetation | ||
| + | | rowspan="2" |PESTICIDE_CONT_ON | ||
| + | | rowspan="2" | | ||
| + | |1 | ||
| + | |If this is a continuous pesticide application | ||
| + | | rowspan="2" | - | ||
| + | | rowspan="2" | | ||
| + | | rowspan="2" |Boolean | ||
| + | |- | ||
| + | |0 | ||
| + | |or absent if not | ||
| + | |- | ||
| + | |Land | ||
| + | |Vegetation | ||
| + | |PESTICIDE_CONT_DAYS | ||
| + | |how many days of continuous application (read if PESTICIDE_CONT_ON : 1) | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | | | ||
| + | |Integer | ||
|} | |} | ||
| + | |||
| + | ==== Growth Database File ==== | ||
| + | [https://github.com/Mohid-Water-Modelling-System/Mohid/blob/master/Software/MOHIDLand/ModuleVegetation.F90 Source Code] | ||
| + | |||
| + | {| class="wikitable" | ||
| + | |||
| + | |- | ||
| + | ! scope="col" |Project | ||
| + | ! scope="col" |Module | ||
| + | ! scope="col" |Keyword | ||
| + | ! scope="col" |Keyword description | ||
| + | ! scope="col" |Options | ||
| + | ! scope="col" |Option description | ||
| + | ! scope="col" |Default Value | ||
| + | ! scope="col" |Units | ||
| + | ! scope="col" |Type | ||
==MOHID Water== | ==MOHID Water== | ||
Revision as of 16:24, 24 November 2017
Contents
[hide]- 1 MOHID Base 1
- 2 MOHID Base 2
- 3 MOHID Land
- 4 MOHID Water
- 4.1 Module Assimilation
- 4.2 Module Consolidation
- 4.3 Module FreeVerticalMovement
- 4.4 Module Hydrodynamic
- 4.5 Module HydrodynamicFile
- 4.6 Module InterfaceSedimentWater
- 4.7 Module Jet
- 4.8 Module Lagrangian
- 4.9 Module Model
- 4.10 Module Oil
- 4.11 Module Sand
- 4.12 Module SedimentProperties
- 4.13 Module Turbulence
- 4.14 Module WaterProperties
- 4.15 Module Waves
- 5 MOHID Tools
MOHID Base 1
Module Benthos
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | Benthos | BIOSI_DECAY_RATE | Biogenic silica dissolution rate | ||
| Base 1 | Benthos | DIATOMS | Compute diatoms mortality | ||
| Base 1 | Benthos | DIATOMS_MORTALITY | Diatoms mortality rate when deposited | ||
| Base 1 | Benthos | DIATOMS_NC_RATIO | Diatoms Nitrogen/Carbon ratio | ||
| Base 1 | Benthos | DIATOMS_PC_RATIO | Diatoms Phosphorus/Carbon ratio | ||
| Base 1 | Benthos | DIATOMS_SIC_RATIO | Diatoms Silica/Carbon ratio | ||
| Base 1 | Benthos | DT | Time step to compute benthic biogeochemical processes | ||
| Base 1 | Benthos | MIN_OXYGEN | Minimum oxygen concentration for mineralization to occur | ||
| Base 1 | Benthos | NC_RATIO | Nitrogen/Carbon ratio of organic matter | ||
| Base 1 | Benthos | NITROGEN | Compute nitrogen processes | ||
| Base 1 | Benthos | OXYGEN | Compute oxygen processes | ||
| Base 1 | Benthos | PC_RATIO | Phosphorus/Carbon ratio of organic matter | ||
| Base 1 | Benthos | PELAGIC_MODEL | Pelagic model name to which Module Benthos will be coupled | LifeModel | |
| Base 1 | Benthos | WaterQuality | |||
| Base 1 | Benthos | PHOSPHORUS | Compute phosphorus processes | ||
| Base 1 | Benthos | PHYTO | Compute phytoplankton mortality | ||
| Base 1 | Benthos | PHYTO_MORTALITY | Phytoplankton
mortality rate when deposited |
||
| Base 1 | Benthos | PHYTO_NC_RATIO | Phytoplankton Nitrogen/Carbon ratio | ||
| Base 1 | Benthos | PHYTO_PC_RATIO | Phytoplankton Nitrogen/Carbon ratio | ||
| Base 1 | Benthos | PON_DECAY_RATE | Particulate organic nitrogen mineralization rate | ||
| Base 1 | Benthos | PON_DECAY_TFACTOR | Particulate Organic Nitrogen temperature influence factor in mineralization Rate | ||
| Base 1 | Benthos | POP_DECAY_RATE | Particulate organic phosphorus mineralization rate | ||
| Base 1 | Benthos | POP_DECAY_TFACTOR | Particulate Organic Phosphorus temperature influence factor in mineralization Rate | ||
| Base 1 | Benthos | SILICA |
Module CEQUALW2
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | CEQUALW2 | DTSECONDS | time step, in seconds, between two CEQUALW2 calls | ||
| Base 1 | CEQUALW2 | NAME | Algae Property name as defined on Module GlobalData |
Module Discharges
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | Discharges | ALTERNATIVE_LOCATIONS | Activates the automatic search for alternative locations, when the discharge point is not a covered point | ||
| Base 1 | Discharges | CREST_HEIGTH | Crest Height. Parameter needed in the case of the option FLOW_OVER is active (spill flow). | ||
| Base 1 | Discharges | DATA_BASE_FILE | Definition of the data base time series file. If there is one, model assumes that the discharge is time variable | ||
| Base 1 | Discharges | DEFAULT_FLOW_VALUE | Default flow value | ||
| Base 1 | Discharges | DEFAULT_VELOCITY_VALUE | Default velocity associated with the discharge. Important to compute momentum fluxes | ||
| Base 1 | Discharges | DEFAULTVALUE | Water property value | ||
| Base 1 | Discharges | DESCRIPTION | Discharge description | ||
| Base 1 | Discharges | FLOW_COLUMN | Column where the flow is defined in the data base time series file | ||
| Base 1 | Discharges | FLOW_OVER | Computes a negative discharge, function of the water level, also known as spill flow | ||
| Base 1 | Discharges | I_CELL | Line where the discharge is located. When defined, a grid-based discharged is assumed | ||
| Base 1 | Discharges | J_CELL | Column where the discharge is located | ||
| Base 1 | Discharges | K_CELL | Layer where the discharge is located | ||
| Base 1 | Discharges | NAME | Discharge name | ||
| Base 1 | Discharges | NODE_ID | ID of the discharge, when it isn't grid-based | ||
| Base 1 | Discharges | TIME_SERIE_COLUMN | This keyword is used to give to the model the column where the water property associated with this sub-block is defined in the time series. | ||
| Base 1 | Discharges | U_COLUMN | This keyword is used to give to model the column where the velocity X is defined in the data base time series file | ||
| Base 1 | Discharges | V_COLUMN | This keyword is used to give to model the column where the velocity Y is defined in the data base time series file | ||
| Base 1 | Discharges | WEIR_COEF | Weir Coefficient. Parameter needed in the case of the option FLOW_OVER is active (spill flow). | ||
| Base 1 | Discharges | WEIR_LENGTH | Weir Length. Parameter needed in the case of the option FLOW_OVER is active (spill flow). |
Module DrainageNetwork
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | DrainageNetwork | ADVECTION_DIFUSION | Compute advection and diffusion of property | ||
| Base 1 | DrainageNetwork | ADVECTION_SCHEME | Numerical Discretization of Advection. | 1 | UpwindOrder1 (Upwind scheme of 1st order) |
| Base 1 | DrainageNetwork | 5 | CentralDif (Central differences scheme) | ||
| Base 1 | DrainageNetwork | CHECK_NODES | Check nodes consistency in the drainage network file | ||
| Base 1 | DrainageNetwork | CHECK_REACHES | Check reaches consistency in the drainage network file (a reach connects 2 nodes) | ||
| Base 1 | DrainageNetwork | CONTINUOUS | Computations follow from another simulation | ||
| Base 1 | DrainageNetwork | DATA_COLUMN | Number of column in the time series file with the downstream water depth values | ||
| Base 1 | DrainageNetwork | DEFAULT_VALUE | Default value for water depth at the downstream boundary condition | ||
| Base 1 | DrainageNetwork | DEFAULT_VALUE | Default value for this property. Also used as initial value. | ||
| Base 1 | DrainageNetwork | DESCRIPTION | Description of property | ||
| Base 1 | DrainageNetwork | DIFFUSION_SCHEME | Numerical Discretization of Diffusion. | 5 | CentralDif (Central Differences discretization) |
| Base 1 | DrainageNetwork | DIFFUSIVITY | Diffusivity of property | ||
| Base 1 | DrainageNetwork | DISCHARGES | Has water discharges into the drainage network | ||
| Base 1 | DrainageNetwork | DISCHARGES | Check if property has discharges. | ||
| Base 1 | DrainageNetwork | DOWNSTREAM_BOUNDARY | Choose downstream boundary condition | 0 | Dam (flow at the outlet = 0.0) |
| Base 1 | DrainageNetwork | 1 | Normal (solves KynematicWave at the outlet) | ||
| Base 1 | DrainageNetwork | 2 | ImposedWaterDepth | ||
| Base 1 | DrainageNetwork | FILE_IN_TIME | Downstream boundary condition evolution | NONE | Constant evolution of downstream boundary condition (constant water depth) |
| Base 1 | DrainageNetwork | TIMESERIE | Reads a time series with water depth for downstream boundary condition | ||
| Base 1 | DrainageNetwork | FILENAME | Path to the file with the downstream water depth time serie values | ||
| Base 1 | DrainageNetwork | GLOBAL_MANNING | Assigns a Manning rugosity coefficient to all the drainage network channels | ||
| Base 1 | DrainageNetwork | HYDRODYNAMIC_APROX | Chooses the hydrodynamic approximation to be solved in the momentum equation | 1 | KinematicWave (friction = slope gradient) |
| Base 1 | DrainageNetwork | 2 | DiffusionWave (full St Venant equation except for advection) | ||
| Base 1 | DrainageNetwork | 3 | DynamicWave (full St Venant equation) | ||
| Base 1 | DrainageNetwork | INITIAL_WATER_DEPTH | Assigns an initial water depth to all channels. only if continuous computation is not chosen. | ||
| Base 1 | DrainageNetwork | INITIALIZATION_METHOD | Choose initialization method for this property. | CONSTANT | Constant initialization of property |
| Base 1 | DrainageNetwork | MIN_VALUE | Minimum concentration of property. | ||
| Base 1 | DrainageNetwork | MIN_WATER_DEPTH | Minimum water column for computations | ||
| Base 1 | DrainageNetwork | NAME | Name of property | ||
| Base 1 | DrainageNetwork | NETWORK_FILE | Path to the file that describes nodes and reaches | ||
| Base 1 | DrainageNetwork | TIME_SERIE | Output of property values in time series files. | ||
| Base 1 | DrainageNetwork | TIME_SERIE_LOCATION | Path to the file that has the time series location characteristics | ||
| Base 1 | DrainageNetwork | UNITS | Units of property | ||
| Base 1 | DrainageNetwork | XS_CALC | Method to compute trapezoidal cross section (1 - Analytic; 2 - Discretization dH) |
Module Life
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | Life | AFFINITY_NH4 | Affinity for NH4 uptake | ||
| Base 1 | Life | AFFINITY_NO3 | Affinity for NO3 uptake | ||
| Base 1 | Life | AFFINITY_PO4 | Affinity for PO4 uptake | ||
| Base 1 | Life | ALPHA_CHL | Chl specific initial slop of P vs I curve | ||
| Base 1 | Life | ASS_EFFIC | Assimilation efficiency | ||
| Base 1 | Life | ASS_EFFIC_LOW_O2 | Assimilation efficiency @ low O2 | ||
| Base 1 | Life | ASSIMIL_EFFIC | Assimilation efficiency | ||
| Base 1 | Life | BIO_SI_DISS | Biogenic silica dissolution rate | ||
| Base 1 | Life | CHL_DEGRAD_RATE | Chla degradation rate constant | ||
| Base 1 | Life | DENS_DEP_MORT | Density-dependence mortality rate | ||
| Base 1 | Life | DOM_UP_KS | Half saturation value for DOM uptake | ||
| Base 1 | Life | DOMSL_BAC_KS | Bacteria mediated DOMsl Hydrolysis | ||
| Base 1 | Life | DOMSL_BAC_VMAX | Vmax for DOMsl Hydrolysis | ||
| Base 1 | Life | EXC_DOM_SL_FRAC | DOM diverted to semi-labile pool | ||
| Base 1 | Life | EXCRE_UP_FRAC | Excreted fraction of uptake | ||
| Base 1 | Life | EXU_NUT_STRESS | Exudation under nutrient stress | ||
| Base 1 | Life | GRAZ_AVAIL | Availability of Prey X | ||
| Base 1 | Life | GRAZ_UP_KS | Half saturation value for uptake | ||
| Base 1 | Life | LIGHT_LIM_METHOD | Light limitation method | ||
| Base 1 | Life | LYS_REF_CON | Lysis_Ref_Con | ||
| Base 1 | Life | MASS_XEK | Command to make a mass conservation test | ||
| Base 1 | Life | MAX_ASSIMIL | Maximal assimilation rate | ||
| Base 1 | Life | MAX_CHLN_RATIO | Maximal Chl:N ratio | ||
| Base 1 | Life | MAX_NC_RATIO | Maximal N:C ratio | ||
| Base 1 | Life | MAX_PC_RATIO | Maximal P:C ratio | ||
| Base 1 | Life | MAX_SPEC_UP_@10C | Maximum specific uptake @ 10ºC | ||
| Base 1 | Life | MAX_STORE_FILL | Maximal rate of storage filling | ||
| Base 1 | Life | MIN_LYSIS | Minimal lysis rate | ||
| Base 1 | Life | MIN_NC_RATIO | Minimal N:C ratio | ||
| Base 1 | Life | MIN_PC_RATIO | Minimal P:C ratio | ||
| Base 1 | Life | MIXOTROPHY | Hability to perform mixotrophy | ||
| Base 1 | Life | MORT_DOM_SL_FRAC | DOC_SL_Frac | ||
| Base 1 | Life | MORT_O2_DEP | Oxygen-dependent mortality rate | ||
| Base 1 | Life | MORT_POM_FRAC | Fraction of mortality to POM | ||
| Base 1 | Life | MORT_RATE | Temperature-independent mortality rate | ||
| Base 1 | Life | NH4_Ks | PO4 uptake affinity | ||
| Base 1 | Life | NIT_IN_COEF | Nitrification inhibition coefficient | ||
| Base 1 | Life | NIT_O_N_CONV | Nitrification O:N consumption ratio | ||
| Base 1 | Life | NITRIFRADLIM | Light radiation bellow which nitrification occurs | ||
| Base 1 | Life | NITRIFRATE | Nitrification rate | ||
| Base 1 | Life | NO3_Ks | NO3 uptake affinity | ||
| Base 1 | Life | NUT_STRESS_TRESHOLD | Nutrient stress threshold (sedimentation) | ||
| Base 1 | Life | O2_CARB_CONVERS | Oxygen to carbon conversion factor | ||
| Base 1 | Life | O2_KS | Oxygen half saturation constant | ||
| Base 1 | Life | O2_LOW_ASS_EFIC | Oxygen concentration bollow which ass efic is low | ||
| Base 1 | Life | PHOTOINHIBITION | Photoinhibition | ||
| Base 1 | Life | PO4_Ks | PO4 uptake affinity | ||
| Base 1 | Life | POM_BAC_KS | Bacteria mediated POM Hydrolysis MM constant | ||
| Base 1 | Life | POM_BAC_VMAX | Vmax for POM Hydrolysis | ||
| Base 1 | Life | Q10_VALUE | Q10 value for temperature limitation | ||
| Base 1 | Life | REDFIELD_NC | Redfield N:C ratio | ||
| Base 1 | Life | REDFIELD_PC | Redfield P:C ratio | ||
| Base 1 | Life | REDFIELD_SiC | Standard Si:C ratio | ||
| Base 1 | Life | REF_TEMP | Reference temperature | ||
| Base 1 | Life | REF_TEMP_Q10 | Reference temperature for Q10 method | ||
| Base 1 | Life | REL_EXCESS_SI | Release rate of excess silicate | ||
| Base 1 | Life | RESP_BASAL | Basal respiration rate | ||
| Base 1 | Life | RESP_FRAC_PROD | Respired fraction of production | ||
| Base 1 | Life | REST_RESP_@10C | Rest respiration @ 10ºC | ||
| Base 1 | Life | SED_MIN | Minimal sedimentation rate | ||
| Base 1 | Life | SED_NUT_STRESS | Nutrient stress sedimentation rate | ||
| Base 1 | Life | SEDIM_MIN | Minimal sedimentation rate | ||
| Base 1 | Life | SEDIM_NUT_STRESS | Nutrient stress threshold (sedimentation) | ||
| Base 1 | Life | SI_UPTAKE_KS | Silicate uptake Michaelis constant | ||
| Base 1 | Life | SILICA_USE | Set Silica use by the producer | ||
| Base 1 | Life | TEMP_LIM_METHOD | Temperature limitation method |
Module LightExtinction
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | LightExtinction | LW_EXTINCTION_COEF | Long-wave extinction coeficient | ||
| Base 1 | LightExtinction | LW_EXTINCTION_COLUMN | |||
| Base 1 | LightExtinction | LW_EXTINCTION_TYPE | |||
| Base 1 | LightExtinction | LW_PERCENTAGE | |||
| Base 1 | LightExtinction | SW_EXTINCTION_COEF | Short-wave extinction coeficient | ||
| Base 1 | LightExtinction | SW_EXTINCTION_COLUMN | |||
| Base 1 | LightExtinction | SW_EXTINCTION_TYPE | defines which method is used in light extinction estimate | ||
| Base 1 | LightExtinction | SW_KW | Short wave absorption coefficient | ||
| Base 1 | LightExtinction | SW_LW_EXTINCTION_FILE | |||
| Base 1 | LightExtinction | SW_PERCENTAGE |
Module MacroAlgae
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | MacroAlgae | BEACHED_MORT_RATE | Beached drifting macroalgae mortality rate | ||
| Base 1 | MacroAlgae | DEPLIM | Maximum SPM deposition flux allowed for macroalgae to grow | ||
| Base 1 | MacroAlgae | DISSDON | fraction of dissolved organic material excreted by macroalgae | ||
| Base 1 | MacroAlgae | DT | Time step compute macroalgae biogeochemical processes | ||
| Base 1 | MacroAlgae | ENDREPC | Macroalgae endogenous respiration rate | ||
| Base 1 | MacroAlgae | EROCRITSS | Critical shear stress for macroalgae detachment to occur | ||
| Base 1 | MacroAlgae | EXCRCONS | Macroalgae excretion rate | ||
| Base 1 | MacroAlgae | GRAZCONS | Grazing rate over macroalgae | ||
| Base 1 | MacroAlgae | GROWMAX | macroalgae maximum growth rate | ||
| Base 1 | MacroAlgae | MACROALGAE_MINCONC | Minimum residual value for macroalgae abundance | ||
| Base 1 | MacroAlgae | MIN_OXYGEN | Minimum oxygen concentration for macroalgae growth | ||
| Base 1 | MacroAlgae | MORTCON | Macroalgae mortality half saturation constant | ||
| Base 1 | MacroAlgae | MORTMAX | Macroalgae natural mortality rate | ||
| Base 1 | MacroAlgae | NITROGEN | Defines if the user wishes to compute the nitrogen cycle | ||
| Base 1 | MacroAlgae | NSATCONS | nitrogen half-saturation constant for macroalgae | ||
| Base 1 | MacroAlgae | PELAGIC_MODEL | Pelagic biogeochemical module coupled | ||
| Base 1 | MacroAlgae | PHOSPHORUS | Defines if the user wishes to compute the phosphorus cycle | ||
| Base 1 | MacroAlgae | PHOTOIN | macroalgae optimum radiation value | ||
| Base 1 | MacroAlgae | PHOTORES | Macroalgae photorespiration rate | ||
| Base 1 | MacroAlgae | PSATCONS | phosphorus half-saturation constant for macroalgae | ||
| Base 1 | MacroAlgae | RATIONC | Macroalgae nitrogen/carbon ratio | ||
| Base 1 | MacroAlgae | RATIOPC | Macroalgae phosphorus/carbon ratio | ||
| Base 1 | MacroAlgae | SALT_EFFECT | Include salinity limitation on macroalgae growth | ||
| Base 1 | MacroAlgae | SALTCRIT | Macroalgae critical salinity limit growth | ||
| Base 1 | MacroAlgae | SALTMAX | Macroalgae maximum salinity for growth | ||
| Base 1 | MacroAlgae | SALTMIN | Macroalgae minimum salinity for growth | ||
| Base 1 | MacroAlgae | SALTOPT | Macroalgae optimum salinity for growth | ||
| Base 1 | MacroAlgae | SOLEXCR | Fraction of soluble inorganic material excreted by macroalgae | ||
| Base 1 | MacroAlgae | TCONST1 | Constant to control temperature response curve shape | ||
| Base 1 | MacroAlgae | TCONST2 | Constant to control temperature response curve shape | ||
| Base 1 | MacroAlgae | TCONST3 | Constant to control temperature response curve shape | ||
| Base 1 | MacroAlgae | TCONST4 | Constant to control temperature response curve shape | ||
| Base 1 | MacroAlgae | TMIN | Macroalgae minimum temperature for growth | ||
| Base 1 | MacroAlgae | TOPTMAX | Macroalgae optimum maximum temperature for growth | ||
| Base 1 | MacroAlgae | TOPTMIN | Macroalgae optimum minimum temperature for growth |
Module Profile
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | Profile | DT_OUTPUT_TIME | Time step to perform profile outputs in HDF5 | ||
| Base 1 | Profile | LOCALIZATION_I | Grid cell index I where to perform profile output | ||
| Base 1 | Profile | LOCALIZATION_J | Grid cell index J where to perform profile output | ||
| Base 1 | Profile | NAME | Name of profile output |
Module SedimentQuality
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | SedimentQuality | Acoef | Coefficient for labile OM decay rate | ||
| Base 1 | SedimentQuality | Acoef | Coefficient for labile OM decay rate | ||
| Base 1 | SedimentQuality | Acoef | Acoef for Heterotrophs decay rate | ||
| Base 1 | SedimentQuality | Acoef | Acoef for Autotrophs C specific decay (death) Rate | ||
| Base 1 | SedimentQuality | Acoef | Acoef for the Anaerobic C specific decay (death) Rate | ||
| Base 1 | SedimentQuality | Acoef | Calculates the AmmoniaToNitrate (nitrification) specific Rate | ||
| Base 1 | SedimentQuality | Acoef | A coef for
the AmmoniaImobilization specific Rate |
||
| Base 1 | SedimentQuality | Acoef | Acoef for for the NitrateToNgas specific Rate (denitrification) | ||
| Base 1 | SedimentQuality | Acoef | Acoef for the NitrateImobilization specific Rate | ||
| Base 1 | SedimentQuality | AE | Activation Energy for labil organic mater carbon decay rate | ||
| Base 1 | SedimentQuality | AE | Coeficient for refractory OM decay rate | ||
| Base 1 | SedimentQuality | AE | AE for Heterotrophs decay rate | ||
| Base 1 | SedimentQuality | AE | AE activation energy for the Autotrophs C specific decay (death) Rate | ||
| Base 1 | SedimentQuality | AE | AE for the Anaerobic C specific decay (death) Rate | ||
| Base 1 | SedimentQuality | AE | Calculates the AmmoniaToNitrate (nitrification) specific Rate. | ||
| Base 1 | SedimentQuality | AE | Calculates the AmmoniaImobilization specific Rate | ||
| Base 1 | SedimentQuality | AE | Activation Energy for the NitrateToNgas specific Rate | ||
| Base 1 | SedimentQuality | AE | Activation Energy for the NitrateImobilization specific Rate | ||
| Base 1 | SedimentQuality | CARBON | Determines if calculations of carbon related properties is performed | ||
| Base 1 | SedimentQuality | CARBON_EFICIENCY | Efifiency on the assimilation of carbon for the Hetrotrophic population. The remaining is lost as CO2 | ||
| Base 1 | SedimentQuality | CARBON_EFICIENCY | Carbon assimilation efficiency for Anaerobic population | ||
| Base 1 | SedimentQuality | CN_RATIO | CN ratio of Hetrotrophs biomass | ||
| Base 1 | SedimentQuality | CN_RATIO | CN ratio of Autotrophs biomass | ||
| Base 1 | SedimentQuality | CN_RATIO | CN ratio of anaerobic population. | ||
| Base 1 | SedimentQuality | DTSECONDS | Time step for sediment quality calculation | ||
| Base 1 | SedimentQuality | EXPLICIT | Sistem is solved with explicit formulation | ||
| Base 1 | SedimentQuality | MINIMUM_POPULATION | Minimum population for death rate to occur (below value no death) | ||
| Base 1 | SedimentQuality | MINIMUM_POPULATION | Minimum population for death rated to take place | ||
| Base 1 | SedimentQuality | MINIMUM_POPULATION | Minimum population for death rate top occur | ||
| Base 1 | SedimentQuality | NITROGEN | Option to activate or deactivate the calculation of Nitrogen related properties | ||
| Base 1 | SedimentQuality | NITROGEN_EFICIENCY | NITROGEN EFICIENCY for autotrophic population | ||
| Base 1 | SedimentQuality | NITROGEN_EFICIENCY | Nitrogen assimilation efficiency of anaerobic population | ||
| Base 1 | SedimentQuality | POPULATION_CARBON_RATIO | Convertion form carbon concentration to population for Anaerobic populations | ||
| Base 1 | SedimentQuality | POPULATION_CARBON_RATIO | COnversion form Carbon mass of hetrotrphs to population nºs | ||
| Base 1 | SedimentQuality | POPULATION_CARBON_RATIO | Convertion form carbon biomass to nº of individual cells | ||
| Base 1 | SedimentQuality | Temperature | Temperature for Autotrophs C specific decay (death) Rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum temperature for the Anaerobic C specific decay (death) Rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum temperature for the AmmoniaToNitrate (nitrification) specific Rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum temperature for the AmmoniaImobilization specific Rate | ||
| Base 1 | SedimentQuality | Temperature | OPtimum temperature for the NitrateToNgas specific Rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum temperature for the NitrateImobilization specific Rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum temperature for decay rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum Temperature for rate | ||
| Base 1 | SedimentQuality | Temperature | Optimum Temperature for rate |
Module WaterQuality
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 1 | WaterQuality | AFG | Growth coefficient dependent of fishfood availability HalfSaturationConstant | ||
| Base 1 | WaterQuality | AGE | Water "Age" : Lagrangean property | ||
| Base 1 | WaterQuality | ASS_EFIC | Phytoplankton: Assimilation efficiency of flagellates by the zooplankton | ||
| Base 1 | WaterQuality | ATG | Growth coefficient dependent of temperature | ||
| Base 1 | WaterQuality | ATZ | Death coefficient dependent of temperature | ||
| Base 1 | WaterQuality | AWG | Growth coefficient dependent of larvae weight | ||
| Base 1 | WaterQuality | AWZ | Death coefficient dependent of larvae weight | ||
| Base 1 | WaterQuality | BACINGCIL | Ciliates: Proportion of bacteria in microzooplankton ingestion | ||
| Base 1 | WaterQuality | BACMINSUB | Bacteria: Minimum substract concentration for bacteria uptake | ||
| Base 1 | WaterQuality | BACNCONS | Bacteria: Half-saturation constant for bacteria nutrient uptake | ||
| Base 1 | WaterQuality | BACTERIA | Bacteria: Processes Simulation | ||
| Base 1 | WaterQuality | BACTRATIOOC | Oxygen: Bacteria Oxygen/Carbon Ratio | ||
| Base 1 | WaterQuality | BARESPCO | Bacteria: Excretion Rate | ||
| Base 1 | WaterQuality | BMAXUPTA | Bacteria: Maximum nutrient uptake at the reference temperature | ||
| Base 1 | WaterQuality | BOD | BOD: Processes Simulation | ||
| Base 1 | WaterQuality | BODCOEF | BOD: BOD oxidation coefficient | ||
| Base 1 | WaterQuality | BODOSSAT | BOD: Oxygen limitation half-saturation constant | ||
| Base 1 | WaterQuality | BODREF | BOD: BOD oxidation at the reference temperature | ||
| Base 1 | WaterQuality | BRATIONC | Bacteria: Nitrogen/Carbon Ratio | ||
| Base 1 | WaterQuality | BTG | Growth coefficient dependent of temperature | ||
| Base 1 | WaterQuality | BTZ | Death coefficient dependent of temperature | ||
| Base 1 | WaterQuality | BWG | Growth coefficient dependent of larvae weight | ||
| Base 1 | WaterQuality | BWZ | Death coefficient dependent of larvae weight | ||
| Base 1 | WaterQuality | CEXCCONS | Ciliates: Excretion constant curve | ||
| Base 1 | WaterQuality | CEXCFAC | Ciliates: Excretion factor | ||
| Base 1 | WaterQuality | CILBACASS | Ciliates: Assimilation coefficient of bacteria by microzooplankton | ||
| Base 1 | WaterQuality | CILCORATIO | Oxygen: Oxygen/Carbon ratio in microzooplankton respiration | ||
| Base 1 | WaterQuality | CILEFFCAPBA | Ciliates: Capture efficiency of bacteria | ||
| Base 1 | WaterQuality | CILEFFCAPPHY | Ciliates: Capture efficiency of phytoplankton | ||
| Base 1 | WaterQuality | CILIATE | Ciliates: Processes Simulation | ||
| Base 1 | WaterQuality | CILPHYASS | Ciliates: Assimilation coefficient of flagellates by microzooplankton | ||
| Base 1 | WaterQuality | CILPREYMIN | Ciliates: Minimum prey concentration for grazing | ||
| Base 1 | WaterQuality | CILRATINGZOO | Zooplankton: Proportion of microzooplankton in mesozooplankton ingestion | ||
| Base 1 | WaterQuality | CINGMAX | Ciliates: Maximum ingestion rate | ||
| Base 1 | WaterQuality | CRATIONC | Ciliates: Nitrogen/Carbon Ratio | ||
| Base 1 | WaterQuality | CRATIOPC | Ciliates: Phosphorus/Carbon Ratio | ||
| Base 1 | WaterQuality | CREFRESP | Ciliates: Carbon consumption rate by respiration | ||
| Base 1 | WaterQuality | DENITREF | Nitrogen: Reference denitirfication rate | ||
| Base 1 | WaterQuality | DENSATCO | Nitrogen: Denitrification half-saturation constant | ||
| Base 1 | WaterQuality | DIASS_EFIC | Diatoms: Assimilation efficiency of diatoms by zooplankton | ||
| Base 1 | WaterQuality | DIATOMS | Diatoms: Processes Simulation | ||
| Base 1 | WaterQuality | DIDISSDON | Diatoms: Fraction of dissolved organic material in excretions | ||
| Base 1 | WaterQuality | DIEXCRCONS | Diatoms: Excretion constant | ||
| Base 1 | WaterQuality | DIFENDREPC | Diatoms: Endogenous respiration constant | ||
| Base 1 | WaterQuality | DIGRAZMIN | Zooplankton: Minimum diatoms concentration for grazing | ||
| Base 1 | WaterQuality | DIGROWMAX | Diatoms: Maximum gross growth rate | ||
| Base 1 | WaterQuality | DIMORTCON | Diatoms: Mortality half-saturation Constant | ||
| Base 1 | WaterQuality | DIMORTMAX | Diatoms: Maximum Mortality Rate | ||
| Base 1 | WaterQuality | DINSATCONS | Diatoms: Nitrogen half-saturation constant | ||
| Base 1 | WaterQuality | DIPHOTOIN | Diatoms: Optimum light intensity for photosynthesis | ||
| Base 1 | WaterQuality | DIPHOTORES | Diatoms: Fraction of actual photosynthesis oxidized by photorespiration | ||
| Base 1 | WaterQuality | DIPSATCONS | Diatoms: Phosphorus half-saturation constant | ||
| Base 1 | WaterQuality | DIRATINGZOO | Zooplankton: Proportion of diatoms in mesozooplankton ingestion | ||
| Base 1 | WaterQuality | DIRATIONC | Diatoms: Nitrogen/Carbon Ratio | ||
| Base 1 | WaterQuality | DIRATIOPC | Diatoms: Phosphorus/Carbon Ratio | ||
| Base 1 | WaterQuality | DIRATIOSIC | Diatoms: Silica/Carbon Ratio | ||
| Base 1 | WaterQuality | DISISATCONS | Diatoms: Silicate half-saturation constant | ||
| Base 1 | WaterQuality | DISOLEXCR | Diatoms: Fraction of soluble inorganic material in excretions | ||
| Base 1 | WaterQuality | DITCONST1 | Diatoms: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | DITCONST2 | Diatoms: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | DITCONST3 | Diatoms: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | DITCONST4 | Diatoms: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | DITMAX | Diatoms: Maximum temperature tolerable for growth | ||
| Base 1 | WaterQuality | DITMIN | Diatoms: Minimum tolerable temperature for growth | ||
| Base 1 | WaterQuality | DITOPTMAX | Diatoms: Maximum temperature of the optimal interval for photosynthesis | ||
| Base 1 | WaterQuality | DITOPTMIN | Diatoms: Minimum temperature of the optimal interval for photosynthesis | ||
| Base 1 | WaterQuality | DIZOASS | Zooplankton: Assimilation coefficient of diatoms by mesozooplankton | ||
| Base 1 | WaterQuality | DIZOOEFFCAP | Zooplankton: Capture efficiency of diatoms | ||
| Base 1 | WaterQuality | DTSECONDS | Time step for water quality processes calculation | ||
| Base 1 | WaterQuality | EXCRCONS | Phytoplankton: Excretion constant | ||
| Base 1 | WaterQuality | EXPLICIT | Explicit Method | ||
| Base 1 | WaterQuality | FDISSDON | Phytoplankton: Fraction of dissolved organic material in excretions | ||
| Base 1 | WaterQuality | FENDREPC | Phytoplankton: Endogenous respiration constant | ||
| Base 1 | WaterQuality | FINAL_AGE | Larvae Final Age | ||
| Base 1 | WaterQuality | FINAL_LENGTH | Larvae Final Length | ||
| Base 1 | WaterQuality | FISHFOOD_REF | Reference food availability | ||
| Base 1 | WaterQuality | FMORTCON | Phytoplankton: Mortality half saturation rate | ||
| Base 1 | WaterQuality | FMORTMAX | Phytoplankton: Maximum mortality | ||
| Base 1 | WaterQuality | FRATIONC | Phytoplankton: Nitrogen/Carbon Ratio | ||
| Base 1 | WaterQuality | FRATIOPC | Phytoplankton: Phosphorus/Carbon ratio | ||
| Base 1 | WaterQuality | FREGSATC | Nutrients: Nutrient regeneration half-saturation rate | ||
| Base 1 | WaterQuality | FSOLEXCR | Phytoplankton: Fraction of soluble inorganic in excretions | ||
| Base 1 | WaterQuality | GRAZBACMIN | Ciliates: Minimum flagellates concentration for grazing | ||
| Base 1 | WaterQuality | GRAZCILMIN | Zooplankton: Minimum microzooplankton concentration for grazing | ||
| Base 1 | WaterQuality | GRAZFITOMIN | Zooplankton: Minimum fagellates concentration for grazing | ||
| Base 1 | WaterQuality | GROWMAXF | Phytoplankton: Maximum growth rate | ||
| Base 1 | WaterQuality | GROWMAXZ | Zooplankton: Maximum zooplankton growth rate | ||
| Base 1 | WaterQuality | IMPLICIT | Implicit Method Calculation | ||
| Base 1 | WaterQuality | INGCONSC | Ciliates: Half-saturation constant for grazing | ||
| Base 1 | WaterQuality | INGCONSZ | Zooplankton: Half-saturation constant for predation | ||
| Base 1 | WaterQuality | INIT_AGE | Larvae Inital Age | ||
| Base 1 | WaterQuality | INIT_LENGTH | Larvae Inital Length | ||
| Base 1 | WaterQuality | INTER_AGE | Larvae Intermediate Age | ||
| Base 1 | WaterQuality | INTER_LENGTH | Larvae Intermediate Length | ||
| Base 1 | WaterQuality | IVLEVCON | Zooplankton: Ivlev grazing constant | ||
| Base 1 | WaterQuality | LARVAE | Larvae Processes Simulation | ||
| Base 1 | WaterQuality | LDENSITY | Larvae density factor | ||
| Base 1 | WaterQuality | LSHAPE | Larvae shape factor | ||
| Base 1 | WaterQuality | MAXMORTCI | Ciliates: Maximum Mortality Rate | ||
| Base 1 | WaterQuality | MAXMORTZ | Zooplankton: Maximum mortality rate | ||
| Base 1 | WaterQuality | MINMORTCI | Ciliates: Minimum Mortality rate | ||
| Base 1 | WaterQuality | MINMORTZ | Zooplankton: Minimum mortality rate | ||
| Base 1 | WaterQuality | MINOXYGEN | Oxygen: Minimum oxygen concentration allowed | ||
| Base 1 | WaterQuality | MORTCICOEF | Ciliates: Mortality coefficient | ||
| Base 1 | WaterQuality | MORTZCOEF | Zooplankton: Shape factor for the mortality curve of zooplankton | ||
| Base 1 | WaterQuality | NATMORB | Bacteria: Natural mortality rate | ||
| Base 1 | WaterQuality | NITONRAT | Oxygen: Oxygen/Carbon in Nitrate | ||
| Base 1 | WaterQuality | NITRIREF | Nitrogen: Reference nitrification rate | ||
| Base 1 | WaterQuality | NITROGEN | Nitrogen: Biogeochemical Processes Simulation | ||
| Base 1 | WaterQuality | NITSATCO | Nitrogen: Nitrification half-saturation constant | ||
| Base 1 | WaterQuality | NMINENR | Nitrogen: Reference mineralization rate for dissolved organic nitrogen non refractory (DONnr) | ||
| Base 1 | WaterQuality | NMINR | Nitrogen: Reference mineralization rate for Dissolved Organic Nitrogen refractory (DONr) | ||
| Base 1 | WaterQuality | NOPCOEF | Nitrogen: PON decomposition temperature coefficient | ||
| Base 1 | WaterQuality | NOPREF | Nitrogen: Reference Mineralization Rate for Particulate Organic Nitrogen (PON) | ||
| Base 1 | WaterQuality | NPHASES | Number of larvae phases (valid values are 1 and 2) | ||
| Base 1 | WaterQuality | NSATCONS | Phytoplankton: Nitrogen half-saturation constant | ||
| Base 1 | WaterQuality | OCRATIO | Oxygen: Oxygen/Carbon in CO2 | ||
| Base 1 | WaterQuality | OMRATIONC | Oxygen: Organic Matter Nitrogen/Carbon Ratio | ||
| Base 1 | WaterQuality | OMRATIOPC | Oxygen: Organic Matter Phosphorus/Carbon Ratio | ||
| Base 1 | WaterQuality | PHDECOMP | Nitrogen: Fraction of PON available for mineralization | ||
| Base 1 | WaterQuality | PHOSOPRAT | Oxygen: Oxygen/Carbon in Phosphate | ||
| Base 1 | WaterQuality | PHOSPHOR | Phosphorus: Biogeochemical Processes Simulation | ||
| Base 1 | WaterQuality | PHOTOIN | Phytoplankton: Optimum light intensity for photosyntesis | ||
| Base 1 | WaterQuality | PHOTORES | Phytoplankton: Faction of actual photosynthesis oxidised by photorespiration | ||
| Base 1 | WaterQuality | PHOTOSOC | Oxygen: Photosynthesis Oxygen/Carbon ratio | ||
| Base 1 | WaterQuality | PHYINGCIL | Ciliates: Proportion of flagellates in microzooplankton ingestion | ||
| Base 1 | WaterQuality | PHYRATING | Zooplankton: proportion of phytoplankton in mesozooplankton ingestion | ||
| Base 1 | WaterQuality | PHYTO | Phytoplankton: Processes Simulation | ||
| Base 1 | WaterQuality | PLANK_OC_RAT | Oxygen: Oxygen/Carbon ratio in plankton respiration | ||
| Base 1 | WaterQuality | PMINNR | Phosphorus: DOPnr mineralization rate at reference temperature | ||
| Base 1 | WaterQuality | PMINNRCOEF | Phosphorus: DOPnr mineralization temperature coefficient | ||
| Base 1 | WaterQuality | PMINR | Phosphorus: DOPre mineralization rate at reference tempearture | ||
| Base 1 | WaterQuality | PMINRCOEF | Phosphorus: DOPre mineralization temperature coefficient | ||
| Base 1 | WaterQuality | PPARTMIN | Phosphorus: POP decomposition rate at reference temperature | ||
| Base 1 | WaterQuality | PSATCONS | Phytoplankton: Phosphorus half-saturation constant | ||
| Base 1 | WaterQuality | SEMIIMP | Semi-implicit Method Calculation | ||
| Base 1 | WaterQuality | SIDISSTCOEF | Silica: Biogenic silica dissolution temperature coefficient | ||
| Base 1 | WaterQuality | SIKDISS | Silica: Biogenic silica dissolution rate in the water column at the reference temperature | ||
| Base 1 | WaterQuality | SILICA | Silica: Processes Simulation | ||
| Base 1 | WaterQuality | TBCONST1 | Bacteria: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TBCONST2 | Bacteria: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TBCONST3 | Bacteria: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TBCONST4 | Bacteria: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TBMAX | Bacteria: Maximum temperature tolerable temperature for growth | ||
| Base 1 | WaterQuality | TBMIN | Bacteria: Minimum temperature tolerable for growth | ||
| Base 1 | WaterQuality | TDENCOEF | Nitrogen: Denitrification Temperature Coefficient | ||
| Base 1 | WaterQuality | TEMPERATURE_REF | Larvae Reference temperature | ||
| Base 1 | WaterQuality | TFCONST1 | Phytoplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TFCONST2 | Phytoplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TFCONST3 | Phytoplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TFCONST4 | Phytoplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TFMAX | Phytoplankton: Maximum temperature tolerable for growth | ||
| Base 1 | WaterQuality | TFMIN | Phytoplankton: Minimum temperature tolerable for growth | ||
| Base 1 | WaterQuality | TMINNR | Nitrogen: DONnr mineralization temperature coefficient | ||
| Base 1 | WaterQuality | TMINR | Nitrogen: DONr mineralization temperature coefficient | ||
| Base 1 | WaterQuality | TNITCOEF | Nitrogen: Nitrification temperature coefficient | ||
| Base 1 | WaterQuality | TOPTBMAX | Bacteria: Maximum temperature of the optimal interval for growth | ||
| Base 1 | WaterQuality | TOPTBMIN | Bacteria: Minimum temperature of the optimal interval for growth | ||
| Base 1 | WaterQuality | TOPTFMAX | Phytoplankton: Maximum temperature of the optimal interval for photosyntesis | ||
| Base 1 | WaterQuality | TOPTFMIN | Phytoplankton: Minimum temperature of the optimal interval forphotosyntesis | ||
| Base 1 | WaterQuality | TOPTZMAX | Zooplankton: Maximum temperature of the optimal interval for the zooplankton growth | ||
| Base 1 | WaterQuality | TOPTZMIN | Zooplankton: Minimum temperature of the optimal interval for the zooplankton growth | ||
| Base 1 | WaterQuality | TPPARTMINCOEF | Phosphorus: POP decomposition temperature coefficient | ||
| Base 1 | WaterQuality | TZCONST1 | Zooplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TZCONST2 | Zooplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TZCONST3 | Zooplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TZCONST4 | Zooplankton: Constant to control temperature response curve shape | ||
| Base 1 | WaterQuality | TZMAX | Zooplankton: Maximum temperature tolerable for growth | ||
| Base 1 | WaterQuality | TZMIN | Zooplankton: Minimum temperature tolerable for growth | ||
| Base 1 | WaterQuality | ZDISSDON | Zooplankton: Dissolved organic fraction in excretions | ||
| Base 1 | WaterQuality | ZEXCCONS | Zooplankton: Excretion constant for zooplankton | ||
| Base 1 | WaterQuality | ZEXCFAC | Zooplankton: Excretion Factor | ||
| Base 1 | WaterQuality | ZINGMAX | Zooplankton: Maximun ingestion rate | ||
| Base 1 | WaterQuality | ZOCILASS | Zooplankton: Assimilation coefficient of microzooplankton by mesozooplankton | ||
| Base 1 | WaterQuality | ZOCRATIO | Oxygen: Oxygen/Carbon ratio in mesozooplankton respiration | ||
| Base 1 | WaterQuality | ZOO | Zooplankton: Processes Simulation | ||
| Base 1 | WaterQuality | ZOOEFFCAPCIL | Zooplankton: Capture efficiency of microzoolankton | ||
| Base 1 | WaterQuality | ZOOEFFCAPHY | Zooplankton: Capture efficiency of phytoplankton | ||
| Base 1 | WaterQuality | ZOOPREYMIN | Zooplankton: Minimum prey concentration for grazing | ||
| Base 1 | WaterQuality | ZOPHYASS | Zooplankton: Assimilation coefficient of flagellates by mesozooplankton | ||
| Base 1 | WaterQuality | ZPREDMOR | Zooplankton: Predatory mortality rate (predation by higher trophic levels) | ||
| Base 1 | WaterQuality | ZRATIONC | Zooplankton: Nitrogen/Carbon Ratio | ||
| Base 1 | WaterQuality | ZRATIOPC | Zooplankton: Phosphorus/Carbon ratio | ||
| Base 1 | WaterQuality | ZREFRESP | Zooplankton: Carbon consumption rate by respiration | ||
| Base 1 | WaterQuality | ZSOLEXCR | Zooplankton: Soluble inorganic fraction in excretions |
MOHID Base 2
Module Atmosphere
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | Atmosphere | BOX_TIME_SERIE | Output of property values in time series files, integrated in boxes. | ||
| Base 2 | Atmosphere | DATA_COLUMN | Number of column in the time series file. | ||
| Base 2 | Atmosphere | FILENAME | Path to the file with the time series. | ||
| Base 2 | Atmosphere | IRRIGATION | Property added by irrigation | ||
| Base 2 | Atmosphere | NO_INTERPOLATION | NoInterpolation of Value In Time (instead of interpolation calculates the exact amount of property in a time period). This requires VariableDT. | ||
| Base 2 | Atmosphere | OUTPUT_HDF | Output of property values in HDF files. | ||
| Base 2 | Atmosphere | OUTPUT_TIME | Output instants of HDF5 file. | ||
| Base 2 | Atmosphere | RADIATION_METHOD | Method to compute solar radiation | 1 | Climatologic solar radiation algorithm |
| Base 2 | Atmosphere | 2 | CEQUALW2 solar radiation algorithm | ||
| Base 2 | Atmosphere | RANDOM_COMPONENT | Random component of property. | ||
| Base 2 | Atmosphere | STATISTICS | Choose to compute the statistics of this property | ||
| Base 2 | Atmosphere | STATISTICS_FILE | Path to the file with the statistics definition for this property. | ||
| Base 2 | Atmosphere | TIME_SERIE | Output of property values in time series files. | ||
| Base 2 | Atmosphere | TIME_SERIE_LOCATION | Path to the file that has the time series location characteristics. |
Module Geometry
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | Geometry | DISPLACEMENT_LIMIT | the maximum displacement that the model allow cell faces to move vertically in meters (if LAGRANGIAN : 1) | ||
| Base 2 | Geometry | DOMAINDEPTH | The depth of the domain lower limit. User must give a value to this keyword or else the model do not run. | ||
| Base 2 | Geometry | EMPTY_TOP_LAYERS | Number of empty layers counting from top | ||
| Base 2 | Geometry | EQUIDISTANT | Thickness of layers admitting that all the layers have the same thickness | ||
| Base 2 | Geometry | FACES_OPTION | Methodology to compute areas between cells | 2 | Average thickness of the adjacent water columns (advised option) |
| Base 2 | Geometry | 3 | Minimum thickness of the adjacent water columns (advanced user option) | ||
| Base 2 | Geometry | GRIDMOVEMENTDUMP | |||
| Base 2 | Geometry | ID | Domain ID | ||
| Base 2 | Geometry | IMPER_COEF_U | U Coefficient to compute faces areas in U points | ||
| Base 2 | Geometry | IMPER_COEF_V | V Coefficient to compute faces areas in V points | ||
| Base 2 | Geometry | IMPER_COEFX_U | X_U Coefficient to compute faces areas in U points | ||
| Base 2 | Geometry | IMPER_COEFX_V | X_V Coefficient to compute faces areas in V points | ||
| Base 2 | Geometry | IMPERMEABILITY | Consider impermeable cell faces | ||
| Base 2 | Geometry | INITIALIZATION_METHOD | Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity | CARTESIAN | Cartesian type coordinates |
| Base 2 | Geometry | SIGMA | Sigma type coordinates | ||
| Base 2 | Geometry | LAYERS | Number of layers | ||
| Base 2 | Geometry | LAYERTHICKNESS | If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers | ||
| Base 2 | Geometry | MIN_TOP_THICKNESS | minimum thickness of collapsing cells of the Harmonic domain | ||
| Base 2 | Geometry | MINEVOLVELAYERTHICKNESS | Allowed distortion in percentage of initial thickness (if LAGRANGIAN : 1) | ||
| Base 2 | Geometry | MINIMUMDEPTH | water column thickness below which the cell is considered uncovered | ||
| Base 2 | Geometry | MININITIALLAYERTHICKNESS | minimal thickness of the bottom cells | ||
| Base 2 | Geometry | TOLERANCEDEPTH | Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate | ||
| Base 2 | Geometry | TOTALTHICKNESS | Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates | ||
| Base 2 | Geometry | TYPE | Type of vertical coordinate of the domain | CARTESIAN | Cartesian coordinates |
| Base 2 | Geometry | CARTESIANTOP | A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only) | ||
| Base 2 | Geometry | FIXSEDIMENT | Fixed Sediment coordinates | ||
| Base 2 | Geometry | FIXSPACING | Fixed Spacing coordinates - used to study flows close to the bottom | ||
| Base 2 | Geometry | HARMONIC | Harmonic coordinates - the horizontal faces close to the surface
expand and collapse depending on the variation of the surface elevation. This coordinate was implemented in the geometry module to simulate reservoirs. | ||
| Base 2 | Geometry | LAGRANGIAN | Lagrangian coordinates - moves the upper and
lower faces with the vertical flow velocity. | ||
| Base 2 | Geometry | SIGMA | Sigma coordinates | ||
| Base 2 | Geometry | SIGMATOP | A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below |
Module BoxDif
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | BoxDif | OUTPUT_FILE | Output file location | ||
| Base 2 | BoxDif | TYPE | Coordinate Type | ||
| Base 2 | BoxDif | WRITE_BOXES | Option to write boxes output file |
Module FillMatrix
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | FillMatrix | BOXES_VALUES | Sequence of values for each box starting from box 1. | ||
| Base 2 | FillMatrix | CoefA | Coeficient to compute analytical profile. | ||
| Base 2 | FillMatrix | CoefB | Coeficient to compute analytical profile | ||
| Base 2 | FillMatrix | DATA_COLUMN | DATA_COLUMN is the number of the relevant column in the time series file. | ||
| Base 2 | FillMatrix | DEFAULTVALUE | Default value when INITIALIZATION_METHOD is used. | ||
| Base 2 | FillMatrix | DEPTH_PROFILE | Sequence of depth values. Used with PROFILE option. | ||
| Base 2 | FillMatrix | FILE_IN_TIME | Defines the kind of reading operation performed in time to modify the field | NONE | Matrix is not modified from reading values from file |
| Base 2 | FillMatrix | HDF | Reads data from an HDF5 file. There are restrictions regarding file format:
1) The fields stored in the file must correspond to the modeled domain, that is, they must correspond to the same horizontal and vertical grid. 2) In the Grid folder it is required to have the data sets: "Bathymetry", "ConnectionX", "ConnectionY", "Latitude", "Longitude" and "WaterPoints". 3) The name of the fields must be recognised by MOHID (see list of supported names) 4) Time data set must contain as many instants as the field data sets 5) Time data set must also contain dates for a period of the same or greater duration of the simulation. | ||
| Base 2 | FillMatrix | PROFILE_TIME_SERIE | Read solution from various profiles in time | ||
| Base 2 | FillMatrix | TIMESERIE | The data is given at a certain location with a time series. See time series to know about time series file format. File path is given in FILENAME. The number of the column containing needed data of the time series file must be indicated in DATA_COLUMN. | ||
| Base 2 | FillMatrix | FILENAME | Path to the file containing imposed data | ||
| Base 2 | FillMatrix | FILENAME_DEFAULT | Path to the file containing data for initialization of default value. | ||
| Base 2 | FillMatrix | HDF_FIELD_NAME | HDF5 group name | ||
| Base 2 | FillMatrix | INITIALIZATION_DEFAULT | Initial condition for default value, usable with INITIALIZATION_METHOD options not valid for all domain. | ||
| Base 2 | FillMatrix | INITIALIZATION_METHOD | Initial condition data input method. | ANALYTIC PROFILE | Initialization made by an analytical vertical profile. |
| Base 2 | FillMatrix | ASCII_FILE | Initialization with text file. File path given at FILENAME. File format is a griddata file (2D or 3D). In points of the domain where no values are given the DEFAULTVALUE is assumed.
If griddata file is 2D and the domain is 3D, a unique value is assumed for the whole water column. | ||
| Base 2 | FillMatrix | BOXES | Initialization by boxes (polygonal sub-domains) for which a constant value is specified. Boxes are specified in separate file (path given by FILENAME keyword) blocks that have specific format. | ||
| Base 2 | FillMatrix | CONSTANT | Constant value for all domain. | ||
| Base 2 | FillMatrix | HDF | Reads initial field from a HDF file. Field is interpolated in time if necessary. | ||
| Base 2 | FillMatrix | LAYERS | Initialization by horizontal layers. Values are specified with LAYERS_VALUES keyword. | ||
| Base 2 | FillMatrix | PROFILE | Initialization made by vertical profile. Horizontal distribution is considered uniform. Profile must be specified with NDEPTH, DEPTH_PROFILE and PROFILE_VALUES keywords. Layers must no correspond to vertical discretization. The program interpolates the data on the vertical as needed. | ||
| Base 2 | FillMatrix | PROFILE_TIMESERIE | Read initial field from various profiles. | ||
| Base 2 | FillMatrix | TIMESERIE | Reads initial values from a time series file. If necessary the initial value is interpolated in time. | ||
| Base 2 | FillMatrix | LAYERS_VALUES | Sequence of values for each layer starting from the bottom layer. | ||
| Base 2 | FillMatrix | MULTIPLYING_FACTOR | Data field multiplying factor. HDF5 only. | ||
| Base 2 | FillMatrix | NDEPTHS | Number of values that the define the profile. | ||
| Base 2 | FillMatrix | PROFILE_TYPE | Type of analytical profile | EXPONENTIAL | Profile has an exponential format, given by the following expression Value = DefaultValue - CoefA * exp(- CellDepth / CoefB) |
| Base 2 | FillMatrix | LINEAR | Profile has a linear format, given by the following expression:
Value = DefaultValue + CoefA * CellDepth / CoefB | ||
| Base 2 | FillMatrix | PROFILE_VALUES | Sequence of values that constitute the profile. |
Module Geometry
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | Geometry | DISPLACEMENT_LIMIT | the maximum displacement that the model allow cell faces to move vertically in meters | ||
| Base 2 | Geometry | DOMAINDEPTH | The depth of the domain lower limit. User must give a value to this keyword or else the model do not run. | ||
| Base 2 | Geometry | EMPTY_TOP_LAYERS | Number of empty layers counting from top | ||
| Base 2 | Geometry | EQUIDISTANT | Thickness of layers admitting that all the layers have the same thickness | ||
| Base 2 | Geometry | FACES_OPTION | Methodology to compute areas between cells | 2 | Average thickness of the adjacent water columns (advised option) |
| Base 2 | Geometry | 3 | Minimum thickness of the adjacent water columns (advanced user option) | ||
| Base 2 | Geometry | GRIDMOVEMENTDUMP | |||
| Base 2 | Geometry | ID | Domain ID | ||
| Base 2 | Geometry | IMPER_COEF_U | U Coefficient to compute faces areas in U points | ||
| Base 2 | Geometry | IMPER_COEF_V | V Coefficient to compute faces areas in V points | ||
| Base 2 | Geometry | IMPER_COEFX_U | X_U Coefficient to compute faces areas in U points | ||
| Base 2 | Geometry | IMPER_COEFX_V | X_V Coefficient to compute faces areas in V points | ||
| Base 2 | Geometry | IMPERMEABILITY | Consider impermeable cell faces | ||
| Base 2 | Geometry | INITIALIZATION_METHOD | Type of initialization used in the case of a Lagrangian coordinate. This is also the reference coordinate in relation to which the Lagrangian coordinate suffers distortion function of the vertical velocity | CARTESIAN | Cartesian type coordinates |
| Base 2 | Geometry | SIGMA | Sigma type coordinates | ||
| Base 2 | Geometry | LAGRANGIAN | Indicates that the defined domain can evolve in size as a lagrangian domain | ||
| Base 2 | Geometry | LAYERS | Number of layers | ||
| Base 2 | Geometry | LAYERTHICKNESS | If not equidistant specifies layers thicknesses, starting from bottom layers. The number of values must be equal to the number of layers | ||
| Base 2 | Geometry | MIN_TOP_THICKNESS | minimum thickness of colapsing cells of the Harmonic domain | ||
| Base 2 | Geometry | MINEVOLVELAYERTHICKNESS | coeficient which indicates how much a Lagrangian layer | ||
| Base 2 | Geometry | MINIMUMDEPTH | water column thickness below which the cell is considered uncovered | ||
| Base 2 | Geometry | MININITIALLAYERTHICKNESS | minimal thickness of the bottom cells | ||
| Base 2 | Geometry | TOLERANCEDEPTH | Thickness of layer below which the bathymetry is corrected. Valid only for the sigma and Lagrangian (sigma initializaton) coordinate | ||
| Base 2 | Geometry | TOTALTHICKNESS | Total domain thickness. Valid only for the FixSpacing and FixSediment coordinates | ||
| Base 2 | Geometry | TYPE | Type of vertical coordinate of the domain | CARTESIAN | Cartesian coordinates |
| Base 2 | Geometry | CARTESIANTOP | A Cartesian Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only) | ||
| Base 2 | Geometry | FIXSEDIMENT | Fixed Sediment coordinates | ||
| Base 2 | Geometry | FIXSPACING | Fixed Spacing coordinates - used to study flows close to the bottom | ||
| Base 2 | Geometry | HARMONIC | Harmonic coordinates - the horizontal faces close to the surface
expand and collapse depending on the variation of the surface elevation. This coordinate was implemented in the geometry module to simulate reservoirs. | ||
| Base 2 | Geometry | LAGRANGIAN | Lagrangian coordinates - moves the upper and
lower faces with the vertical flow velocity. | ||
| Base 2 | Geometry | SIGMA | Sigma coordinates | ||
| Base 2 | Geometry | SIGMATOP | A Sigma Coordinate which is calculated downwards from the Digital Terrain (MOHID Land only). Needs Normal Sigma Below |
Module GridData
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | GridData | EVOLUTION | Gets if the bathymetry can change in time | ||
| Base 2 | GridData | EVOLUTION_FILE | Path to file that describes the time evolution. | ||
| Base 2 | GridData | FILL_VALUE | Default value for points with no data | ||
| Base 2 | GridData | PROPERTY_NAME | Name of the property that will change in time | ||
| Base 2 | GridData | TYPE_ZUV | Matrix Types (Centered in Z, U or V) |
Module HorizontalGrid
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | HorizontalGrid | CONSTANT_SPACING_X | Check if the spacing in X is constant | ||
| Base 2 | HorizontalGrid | CONSTANT_SPACING_Y | Check if constant Spacing in y is used | ||
| Base 2 | HorizontalGrid | COORD_TIP | Coordinate type of grid | ||
| Base 2 | HorizontalGrid | DX | Grid spacing dx | ||
| Base 2 | HorizontalGrid | DY | Gets DY spacing | ||
| Base 2 | HorizontalGrid | GRID_ANGLE | Grid angle with north | ||
| Base 2 | HorizontalGrid | ILB_IUB | minimum and maximum i in grid | ||
| Base 2 | HorizontalGrid | JLB_JUB | minimum and maximum J in grid | ||
| Base 2 | HorizontalGrid | LATITUDE | Latitude of grid | ||
| Base 2 | HorizontalGrid | LONGITUDE | Longitude of grid | ||
| Base 2 | HorizontalGrid | ORIGIN | X and Y origin of grid | ||
| Base 2 | HorizontalGrid | ZONE | UTM zone of coordinate |
Module Interpolation
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | Interpolation | EXTRAPOLATE_2D | |||
| Base 2 | Interpolation | EXTRAPOLATE_PROFILE | Check if the user wants to extrapolate in the vertical | ||
| Base 2 | Interpolation | IWD_N | Coefficient use in the inverse weight interpolation | ||
| Base 2 | Interpolation | KERNEL_TYPE | Type of kernel used in the convolution interpolations | Exponential | |
| Base 2 | Interpolation | KERNEL_TYPE | Type of kernel used in the convolution interpolations | Gaussian | |
| Base 2 | Interpolation | MAX_DISTANCE | Max distance for points to be consider in the inverse weight interpolation | ||
| Base 2 | Interpolation | MAX_ITERATIONS | Maximum number of iterations allowed in the logistic regression in the data-oriented convolution. | ||
| Base 2 | Interpolation | METHODOLOGY | The methodology used in the interpolation process | 1 | Conservative convolution |
| Base 2 | Interpolation | 2 | NonConservative convolution | ||
| Base 2 | Interpolation | 3 | Triangulation | ||
| Base 2 | Interpolation | 4 | Bilinear | ||
| Base 2 | Interpolation | 5 | Spline 2D | ||
| Base 2 | Interpolation | 6 | Inverse weight | ||
| Base 2 | Interpolation | N_DIM | The number of dimensions of the field to interpolate | ||
| Base 2 | Interpolation | N_GROUPS | Number of groups generated for each dimension in the data-oriented convolution. | ||
| Base 2 | Interpolation | NC_TYPE | Checks what class of NonConservative convolution process to use | 1 | User defined kernel for the NonConservative convolution |
| Base 2 | Interpolation | 2 | Smoothes the field using the PHI value | ||
| Base 2 | Interpolation | 3 | Data | ||
| Base 2 | Interpolation | PHI | Smoothing parameter. Gives the degree of smoothing in the interpolated field. Its range is ]0,1]. | ||
| Base 2 | Interpolation | POLI_DEGREE_VERT | The order of the polynomial use to interpolate in the vertical | ||
| Base 2 | Interpolation | SAMPLE_SIZE | Number of observations needed for the logistic regression in the data-oriented convolution. | ||
| Base 2 | Interpolation | TYPE_ZUV | Where points are defined in the cell (Z - center; U - Face U; V : Face V) |
Module Statistic
| Project | Module | Keyword | Keyword description | Options | Option description |
|---|---|---|---|---|---|
| Base 2 | Statistic | DAILY_STATISTIC | Performs daily integration of statistic values | ||
| Base 2 | Statistic | GEOMETRIC_MEAN | Performs geometric mean calculation for non negative parameters | ||
| Base 2 | Statistic | GLOBAL_STATISTIC | Performs statistic calculation of every timestep | ||
| Base 2 | Statistic | LAYER_DEFINITION | Layer definition | ||
| Base 2 | Statistic | MAX_DEPTH | Max depth of layer | ||
| Base 2 | Statistic | MAX_LAYER | Max layer k index | ||
| Base 2 | Statistic | METHOD_STATISTIC | Way to perform the statistics (full matrix, layers, etc) | ||
| Base 2 | Statistic | MIN_DEPTH | Minimum depth of layer | ||
| Base 2 | Statistic | MIN_LAYER | Layer lower index start | ||
| Base 2 | Statistic | MONTHLY_STATISTIC | Performs monthly integration of statistic values | ||
| Base 2 | Statistic | PERCENTILE |
MOHID Land
Module Runoff
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type
|
|---|---|---|---|---|---|---|---|---|
| Land | Runoff | HYDRODYNAMIC_APROX | The overland flow routing method. | 1 | Kinematic Wave | 2 | Int | |
| Land | Runoff | 2 | Diffusion Wave | |||||
| Land | Runoff | 3 | Dynamic Wave | |||||
| Land | Runoff | ADJUST_SLOPE | Slope correction | 0/1 | Inactive/Active | 1 | Boolean | |
| Land | Runoff | MIN_WATER_COLUMN | Minimum water column for overland flow | 0.001 | m | Real | ||
| Land | Runoff | STABILIZE | Connect/disconnect stability criteria | 0/1 | Inactive/Active | 0 | Boolean | |
| Land | Runoff | STABILIZE_FACTOR | Fraction of cell volume allowed for volume variation in one time step | Needed if STABILIZE : 1 | 0.1 | % | Real | |
| Land | Runoff | MIN_ITERATIONS | Minimum number of internal iteration to start asking for a lower global dt | 1 | Int | |||
| Land | Runoff | MAX_ITERATIONS | Maximum number of internal iterations allowed for the module | 1024 | Int | |||
| Land | Runoff | LIMIT_DT_COURANT | Connect/disconnect limitation of dt by courant number | 0/1 | Inactive/Active | 0 | Boolean | |
| Land | Runoff | MAX_COURANT | Maximum value for Courant number | Needed if LIMIT_DT_COURANT : 1 | 1.0 | Real | ||
| Land | Runoff | DT_FACTOR | Factor for next internal dt prediction (increase dt by the factor if stable. reduce otherwise) | 1.25 | Real | |||
| Land | Runoff | DT_SPLIT_FACTOR | Factor to predict next number of iteration | 2.0 | Real | |||
| Land | Runoff | IMPOSE_BOUNDARY_VALUE | Connect/disconnect imposing boundary value | 0/1 | Inactive/Active | 0 | Boolean | |
| Land | Runoff | BOUNDARY_VALUE | Imposed boundary value | Needed if IMPOSE_BOUNDARY_VALUE : 1 | m | Real | ||
| Land | Runoff | SIMPLE_CHANNEL_FLOW | 0/1 | Inactive/Active | 0 | Boolean | ||
| Land | Runoff | ROUTE_D4 | Connect/disconnect route of water in 8 direction if accumulation cells exist | 0/1 | Inactive/Active | 0 | Boolean | |
| Land | Runoff | ROUTE_D4_ON_DN | Connect/disconnect route of water in 8 direction on cells that have drainage network | 0/1 | Inactive/Active | 0 | Boolean | |
| Land | Runoff | ADVECTION | Connect/disconnect advection | 0/1 | Inactive/Active | 1 | Boolean | |
| Land | Runoff | MIN_WATER_COLUMN_ADVECTION | Minimum water column for advection | Needed if ADVECTION : 1 | 0.0 | Real | ||
| Land | Runoff | WATER_COLUMN_FACE | Method for computing water column in the face | 1 | Using maximum level and maximum bottom | 1 | Int | |
| Land | Runoff | 2 | Using maximum level and average of bottom | |||||
| Land | Runoff | HYDRAULIC_RADIUS_MARGINS | 0/1 | Inactive/Active | 1 | Boolean | ||
| Land | Runoff | IMPOSE_MAX_VELOCITY | 0/1 | Inactive/Active | 0 | Boolean | ||
| Land | Runoff | MAX_VELOCITY | Needed if IMPOSE_MAX_VELOCITY : 1 | 0.1 | Real | |||
| Land | Runoff | DYNAMIC_ADJUST_MANNING | 0/1 | Inactive/Active | 0 | Boolean | ||
| Land | Runoff | ALLOW_BOUNDARY_INFLOW | Allow water to go in the domain if boundary level is higher than water level or not and the level imposed behaves like a wall | 0/1 | Inactive/Active | 0 | Boolean |
Module Basin
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Basin | |||||||
| Land | Basin | |||||||
| Land | Basin |
Module Irrigation
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Irrigation | |||||||
| Land | Irrigation | |||||||
| Land | Irrigation |
Module ModulePorousMedia
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | PorousMedia | |||||||
| Land | PorousMedia | |||||||
| Land | PorousMedia |
ModulePorousMediaProperties
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | PorousMediaProperties | |||||||
| Land | PorousMediaProperties | |||||||
| Land | PorousMediaProperties |
ModuleReservoirs
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Reservoirs | |||||||
| Land | Reservoirs | |||||||
| Land | Reservoirs |
ModuleRunoffProperties
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | RunoffProperties | |||||||
| Land | RunoffProperties | |||||||
| Land | RunoffProperties |
ModuleSnow
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Snow | |||||||
| Land | Snow | |||||||
| Land | Snow |
ModuleVegetation
Vegetation.dat
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Vegetation | VEGETATION_ID_FILE | Vegetation distribution grid path | - | - | String | ||
| Land | Vegetation | VEGETATION_DT | Vegetation DT | - | 86400 | seconds | Real | |
| Land | Vegetation | INTEGRATION_DT | DT to integrate external variables until vegetation is called (vegetation DT) | 86400 | seconds | Real | ||
| Land | Vegetation | PARAMETERS_FILE | Agricultural practices definition | - | - | String | ||
| Land | Vegetation | GROWTH_DATABASE | Growth parameters for each vegetation type - read in case of vegetation growth simulation | - | - | String | ||
| Land | Vegetation | PESTICIDE_DATABASE | Readed if growth simulation and PESTICIDE : 1 | - | - | String | ||
| Land | Vegetation | FERTILIZER_DATABASE | Readed if growth simulation and if FERTILIZATION : 1 | - | - | String | ||
| Land | Vegetation | FEDDES_DATABASE | Readed if not using growth simulation | - | - | String | ||
| Land | Vegetation | MODEL_EVOLUTION | Global properties evolution | 1 | Read from file | - | Integer | |
| Land | Vegetation | 2 | Vegetation growth model | Integer | ||||
| Land | Vegetation | GRAZING | Connects/disconnects grazing | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | HARVEST_KILL | Connects/disconnects Harvest and/or Kill | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | DORMANCY | Connects/disconnects dormancy | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | FERTILIZATION | Connects/disconnects fertilization | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | PESTICIDE | Connects/disconnects pesticides | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | NUTRIENT_FLUXES_WITH_SOIL | Connects/disconnects nutrient fluxes with soil | 0/1 | Inactive/Active | 1 | - | Boolean |
| Land | Vegetation | WATER_UPTAKE | 0/1 | Inactive/Active | 0 | - | Boolean | |
| Land | Vegetation | WATER_STRESS | Connects/disconnects water limitation on plant growth | 0/1 | Inactive/Active | 1 | - | Boolean |
| Land | Vegetation | TEMPERATURE_STRESS | Connects/disconnects temp. limitation on plant growth | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | NITROGEN_STRESS | Connects/disconnects N limitation on plant growth | 0/1 | Inactive/Active | 1 | - | Boolean |
| Land | Vegetation | PHOSPHORUS_STRESS | Connects/disconnects P limitation on plant growth | 0/1 | Inactive/Active | 1 | - | Boolean |
| Land | Vegetation | ADJUST_RUE_FOR_CO2 | Connects/disconnects CO2 limitation on plant growth | 0/1 | Inactive/Active | 1 | - | Boolean |
| Land | Vegetation | ADJUST_RUE_FOR_VPD | Connects/disconnects Vapour Pressure Deficit limitation plant growth | 0/1 | Inactive/Active | 1 | - | Boolean |
| Land | Vegetation | CHANGE_LAI_SENESCENCE | Changes made to swat code because showed error with grazing | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | CHANGE_CANOPY_HEIGHT | Changes made to swat code because showed error with grazing | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | WATER_UPTAKE_METHOD | - | 1 | according to root profile | 1 | Integer | |
| Land | Vegetation | 2 | SWAT based (exponential and thresholds) | Integer | ||||
| Land | Vegetation | LIMIT_TRANSP_WATER_VEL | !Read if WATER_UPTAKE_METHOD == 1 | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | ROOT_PROFILE | Read if WATER_UPTAKE_METHOD == 1 | 1 | Triangular | 1 | Integer | |
| Land | Vegetation | 2 | Constant | Integer | ||||
| Land | Vegetation | 3 | Exponential(SWAT-like) | Integer | ||||
| Land | Vegetation | WATER_UPTAKE_STRESS_METHOD | Read if WATER_UPTAKE_METHOD == 1 | 1 | Feddes | 1 | Integer | |
| Land | Vegetation | 2 | VanGenuchten | Integer | ||||
| Land | Vegetation | NUTRIENT_UPTAKE_METHOD | - | 1 | uptake is: concentration * water uptake | 2 | Integer | |
| Land | Vegetation | 2 | SWAT based (independent of water uptake) | Integer | ||||
| Land | Vegetation | 3 | NO nutrient uptake | Integer | ||||
| Land | Vegetation | NUTRIENT_STRESS_METHOD | - | 1 | Effective/optimal | 2 | Integer | |
| Land | Vegetation | 2 | SWAT based | Integer | ||||
| Land | Vegetation | ATMOSPHERE_OUTPUT | Output averaged atmosphere properties during dt | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | FLUXES_TO_SOIL_OUTPUT | Output fluxes to soil | 0/1 | Inactive/Active | 0 | - | Boolean |
| Land | Vegetation | ATMOSPHERE_CO2 | Atmosphere CO2 concentrations - should be atmosphere prop | 330 | ppm | Real | ||
| Land | Vegetation | WATER_UPTAKE_COMPENSATION_FACTOR | Factor for uptake compensation from lower layers if computed layer demand is not met if zero there will exist no compensation. If 1. total demand no met may come from lower layers | 0. | real | |||
| Land | Vegetation | NITROGEN_DISTRIBUTION_PARAMETER | -20 | Real | ||||
| Land | Vegetation | PHOSPHORUS_DISTRIBUTION_PARAMETER | -20 | Real | ||||
| Land | Vegetation | PHOSPHORUS_DISTRIBUTION_PARAMETER | -20 | Real | ||||
| Land | Vegetation | EVOLUTION | Global properties evolution | 1 | Read from file | - | Integer | |
| Land | Vegetation | 2 | Vegetation growth model | Integer |
Vegetation Parameters File
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Vegetation | AGRIC_PRACT_ID | Integer | |||||
| Land | Vegetation | NAME | String | |||||
| Land | Vegetation | VEGETATION_ID | crop ID used in this practice that has correspondence to SWAT crop growth database (see growth database) | Integer | ||||
| Land | Vegetation | PLANTING_JULIANDAY | Julian day when planting will occur | Integer | ||||
| Land | Vegetation | PLANTING_HUBASE | Percentage of POTENTIAL YEARLY HU when planting will occur | Real | ||||
| Land | Vegetation | MATURITY_HU | Total PLANT ACCUMULATED HU when reaching maturity | Integer | ||||
| Land | Vegetation | FILENAME | String | |||||
| Land | Vegetation | HARVESTKILL_JULIANDAY | julian day when harvestkill operation occur | Integer | ||||
| Land | Vegetation | HARVESTKILL_PLANTHU | Percentage of PLANT ACCUMULATED HU when harvestkill operation occur | Real | ||||
| Land | Vegetation | HARVEST_JULIANDAY | julian day when harvest operation occur | Integer | ||||
| Land | Vegetation | HARVEST_PLANTHU | Percentage of PLANT ACCUMULATED HU when harvest operation occur | Real | ||||
| Land | Vegetation | HARVEST_EFFICIENCY | Efficiency for harvest operation (residue if lower than 1) | Real | ||||
| Land | Vegetation | KILL_JULIANDAY | julian day when harvestkill operation occur | Integer | ||||
| Land | Vegetation | KILL_PLANTHU | Percentage of PLANT ACCUMULATED HU when kill operation occur | Real | ||||
| Land | Vegetation | GRAZING_START_JULIANDAY | julian day when grazing will occur | Integer | ||||
| Land | Vegetation | GRAZING_START_PLANTHU | Percentage of POTENTIAL YEARLY HU when grazing will occur | Real | ||||
| Land | Vegetation | GRAZING_DAYS | Days of grazing (continuous) | Integer | ||||
| Land | Vegetation | MINIMUM_BIOMASS_FOR_GRAZING | minimum biomass (kg/ha) for grazing | Real | ||||
| Land | Vegetation | GRAZING_BIOMASS | grazed biomass (kh/ha.day) | Real | ||||
| Land | Vegetation | GRAZING_FRACTION_TO_MANURE | fraction of grazed biomass that goes to manure in same cell and day (0-1) | Real | ||||
| Land | Vegetation | GRAZING_MANURE_NFRACTION | fraction of manure biomass that is N (0-1). If not > 0 will be the plant N fraction (animal digestion did not changed ratio) | Real | ||||
| Land | Vegetation | GRAZING_MANURE_NUREAFRACTION | fraction of manure N that is Urea (0-1). The remainder will be organic N | Real | ||||
| Land | Vegetation | TRAMPLING_BIOMASS | biomass not eaten but removed from plant and moved to soil, related to grazing efficiency kg/ha.day) | Real |
Fertilization Parameters File
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type |
|---|---|---|---|---|---|---|---|---|
| Land | Vegetation | FERTILIZER_ID | Fertilizer used in autofertilization (see fertilizer database) | Integer | ||||
| Land | Vegetation | NITROGEN_TRESHOLD | Percentage of stress below which autofertilization starts (0-1) | Real | ||||
| Land | Vegetation | NITROGEN_APPLICATION_MAX | Maximum amount of fertilizer in one application (kg/ha) | Real | ||||
| Land | Vegetation | NITROGEN_ANNUAL_MAX | Maximum amount of fertilizer in one year (kg/ha) | Real | ||||
| Land | Vegetation | EXPLICIT_PHOSPHORUS | 1 | Explicit add phosphorus if needed | - | Boolean | ||
| 0 | Add phosphorus if nitrogen needed (SWAT method) | |||||||
| Land | Vegetation | PHOSPHORUS_TRESHOLD | only read if EXPLICIT_PHOSPHORUS : 1 | Real | ||||
| Land | Vegetation | PHOSPHORUS_APPLICATION_MAX | only read if EXPLICIT_PHOSPHORUS : 1 | Real | ||||
| Land | Vegetation | PHOSPHORUS_ANNUAL_MAX | only read if EXPLICIT_PHOSPHORUS : 1 | Real | ||||
| Land | Vegetation | N_STRESS_TYPE | 1 | NTarget | - | Integer | ||
| 2 | Annual Max approach | |||||||
| Land | Vegetation | FERTILIZER_APPLICATION_JDAY | julian day when pesticide application will occur | Integer | ||||
| Land | Vegetation | FERTILIZER_APPLICATION_HU | Percentage of POTENTIAL YEARLY HU when pesticide application will occur | Real | ||||
| Land | Vegetation | FERTILIZER_CONT_ON S | 1 | If this is a continuous fertilizer application | - | Boolean | ||
| 0 | or absent if not | |||||||
| Land | Vegetation | FERTILIZER_CONT_DAYS | how many days of continuous application (read if FERTILIZER_CONT_ON : 1) | Integer | ||||
| Land | Vegetation | FERTILIZER_APPLICATION_KG_HA | Amount of fertilizer applied (kg/ha) | Real | ||||
| Land | Vegetation | PESTICIDE_ID | Pesticide used in this application (see pesticide database) | Integer | ||||
| Land | Vegetation | PESTICIDE_APPLICATION_JDAY | julian day when pesticide application will occur | Integer | ||||
| Land | Vegetation | PESTICIDE_APPLICATION_HU | Percentage of POTENTIAL YEARLY HU when pesticide application will occur | Real | ||||
| Land | Vegetation | PESTICIDE_APPLICATION_KG_HA | Amount of pesticide applied (kg/ha) | Real | ||||
| Land | Vegetation | PESTICIDE_CONT_ON | 1 | If this is a continuous pesticide application | - | Boolean | ||
| 0 | or absent if not | |||||||
| Land | Vegetation | PESTICIDE_CONT_DAYS | how many days of continuous application (read if PESTICIDE_CONT_ON : 1) | Integer |
Growth Database File
| Project | Module | Keyword | Keyword description | Options | Option description | Default Value | Units | Type
MOHID WaterModule Assimilation
Module Consolidation
Module FreeVerticalMovement
Module Hydrodynamic
Module HydrodynamicFile
Module InterfaceSedimentWater
Module Jet
Module Lagrangian
Module Model
Module Oil
Module Sand
Module SedimentProperties
Module Turbulence
Module WaterProperties
Module Waves
MOHID ToolsValida4D
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